Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598880 | XP_013455580.1 | 98.913 | 92 | 1 | 0 | 1 | 92 | 1 | 92 | 5.71e-59 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598880 | G7ZX33 | 98.913 | 92 | 1 | 0 | 1 | 92 | 1 | 92 | 2.73e-59 | 185 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009420 | Msa0598880 | -0.826779 | 2.248987e-54 | -8.615850e-47 |
| Msa0053010 | Msa0598880 | -0.802327 | 5.913437e-49 | -8.615850e-47 |
| Msa0068740 | Msa0598880 | 0.813647 | 2.302527e-51 | -8.615850e-47 |
| Msa0075880 | Msa0598880 | -0.827856 | 1.241629e-54 | -8.615850e-47 |
| Msa0105260 | Msa0598880 | -0.822135 | 2.785040e-53 | -8.615850e-47 |
| Msa0131770 | Msa0598880 | -0.804608 | 1.990496e-49 | -8.615850e-47 |
| Msa0137640 | Msa0598880 | -0.802915 | 4.472103e-49 | -8.615850e-47 |
| Msa0194440 | Msa0598880 | -0.844444 | 7.529747e-59 | -8.615850e-47 |
| Msa0220740 | Msa0598880 | -0.801525 | 8.640589e-49 | -8.615850e-47 |
| Msa0223410 | Msa0598880 | 0.813439 | 2.558068e-51 | -8.615850e-47 |
| Msa0223910 | Msa0598880 | -0.800151 | 1.648994e-48 | -8.615850e-47 |
| Msa0380850 | Msa0598880 | -0.808611 | 2.844692e-50 | -8.615850e-47 |
| Msa0392040 | Msa0598880 | 0.808624 | 2.826110e-50 | -8.615850e-47 |
| Msa0433410 | Msa0598880 | 0.828408 | 9.142179e-55 | -8.615850e-47 |
| Msa0434000 | Msa0598880 | -0.817352 | 3.447406e-52 | -8.615850e-47 |
| Msa0437830 | Msa0598880 | 0.801774 | 7.682701e-49 | -8.615850e-47 |
| Msa0455760 | Msa0598880 | -0.805857 | 1.090041e-49 | -8.615850e-47 |
| Msa0459260 | Msa0598880 | -0.843737 | 1.165702e-58 | -8.615850e-47 |
| Msa0469940 | Msa0598880 | 0.827697 | 1.355441e-54 | -8.615850e-47 |
| Msa0306210 | Msa0598880 | 0.832355 | 9.911471e-56 | -8.615850e-47 |
| Msa0331940 | Msa0598880 | -0.801171 | 1.021259e-48 | -8.615850e-47 |
| Msa0340410 | Msa0598880 | -0.804374 | 2.227522e-49 | -8.615850e-47 |
| Msa0344690 | Msa0598880 | 0.807775 | 4.286008e-50 | -8.615850e-47 |
| Msa0344920 | Msa0598880 | -0.808554 | 2.924885e-50 | -8.615850e-47 |
| Msa0492840 | Msa0598880 | -0.831836 | 1.331411e-55 | -8.615850e-47 |
| Msa0532810 | Msa0598880 | 0.831636 | 1.492123e-55 | -8.615850e-47 |
| Msa0598880 | Msa0607540 | -0.803752 | 3.001129e-49 | -8.615850e-47 |
| Msa0598880 | Msa0669410 | -0.846282 | 2.395699e-59 | -8.615850e-47 |
| Msa0598880 | Msa0670000 | -0.804830 | 1.789438e-49 | -8.615850e-47 |
| Msa0598880 | Msa0732840 | -0.823255 | 1.528721e-53 | -8.615850e-47 |
| Msa0598880 | Msa0745260 | 0.809168 | 2.161663e-50 | -8.615850e-47 |
| Msa0598880 | Msa0800210 | -0.845656 | 3.544485e-59 | -8.615850e-47 |
| Msa0598880 | Msa0824390 | -0.802999 | 4.296651e-49 | -8.615850e-47 |
| Msa0598880 | Msa0842710 | -0.848552 | 5.701012e-60 | -8.615850e-47 |
| Msa0598880 | Msa0876850 | 0.807340 | 5.303352e-50 | -8.615850e-47 |
| Msa0598880 | Msa0886330 | 0.842642 | 2.282525e-58 | -8.615850e-47 |
| Msa0598880 | Msa0913060 | -0.817698 | 2.880950e-52 | -8.615850e-47 |
| Msa0598880 | Msa0913480 | 0.816423 | 5.573437e-52 | -8.615850e-47 |
| Msa0598880 | Msa0925290 | -0.822486 | 2.308941e-53 | -8.615850e-47 |
| Msa0598880 | Msa0925870 | -0.846094 | 2.694451e-59 | -8.615850e-47 |
| Msa0598880 | Msa0967280 | -0.826045 | 3.364073e-54 | -8.615850e-47 |
| Msa0598880 | Msa0976290 | -0.810555 | 1.087497e-50 | -8.615850e-47 |
| Msa0598880 | Msa0998680 | -0.812067 | 5.107718e-51 | -8.615850e-47 |
| Msa0598880 | Msa1002360 | -0.842868 | 1.987583e-58 | -8.615850e-47 |
| Msa0598880 | Msa1117530 | -0.812317 | 4.505542e-51 | -8.615850e-47 |
| Msa0598880 | Msa1124540 | 0.815566 | 8.655880e-52 | -8.615850e-47 |
| Msa0598880 | Msa1132970 | -0.824448 | 8.027606e-54 | -8.615850e-47 |
| Msa0598880 | Msa1144720 | 0.824802 | 6.625584e-54 | -8.615850e-47 |
| Msa0598880 | Msa1224580 | 0.828151 | 1.054393e-54 | -8.615850e-47 |
| Msa0598880 | Msa1241130 | 0.833944 | 3.985258e-56 | -8.615850e-47 |
| Msa0598880 | Msa1248370 | -0.823413 | 1.403889e-53 | -8.615850e-47 |
| Msa0598880 | Msa1269940 | -0.805391 | 1.365496e-49 | -8.615850e-47 |
| Msa0598880 | Msa1310700 | -0.823223 | 1.555241e-53 | -8.615850e-47 |
| Msa0598880 | Msa1325860 | 0.816749 | 4.710205e-52 | -8.615850e-47 |
| Msa0598880 | Msa1335780 | 0.826811 | 2.210396e-54 | -8.615850e-47 |
| Msa0598880 | Msa1362390 | -0.808730 | 2.683110e-50 | -8.615850e-47 |
| Msa0598880 | Msa1367850 | -0.849733 | 2.675433e-60 | -8.615850e-47 |
| Msa0598880 | Msa1373430 | 0.809325 | 2.001279e-50 | -8.615850e-47 |
| Msa0598880 | Msa1414750 | 0.819851 | 9.347148e-53 | -8.615850e-47 |
| Msa0598880 | Msa1451620 | 0.808833 | 2.549794e-50 | -8.615850e-47 |
| Msa0598880 | Msa1454430 | -0.828242 | 1.002648e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598880 | MtrunA17_Chr4g0022541 | 98.913 | 92 | 1 | 0 | 1 | 92 | 1 | 92 | 5.25e-63 | 185 |
| Msa0598880 | MtrunA17_Chr2g0318351 | 57.778 | 90 | 35 | 1 | 3 | 92 | 6 | 92 | 1.29e-34 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598880 | AT2G20820.1 | 59.302 | 86 | 34 | 1 | 1 | 85 | 1 | 86 | 1.68e-29 | 101 |
| Msa0598880 | AT2G20820.2 | 51.613 | 62 | 29 | 1 | 1 | 61 | 1 | 62 | 4.02e-13 | 60.1 |
Find 61 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCAGACAATGAATATT+TGG | 0.150468 | 4_2:-36616004 | Msa0598880:three_prime_UTR |
| GATTCAGGAATTGGCATAAA+TGG | 0.218206 | 4_2:+36615928 | None:intergenic |
| TGATCCTTACATACATAAAA+AGG | 0.236331 | 4_2:-36618487 | Msa0598880:five_prime_UTR |
| TTTGTGATTGTCTCTTTAAC+TGG | 0.238620 | 4_2:-36617328 | Msa0598880:CDS |
| TCATAGAGTATTTGATAATA+TGG | 0.282537 | 4_2:+36615826 | None:intergenic |
| ACCCAATGAGTCCTTCTAAA+TGG | 0.292979 | 4_2:-36617491 | Msa0598880:CDS |
| CTTGCAGACAATGAATATTT+GGG | 0.298333 | 4_2:-36616003 | Msa0598880:three_prime_UTR |
| GGCTGGGGACTAACATTCTA+TGG | 0.313459 | 4_2:-36617307 | Msa0598880:CDS |
| TGCTCTTCCTTCCATTTAGA+AGG | 0.313496 | 4_2:+36617480 | None:intergenic |
| CGTGGCCTCGCCGCAGCTGC+AGG | 0.320385 | 4_2:-36618317 | Msa0598880:intron |
| CGTAGTTGAAATCAGGATTC+AGG | 0.341397 | 4_2:+36615913 | None:intergenic |
| TGATTGTCTCTTTAACTGGC+TGG | 0.342484 | 4_2:-36617324 | Msa0598880:CDS |
| TGAAATCAGGATTCAGGAAT+TGG | 0.360943 | 4_2:+36615919 | None:intergenic |
| CTGCAGCTGCGGCGAGGCCA+CGG | 0.366142 | 4_2:+36618318 | None:intergenic |
| TTGCAAACGTAGTTGAAATC+AGG | 0.367221 | 4_2:+36615906 | None:intergenic |
| TTCCATTTAGAAGGACTCAT+TGG | 0.371713 | 4_2:+36617489 | None:intergenic |
| GATGAGTTGAATGGGAGATT+TGG | 0.382911 | 4_2:+36618346 | None:intergenic |
| CTGCGGCGAGGCCACGGCGG+TGG | 0.386057 | 4_2:+36618324 | None:intergenic |
| ATCAATGATAACAAAGCAAA+AGG | 0.438211 | 4_2:+36616031 | None:intergenic |
| CTGAAGCTTGATAGCAATCA+TGG | 0.457577 | 4_2:-36618420 | Msa0598880:exon |
| TTCAGAGAAATGATGTCCTC+CGG | 0.460602 | 4_2:+36618438 | None:intergenic |
| ACGGCGGTGGATGAGTTGAA+TGG | 0.461675 | 4_2:+36618337 | None:intergenic |
| TCATGGTAATAATGTGTGCC+GGG | 0.471480 | 4_2:-36616103 | Msa0598880:three_prime_UTR |
| TCCATTTAGAAGGACTCATT+GGG | 0.472687 | 4_2:+36617490 | None:intergenic |
| ATTCAGGAATTGGCATAAAT+GGG | 0.472739 | 4_2:+36615929 | None:intergenic |
| CGGCGGTGGATGAGTTGAAT+GGG | 0.484723 | 4_2:+36618338 | None:intergenic |
| GATTGTCTCTTTAACTGGCT+GGG | 0.485266 | 4_2:-36617323 | Msa0598880:CDS |
| ATGTATGTAAGGATCAATCA+AGG | 0.495568 | 4_2:+36618494 | None:intergenic |
| CCAAATATTCATTGTCTGCA+AGG | 0.519355 | 4_2:+36616004 | None:intergenic |
| ACTCATTGGGTCTTTCCAGC+AGG | 0.521627 | 4_2:+36617503 | None:intergenic |
| ATTGTCTCTTTAACTGGCTG+GGG | 0.524474 | 4_2:-36617322 | Msa0598880:CDS |
| CTCATGGTAATAATGTGTGC+CGG | 0.527484 | 4_2:-36616104 | Msa0598880:three_prime_UTR |
| TATCAAATACTCTATGATCC+TGG | 0.536042 | 4_2:-36615820 | Msa0598880:three_prime_UTR |
| TTTCCAGCAGGCAACTTTAG+CGG | 0.538012 | 4_2:+36617515 | None:intergenic |
| GCTGGGGACTAACATTCTAT+GGG | 0.545264 | 4_2:-36617306 | Msa0598880:CDS |
| GTTCCGCTAAAGTTGCCTGC+TGG | 0.548596 | 4_2:-36617518 | Msa0598880:CDS |
| AATGAGTCCTTCTAAATGGA+AGG | 0.562278 | 4_2:-36617487 | Msa0598880:CDS |
| CAGCTGCGGCGAGGCCACGG+CGG | 0.574552 | 4_2:+36618321 | None:intergenic |
| TTGAATGGGAGATTTGGATG+AGG | 0.577903 | 4_2:+36618352 | None:intergenic |
| TCAGAGAAATGATGTCCTCC+GGG | 0.578637 | 4_2:+36618439 | None:intergenic |
| GCAACATAATACAACACTCA+TGG | 0.584501 | 4_2:-36616120 | Msa0598880:three_prime_UTR |
| TGTATGTAAGGATCAATCAA+GGG | 0.589476 | 4_2:+36618495 | None:intergenic |
| TTCAGGAGGCAAGAAAGAAG+AGG | 0.592752 | 4_2:-36617269 | Msa0598880:intron |
| TGCGGCTCCGCGTACGAGAG+AGG | 0.592826 | 4_2:+36618397 | None:intergenic |
| ACATTATTATTACTAACTGA+AGG | 0.610008 | 4_2:-36615867 | Msa0598880:three_prime_UTR |
| TACGCAGTCGTTTAATAACC+CGG | 0.620625 | 4_2:-36618457 | Msa0598880:five_prime_UTR |
| TTGCAGACAATGAATATTTG+GGG | 0.625141 | 4_2:-36616002 | Msa0598880:three_prime_UTR |
| AAGAACCTGCAGCTGCGGCG+AGG | 0.628297 | 4_2:+36618312 | None:intergenic |
| TTGGTGGAAGCGTCAGCTTG+AGG | 0.641134 | 4_2:-36616146 | Msa0598880:exon |
| AGGCAACTTTAGCGGAACCA+TGG | 0.643716 | 4_2:+36617523 | None:intergenic |
| ATTCAACTCATCCACCGCCG+TGG | 0.648831 | 4_2:-36618335 | Msa0598880:CDS |
| GTATGTAAGGATCAATCAAG+GGG | 0.652353 | 4_2:+36618496 | None:intergenic |
| ATCATGGCCTCTCTCGTACG+CGG | 0.653998 | 4_2:-36618404 | Msa0598880:CDS |
| TTGATTATTGCAGATCACCA+TGG | 0.656234 | 4_2:-36617540 | Msa0598880:intron |
| TGCAGACAATGAATATTTGG+GGG | 0.660569 | 4_2:-36616001 | Msa0598880:three_prime_UTR |
| CATGGTAATAATGTGTGCCG+GGG | 0.670469 | 4_2:-36616102 | Msa0598880:three_prime_UTR |
| CTGGGGACTAACATTCTATG+GGG | 0.689871 | 4_2:-36617305 | Msa0598880:CDS |
| TGGGGACTAACATTCTATGG+GGG | 0.723176 | 4_2:-36617304 | Msa0598880:CDS |
| AGTGATGCGAGTTAGAGATG+CGG | 0.731219 | 4_2:+36618379 | None:intergenic |
| TATGTAAGGATCAATCAAGG+GGG | 0.784566 | 4_2:+36618497 | None:intergenic |
| GCAGTCGTTTAATAACCCGG+AGG | 0.826193 | 4_2:-36618454 | Msa0598880:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAACTGAAATTTTATTT+TGG | - | chr4_2:36616185-36616204 | Msa0598880:intron | 10.0% |
| !! | AAAAAAAATGTATTATTGAT+TGG | - | chr4_2:36617502-36617521 | Msa0598880:CDS | 10.0% |
| !!! | TTTTTTATTAACCATATCAT+AGG | + | chr4_2:36616568-36616587 | None:intergenic | 15.0% |
| !!! | TTAAATCTTGTTTACATATT+TGG | - | chr4_2:36616599-36616618 | Msa0598880:intron | 15.0% |
| !!! | TAATTTTGATATATGTGAAA+TGG | - | chr4_2:36616768-36616787 | Msa0598880:intron | 15.0% |
| !!! | AGTAACATATTGTTATTTTA+TGG | + | chr4_2:36618375-36618394 | None:intergenic | 15.0% |
| !!! | GTATTGGATTAACATTTTAA+AGG | + | chr4_2:36615822-36615841 | None:intergenic | 20.0% |
| !! | TAAGTAAGTAAATAGAGAAA+TGG | + | chr4_2:36616058-36616077 | None:intergenic | 20.0% |
| !!! | TAAATTTGTGAGATTTTGAT+GGG | + | chr4_2:36616095-36616114 | None:intergenic | 20.0% |
| !!! | TTAAATTTGTGAGATTTTGA+TGG | + | chr4_2:36616096-36616115 | None:intergenic | 20.0% |
| !! | ATATTAGCTATTAAATGACA+AGG | - | chr4_2:36616271-36616290 | Msa0598880:intron | 20.0% |
| !! | TATTAGCTATTAAATGACAA+GGG | - | chr4_2:36616272-36616291 | Msa0598880:intron | 20.0% |
| !!! | TTTTACCATTCTTAACTATA+AGG | + | chr4_2:36616456-36616475 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTGGATAAATTAA+TGG | - | chr4_2:36616645-36616664 | Msa0598880:intron | 20.0% |
| !!! | ATTAATGGACTAATGATATA+AGG | - | chr4_2:36616660-36616679 | Msa0598880:intron | 20.0% |
| !!! | TGTTATTTTTTACATTGAGA+TGG | - | chr4_2:36616932-36616951 | Msa0598880:intron | 20.0% |
| !!! | AAATCTCTAGTTTTAAGTTT+TGG | - | chr4_2:36617358-36617377 | Msa0598880:intron | 20.0% |
| !!! | AATCTCTAGTTTTAAGTTTT+GGG | - | chr4_2:36617359-36617378 | Msa0598880:intron | 20.0% |
| !!! | TTTTTGTTTGTCTTTCATTT+GGG | + | chr4_2:36617486-36617505 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTTGTCTTTCATT+TGG | + | chr4_2:36617487-36617506 | None:intergenic | 20.0% |
| !!! | TTTTCTTCTGTAATAAATCT+AGG | + | chr4_2:36617531-36617550 | None:intergenic | 20.0% |
| !!! | ATATGATTATTTGAGCTTTT+AGG | - | chr4_2:36617830-36617849 | Msa0598880:intron | 20.0% |
| !!! | TTTTAGGAAAAATGTTAGAT+GGG | - | chr4_2:36617846-36617865 | Msa0598880:intron | 20.0% |
| !!! | TTGTAGACTAAAACTTTTAT+TGG | + | chr4_2:36618022-36618041 | None:intergenic | 20.0% |
| !! | ACATTATTATTACTAACTGA+AGG | - | chr4_2:36618473-36618492 | Msa0598880:five_prime_UTR | 20.0% |
| !!! | TCATAGAGTATTTGATAATA+TGG | + | chr4_2:36618517-36618536 | None:intergenic | 20.0% |
| ! | TGATCCTTACATACATAAAA+AGG | - | chr4_2:36615853-36615872 | Msa0598880:three_prime_UTR | 25.0% |
| !! | TAAGCCTTTTTATGTATGTA+AGG | + | chr4_2:36615860-36615879 | None:intergenic | 25.0% |
| !!! | TTAAAGCTGCAATTTAGTTT+TGG | - | chr4_2:36616242-36616261 | Msa0598880:intron | 25.0% |
| ! | ATATTATTATTCCTTCCCAT+AGG | + | chr4_2:36616358-36616377 | None:intergenic | 25.0% |
| ! | AGTTAAGAATGGTAAAAATG+TGG | - | chr4_2:36616459-36616478 | Msa0598880:intron | 25.0% |
| !! | TTTGAACAAACAATTGACTT+TGG | - | chr4_2:36616627-36616646 | Msa0598880:intron | 25.0% |
| !!! | ATTTTTTACATTGAGATGGT+TGG | - | chr4_2:36616936-36616955 | Msa0598880:intron | 25.0% |
| !!! | ATATTCTTTTGAGTTTTGTC+TGG | - | chr4_2:36616972-36616991 | Msa0598880:intron | 25.0% |
| !!! | TAGTTTTAAGTTTTGGGTAT+AGG | - | chr4_2:36617365-36617384 | Msa0598880:intron | 25.0% |
| !! | ATTTTCAATTCCAACCTTTT+AGG | + | chr4_2:36617614-36617633 | None:intergenic | 25.0% |
| !!! | CTTTTAGGAAAAATGTTAGA+TGG | - | chr4_2:36617845-36617864 | Msa0598880:intron | 25.0% |
| ! | AGAACAGTAATGTTTAAATC+AGG | - | chr4_2:36618049-36618068 | Msa0598880:intron | 25.0% |
| ! | ATCAATGATAACAAAGCAAA+AGG | + | chr4_2:36618312-36618331 | None:intergenic | 25.0% |
| TGTATGTAAGGATCAATCAA+GGG | + | chr4_2:36615848-36615867 | None:intergenic | 30.0% | |
| ATGTATGTAAGGATCAATCA+AGG | + | chr4_2:36615849-36615868 | None:intergenic | 30.0% | |
| GGATTTGGATTTGAATTAGT+TGG | + | chr4_2:36616134-36616153 | None:intergenic | 30.0% | |
| TGTAATATGCAATTCAGACA+TGG | + | chr4_2:36616155-36616174 | None:intergenic | 30.0% | |
| !! | CAAACAATTGACTTTGGTTT+TGG | - | chr4_2:36616633-36616652 | Msa0598880:intron | 30.0% |
| TATAAGGACGAATAGATGTT+TGG | - | chr4_2:36616676-36616695 | Msa0598880:intron | 30.0% | |
| TTAAAGAGACAATCACAAAC+TGG | + | chr4_2:36617011-36617030 | None:intergenic | 30.0% | |
| TTTGTGATTGTCTCTTTAAC+TGG | - | chr4_2:36617012-36617031 | Msa0598880:intron | 30.0% | |
| TAGCTACGAGCTAATAAATA+TGG | + | chr4_2:36617136-36617155 | None:intergenic | 30.0% | |
| AAGTCAGCTATAATCAAACA+AGG | + | chr4_2:36617181-36617200 | None:intergenic | 30.0% | |
| ! | CCATATGCACTATTTTACTA+CGG | + | chr4_2:36617240-36617259 | None:intergenic | 30.0% |
| AGAAGTTTCTCAGACAATTA+TGG | + | chr4_2:36617298-36617317 | None:intergenic | 30.0% | |
| !! | CAGAAACTGTACTTTTTGAT+TGG | - | chr4_2:36617407-36617426 | Msa0598880:intron | 30.0% |
| !!! | AAATCTGCCGTTTTATATGT+TGG | - | chr4_2:36617451-36617470 | Msa0598880:intron | 30.0% |
| !!! | AATCTGCCGTTTTATATGTT+GGG | - | chr4_2:36617452-36617471 | Msa0598880:intron | 30.0% |
| CCTATACCCAACATATAAAA+CGG | + | chr4_2:36617461-36617480 | None:intergenic | 30.0% | |
| TTAGAGGAAAACTGTTTATG+TGG | + | chr4_2:36617699-36617718 | None:intergenic | 30.0% | |
| ATGTTTAAATCAGGACTTGT+TGG | - | chr4_2:36618058-36618077 | Msa0598880:intron | 30.0% | |
| ! | CACTGAATTTTTGCAGAAAT+TGG | - | chr4_2:36618175-36618194 | Msa0598880:intron | 30.0% |
| ! | TGAATTTTTGCAGAAATTGG+TGG | - | chr4_2:36618178-36618197 | Msa0598880:intron | 30.0% |
| CTTGCAGACAATGAATATTT+GGG | - | chr4_2:36618337-36618356 | Msa0598880:CDS | 30.0% | |
| TTGCAGACAATGAATATTTG+GGG | - | chr4_2:36618338-36618357 | Msa0598880:CDS | 30.0% | |
| ATTCAGGAATTGGCATAAAT+GGG | + | chr4_2:36618414-36618433 | None:intergenic | 30.0% | |
| TATCAAATACTCTATGATCC+TGG | - | chr4_2:36618520-36618539 | Msa0598880:five_prime_UTR | 30.0% | |
| TATGTAAGGATCAATCAAGG+GGG | + | chr4_2:36615846-36615865 | None:intergenic | 35.0% | |
| GTATGTAAGGATCAATCAAG+GGG | + | chr4_2:36615847-36615866 | None:intergenic | 35.0% | |
| !! | TTGTGAGATTTTGATGGGAT+CGG | + | chr4_2:36616090-36616109 | None:intergenic | 35.0% |
| ATGCAATTCAGACATGGATT+TGG | + | chr4_2:36616149-36616168 | None:intergenic | 35.0% | |
| GGTTTGAATTGTTCTGTGAT+TGG | - | chr4_2:36616206-36616225 | Msa0598880:intron | 35.0% | |
| GTCTCGAATATGATTATCTC+CGG | - | chr4_2:36616323-36616342 | Msa0598880:intron | 35.0% | |
| AAACATTACGACAAACTGAG+TGG | - | chr4_2:36616386-36616405 | Msa0598880:intron | 35.0% | |
| GAATCCAAGACTTTGCTAAA+GGG | + | chr4_2:36616426-36616445 | None:intergenic | 35.0% | |
| CTTTAGCAAAGTCTTGGATT+CGG | - | chr4_2:36616425-36616444 | Msa0598880:intron | 35.0% | |
| ! | TCGAGCCTTATAGTTAAGAA+TGG | - | chr4_2:36616448-36616467 | Msa0598880:intron | 35.0% |
| GGTAAAAATGTGGTTTAGTG+TGG | - | chr4_2:36616469-36616488 | Msa0598880:intron | 35.0% | |
| CTATCTAACCATCGTTAGTA+AGG | + | chr4_2:36616498-36616517 | None:intergenic | 35.0% | |
| TGGTTAGATAGATTCGTTAG+CGG | - | chr4_2:36616507-36616526 | Msa0598880:intron | 35.0% | |
| TTGATTATTGCAGATCACCA+TGG | - | chr4_2:36616800-36616819 | Msa0598880:intron | 35.0% | |
| TCCATTTAGAAGGACTCATT+GGG | + | chr4_2:36616853-36616872 | None:intergenic | 35.0% | |
| TTCCATTTAGAAGGACTCAT+TGG | + | chr4_2:36616854-36616873 | None:intergenic | 35.0% | |
| AATGAGTCCTTCTAAATGGA+AGG | - | chr4_2:36616853-36616872 | Msa0598880:intron | 35.0% | |
| !! | GGATACAAGTTATTTTCAGG+AGG | - | chr4_2:36617057-36617076 | Msa0598880:intron | 35.0% |
| CCGTAGTAAAATAGTGCATA+TGG | - | chr4_2:36617237-36617256 | Msa0598880:intron | 35.0% | |
| TGGATATATTGTCCTGTACA+TGG | + | chr4_2:36617278-36617297 | None:intergenic | 35.0% | |
| ! | CCGTTTTATATGTTGGGTAT+AGG | - | chr4_2:36617458-36617477 | Msa0598880:intron | 35.0% |
| AAATAGCTCTCGGGTTATTT+GGG | + | chr4_2:36617556-36617575 | None:intergenic | 35.0% | |
| CTGTCTTTGTTCAACCTAAA+AGG | - | chr4_2:36617597-36617616 | Msa0598880:intron | 35.0% | |
| CTTTGTTCAACCTAAAAGGT+TGG | - | chr4_2:36617601-36617620 | Msa0598880:intron | 35.0% | |
| AATACAGAACAGAGGGAAAA+TGG | + | chr4_2:36617657-36617676 | None:intergenic | 35.0% | |
| ! | TTTTCCCTCTGTTCTGTATT+CGG | - | chr4_2:36617657-36617676 | Msa0598880:intron | 35.0% |
| GAAAACTGTTTATGTGGTAG+TGG | + | chr4_2:36617693-36617712 | None:intergenic | 35.0% | |
| CAATACTCCAATGAATCAGT+AGG | - | chr4_2:36617880-36617899 | Msa0598880:intron | 35.0% | |
| !! | TTCCATTCCTACTGATTCAT+TGG | + | chr4_2:36617890-36617909 | None:intergenic | 35.0% |
| GCAACATAATACAACACTCA+TGG | - | chr4_2:36618220-36618239 | Msa0598880:intron | 35.0% | |
| !!! | TTTTCGCGTTTTTTCAGACT+CGG | - | chr4_2:36618265-36618284 | Msa0598880:intron | 35.0% |
| CCAAATATTCATTGTCTGCA+AGG | + | chr4_2:36618339-36618358 | None:intergenic | 35.0% | |
| CCTTGCAGACAATGAATATT+TGG | - | chr4_2:36618336-36618355 | Msa0598880:CDS | 35.0% | |
| TGCAGACAATGAATATTTGG+GGG | - | chr4_2:36618339-36618358 | Msa0598880:CDS | 35.0% | |
| GATTCAGGAATTGGCATAAA+TGG | + | chr4_2:36618415-36618434 | None:intergenic | 35.0% | |
| TGAAATCAGGATTCAGGAAT+TGG | + | chr4_2:36618424-36618443 | None:intergenic | 35.0% | |
| TTGCAAACGTAGTTGAAATC+AGG | + | chr4_2:36618437-36618456 | None:intergenic | 35.0% | |
| TACGCAGTCGTTTAATAACC+CGG | - | chr4_2:36615883-36615902 | Msa0598880:three_prime_UTR | 40.0% | |
| TTCAGAGAAATGATGTCCTC+CGG | + | chr4_2:36615905-36615924 | None:intergenic | 40.0% | |
| ! | CTGAAGCTTGATAGCAATCA+TGG | - | chr4_2:36615920-36615939 | Msa0598880:three_prime_UTR | 40.0% |
| TTGAATGGGAGATTTGGATG+AGG | + | chr4_2:36615991-36616010 | None:intergenic | 40.0% | |
| ! | GATGAGTTGAATGGGAGATT+TGG | + | chr4_2:36615997-36616016 | None:intergenic | 40.0% |
| TCGAATATGATTATCTCCGG+TGG | - | chr4_2:36616326-36616345 | Msa0598880:intron | 40.0% | |
| AATATGATTATCTCCGGTGG+AGG | - | chr4_2:36616329-36616348 | Msa0598880:intron | 40.0% | |
| TACGACAAACTGAGTGGAAT+TGG | - | chr4_2:36616392-36616411 | Msa0598880:intron | 40.0% | |
| GAATCCCTTTAGCAAAGTCT+TGG | - | chr4_2:36616419-36616438 | Msa0598880:intron | 40.0% | |
| CGAATCCAAGACTTTGCTAA+AGG | + | chr4_2:36616427-36616446 | None:intergenic | 40.0% | |
| ! | AGATTAGTTATCGCACCAGT+CGG | - | chr4_2:36616530-36616549 | Msa0598880:intron | 40.0% |
| GGATGCTTCAACCTATGATA+TGG | - | chr4_2:36616554-36616573 | Msa0598880:intron | 40.0% | |
| ACCCAATGAGTCCTTCTAAA+TGG | - | chr4_2:36616849-36616868 | Msa0598880:intron | 40.0% | |
| TGCTCTTCCTTCCATTTAGA+AGG | + | chr4_2:36616863-36616882 | None:intergenic | 40.0% | |
| AAGAGACAATCACAAACTGG+AGG | + | chr4_2:36617008-36617027 | None:intergenic | 40.0% | |
| TGATTGTCTCTTTAACTGGC+TGG | - | chr4_2:36617016-36617035 | Msa0598880:intron | 40.0% | |
| GATTGTCTCTTTAACTGGCT+GGG | - | chr4_2:36617017-36617036 | Msa0598880:intron | 40.0% | |
| ATTGTCTCTTTAACTGGCTG+GGG | - | chr4_2:36617018-36617037 | Msa0598880:intron | 40.0% | |
| !! | GGGGGATACAAGTTATTTTC+AGG | - | chr4_2:36617054-36617073 | Msa0598880:intron | 40.0% |
| TTAGTTCCTTGACCATGTAC+AGG | - | chr4_2:36617263-36617282 | Msa0598880:intron | 40.0% | |
| TATTGTCCTGTACATGGTCA+AGG | + | chr4_2:36617272-36617291 | None:intergenic | 40.0% | |
| GAAATAGCTCTCGGGTTATT+TGG | + | chr4_2:36617557-36617576 | None:intergenic | 40.0% | |
| ! | ACAGCATTATCTTTTCTCCG+AGG | + | chr4_2:36617581-36617600 | None:intergenic | 40.0% |
| AGAACAGAGGGAAAATGGAA+AGG | + | chr4_2:36617652-36617671 | None:intergenic | 40.0% | |
| !! | AACTGTTTATGTGGTAGTGG+AGG | + | chr4_2:36617690-36617709 | None:intergenic | 40.0% |
| TCCCTACTCAACCTCTTTAT+CGG | - | chr4_2:36617721-36617740 | Msa0598880:intron | 40.0% | |
| CTCCAATGAATCAGTAGGAA+TGG | - | chr4_2:36617885-36617904 | Msa0598880:intron | 40.0% | |
| ACAAAACAAGCCATCTAACC+AGG | + | chr4_2:36618085-36618104 | None:intergenic | 40.0% | |
| CTCATGGTAATAATGTGTGC+CGG | - | chr4_2:36618236-36618255 | Msa0598880:intron | 40.0% | |
| TCATGGTAATAATGTGTGCC+GGG | - | chr4_2:36618237-36618256 | Msa0598880:intron | 40.0% | |
| AAAAACGCGAAAAAAGTCCC+CGG | + | chr4_2:36618258-36618277 | None:intergenic | 40.0% | |
| CGTAGTTGAAATCAGGATTC+AGG | + | chr4_2:36618430-36618449 | None:intergenic | 40.0% | |
| ! | GATCAATCAAGGGGGTGTAT+TGG | + | chr4_2:36615838-36615857 | None:intergenic | 45.0% |
| TCAGAGAAATGATGTCCTCC+GGG | + | chr4_2:36615904-36615923 | None:intergenic | 45.0% | |
| AGTGATGCGAGTTAGAGATG+CGG | + | chr4_2:36615964-36615983 | None:intergenic | 45.0% | |
| GAAAAAAGAACCTGCAGCTG+CGG | + | chr4_2:36616036-36616055 | None:intergenic | 45.0% | |
| CAGACACTGAGCATTAAGCT+CGG | + | chr4_2:36616299-36616318 | None:intergenic | 45.0% | |
| TGTGGAGACCTTACTAACGA+TGG | - | chr4_2:36616487-36616506 | Msa0598880:intron | 45.0% | |
| TTTCCAGCAGGCAACTTTAG+CGG | + | chr4_2:36616828-36616847 | None:intergenic | 45.0% | |
| GCTGGGGACTAACATTCTAT+GGG | - | chr4_2:36617034-36617053 | Msa0598880:intron | 45.0% | |
| CTGGGGACTAACATTCTATG+GGG | - | chr4_2:36617035-36617054 | Msa0598880:intron | 45.0% | |
| TGGGGACTAACATTCTATGG+GGG | - | chr4_2:36617036-36617055 | Msa0598880:intron | 45.0% | |
| TTCAGGAGGCAAGAAAGAAG+AGG | - | chr4_2:36617071-36617090 | Msa0598880:intron | 45.0% | |
| GCAACCGAATACAGAACAGA+GGG | + | chr4_2:36617664-36617683 | None:intergenic | 45.0% | |
| !! | GTTTATGTGGTAGTGGAGGT+TGG | + | chr4_2:36617686-36617705 | None:intergenic | 45.0% |
| AGGTTGAGTAGGGAAGTTAG+AGG | + | chr4_2:36617715-36617734 | None:intergenic | 45.0% | |
| CCCGATAAAGAGGTTGAGTA+GGG | + | chr4_2:36617725-36617744 | None:intergenic | 45.0% | |
| CCCTACTCAACCTCTTTATC+GGG | - | chr4_2:36617722-36617741 | Msa0598880:intron | 45.0% | |
| TCAACCTCTTTATCGGGCTT+AGG | - | chr4_2:36617728-36617747 | Msa0598880:intron | 45.0% | |
| CCTGTTAGGATACCTGGTTT+GGG | + | chr4_2:36617754-36617773 | None:intergenic | 45.0% | |
| ACCTGTTAGGATACCTGGTT+TGG | + | chr4_2:36617755-36617774 | None:intergenic | 45.0% | |
| !! | AAATCAGGACTTGTTGGTCC+TGG | - | chr4_2:36618064-36618083 | Msa0598880:intron | 45.0% |
| ! | ACTTGTTGGTCCTGGTTAGA+TGG | - | chr4_2:36618072-36618091 | Msa0598880:intron | 45.0% |
| CCGTGAGTAAAGAGAAGACT+CGG | + | chr4_2:36618151-36618170 | None:intergenic | 45.0% | |
| CCGAGTCTTCTCTTTACTCA+CGG | - | chr4_2:36618148-36618167 | Msa0598880:intron | 45.0% | |
| CATGGTAATAATGTGTGCCG+GGG | - | chr4_2:36618238-36618257 | Msa0598880:intron | 45.0% | |
| GCAGTCGTTTAATAACCCGG+AGG | - | chr4_2:36615886-36615905 | Msa0598880:three_prime_UTR | 50.0% | |
| TTCCCATAGGTTACCTCCAC+CGG | + | chr4_2:36616345-36616364 | None:intergenic | 50.0% | |
| TTAGTTATCGCACCAGTCGG+TGG | - | chr4_2:36616533-36616552 | Msa0598880:intron | 50.0% | |
| AGGCAACTTTAGCGGAACCA+TGG | + | chr4_2:36616820-36616839 | None:intergenic | 50.0% | |
| ACTCATTGGGTCTTTCCAGC+AGG | + | chr4_2:36616840-36616859 | None:intergenic | 50.0% | |
| GGCTGGGGACTAACATTCTA+TGG | - | chr4_2:36617033-36617052 | Msa0598880:intron | 50.0% | |
| !! | ACCCGAGAGCTATTTCTCCT+CGG | - | chr4_2:36617561-36617580 | Msa0598880:intron | 50.0% |
| TCCGAGGAGAAATAGCTCTC+GGG | + | chr4_2:36617565-36617584 | None:intergenic | 50.0% | |
| CTCCGAGGAGAAATAGCTCT+CGG | + | chr4_2:36617566-36617585 | None:intergenic | 50.0% | |
| GGCAACCGAATACAGAACAG+AGG | + | chr4_2:36617665-36617684 | None:intergenic | 50.0% | |
| GCCCGATAAAGAGGTTGAGT+AGG | + | chr4_2:36617726-36617745 | None:intergenic | 50.0% | |
| CCCAAACCAGGTATCCTAAC+AGG | - | chr4_2:36617751-36617770 | Msa0598880:intron | 50.0% | |
| CAGGAACCTGTTAGGATACC+TGG | + | chr4_2:36617760-36617779 | None:intergenic | 50.0% | |
| TGTAGTTGCTTCAGAGCAGC+AGG | + | chr4_2:36617779-36617798 | None:intergenic | 50.0% | |
| ATCATGGCCTCTCTCGTACG+CGG | - | chr4_2:36615936-36615955 | Msa0598880:three_prime_UTR | 55.0% | |
| ! | CGGCGGTGGATGAGTTGAAT+GGG | + | chr4_2:36616005-36616024 | None:intergenic | 55.0% |
| ! | ACGGCGGTGGATGAGTTGAA+TGG | + | chr4_2:36616006-36616025 | None:intergenic | 55.0% |
| ATTCAACTCATCCACCGCCG+TGG | - | chr4_2:36616005-36616024 | Msa0598880:three_prime_UTR | 55.0% | |
| TCTCCGGTGGAGGTAACCTA+TGG | - | chr4_2:36616339-36616358 | Msa0598880:intron | 55.0% | |
| CTCCGGTGGAGGTAACCTAT+GGG | - | chr4_2:36616340-36616359 | Msa0598880:intron | 55.0% | |
| GGTGGAGGTAACCTATGGGA+AGG | - | chr4_2:36616344-36616363 | Msa0598880:intron | 55.0% | |
| ! | AGGTTGAAGCATCCACCGAC+TGG | + | chr4_2:36616548-36616567 | None:intergenic | 55.0% |
| GTTCCGCTAAAGTTGCCTGC+TGG | - | chr4_2:36616822-36616841 | Msa0598880:intron | 55.0% | |
| TGGGCCTAAGCCCGATAAAG+AGG | + | chr4_2:36617735-36617754 | None:intergenic | 55.0% | |
| CAGAGCAGCAGGAACCTGTT+AGG | + | chr4_2:36617768-36617787 | None:intergenic | 55.0% | |
| !! | TTGGTGGAAGCGTCAGCTTG+AGG | - | chr4_2:36618194-36618213 | Msa0598880:intron | 55.0% |
| ATCGGGCTTAGGCCCAAACC+AGG | - | chr4_2:36617739-36617758 | Msa0598880:intron | 60.0% | |
| AAGAACCTGCAGCTGCGGCG+AGG | + | chr4_2:36616031-36616050 | None:intergenic | 65.0% | |
| TGCGGCTCCGCGTACGAGAG+AGG | + | chr4_2:36615946-36615965 | None:intergenic | 70.0% | |
| CTGCAGCTGCGGCGAGGCCA+CGG | + | chr4_2:36616025-36616044 | None:intergenic | 75.0% | |
| ! | CAGCTGCGGCGAGGCCACGG+CGG | + | chr4_2:36616022-36616041 | None:intergenic | 80.0% |
| ! | CGTGGCCTCGCCGCAGCTGC+AGG | - | chr4_2:36616023-36616042 | Msa0598880:three_prime_UTR | 80.0% |
| ! | CTGCGGCGAGGCCACGGCGG+TGG | + | chr4_2:36616019-36616038 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 36615817 | 36618545 | 36615817 | ID=Msa0598880;Name=Msa0598880 |
| chr4_2 | mRNA | 36615817 | 36618545 | 36615817 | ID=Msa0598880-mRNA-1;Parent=Msa0598880;Name=Msa0598880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=122|1|1|1|0.66|0.75|4|331|93 |
| chr4_2 | exon | 36615817 | 36616171 | 36615817 | ID=Msa0598880-mRNA-1:exon:8308;Parent=Msa0598880-mRNA-1 |
| chr4_2 | exon | 36617270 | 36617350 | 36617270 | ID=Msa0598880-mRNA-1:exon:8307;Parent=Msa0598880-mRNA-1 |
| chr4_2 | exon | 36617479 | 36617549 | 36617479 | ID=Msa0598880-mRNA-1:exon:8306;Parent=Msa0598880-mRNA-1 |
| chr4_2 | exon | 36618318 | 36618545 | 36618318 | ID=Msa0598880-mRNA-1:exon:8305;Parent=Msa0598880-mRNA-1 |
| chr4_2 | five_prime_UTR | 36618424 | 36618545 | 36618424 | ID=Msa0598880-mRNA-1:five_prime_utr;Parent=Msa0598880-mRNA-1 |
| chr4_2 | CDS | 36618318 | 36618423 | 36618318 | ID=Msa0598880-mRNA-1:cds;Parent=Msa0598880-mRNA-1 |
| chr4_2 | CDS | 36617479 | 36617549 | 36617479 | ID=Msa0598880-mRNA-1:cds;Parent=Msa0598880-mRNA-1 |
| chr4_2 | CDS | 36617270 | 36617350 | 36617270 | ID=Msa0598880-mRNA-1:cds;Parent=Msa0598880-mRNA-1 |
| chr4_2 | CDS | 36616148 | 36616171 | 36616148 | ID=Msa0598880-mRNA-1:cds;Parent=Msa0598880-mRNA-1 |
| chr4_2 | three_prime_UTR | 36615817 | 36616147 | 36615817 | ID=Msa0598880-mRNA-1:three_prime_utr;Parent=Msa0598880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
