AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0341500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341500 MtrunA17_Chr2g0333781 92.105 342 6 2 1 321 1 342 0.0 631
Msa0341500 MtrunA17_Chr4g0001321 74.174 333 63 4 7 316 3 335 1.88e-177 494
Msa0341500 MtrunA17_Chr3g0077231 43.519 324 154 7 14 310 1 322 6.55e-87 263
Msa0341500 MtrunA17_Chr3g0077221 45.031 322 148 7 11 305 2 321 8.28e-87 263
Msa0341500 MtrunA17_Chr4g0039311 44.795 317 146 7 16 305 8 322 4.60e-83 254
Msa0341500 MtrunA17_Chr4g0002661 43.260 319 152 4 15 308 9 323 3.62e-82 251
Msa0341500 MtrunA17_Chr4g0039321 43.925 321 151 8 12 305 2 320 8.35e-82 251
Msa0341500 MtrunA17_Chr5g0431311 41.693 319 159 4 17 309 3 320 1.33e-81 250
Msa0341500 MtrunA17_Chr8g0364051 42.857 322 154 8 16 310 5 323 2.97e-77 239
Msa0341500 MtrunA17_Chr3g0106111 40.506 316 161 4 17 306 3 317 1.90e-75 234
Msa0341500 MtrunA17_Chr8g0363831 42.902 317 151 7 16 305 6 319 4.45e-75 233
Msa0341500 MtrunA17_Chr4g0002961 43.438 320 152 4 15 309 9 324 4.99e-75 233
Msa0341500 MtrunA17_Chr5g0423551 40.881 318 158 8 19 308 4 319 3.34e-73 228
Msa0341500 MtrunA17_Chr1g0155411 38.769 325 161 11 17 308 6 325 4.59e-69 218
Msa0341500 MtrunA17_Chr2g0291541 39.752 322 161 6 17 308 8 326 5.87e-69 218
Msa0341500 MtrunA17_Chr1g0155431 38.650 326 162 10 16 308 5 325 8.82e-66 210
Msa0341500 MtrunA17_Chr2g0331211 36.991 319 170 6 19 309 5 320 3.83e-63 203
Msa0341500 MtrunA17_Chr7g0245741 33.231 325 176 11 19 308 8 326 1.58e-49 167
Msa0341500 MtrunA17_Chr7g0245641 34.969 326 172 13 19 308 45 366 2.49e-48 166
Msa0341500 MtrunA17_Chr7g0245671 35.671 328 167 14 19 308 8 329 3.89e-48 164
Msa0341500 MtrunA17_Chr7g0245731 33.951 324 175 11 19 308 58 376 6.05e-48 165
Msa0341500 MtrunA17_Chr4g0048961 34.154 325 173 9 20 306 15 336 6.75e-47 161
Msa0341500 MtrunA17_Chr7g0245691 32.121 330 177 11 19 308 8 330 3.46e-44 154
Msa0341500 MtrunA17_Chr4g0042101 32.635 334 175 9 20 308 25 353 1.24e-43 153
Msa0341500 MtrunA17_Chr4g0010991 31.385 325 187 10 18 308 7 329 1.23e-40 144
Msa0341500 MtrunA17_Chr7g0245631 32.198 323 182 12 19 308 8 326 1.19e-39 142
Msa0341500 MtrunA17_Chr7g0245711 31.449 283 157 9 58 308 11 288 7.72e-34 125
Msa0341500 MtrunA17_Chr5g0411071 29.316 307 178 9 9 288 2 296 4.65e-33 124
Msa0341500 MtrunA17_Chr2g0282001 28.994 338 191 10 19 310 7 341 7.76e-31 119
Msa0341500 MtrunA17_Chr7g0275521 28.302 318 175 11 19 288 7 319 4.86e-28 111
Msa0341500 MtrunA17_Chr2g0281991 27.811 338 195 10 19 310 8 342 3.70e-27 108
Msa0341500 MtrunA17_Chr6g0450211 29.392 296 170 9 19 281 55 344 1.29e-26 107
Msa0341500 MtrunA17_Chr2g0282011 28.616 318 173 10 19 288 8 319 1.10e-25 105
Msa0341500 MtrunA17_Chr3g0133771 27.119 236 145 8 19 235 4 231 7.97e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341500 AT1G15950.3 72.013 318 69 1 12 309 6 323 3.87e-160 451
Msa0341500 AT1G15950.1 72.013 318 69 1 12 309 6 323 3.87e-160 451
Msa0341500 AT1G80820.1 68.405 326 83 1 14 319 3 328 8.89e-157 442
Msa0341500 AT1G15950.2 71.987 307 66 1 12 298 6 312 8.92e-153 432
Msa0341500 AT1G15950.4 72.364 275 56 1 12 266 6 280 1.15e-132 379
Msa0341500 AT1G15950.6 73.063 271 53 1 12 262 6 276 1.49e-132 378
Msa0341500 AT1G15950.5 72.963 270 53 1 12 261 6 275 1.09e-131 376
Msa0341500 AT1G80820.2 70.260 269 60 1 14 262 3 271 2.78e-127 365
Msa0341500 AT1G15950.7 72.889 225 41 1 105 309 1 225 2.97e-104 305
Msa0341500 AT5G19440.1 45.511 323 147 7 11 306 2 322 3.11e-90 273
Msa0341500 AT1G51410.1 42.945 326 157 7 12 310 2 325 1.33e-81 250
Msa0341500 AT5G58490.1 42.947 319 155 4 17 309 7 324 5.16e-81 249
Msa0341500 AT2G02400.1 41.433 321 159 5 14 308 1 318 2.69e-79 244
Msa0341500 AT2G33590.1 44.695 311 142 6 19 303 9 315 4.18e-76 236
Msa0341500 AT1G09510.1 42.633 319 150 8 16 305 5 319 1.92e-73 229
Msa0341500 AT1G66800.1 43.827 324 135 12 16 305 5 315 2.83e-70 221
Msa0341500 AT1G76470.1 40.312 320 161 3 17 308 5 322 6.49e-69 218
Msa0341500 AT4G35420.1 39.623 318 162 8 19 309 8 322 1.01e-68 218
Msa0341500 AT1G68540.1 39.432 317 162 6 21 308 6 321 1.24e-68 217
Msa0341500 AT1G09490.1 40.498 321 160 8 16 308 5 322 4.83e-68 216
Msa0341500 AT1G09480.2 40.432 324 156 9 16 308 5 322 7.12e-68 215
Msa0341500 AT1G09480.1 40.432 324 156 9 16 308 52 369 1.61e-67 216
Msa0341500 AT1G09500.1 39.938 323 156 9 16 305 5 322 2.36e-63 204
Msa0341500 AT2G33600.1 41.801 311 151 6 19 303 9 315 5.26e-62 200
Msa0341500 AT1G25460.1 37.778 315 168 5 21 308 6 319 8.33e-62 199
Msa0341500 AT5G42800.1 37.538 325 169 10 17 310 6 327 1.22e-59 196
Msa0341500 AT1G09500.3 41.219 279 127 8 16 262 5 278 8.59e-59 190
Msa0341500 AT1G09490.2 37.544 285 148 7 51 308 10 291 1.00e-49 167
Msa0341500 AT2G45400.1 34.251 327 176 10 19 308 40 364 3.36e-48 166
Msa0341500 AT1G09500.2 37.282 287 143 8 51 305 7 288 4.29e-45 155
Msa0341500 AT4G27250.1 33.333 318 161 9 18 288 12 325 5.40e-45 157
Msa0341500 AT2G45400.2 34.892 278 146 7 19 261 40 317 1.19e-43 152
Msa0341500 AT4G27250.2 33.548 310 161 9 18 288 12 315 1.46e-43 153
Msa0341500 AT2G23910.1 32.107 299 157 9 20 284 11 297 1.84e-38 138
Msa0341500 AT2G23910.2 32.246 276 142 8 20 262 11 274 1.44e-37 135
Msa0341500 AT2G23910.3 32.482 274 140 8 20 260 11 272 1.92e-37 135
Msa0341500 AT1G61720.1 28.000 325 193 9 20 306 14 335 1.24e-36 134
Msa0341500 AT1G68540.2 34.123 211 117 3 119 308 5 214 9.44e-36 129
Msa0341500 AT2G45400.3 32.154 311 172 10 33 308 1 307 4.11e-34 127
Msa0341500 AT4G30470.1 30.795 302 166 8 15 284 6 296 9.06e-33 123
Msa0341500 AT2G23910.4 32.308 260 131 8 58 284 16 263 1.40e-30 117
Msa0341500 AT2G45400.4 33.796 216 109 6 19 200 40 255 1.97e-27 108
Msa0341500 AT5G14700.1 29.747 316 172 12 12 284 48 356 1.51e-25 105
Msa0341500 AT5G14700.2 30.396 227 118 8 12 203 48 269 1.01e-16 79.3
Msa0341500 AT4G33360.2 25.726 241 142 7 19 235 15 242 9.93e-15 73.9
Msa0341500 AT4G33360.3 25.726 241 142 7 19 235 3 230 1.08e-14 73.9
Msa0341500 AT4G33360.1 25.726 241 142 7 19 235 15 242 1.36e-14 73.9

Find 128 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTAACCTTTAGCAATATC+TGG 0.145493 2_4:+63169720 Msa0341500:three_prime_UTR
CGAGGAGATGTCACCGAATT+TGG 0.198738 2_4:+63170069 Msa0341500:three_prime_UTR
GCCATTGGTAATGGTAAATT+TGG 0.205614 2_4:-63169800 None:intergenic
AGAAATGAAATGACCGTAAT+TGG 0.215325 2_4:+63169514 Msa0341500:three_prime_UTR
AGTTAAAAGTGTTTAAAATA+TGG 0.223733 2_4:+63169677 Msa0341500:three_prime_UTR
CGTGACAGTGGAATAATAAT+TGG 0.228806 2_4:-63165600 None:intergenic
CTGGTGGCTTCATCGCTTCT+TGG 0.243372 2_4:+63165787 Msa0341500:CDS
GCAGAATCTTCCTCAGTTTC+CGG 0.271315 2_4:+63165741 Msa0341500:CDS
CTCAACATCAACACTCCTAT+TGG 0.285572 2_4:-63167464 None:intergenic
TTAATAAAGGTGGTTGGTTT+AGG 0.285630 2_4:-63169417 None:intergenic
TGAATTAAACTTGTTAATAA+AGG 0.288850 2_4:-63169430 None:intergenic
TATGAGAAACCTTCTGCTTC+TGG 0.292884 2_4:+63168281 Msa0341500:CDS
GTGACTTACTTGGTAGGAAT+TGG 0.293032 2_4:-63168380 None:intergenic
TAAGGATGACAGTAATATAA+TGG 0.299649 2_4:-63169595 None:intergenic
ATCAATTGGCGCAGTCTATA+TGG 0.300091 2_4:+63167438 Msa0341500:CDS
CACAAGCTTATGTTCATGTT+AGG 0.302408 2_4:+63168231 Msa0341500:CDS
TCTAGAGAATCTTCTTTGTT+TGG 0.306818 2_4:-63169386 None:intergenic
TTGGATACTACTATCCATTA+TGG 0.318150 2_4:-63170094 None:intergenic
CACCGAATTTGGTTCCATAA+TGG 0.318286 2_4:+63170080 Msa0341500:three_prime_UTR
TCCATTAACGGCTTCTTTAA+CGG 0.328595 2_4:-63166298 None:intergenic
TCCGTTAAAGAAGCCGTTAA+TGG 0.331782 2_4:+63166297 Msa0341500:CDS
TTAGAATACAATATTGTAGA+TGG 0.334882 2_4:+63165514 Msa0341500:five_prime_UTR
TCAACATCAACACTCCTATT+GGG 0.340370 2_4:-63167463 None:intergenic
TACTCAAGAAAATATTAATA+AGG 0.343266 2_4:-63169613 None:intergenic
TTTAAAATATGGGGATTGTT+TGG 0.345504 2_4:+63169688 Msa0341500:three_prime_UTR
TTCTTTGCTCCATTCACTGC+TGG 0.349124 2_4:-63167364 None:intergenic
ATTGTGCTTGCATTGATTGT+AGG 0.355496 2_4:-63168158 None:intergenic
TTATTAACAAGTTTAATTCA+TGG 0.356844 2_4:+63169433 Msa0341500:three_prime_UTR
AGTTGTAGTGAATCCAGTTT+TGG 0.358005 2_4:+63168115 Msa0341500:CDS
GTTAAAAGTGTTTAAAATAT+GGG 0.364039 2_4:+63169678 Msa0341500:three_prime_UTR
CTTGAACTTAGAGACAAATA+TGG 0.366142 2_4:-63169653 None:intergenic
TTTCTTACACTATCCAATTA+CGG 0.375261 2_4:-63169527 None:intergenic
AAAGGTGACCTTGGTCTTGT+AGG 0.380163 2_4:-63169358 None:intergenic
TTGAGGTTGATGAGTCTTGC+TGG 0.381677 2_4:+63167482 Msa0341500:CDS
ATTTGGTAATAATAAATAAT+AGG 0.385633 2_4:-63169783 None:intergenic
ATCCATTATGGAACCAAATT+CGG 0.390210 2_4:-63170082 None:intergenic
TGAGTCTTGCTGGAGTGATT+TGG 0.392451 2_4:+63167492 Msa0341500:CDS
GAGAAAGGCTATACTGTTAG+AGG 0.399644 2_4:+63165828 Msa0341500:CDS
TTAGCTACCTGCGAGGCTTT+AGG 0.405012 2_4:+63169473 Msa0341500:three_prime_UTR
TTGGTCTTGTAGGCTCTTAA+CGG 0.408849 2_4:-63169348 None:intergenic
CACATACTAAAGTACCTAAC+TGG 0.418602 2_4:+63168182 Msa0341500:CDS
TTTGGACACACAGGAGGAAA+TGG 0.419258 2_4:+63167336 Msa0341500:intron
AAGGATGACAGTAATATAAT+GGG 0.423103 2_4:-63169594 None:intergenic
TGCCGACAACAAGGTTGGCT+TGG 0.427158 2_4:+63169855 Msa0341500:three_prime_UTR
TTAACAAACTCTCGTTTACT+AGG 0.427280 2_4:+63170132 Msa0341500:three_prime_UTR
TTGGATGGTTAAGCTCCTCT+TGG 0.431425 2_4:+63165806 Msa0341500:CDS
GCCGACAACAAGGTTGGCTT+GGG 0.433092 2_4:+63169856 Msa0341500:three_prime_UTR
CTTCTTTGTTTGGAATAGAA+AGG 0.435435 2_4:-63169376 None:intergenic
CAGTCTATATGGACCCCAAT+AGG 0.445142 2_4:+63167449 Msa0341500:CDS
AATGGTCCAAGAACCAAAAC+TGG 0.452263 2_4:-63168128 None:intergenic
GCGGCGGCGGTGGTAGCAGC+AGG 0.455436 2_4:-63165720 None:intergenic
GGAAGATTCTGCGGCGGCGG+TGG 0.456282 2_4:-63165730 None:intergenic
TACAATATTGTAGATGGGTT+AGG 0.457913 2_4:+63165520 Msa0341500:five_prime_UTR
GTGACAGTGGAATAATAATT+GGG 0.458810 2_4:-63165599 None:intergenic
TGACTTACTTGGTAGGAATT+GGG 0.464359 2_4:-63168379 None:intergenic
AAAACTGAAGGATTTGGGAT+TGG 0.468538 2_4:+63169292 Msa0341500:CDS
ATTAAACTTGTTAATAAAGG+TGG 0.473298 2_4:-63169427 None:intergenic
ACAAGCTTATGTTCATGTTA+GGG 0.475300 2_4:+63168232 Msa0341500:CDS
AGGTCTTAGCTGAACCAGTT+AGG 0.475944 2_4:-63168196 None:intergenic
GACACCATGACATCCATTAA+CGG 0.478255 2_4:-63166310 None:intergenic
TCTAACCTTTAGCAATATCT+GGG 0.484776 2_4:+63169721 Msa0341500:three_prime_UTR
AATGAGTGGGATAGAGAAGA+AGG 0.485430 2_4:-63165648 None:intergenic
GATGAACTTGTTGCGGCCAT+TGG 0.485987 2_4:-63169815 None:intergenic
CTTGTTGCGGCCATTGGTAA+TGG 0.487358 2_4:-63169809 None:intergenic
TGGCTTCATCGCTTCTTGGA+TGG 0.487600 2_4:+63165791 Msa0341500:CDS
GCCCAAGCCAACCTTGTTGT+CGG 0.493998 2_4:-63169857 None:intergenic
AAATGGGCACTTGAAAGAGT+TGG 0.499323 2_4:+63166221 Msa0341500:CDS
ATGGTGGAGCCAGCAGTGAA+TGG 0.499409 2_4:+63167355 Msa0341500:CDS
CTGACGGGGTTATCTGTAAC+GGG 0.499421 2_4:-63166348 None:intergenic
TTGGTAGGAATTGGGTACTC+AGG 0.501534 2_4:-63168371 None:intergenic
ACCAAATTTACCATTACCAA+TGG 0.502475 2_4:+63169799 Msa0341500:three_prime_UTR
AGCAAAGGAAAGGCTAACTT+TGG 0.507447 2_4:+63166248 Msa0341500:CDS
TAGAATACAATATTGTAGAT+GGG 0.508276 2_4:+63165515 Msa0341500:five_prime_UTR
TCGGACTTTATCATGCAATT+CGG 0.508588 2_4:+63169968 Msa0341500:three_prime_UTR
TGAGGAAGATTCTGCGGCGG+CGG 0.513243 2_4:-63165733 None:intergenic
TACTAGGAGGCAAGCAAATG+AGG 0.517124 2_4:+63170148 Msa0341500:three_prime_UTR
AACTTGTTAATAAAGGTGGT+TGG 0.518932 2_4:-63169423 None:intergenic
GGCGAAACAATATGTGTCAC+TGG 0.520609 2_4:+63165762 Msa0341500:CDS
GACTTTATCATGCAATTCGG+TGG 0.523799 2_4:+63169971 Msa0341500:three_prime_UTR
CTTTAACGGAGTTAAGATCA+AGG 0.524956 2_4:-63166284 None:intergenic
TCATATAAACATTCACTCAC+TGG 0.528141 2_4:-63169323 None:intergenic
GTTAAGCTCCTCTTGGAGAA+AGG 0.529443 2_4:+63165813 Msa0341500:CDS
TTAAAAGTGTTTAAAATATG+GGG 0.530959 2_4:+63169679 Msa0341500:three_prime_UTR
AGGTGGTGATAAATTAAAGT+TGG 0.531358 2_4:-63165628 None:intergenic
TTATGTTCATGTTAGGGATG+TGG 0.538028 2_4:+63168238 Msa0341500:CDS
GTTGATGTTGGAGAGGTGCT+CGG 0.540685 2_4:+63169949 Msa0341500:three_prime_UTR
TCAAGTGCCGACAACAAGGT+TGG 0.547294 2_4:+63169850 Msa0341500:three_prime_UTR
ACAATCCCAGATATTGCTAA+AGG 0.553231 2_4:-63169726 None:intergenic
AGTGACACATATTGTTTCGC+CGG 0.561993 2_4:-63165760 None:intergenic
TTAAGAGTGACTTACTTGGT+AGG 0.563350 2_4:-63168386 None:intergenic
TGGTAGGAATTGGGTACTCA+GGG 0.564638 2_4:-63168370 None:intergenic
GCTAGAGCCTAAAGCCTCGC+AGG 0.569596 2_4:-63169480 None:intergenic
GAAAGAGTTGGAAGGAGCAA+AGG 0.573174 2_4:+63166233 Msa0341500:CDS
AGCTTGTGTTGCATTTGCAT+AGG 0.575371 2_4:-63168216 None:intergenic
TTGGAATAGAAAGGTGACCT+TGG 0.582400 2_4:-63169367 None:intergenic
GAAGCCGTTAATGGATGTCA+TGG 0.583328 2_4:+63166306 Msa0341500:CDS
ACTGACGGGGTTATCTGTAA+CGG 0.589424 2_4:-63166349 None:intergenic
GAGTGGGATAGAGAAGAAGG+TGG 0.594227 2_4:-63165645 None:intergenic
CAACATCAACACTCCTATTG+GGG 0.595944 2_4:-63167462 None:intergenic
ACAATATGTGTCACTGGCGC+TGG 0.596172 2_4:+63165768 Msa0341500:CDS
AGGCATCGATGAACTTGTTG+CGG 0.599246 2_4:-63169822 None:intergenic
ATAGTAGTATCCAATTCTGT+AGG 0.599500 2_4:+63170103 Msa0341500:three_prime_UTR
CAATAGGAGTGTTGATGTTG+AGG 0.599834 2_4:+63167465 Msa0341500:CDS
GATTACTTCAGCAAAGGACG+AGG 0.600213 2_4:+63170051 Msa0341500:three_prime_UTR
ACAAACTCTCGTTTACTAGG+AGG 0.604963 2_4:+63170135 Msa0341500:three_prime_UTR
TATTGTTTCGCCGGAAACTG+AGG 0.608139 2_4:-63165751 None:intergenic
ATATGTGTCACTGGCGCTGG+TGG 0.610816 2_4:+63165771 Msa0341500:CDS
AGTTGGAAGGAGCAAAGGAA+AGG 0.610898 2_4:+63166238 Msa0341500:CDS
AGAGGAACCTTGCGAAACCC+AGG 0.613164 2_4:+63165846 Msa0341500:CDS
CAGTATAGCCTTTCTCCAAG+AGG 0.617628 2_4:-63165821 None:intergenic
GGACACACAGGAGGAAATGG+TGG 0.629666 2_4:+63167339 Msa0341500:intron
GTAGCTGATTACTTCAGCAA+AGG 0.633455 2_4:+63170045 Msa0341500:three_prime_UTR
TTGATTGTAGGTTGTAGCAA+TGG 0.640557 2_4:-63168146 None:intergenic
GAATTTCAACAAGCTCTCCA+CGG 0.644131 2_4:-63168334 None:intergenic
AGTTGAATGAATGAATGAGT+GGG 0.658721 2_4:-63165661 None:intergenic
GAAAGTGAAATTGCAATGTG+AGG 0.660697 2_4:-63165568 None:intergenic
GGGCACTTGAAAGAGTTGGA+AGG 0.662593 2_4:+63166225 Msa0341500:CDS
AAGTATCTACCAGAAGCAGA+AGG 0.665232 2_4:-63168290 None:intergenic
AACTGAGGAAGATTCTGCGG+CGG 0.669024 2_4:-63165736 None:intergenic
GAGTTGAATGAATGAATGAG+TGG 0.674978 2_4:-63165662 None:intergenic
GGAAACTGAGGAAGATTCTG+CGG 0.675784 2_4:-63165739 None:intergenic
TGTGGCAAAAGAGAAAGGGG+TGG 0.680248 2_4:+63168088 Msa0341500:intron
AAGTTGGTGTGACGTGACAG+TGG 0.683204 2_4:-63165612 None:intergenic
AGAAGCAAAAGTGAGGCGCG+TGG 0.708286 2_4:+63167405 Msa0341500:CDS
CTGCAGCAGAAGCAAAAGTG+AGG 0.720003 2_4:+63167398 Msa0341500:CDS
GTTAAGAGCCTACAAGACCA+AGG 0.728061 2_4:+63169350 Msa0341500:CDS
CCAACATCAACAAAACACAA+CGG 0.751433 2_4:-63169937 None:intergenic
GCTGAAAGTTCACTTCACCG+TGG 0.785254 2_4:+63168317 Msa0341500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATAATT+TGG + chr2_4:63168783-63168802 Msa0341500:intron 0.0%
!! TATTTATGTGAATTAAATTA+AGG - chr2_4:63165895-63165914 None:intergenic 10.0%
!!! TATTGATTTTATTCTTTTTT+TGG + chr2_4:63168447-63168466 Msa0341500:intron 10.0%
!! ATAAATTTAATAATTCCTTT+AGG - chr2_4:63169006-63169025 None:intergenic 10.0%
!! ATTAAATTTATAAAATCAAG+TGG + chr2_4:63169015-63169034 Msa0341500:intron 10.0%
!!! ATATTTTTTTAATTCTAGAA+TGG + chr2_4:63169129-63169148 Msa0341500:intron 10.0%
!!! ATTTGGTAATAATAAATAAT+AGG - chr2_4:63169786-63169805 None:intergenic 10.0%
!! TAATTCAATGTAATTATATG+CGG - chr2_4:63166046-63166065 None:intergenic 15.0%
!!! TAAATTTTACTATCTATGTA+TGG + chr2_4:63166085-63166104 Msa0341500:intron 15.0%
!!! AAATTTTACTATCTATGTAT+GGG + chr2_4:63166086-63166105 Msa0341500:intron 15.0%
!! GAATGAAAAAAATTCAATTA+AGG - chr2_4:63166410-63166429 None:intergenic 15.0%
!!! TATTATTTTTCTTTTTGGAT+TGG - chr2_4:63166463-63166482 None:intergenic 15.0%
!!! AAGACTATTATTTTTCTTTT+TGG - chr2_4:63166468-63166487 None:intergenic 15.0%
!! ATATAATATCTTAGATATGA+TGG - chr2_4:63166637-63166656 None:intergenic 15.0%
!!! AATTTACCATATTATTTTAG+AGG - chr2_4:63166695-63166714 None:intergenic 15.0%
!!! TTTGATTTGAATTCTTAATT+TGG + chr2_4:63167318-63167337 Msa0341500:intron 15.0%
!! AAATTTGAATATTGTAGAAT+TGG + chr2_4:63168024-63168043 Msa0341500:intron 15.0%
!! TCAAAAACATTTCATTTAAA+TGG - chr2_4:63168523-63168542 None:intergenic 15.0%
!!! TGAATTAAACTTGTTAATAA+AGG - chr2_4:63169433-63169452 None:intergenic 15.0%
!! TTATTAACAAGTTTAATTCA+TGG + chr2_4:63169433-63169452 Msa0341500:three_prime_UTR 15.0%
!! TACTCAAGAAAATATTAATA+AGG - chr2_4:63169616-63169635 None:intergenic 15.0%
!!! AGTTAAAAGTGTTTAAAATA+TGG + chr2_4:63169677-63169696 Msa0341500:three_prime_UTR 15.0%
!!! GTTAAAAGTGTTTAAAATAT+GGG + chr2_4:63169678-63169697 Msa0341500:three_prime_UTR 15.0%
!!! TTAAAAGTGTTTAAAATATG+GGG + chr2_4:63169679-63169698 Msa0341500:three_prime_UTR 15.0%
!! TTAGAATACAATATTGTAGA+TGG + chr2_4:63165514-63165533 Msa0341500:five_prime_UTR 20.0%
!! TAGAATACAATATTGTAGAT+GGG + chr2_4:63165515-63165534 Msa0341500:five_prime_UTR 20.0%
!! AAATTAATTAAAAACTGACG+GGG - chr2_4:63166365-63166384 None:intergenic 20.0%
!! GAAATTAATTAAAAACTGAC+GGG - chr2_4:63166366-63166385 None:intergenic 20.0%
!! GGAAATTAATTAAAAACTGA+CGG - chr2_4:63166367-63166386 None:intergenic 20.0%
!!! ATTTTTTAAAGGGAAAATGA+CGG - chr2_4:63166549-63166568 None:intergenic 20.0%
!!! TTAGATATGATGGAATTAAA+AGG - chr2_4:63166627-63166646 None:intergenic 20.0%
!!! GTAAATTTTCTCAAAAGAAA+TGG + chr2_4:63166708-63166727 Msa0341500:intron 20.0%
!!! TCTTTTTAGGATAATAAATG+TGG + chr2_4:63166977-63166996 Msa0341500:intron 20.0%
!! AAATTAAATAAATGAAGGGA+GGG - chr2_4:63167552-63167571 None:intergenic 20.0%
!! AAAATTAAATAAATGAAGGG+AGG - chr2_4:63167553-63167572 None:intergenic 20.0%
!! AAATATGAATCAATCATGAT+TGG - chr2_4:63167672-63167691 None:intergenic 20.0%
!!! GACTCGTTTTTTAAAATTTA+AGG - chr2_4:63167713-63167732 None:intergenic 20.0%
!!! TTCAAATCGCTTTTATTTTA+GGG - chr2_4:63168006-63168025 None:intergenic 20.0%
!!! TTTCAAATCGCTTTTATTTT+AGG - chr2_4:63168007-63168026 None:intergenic 20.0%
!!! TTTTTTTGGCATATATATCA+TGG + chr2_4:63168461-63168480 Msa0341500:intron 20.0%
!! ACATTTCATTTAAATGGAAA+TGG - chr2_4:63168517-63168536 None:intergenic 20.0%
!!! GTTTTAGTATTTTGCAATTT+TGG + chr2_4:63168570-63168589 Msa0341500:intron 20.0%
!!! CAAGGATTTTGATAATATTT+TGG + chr2_4:63168678-63168697 Msa0341500:intron 20.0%
!! AATTTAATAATTCCTTTAGG+TGG - chr2_4:63169003-63169022 None:intergenic 20.0%
!!! TTTTTATTTGAGAAGATATG+TGG - chr2_4:63169275-63169294 None:intergenic 20.0%
!! AAATAAAAAACTGAAGGATT+TGG + chr2_4:63169286-63169305 Msa0341500:CDS 20.0%
!! AATAAAAAACTGAAGGATTT+GGG + chr2_4:63169287-63169306 Msa0341500:CDS 20.0%
!!! ATTAAACTTGTTAATAAAGG+TGG - chr2_4:63169430-63169449 None:intergenic 20.0%
!!! GTAGAATATTTTTTGTACCT+GGG - chr2_4:63165866-63165885 None:intergenic 25.0%
!!! AGTAGAATATTTTTTGTACC+TGG - chr2_4:63165867-63165886 None:intergenic 25.0%
!! ATAACGTTGTTGATAAGATT+AGG + chr2_4:63166120-63166139 Msa0341500:intron 25.0%
!!! CTGTTATTATATTTTGACGT+GGG + chr2_4:63166150-63166169 Msa0341500:intron 25.0%
!! TTTTCAGATGATCCAAAAAA+TGG + chr2_4:63166204-63166223 Msa0341500:intron 25.0%
! TTTCAGATGATCCAAAAAAT+GGG + chr2_4:63166205-63166224 Msa0341500:intron 25.0%
! GAAGAATAGAATAGAAATAG+AGG - chr2_4:63166388-63166407 None:intergenic 25.0%
!! TTTCAATCTTCTCTTTTCAA+AGG + chr2_4:63166435-63166454 Msa0341500:intron 25.0%
!!! ATATTATTTTAGAGGCTATG+TGG - chr2_4:63166687-63166706 None:intergenic 25.0%
!!! ACATAGCCTCTAAAATAATA+TGG + chr2_4:63166686-63166705 Msa0341500:intron 25.0%
! ATGTCATGTGATTATTTGAA+CGG + chr2_4:63166912-63166931 Msa0341500:intron 25.0%
! TAACACGAAAACTAGTAAAA+GGG - chr2_4:63167141-63167160 None:intergenic 25.0%
! TTAACACGAAAACTAGTAAA+AGG - chr2_4:63167142-63167161 None:intergenic 25.0%
! ACTTTCGCATAAAATCAAAT+TGG - chr2_4:63167291-63167310 None:intergenic 25.0%
!! TTTATTTGCTACTGATCAAT+AGG + chr2_4:63167570-63167589 Msa0341500:intron 25.0%
! AGTATTACAAGATTTGGATT+AGG + chr2_4:63167607-63167626 Msa0341500:intron 25.0%
!! AAAAAACGAGTCTAAAATCT+AGG + chr2_4:63167721-63167740 Msa0341500:intron 25.0%
!!! TTTTTTAAGAGTGACTTACT+TGG - chr2_4:63168393-63168412 None:intergenic 25.0%
! TTGCAAAATACTAAAACTTG+TGG - chr2_4:63168567-63168586 None:intergenic 25.0%
!! AAGAGTATGTTGAAAAGAAT+TGG + chr2_4:63168929-63168948 Msa0341500:intron 25.0%
! CCACATAAACAAATCAAATT+TGG - chr2_4:63168966-63168985 None:intergenic 25.0%
!!! CCAAATTTGATTTGTTTATG+TGG + chr2_4:63168963-63168982 Msa0341500:intron 25.0%
! TTTAGACAACATGTATGATT+AGG - chr2_4:63169156-63169175 None:intergenic 25.0%
!!! AATTTTGAGGCTATGATTAA+AGG - chr2_4:63169195-63169214 None:intergenic 25.0%
!! ACATGAACTAGTTAATTTTG+AGG - chr2_4:63169208-63169227 None:intergenic 25.0%
! CTTCTCAAATAAAAAACTGA+AGG + chr2_4:63169280-63169299 Msa0341500:CDS 25.0%
!! AGCTAAAAGATGATTCTTTT+TGG - chr2_4:63169459-63169478 None:intergenic 25.0%
! TTTCTTACACTATCCAATTA+CGG - chr2_4:63169530-63169549 None:intergenic 25.0%
! AAGGATGACAGTAATATAAT+GGG - chr2_4:63169597-63169616 None:intergenic 25.0%
! TAAGGATGACAGTAATATAA+TGG - chr2_4:63169598-63169617 None:intergenic 25.0%
!! TTTAAAATATGGGGATTGTT+TGG + chr2_4:63169688-63169707 Msa0341500:three_prime_UTR 25.0%
! TACAATATTGTAGATGGGTT+AGG + chr2_4:63165520-63165539 Msa0341500:five_prime_UTR 30.0%
GTGACAGTGGAATAATAATT+GGG - chr2_4:63165602-63165621 None:intergenic 30.0%
AGGTGGTGATAAATTAAAGT+TGG - chr2_4:63165631-63165650 None:intergenic 30.0%
AGTTGAATGAATGAATGAGT+GGG - chr2_4:63165664-63165683 None:intergenic 30.0%
CTTCTTCTTCTTCTTGTAAA+GGG - chr2_4:63165687-63165706 None:intergenic 30.0%
TCTTCTTCTTCTTCTTGTAA+AGG - chr2_4:63165688-63165707 None:intergenic 30.0%
AATGTAATTATATGCGGCAT+CGG - chr2_4:63166040-63166059 None:intergenic 30.0%
!!! GCTGTTATTATATTTTGACG+TGG + chr2_4:63166149-63166168 Msa0341500:intron 30.0%
CTTACTCTCTAATCTATCTT+AGG + chr2_4:63166485-63166504 Msa0341500:intron 30.0%
TAAAAAGAAGCAAGCAATCA+AGG - chr2_4:63166965-63166984 None:intergenic 30.0%
! TTGATTGCTTGCTTCTTTTT+AGG + chr2_4:63166964-63166983 Msa0341500:intron 30.0%
TCTTCCTAATAATATGCTCA+TGG + chr2_4:63167225-63167244 Msa0341500:intron 30.0%
CTTCCTAATAATATGCTCAT+GGG + chr2_4:63167226-63167245 Msa0341500:intron 30.0%
! AATTCTTAATTTGGACACAC+AGG + chr2_4:63167327-63167346 Msa0341500:intron 30.0%
!! CATAGGAGTATTACAAGATT+TGG + chr2_4:63167601-63167620 Msa0341500:intron 30.0%
ATCATGAATACCGAATATGT+TGG + chr2_4:63167911-63167930 Msa0341500:intron 30.0%
TCATGAATACCGAATATGTT+GGG + chr2_4:63167912-63167931 Msa0341500:intron 30.0%
!!! GCTTTTATTTTAGGGTTTAG+CGG - chr2_4:63167998-63168017 None:intergenic 30.0%
ACAAGCTTATGTTCATGTTA+GGG + chr2_4:63168232-63168251 Msa0341500:CDS 30.0%
ACGAAATACGTAGTATACTT+TGG - chr2_4:63168487-63168506 None:intergenic 30.0%
AGTATGTTGAAAAGAATTGG+TGG + chr2_4:63168932-63168951 Msa0341500:intron 30.0%
ATAATTCCTTTAGGTGGAAA+TGG - chr2_4:63168997-63169016 None:intergenic 30.0%
TCATATAAACATTCACTCAC+TGG - chr2_4:63169326-63169345 None:intergenic 30.0%
! CTTCTTTGTTTGGAATAGAA+AGG - chr2_4:63169379-63169398 None:intergenic 30.0%
TCTAGAGAATCTTCTTTGTT+TGG - chr2_4:63169389-63169408 None:intergenic 30.0%
!! TTAATAAAGGTGGTTGGTTT+AGG - chr2_4:63169420-63169439 None:intergenic 30.0%
!! AACTTGTTAATAAAGGTGGT+TGG - chr2_4:63169426-63169445 None:intergenic 30.0%
AGAAATGAAATGACCGTAAT+TGG + chr2_4:63169514-63169533 Msa0341500:three_prime_UTR 30.0%
CTTGAACTTAGAGACAAATA+TGG - chr2_4:63169656-63169675 None:intergenic 30.0%
TCTAACCTTTAGCAATATCT+GGG + chr2_4:63169721-63169740 Msa0341500:three_prime_UTR 30.0%
ACCAAATTTACCATTACCAA+TGG + chr2_4:63169799-63169818 Msa0341500:three_prime_UTR 30.0%
ATCCATTATGGAACCAAATT+CGG - chr2_4:63170085-63170104 None:intergenic 30.0%
TTGGATACTACTATCCATTA+TGG - chr2_4:63170097-63170116 None:intergenic 30.0%
ATAGTAGTATCCAATTCTGT+AGG + chr2_4:63170103-63170122 Msa0341500:three_prime_UTR 30.0%
TTAAAAACGACCTACAGAAT+TGG - chr2_4:63170116-63170135 None:intergenic 30.0%
TTAACAAACTCTCGTTTACT+AGG + chr2_4:63170132-63170151 Msa0341500:three_prime_UTR 30.0%
GAAAGTGAAATTGCAATGTG+AGG - chr2_4:63165571-63165590 None:intergenic 35.0%
CGTGACAGTGGAATAATAAT+TGG - chr2_4:63165603-63165622 None:intergenic 35.0%
GAGTTGAATGAATGAATGAG+TGG - chr2_4:63165665-63165684 None:intergenic 35.0%
CAAGAAGAAGAAGAAGAAGA+AGG + chr2_4:63165691-63165710 Msa0341500:five_prime_UTR 35.0%
!!! TCTTTCAAGTGCCCATTTTT+TGG - chr2_4:63166219-63166238 None:intergenic 35.0%
CTTTAACGGAGTTAAGATCA+AGG - chr2_4:63166287-63166306 None:intergenic 35.0%
TCCATTAACGGCTTCTTTAA+CGG - chr2_4:63166301-63166320 None:intergenic 35.0%
CATGTGATTATTTGAACGGA+TGG + chr2_4:63166916-63166935 Msa0341500:intron 35.0%
AATGTCTCTAGTAAGAAGGT+TGG - chr2_4:63167022-63167041 None:intergenic 35.0%
TGACAATGTCTCTAGTAAGA+AGG - chr2_4:63167026-63167045 None:intergenic 35.0%
AGTCCCATGAGCATATTATT+AGG - chr2_4:63167232-63167251 None:intergenic 35.0%
! GTGGTTTTCACATCATCAAT+TGG + chr2_4:63167424-63167443 Msa0341500:CDS 35.0%
TCAACATCAACACTCCTATT+GGG - chr2_4:63167466-63167485 None:intergenic 35.0%
TAAATAAATGAAGGGAGGGA+GGG - chr2_4:63167548-63167567 None:intergenic 35.0%
TTAAATAAATGAAGGGAGGG+AGG - chr2_4:63167549-63167568 None:intergenic 35.0%
ATCAATAGGACATAGGACAT+AGG + chr2_4:63167584-63167603 Msa0341500:intron 35.0%
TCTAGGTGTCTGATATTGAT+TGG + chr2_4:63167738-63167757 Msa0341500:intron 35.0%
GATCCAGATCCATTATAGTT+GGG + chr2_4:63167812-63167831 Msa0341500:intron 35.0%
ATCCAGATCCATTATAGTTG+GGG + chr2_4:63167813-63167832 Msa0341500:intron 35.0%
TTTAGTTGCCCCAACTATAA+TGG - chr2_4:63167824-63167843 None:intergenic 35.0%
CATGAATACCGAATATGTTG+GGG + chr2_4:63167913-63167932 Msa0341500:intron 35.0%
CACACAAGTGCAAATATGTA+GGG - chr2_4:63167968-63167987 None:intergenic 35.0%
TCACACAAGTGCAAATATGT+AGG - chr2_4:63167969-63167988 None:intergenic 35.0%
TTGTAGAATTGGTACTGCTA+TGG + chr2_4:63168035-63168054 Msa0341500:intron 35.0%
TGTAGAATTGGTACTGCTAT+GGG + chr2_4:63168036-63168055 Msa0341500:intron 35.0%
! AGTTGTAGTGAATCCAGTTT+TGG + chr2_4:63168115-63168134 Msa0341500:CDS 35.0%
TTGATTGTAGGTTGTAGCAA+TGG - chr2_4:63168149-63168168 None:intergenic 35.0%
!! ATTGTGCTTGCATTGATTGT+AGG - chr2_4:63168161-63168180 None:intergenic 35.0%
! CACATACTAAAGTACCTAAC+TGG + chr2_4:63168182-63168201 Msa0341500:CDS 35.0%
CACAAGCTTATGTTCATGTT+AGG + chr2_4:63168231-63168250 Msa0341500:CDS 35.0%
TTATGTTCATGTTAGGGATG+TGG + chr2_4:63168238-63168257 Msa0341500:CDS 35.0%
TGACTTACTTGGTAGGAATT+GGG - chr2_4:63168382-63168401 None:intergenic 35.0%
TTAAGAGTGACTTACTTGGT+AGG - chr2_4:63168389-63168408 None:intergenic 35.0%
TTTGGTATCATTACTCACGA+AGG + chr2_4:63168588-63168607 Msa0341500:intron 35.0%
! AATTGGTAACTCACATCACA+TGG - chr2_4:63168647-63168666 None:intergenic 35.0%
TGTGATGTGAGTTACCAATT+AGG + chr2_4:63168647-63168666 Msa0341500:intron 35.0%
ACCAATTAGGTAAAGAGTCA+AGG + chr2_4:63168660-63168679 Msa0341500:intron 35.0%
TCCTTGACTCTTTACCTAAT+TGG - chr2_4:63168664-63168683 None:intergenic 35.0%
TGTTGAAAAGAATTGGTGGA+TGG + chr2_4:63168936-63168955 Msa0341500:intron 35.0%
!! AAGTTGGTGATAAGGACATT+GGG - chr2_4:63169062-63169081 None:intergenic 35.0%
ACCAACTTCTTCCATGAATA+TGG + chr2_4:63169074-63169093 Msa0341500:intron 35.0%
CCAACTTCTTCCATGAATAT+GGG + chr2_4:63169075-63169094 Msa0341500:intron 35.0%
ATTTAGCATGCCCATATTCA+TGG - chr2_4:63169088-63169107 None:intergenic 35.0%
! AGTTCATGTTTTACACATGC+AGG + chr2_4:63169219-63169238 Msa0341500:intron 35.0%
!! AAGATATGTGGTTTTACTCG+AGG - chr2_4:63169263-63169282 None:intergenic 35.0%
! AAAACTGAAGGATTTGGGAT+TGG + chr2_4:63169292-63169311 Msa0341500:CDS 35.0%
GTCTAACCTTTAGCAATATC+TGG + chr2_4:63169720-63169739 Msa0341500:three_prime_UTR 35.0%
ACAATCCCAGATATTGCTAA+AGG - chr2_4:63169729-63169748 None:intergenic 35.0%
!! GCCATTGGTAATGGTAAATT+TGG - chr2_4:63169803-63169822 None:intergenic 35.0%
!! TGAACCACATGATTTTTGAG+CGG - chr2_4:63169915-63169934 None:intergenic 35.0%
CCAACATCAACAAAACACAA+CGG - chr2_4:63169940-63169959 None:intergenic 35.0%
TCGGACTTTATCATGCAATT+CGG + chr2_4:63169968-63169987 Msa0341500:three_prime_UTR 35.0%
AATGAGTGGGATAGAGAAGA+AGG - chr2_4:63165651-63165670 None:intergenic 40.0%
AGTGACACATATTGTTTCGC+CGG - chr2_4:63165763-63165782 None:intergenic 40.0%
GAGAAAGGCTATACTGTTAG+AGG + chr2_4:63165828-63165847 Msa0341500:CDS 40.0%
AAATGGGCACTTGAAAGAGT+TGG + chr2_4:63166221-63166240 Msa0341500:CDS 40.0%
AGCAAAGGAAAGGCTAACTT+TGG + chr2_4:63166248-63166267 Msa0341500:CDS 40.0%
TCCGTTAAAGAAGCCGTTAA+TGG + chr2_4:63166297-63166316 Msa0341500:CDS 40.0%
GACACCATGACATCCATTAA+CGG - chr2_4:63166313-63166332 None:intergenic 40.0%
ACACTTTGTCTTCGTCTAAG+TGG + chr2_4:63166658-63166677 Msa0341500:intron 40.0%
TGATTATTTGAACGGATGGC+AGG + chr2_4:63166920-63166939 Msa0341500:intron 40.0%
AGAAGCAAGCAATCAAGGTT+TGG - chr2_4:63166960-63166979 None:intergenic 40.0%
! TCTTAATTTGGACACACAGG+AGG + chr2_4:63167330-63167349 Msa0341500:intron 40.0%
ATCAATTGGCGCAGTCTATA+TGG + chr2_4:63167438-63167457 Msa0341500:CDS 40.0%
CAACATCAACACTCCTATTG+GGG - chr2_4:63167465-63167484 None:intergenic 40.0%
CTCAACATCAACACTCCTAT+TGG - chr2_4:63167467-63167486 None:intergenic 40.0%
!! CAATAGGAGTGTTGATGTTG+AGG + chr2_4:63167465-63167484 Msa0341500:CDS 40.0%
! GGAATTTTGCAAGAACACCA+AGG + chr2_4:63167513-63167532 Msa0341500:CDS 40.0%
AAATAAATGAAGGGAGGGAG+GGG - chr2_4:63167547-63167566 None:intergenic 40.0%
GCTACTGATCAATAGGACAT+AGG + chr2_4:63167577-63167596 Msa0341500:intron 40.0%
CGATCCAGATCCATTATAGT+TGG + chr2_4:63167811-63167830 Msa0341500:intron 40.0%
CAGATACACCCCAACATATT+CGG - chr2_4:63167924-63167943 None:intergenic 40.0%
!!! GTGAATCCAGTTTTGGTTCT+TGG + chr2_4:63168122-63168141 Msa0341500:CDS 40.0%
AATGGTCCAAGAACCAAAAC+TGG - chr2_4:63168131-63168150 None:intergenic 40.0%
AGCTTGTGTTGCATTTGCAT+AGG - chr2_4:63168219-63168238 None:intergenic 40.0%
TATGAGAAACCTTCTGCTTC+TGG + chr2_4:63168281-63168300 Msa0341500:CDS 40.0%
AAGTATCTACCAGAAGCAGA+AGG - chr2_4:63168293-63168312 None:intergenic 40.0%
GAATTTCAACAAGCTCTCCA+CGG - chr2_4:63168337-63168356 None:intergenic 40.0%
GTGACTTACTTGGTAGGAAT+TGG - chr2_4:63168383-63168402 None:intergenic 40.0%
TCATTACTCACGAAGGTTAC+TGG + chr2_4:63168595-63168614 Msa0341500:intron 40.0%
AGTGATATGTTGTCACTCCT+AGG + chr2_4:63168832-63168851 Msa0341500:intron 40.0%
TACGTTCCATTTCCACCTAA+AGG + chr2_4:63168988-63169007 Msa0341500:intron 40.0%
!! AGTTGGTGATAAGGACATTG+GGG - chr2_4:63169061-63169080 None:intergenic 40.0%
!! GAAGTTGGTGATAAGGACAT+TGG - chr2_4:63169063-63169082 None:intergenic 40.0%
!! CATGGAAGAAGTTGGTGATA+AGG - chr2_4:63169070-63169089 None:intergenic 40.0%
CCCATATTCATGGAAGAAGT+TGG - chr2_4:63169078-63169097 None:intergenic 40.0%
!! TTGGTCTTGTAGGCTCTTAA+CGG - chr2_4:63169351-63169370 None:intergenic 40.0%
TTGGAATAGAAAGGTGACCT+TGG - chr2_4:63169370-63169389 None:intergenic 40.0%
!!! TTTTTCAAGTGCCGACAACA+AGG + chr2_4:63169846-63169865 Msa0341500:three_prime_UTR 40.0%
!! ACATGATTTTTGAGCGGACA+TGG - chr2_4:63169909-63169928 None:intergenic 40.0%
ATGTCCGCTCAAAAATCATG+TGG + chr2_4:63169908-63169927 Msa0341500:three_prime_UTR 40.0%
!! CCGTTGTGTTTTGTTGATGT+TGG + chr2_4:63169937-63169956 Msa0341500:three_prime_UTR 40.0%
!! GTGTTTTGTTGATGTTGGAG+AGG + chr2_4:63169942-63169961 Msa0341500:three_prime_UTR 40.0%
GACTTTATCATGCAATTCGG+TGG + chr2_4:63169971-63169990 Msa0341500:three_prime_UTR 40.0%
GTAGCTGATTACTTCAGCAA+AGG + chr2_4:63170045-63170064 Msa0341500:three_prime_UTR 40.0%
! CACCGAATTTGGTTCCATAA+TGG + chr2_4:63170080-63170099 Msa0341500:three_prime_UTR 40.0%
ACAAACTCTCGTTTACTAGG+AGG + chr2_4:63170135-63170154 Msa0341500:three_prime_UTR 40.0%
GGAAACTGAGGAAGATTCTG+CGG - chr2_4:63165742-63165761 None:intergenic 45.0%
GCAGAATCTTCCTCAGTTTC+CGG + chr2_4:63165741-63165760 Msa0341500:CDS 45.0%
TATTGTTTCGCCGGAAACTG+AGG - chr2_4:63165754-63165773 None:intergenic 45.0%
GGCGAAACAATATGTGTCAC+TGG + chr2_4:63165762-63165781 Msa0341500:CDS 45.0%
TTGGATGGTTAAGCTCCTCT+TGG + chr2_4:63165806-63165825 Msa0341500:CDS 45.0%
GTTAAGCTCCTCTTGGAGAA+AGG + chr2_4:63165813-63165832 Msa0341500:CDS 45.0%
CAGTATAGCCTTTCTCCAAG+AGG - chr2_4:63165824-63165843 None:intergenic 45.0%
! TTTTGTACCTGGGTTTCGCA+AGG - chr2_4:63165856-63165875 None:intergenic 45.0%
GAAAGAGTTGGAAGGAGCAA+AGG + chr2_4:63166233-63166252 Msa0341500:CDS 45.0%
AGTTGGAAGGAGCAAAGGAA+AGG + chr2_4:63166238-63166257 Msa0341500:CDS 45.0%
! GAAGCCGTTAATGGATGTCA+TGG + chr2_4:63166306-63166325 Msa0341500:CDS 45.0%
ACTGACGGGGTTATCTGTAA+CGG - chr2_4:63166352-63166371 None:intergenic 45.0%
!! CAAGGTTTGGTGGTGAGAAT+AGG - chr2_4:63166947-63166966 None:intergenic 45.0%
AGCAAGCAATCAAGGTTTGG+TGG - chr2_4:63166957-63166976 None:intergenic 45.0%
TTTGGACACACAGGAGGAAA+TGG + chr2_4:63167336-63167355 Msa0341500:intron 45.0%
TTCTTTGCTCCATTCACTGC+TGG - chr2_4:63167367-63167386 None:intergenic 45.0%
CAGTCTATATGGACCCCAAT+AGG + chr2_4:63167449-63167468 Msa0341500:CDS 45.0%
!! TTGAGGTTGATGAGTCTTGC+TGG + chr2_4:63167482-63167501 Msa0341500:CDS 45.0%
TGAGTCTTGCTGGAGTGATT+TGG + chr2_4:63167492-63167511 Msa0341500:CDS 45.0%
CATGCAGTCACACGTATCTT+AGG - chr2_4:63167767-63167786 None:intergenic 45.0%
!! TGCCCCAACTATAATGGATC+TGG - chr2_4:63167818-63167837 None:intergenic 45.0%
TGGGATGTGGCAAAAGAGAA+AGG + chr2_4:63168083-63168102 Msa0341500:intron 45.0%
GGGATGTGGCAAAAGAGAAA+GGG + chr2_4:63168084-63168103 Msa0341500:intron 45.0%
GGATGTGGCAAAAGAGAAAG+GGG + chr2_4:63168085-63168104 Msa0341500:intron 45.0%
AGGTCTTAGCTGAACCAGTT+AGG - chr2_4:63168199-63168218 None:intergenic 45.0%
TGGTAGGAATTGGGTACTCA+GGG - chr2_4:63168373-63168392 None:intergenic 45.0%
TTGGTAGGAATTGGGTACTC+AGG - chr2_4:63168374-63168393 None:intergenic 45.0%
GTTGTCACTCCTAGGAACAT+TGG + chr2_4:63168840-63168859 Msa0341500:intron 45.0%
AACCAACCACCAATGTTCCT+AGG - chr2_4:63168852-63168871 None:intergenic 45.0%
! TAGGAACATTGGTGGTTGGT+TGG + chr2_4:63168851-63168870 Msa0341500:intron 45.0%
!! TAAGGACATTGGGGTTGGTA+AGG - chr2_4:63169052-63169071 None:intergenic 45.0%
GTTAAGAGCCTACAAGACCA+AGG + chr2_4:63169350-63169369 Msa0341500:CDS 45.0%
!! AAAGGTGACCTTGGTCTTGT+AGG - chr2_4:63169361-63169380 None:intergenic 45.0%
!! TCATCTTTTAGCTACCTGCG+AGG + chr2_4:63169466-63169485 Msa0341500:three_prime_UTR 45.0%
!! AGGCATCGATGAACTTGTTG+CGG - chr2_4:63169825-63169844 None:intergenic 45.0%
GTTGTCGGCACTTGAAAAAG+AGG - chr2_4:63169845-63169864 None:intergenic 45.0%
GATTACTTCAGCAAAGGACG+AGG + chr2_4:63170051-63170070 Msa0341500:three_prime_UTR 45.0%
TACTAGGAGGCAAGCAAATG+AGG + chr2_4:63170148-63170167 Msa0341500:three_prime_UTR 45.0%
!!! TAACTTTTTTATTTTTTAAA+GGG - chr2_4:63166559-63166578 None:intergenic 5.0%
!!! TTAACTTTTTTATTTTTTAA+AGG - chr2_4:63166560-63166579 None:intergenic 5.0%
!!! TTTTTATTTATTTTTATTTG+TGG + chr2_4:63166819-63166838 Msa0341500:intron 5.0%
!! AATAAAATTAAATAAATGAA+GGG - chr2_4:63167556-63167575 None:intergenic 5.0%
!! AAATAAAATTAAATAAATGA+AGG - chr2_4:63167557-63167576 None:intergenic 5.0%
!!! AAAAAAATATAAAGTTTTAT+TGG - chr2_4:63169119-63169138 None:intergenic 5.0%
!! AAGTTGGTGTGACGTGACAG+TGG - chr2_4:63165615-63165634 None:intergenic 50.0%
GAGTGGGATAGAGAAGAAGG+TGG - chr2_4:63165648-63165667 None:intergenic 50.0%
AACTGAGGAAGATTCTGCGG+CGG - chr2_4:63165739-63165758 None:intergenic 50.0%
! ACAATATGTGTCACTGGCGC+TGG + chr2_4:63165768-63165787 Msa0341500:CDS 50.0%
TGGCTTCATCGCTTCTTGGA+TGG + chr2_4:63165791-63165810 Msa0341500:CDS 50.0%
GGGCACTTGAAAGAGTTGGA+AGG + chr2_4:63166225-63166244 Msa0341500:CDS 50.0%
CTGACGGGGTTATCTGTAAC+GGG - chr2_4:63166351-63166370 None:intergenic 50.0%
CTGCAGCAGAAGCAAAAGTG+AGG + chr2_4:63167398-63167417 Msa0341500:CDS 50.0%
AGGGAGGGGAATATTGACCT+TGG - chr2_4:63167533-63167552 None:intergenic 50.0%
GTACTGCTATGGGAAAGCAG+TGG + chr2_4:63168046-63168065 Msa0341500:intron 50.0%
AGTGGCTGAACAAGCAGCAT+GGG + chr2_4:63168064-63168083 Msa0341500:intron 50.0%
TGAACAAGCAGCATGGGATG+TGG + chr2_4:63168070-63168089 Msa0341500:intron 50.0%
TGTGGCAAAAGAGAAAGGGG+TGG + chr2_4:63168088-63168107 Msa0341500:intron 50.0%
GCTGAAAGTTCACTTCACCG+TGG + chr2_4:63168317-63168336 Msa0341500:CDS 50.0%
GTCACTCCTAGGAACATTGG+TGG + chr2_4:63168843-63168862 Msa0341500:intron 50.0%
! CTCCTAGGAACATTGGTGGT+TGG + chr2_4:63168847-63168866 Msa0341500:intron 50.0%
GGTGATAAGGACATTGGGGT+TGG - chr2_4:63169057-63169076 None:intergenic 50.0%
TTAGCTACCTGCGAGGCTTT+AGG + chr2_4:63169473-63169492 Msa0341500:three_prime_UTR 50.0%
CTTGTTGCGGCCATTGGTAA+TGG - chr2_4:63169812-63169831 None:intergenic 50.0%
!! GATGAACTTGTTGCGGCCAT+TGG - chr2_4:63169818-63169837 None:intergenic 50.0%
!! TCAAGTGCCGACAACAAGGT+TGG + chr2_4:63169850-63169869 Msa0341500:three_prime_UTR 50.0%
!! GTTGATGTTGGAGAGGTGCT+CGG + chr2_4:63169949-63169968 Msa0341500:three_prime_UTR 50.0%
CGAGGAGATGTCACCGAATT+TGG + chr2_4:63170069-63170088 Msa0341500:three_prime_UTR 50.0%
! ATATGTGTCACTGGCGCTGG+TGG + chr2_4:63165771-63165790 Msa0341500:CDS 55.0%
CTGGTGGCTTCATCGCTTCT+TGG + chr2_4:63165787-63165806 Msa0341500:CDS 55.0%
AGAGGAACCTTGCGAAACCC+AGG + chr2_4:63165846-63165865 Msa0341500:CDS 55.0%
GGACACACAGGAGGAAATGG+TGG + chr2_4:63167339-63167358 Msa0341500:intron 55.0%
! ATGGTGGAGCCAGCAGTGAA+TGG + chr2_4:63167355-63167374 Msa0341500:CDS 55.0%
AGAAGCAAAAGTGAGGCGCG+TGG + chr2_4:63167405-63167424 Msa0341500:CDS 55.0%
CAGTGGCTGAACAAGCAGCA+TGG + chr2_4:63168063-63168082 Msa0341500:intron 55.0%
! TGCCGACAACAAGGTTGGCT+TGG + chr2_4:63169855-63169874 Msa0341500:three_prime_UTR 55.0%
!! GCCGACAACAAGGTTGGCTT+GGG + chr2_4:63169856-63169875 Msa0341500:three_prime_UTR 55.0%
! GCCCAAGCCAACCTTGTTGT+CGG - chr2_4:63169860-63169879 None:intergenic 55.0%
TGAGGAAGATTCTGCGGCGG+CGG - chr2_4:63165736-63165755 None:intergenic 60.0%
!! GCGGCATCGGTGTCACGTAT+CGG - chr2_4:63166027-63166046 None:intergenic 60.0%
GCTAGAGCCTAAAGCCTCGC+AGG - chr2_4:63169483-63169502 None:intergenic 60.0%
GGAAGATTCTGCGGCGGCGG+TGG - chr2_4:63165733-63165752 None:intergenic 70.0%
! GCGGCGGCGGTGGTAGCAGC+AGG - chr2_4:63165723-63165742 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 63165496 63170185 63165496 ID=Msa0341500;Name=Msa0341500
chr2_4 mRNA 63165496 63170185 63165496 ID=Msa0341500-mRNA-1;Parent=Msa0341500;Name=Msa0341500-mRNA-1;_AED=0.04;_eAED=0.04;_QI=221|0.75|0.8|1|0.75|0.8|5|764|321
chr2_4 exon 63165496 63165867 63165496 ID=Msa0341500-mRNA-1:exon:20126;Parent=Msa0341500-mRNA-1
chr2_4 exon 63166211 63166365 63166211 ID=Msa0341500-mRNA-1:exon:20127;Parent=Msa0341500-mRNA-1
chr2_4 exon 63167349 63167534 63167349 ID=Msa0341500-mRNA-1:exon:20128;Parent=Msa0341500-mRNA-1
chr2_4 exon 63168101 63168393 63168101 ID=Msa0341500-mRNA-1:exon:20129;Parent=Msa0341500-mRNA-1
chr2_4 exon 63169241 63170185 63169241 ID=Msa0341500-mRNA-1:exon:20130;Parent=Msa0341500-mRNA-1
chr2_4 five_prime_UTR 63165496 63165716 63165496 ID=Msa0341500-mRNA-1:five_prime_utr;Parent=Msa0341500-mRNA-1
chr2_4 CDS 63165717 63165867 63165717 ID=Msa0341500-mRNA-1:cds;Parent=Msa0341500-mRNA-1
chr2_4 CDS 63166211 63166365 63166211 ID=Msa0341500-mRNA-1:cds;Parent=Msa0341500-mRNA-1
chr2_4 CDS 63167349 63167534 63167349 ID=Msa0341500-mRNA-1:cds;Parent=Msa0341500-mRNA-1
chr2_4 CDS 63168101 63168393 63168101 ID=Msa0341500-mRNA-1:cds;Parent=Msa0341500-mRNA-1
chr2_4 CDS 63169241 63169421 63169241 ID=Msa0341500-mRNA-1:cds;Parent=Msa0341500-mRNA-1
chr2_4 three_prime_UTR 63169422 63170185 63169422 ID=Msa0341500-mRNA-1:three_prime_utr;Parent=Msa0341500-mRNA-1
Gene Sequence

>Msa0341500

ATGCCTGCTGCTACCACCGCCGCCGCAGAATCTTCCTCAGTTTCCGGCGAAACAATATGTGTCACTGGCGCTGGTGGCTTCATCGCTTCTTGGATGGTTAAGCTCCTCTTGGAGAAAGGCTATACTGTTAGAGGAACCTTGCGAAACCCAGATGATCCAAAAAATGGGCACTTGAAAGAGTTGGAAGGAGCAAAGGAAAGGCTAACTTTGGTCAAAGTTGATCTCCTTGATCTTAACTCCGTTAAAGAAGCCGTTAATGGATGTCATGGTGTCTTTCACACTGCTTCTCCCGTTACAGATAACCCCGAGGAAATGGTGGAGCCAGCAGTGAATGGAGCAAAGAATGTGATCATAGCTGCAGCAGAAGCAAAAGTGAGGCGCGTGGTTTTCACATCATCAATTGGCGCAGTCTATATGGACCCCAATAGGAGTGTTGATGTTGAGGTTGATGAGTCTTGCTGGAGTGATTTGGAATTTTGCAAGAACACCAAGAAAGGGGTGGATTTAGTTGTAGTGAATCCAGTTTTGGTTCTTGGACCATTGCTACAACCTACAATCAATGCAAGCACAATTCACATACTAAAGTACCTAACTGGTTCAGCTAAGACCTATGCAAATGCAACACAAGCTTATGTTCATGTTAGGGATGTGGCATTAGCTCACATACTTGTTTATGAGAAACCTTCTGCTTCTGGTAGATACTTATGTGCTGAAAGTTCACTTCACCGTGGAGAGCTTGTTGAAATTCTTGCTAAGTATTTCCCTGAGTACCCAATTCCTACCAAGTGTTCAGATGAAAAGAATCCTCGAGTAAAACCACATATCTTCTCAAATAAAAAACTGAAGGATTTGGGATTGGAGTTCACTCCAGTGAGTGAATGTTTATATGAAACCGTTAAGAGCCTACAAGACCAAGGTCACCTTTCTATTCCAAACAAAGAAGATTCTCTAGAAGTCAAATCCTAA
Protein sequence

>Msa0341500

MPAATTAAAESSSVSGETICVTGAGGFIASWMVKLLLEKGYTVRGTLRNPDDPKNGHLKELEGAKERLTLVKVDLLDLNSVKEAVNGCHGVFHTASPVTDNPEEMVEPAVNGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPNRSVDVEVDESCWSDLEFCKNTKKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKPSASGRYLCAESSLHRGELVEILAKYFPEYPIPTKCSDEKNPRVKPHIFSNKKLKDLGLEFTPVSECLYETVKSLQDQGHLSIPNKEDSLEVKS*