AlfalfaGEDB | Msa0341500

M. sativa cultivar zhongmu-4 / Msa0341500

KEGG: K09753
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576
PFAM: PF01370.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0341500	XP_013465595.1	92.105	342	6	2	1	321	1	342	0.0	631

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0341500	sp\|A0A059TC02\|CCR1_PETHY	74.923	323	61	1	13	315	3	325	1.40e-180	504

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0259650	Msa0341500	0.886844	2.400510e-72	-8.615850e-47
Msa0341500	Msa1079360	0.835334	1.783122e-56	-8.615850e-47
Msa0341500	Msa1284990	0.816136	6.461578e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0341500	MtrunA17_Chr2g0333781	92.105	342	6	2	1	321	1	342	0.0	631
Msa0341500	MtrunA17_Chr4g0001321	74.174	333	63	4	7	316	3	335	1.88e-177	494
Msa0341500	MtrunA17_Chr3g0077231	43.519	324	154	7	14	310	1	322	6.55e-87	263
Msa0341500	MtrunA17_Chr3g0077221	45.031	322	148	7	11	305	2	321	8.28e-87	263
Msa0341500	MtrunA17_Chr4g0039311	44.795	317	146	7	16	305	8	322	4.60e-83	254
Msa0341500	MtrunA17_Chr4g0002661	43.260	319	152	4	15	308	9	323	3.62e-82	251
Msa0341500	MtrunA17_Chr4g0039321	43.925	321	151	8	12	305	2	320	8.35e-82	251
Msa0341500	MtrunA17_Chr5g0431311	41.693	319	159	4	17	309	3	320	1.33e-81	250
Msa0341500	MtrunA17_Chr8g0364051	42.857	322	154	8	16	310	5	323	2.97e-77	239
Msa0341500	MtrunA17_Chr3g0106111	40.506	316	161	4	17	306	3	317	1.90e-75	234

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0341500	AT1G15950.3	72.013	318	69	1	12	309	6	323	3.87e-160	451
Msa0341500	AT1G15950.1	72.013	318	69	1	12	309	6	323	3.87e-160	451
Msa0341500	AT1G80820.1	68.405	326	83	1	14	319	3	328	8.89e-157	442
Msa0341500	AT1G15950.2	71.987	307	66	1	12	298	6	312	8.92e-153	432
Msa0341500	AT1G15950.4	72.364	275	56	1	12	266	6	280	1.15e-132	379
Msa0341500	AT1G15950.6	73.063	271	53	1	12	262	6	276	1.49e-132	378
Msa0341500	AT1G15950.5	72.963	270	53	1	12	261	6	275	1.09e-131	376
Msa0341500	AT1G80820.2	70.260	269	60	1	14	262	3	271	2.78e-127	365
Msa0341500	AT1G15950.7	72.889	225	41	1	105	309	1	225	2.97e-104	305
Msa0341500	AT5G19440.1	45.511	323	147	7	11	306	2	322	3.11e-90	273

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Find 128 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAAGGATTTGGGAT+TGG	0.468538	2_4:+63169292	Msa0341500:CDS
AAAGGTGACCTTGGTCTTGT+AGG	0.380163	2_4:-63169358	None:intergenic
AAATGGGCACTTGAAAGAGT+TGG	0.499323	2_4:+63166221	Msa0341500:CDS
AACTGAGGAAGATTCTGCGG+CGG	0.669024	2_4:-63165736	None:intergenic
AACTTGTTAATAAAGGTGGT+TGG	0.518932	2_4:-63169423	None:intergenic
AAGGATGACAGTAATATAAT+GGG	0.423103	2_4:-63169594	None:intergenic
AAGTATCTACCAGAAGCAGA+AGG	0.665232	2_4:-63168290	None:intergenic
AAGTTGGTGTGACGTGACAG+TGG	0.683204	2_4:-63165612	None:intergenic
AATGAGTGGGATAGAGAAGA+AGG	0.485430	2_4:-63165648	None:intergenic
AATGGTCCAAGAACCAAAAC+TGG	0.452263	2_4:-63168128	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGACAGTGGAATAATAATT+GGG	-	chr2_4:63165602-63165621	None:intergenic	30.0%
AGGTGGTGATAAATTAAAGT+TGG	-	chr2_4:63165631-63165650	None:intergenic	30.0%
AGTTGAATGAATGAATGAGT+GGG	-	chr2_4:63165664-63165683	None:intergenic	30.0%
CTTCTTCTTCTTCTTGTAAA+GGG	-	chr2_4:63165687-63165706	None:intergenic	30.0%
TCTTCTTCTTCTTCTTGTAA+AGG	-	chr2_4:63165688-63165707	None:intergenic	30.0%
AATGTAATTATATGCGGCAT+CGG	-	chr2_4:63166040-63166059	None:intergenic	30.0%
CTTACTCTCTAATCTATCTT+AGG	+	chr2_4:63166485-63166504	Msa0341500:intron	30.0%
TAAAAAGAAGCAAGCAATCA+AGG	-	chr2_4:63166965-63166984	None:intergenic	30.0%
TCTTCCTAATAATATGCTCA+TGG	+	chr2_4:63167225-63167244	Msa0341500:intron	30.0%
CTTCCTAATAATATGCTCAT+GGG	+	chr2_4:63167226-63167245	Msa0341500:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	63165496	63170185	63165496	ID=Msa0341500;Name=Msa0341500
chr2_4	mRNA	63165496	63170185	63165496	ID=Msa0341500-mRNA-1;Parent=Msa0341500;Name=Msa0341500-mRNA-1;_AED=0.04;_eAED=0.04;_QI=221\|0.75\|0.8\|1\|0.75\|0.8\|5\|764\|321
chr2_4	exon	63165496	63165867	63165496	ID=Msa0341500-mRNA-1:exon:20126;Parent=Msa0341500-mRNA-1
chr2_4	exon	63166211	63166365	63166211	ID=Msa0341500-mRNA-1:exon:20127;Parent=Msa0341500-mRNA-1
chr2_4	exon	63167349	63167534	63167349	ID=Msa0341500-mRNA-1:exon:20128;Parent=Msa0341500-mRNA-1
chr2_4	exon	63168101	63168393	63168101	ID=Msa0341500-mRNA-1:exon:20129;Parent=Msa0341500-mRNA-1
chr2_4	exon	63169241	63170185	63169241	ID=Msa0341500-mRNA-1:exon:20130;Parent=Msa0341500-mRNA-1
chr2_4	five_prime_UTR	63165496	63165716	63165496	ID=Msa0341500-mRNA-1:five_prime_utr;Parent=Msa0341500-mRNA-1
chr2_4	CDS	63165717	63165867	63165717	ID=Msa0341500-mRNA-1:cds;Parent=Msa0341500-mRNA-1
chr2_4	CDS	63166211	63166365	63166211	ID=Msa0341500-mRNA-1:cds;Parent=Msa0341500-mRNA-1
chr2_4	CDS	63167349	63167534	63167349	ID=Msa0341500-mRNA-1:cds;Parent=Msa0341500-mRNA-1
chr2_4	CDS	63168101	63168393	63168101	ID=Msa0341500-mRNA-1:cds;Parent=Msa0341500-mRNA-1
chr2_4	CDS	63169241	63169421	63169241	ID=Msa0341500-mRNA-1:cds;Parent=Msa0341500-mRNA-1
chr2_4	three_prime_UTR	63169422	63170185	63169422	ID=Msa0341500-mRNA-1:three_prime_utr;Parent=Msa0341500-mRNA-1

Gene Sequence

>Msa0341500

ATGCCTGCTGCTACCACCGCCGCCGCAGAATCTTCCTCAGTTTCCGGCGAAACAATATGTGTCACTGGCGCTGGTGGCTTCATCGCTTCTTGGATGGTTAAGCTCCTCTTGGAGAAAGGCTATACTGTTAGAGGAACCTTGCGAAACCCAGATGATCCAAAAAATGGGCACTTGAAAGAGTTGGAAGGAGCAAAGGAAAGGCTAACTTTGGTCAAAGTTGATCTCCTTGATCTTAACTCCGTTAAAGAAGCCGTTAATGGATGTCATGGTGTCTTTCACACTGCTTCTCCCGTTACAGATAACCCCGAGGAAATGGTGGAGCCAGCAGTGAATGGAGCAAAGAATGTGATCATAGCTGCAGCAGAAGCAAAAGTGAGGCGCGTGGTTTTCACATCATCAATTGGCGCAGTCTATATGGACCCCAATAGGAGTGTTGATGTTGAGGTTGATGAGTCTTGCTGGAGTGATTTGGAATTTTGCAAGAACACCAAGAAAGGGGTGGATTTAGTTGTAGTGAATCCAGTTTTGGTTCTTGGACCATTGCTACAACCTACAATCAATGCAAGCACAATTCACATACTAAAGTACCTAACTGGTTCAGCTAAGACCTATGCAAATGCAACACAAGCTTATGTTCATGTTAGGGATGTGGCATTAGCTCACATACTTGTTTATGAGAAACCTTCTGCTTCTGGTAGATACTTATGTGCTGAAAGTTCACTTCACCGTGGAGAGCTTGTTGAAATTCTTGCTAAGTATTTCCCTGAGTACCCAATTCCTACCAAGTGTTCAGATGAAAAGAATCCTCGAGTAAAACCACATATCTTCTCAAATAAAAAACTGAAGGATTTGGGATTGGAGTTCACTCCAGTGAGTGAATGTTTATATGAAACCGTTAAGAGCCTACAAGACCAAGGTCACCTTTCTATTCCAAACAAAGAAGATTCTCTAGAAGTCAAATCCTAA

Protein sequence

>Msa0341500

MPAATTAAAESSSVSGETICVTGAGGFIASWMVKLLLEKGYTVRGTLRNPDDPKNGHLKELEGAKERLTLVKVDLLDLNSVKEAVNGCHGVFHTASPVTDNPEEMVEPAVNGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPNRSVDVEVDESCWSDLEFCKNTKKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKPSASGRYLCAESSLHRGELVEILAKYFPEYPIPTKCSDEKNPRVKPHIFSNKKLKDLGLEFTPVSECLYETVKSLQDQGHLSIPNKEDSLEVKS*