Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0342720 | RHN53045.1 | 91.667 | 60 | 5 | 0 | 171 | 230 | 15 | 74 | 1.43e-33 | 126 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0342720 | sp|Q7Y228|LAMP1_ARATH | 65.000 | 60 | 21 | 0 | 170 | 229 | 621 | 680 | 4.63e-19 | 89.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0342720 | A0A396HNX0 | 91.667 | 60 | 5 | 0 | 171 | 230 | 15 | 74 | 6.83e-34 | 126 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0342720 | Msa0479340 | 0.805120 | 1.555866e-49 | -8.615850e-47 |
Msa0342720 | Msa0676080 | 0.805545 | 1.267497e-49 | -8.615850e-47 |
Msa0342720 | Msa0885280 | 0.810362 | 1.197191e-50 | -8.615850e-47 |
Msa0342720 | Msa0885290 | 0.809981 | 1.445981e-50 | -8.615850e-47 |
Msa0342720 | Msa1116260 | 0.802232 | 6.186870e-49 | -8.615850e-47 |
Msa0342720 | Msa1136090 | 0.801539 | 8.584966e-49 | -8.615850e-47 |
Msa0342720 | Msa1249490 | 0.806947 | 6.421584e-50 | -8.615850e-47 |
Msa0342720 | Msa1273230 | 0.806848 | 6.740697e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0342720 | MtrunA17_Chr6g0487161 | 91.667 | 60 | 5 | 0 | 171 | 230 | 15 | 74 | 1.31e-37 | 126 |
Msa0342720 | MtrunA17_Chr6g0487151 | 90.164 | 61 | 6 | 0 | 170 | 230 | 35 | 95 | 6.72e-36 | 122 |
Msa0342720 | MtrunA17_Chr8g0386231 | 90.789 | 76 | 7 | 0 | 33 | 108 | 102 | 177 | 1.49e-25 | 101 |
Msa0342720 | MtrunA17_Chr3g0132051 | 57.895 | 76 | 28 | 2 | 33 | 108 | 85 | 156 | 3.90e-15 | 72.4 |
Msa0342720 | MtrunA17_Chr4g0001151 | 53.333 | 75 | 32 | 1 | 33 | 107 | 219 | 290 | 3.78e-14 | 70.5 |
Msa0342720 | MtrunA17_Chr3g0132061 | 53.947 | 76 | 32 | 1 | 33 | 108 | 85 | 157 | 4.76e-14 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0342720 | AT5G19740.1 | 65.000 | 60 | 21 | 0 | 170 | 229 | 621 | 680 | 4.70e-20 | 89.0 |
Msa0342720 | AT5G50740.4 | 44.737 | 76 | 39 | 1 | 33 | 108 | 85 | 157 | 5.13e-13 | 65.5 |
Msa0342720 | AT5G50740.2 | 44.737 | 76 | 39 | 1 | 33 | 108 | 78 | 150 | 9.44e-13 | 64.3 |
Msa0342720 | AT5G50740.3 | 44.737 | 76 | 39 | 1 | 33 | 108 | 85 | 157 | 4.02e-12 | 64.7 |
Msa0342720 | AT5G50740.5 | 44.737 | 76 | 39 | 1 | 33 | 108 | 78 | 150 | 6.02e-12 | 64.3 |
Msa0342720 | AT5G50740.1 | 44.737 | 76 | 39 | 1 | 33 | 108 | 78 | 150 | 6.02e-12 | 64.3 |
Find 41 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTGTTCTGAAGGTGGTTT+TGG | 0.150297 | 3_1:-658081 | None:intergenic |
ATTAGGGATTGATTTGAATT+TGG | 0.152214 | 3_1:+658660 | Msa0342720:CDS |
TTCTCAGGTCCCATCCTTTC+AGG | 0.164802 | 3_1:+658411 | Msa0342720:intron |
CATGCTTCGTTGGTTCTTTC+GGG | 0.177291 | 3_1:+663170 | Msa0342720:CDS |
ACATGCTTCGTTGGTTCTTT+CGG | 0.207679 | 3_1:+663169 | Msa0342720:CDS |
TTAGGGATTGATTTGAATTT+GGG | 0.279300 | 3_1:+658661 | Msa0342720:CDS |
CATAAATTGCAGGGAATGAT+TGG | 0.310697 | 3_1:-663058 | None:intergenic |
GTAATGAGTTGGAGGGATTA+GGG | 0.314046 | 3_1:+658644 | Msa0342720:CDS |
AGTAATGAGTTGGAGGGATT+AGG | 0.333560 | 3_1:+658643 | Msa0342720:CDS |
GGAAAGAAAGATGGTCTCTT+AGG | 0.359567 | 3_1:+653305 | Msa0342720:CDS |
CCATAGTTATTATGTTTAGA+TGG | 0.361627 | 3_1:-663032 | None:intergenic |
GTCAAGTACAACACAAAGTT+TGG | 0.367918 | 3_1:+663126 | Msa0342720:CDS |
CCATCTAAACATAATAACTA+TGG | 0.386589 | 3_1:+663032 | Msa0342720:CDS |
ACGTTGAAGAGGAGGAGAAT+TGG | 0.398612 | 3_1:+658619 | Msa0342720:CDS |
CGTTGAAGAGGAGGAGAATT+GGG | 0.402934 | 3_1:+658620 | Msa0342720:CDS |
GGTTTGGTGATGAAGTTTGC+TGG | 0.429867 | 3_1:+658528 | Msa0342720:intron |
TTTGCAGCATCATAAATTGC+AGG | 0.446194 | 3_1:-663068 | None:intergenic |
ATGATTGAGCGTGCATTCAC+TGG | 0.469403 | 3_1:+653283 | Msa0342720:CDS |
GGGAAAATTGATGATGGACT+TGG | 0.488341 | 3_1:+658681 | Msa0342720:CDS |
GAAAGAAAAGAAAGCTGAAG+AGG | 0.491414 | 3_1:+658140 | Msa0342720:CDS |
GAATTTGGGAAAATTGATGA+TGG | 0.493682 | 3_1:+658675 | Msa0342720:CDS |
GAGAATTGGGAGTAATGAGT+TGG | 0.495504 | 3_1:+658633 | Msa0342720:CDS |
ATTTACATACTGCAGAATCA+TGG | 0.504596 | 3_1:+663102 | Msa0342720:CDS |
TTGACAAATTCCTGAAAGGA+TGG | 0.507451 | 3_1:-658421 | None:intergenic |
ATTGGGAGTAATGAGTTGGA+GGG | 0.523709 | 3_1:+658637 | Msa0342720:CDS |
ATAAATTGCAGGGAATGATT+GGG | 0.525426 | 3_1:-663057 | None:intergenic |
AATTGGGAGTAATGAGTTGG+AGG | 0.540662 | 3_1:+658636 | Msa0342720:CDS |
AGTCATCAGACATGCTTCGT+TGG | 0.546182 | 3_1:+663160 | Msa0342720:CDS |
TTGCAGCATCATAAATTGCA+GGG | 0.549857 | 3_1:-663067 | None:intergenic |
AGAATCACTATCATAACCTT+AGG | 0.564388 | 3_1:-658248 | None:intergenic |
CATTCACTGGGAAAGAAAGA+TGG | 0.568787 | 3_1:+653296 | Msa0342720:CDS |
AAAGGACGACGTTGAAGAGG+AGG | 0.579877 | 3_1:+658611 | Msa0342720:CDS |
TAAGTTCTCTCACTTTCGAG+TGG | 0.583207 | 3_1:-653246 | None:intergenic |
GTGAAAGGACGACGTTGAAG+AGG | 0.587276 | 3_1:+658608 | Msa0342720:CDS |
AGACGCATTGAGAAAATCAA+AGG | 0.589980 | 3_1:+658314 | Msa0342720:CDS |
AGGACGACGTTGATTGTGAA+AGG | 0.596660 | 3_1:+658593 | Msa0342720:CDS |
ATGGTCTCTTAGGAATACCT+TGG | 0.607207 | 3_1:+653315 | Msa0342720:CDS |
ACAGTTGACAAATTCCTGAA+AGG | 0.607677 | 3_1:-658425 | None:intergenic |
TGACAAATTCCTGAAAGGAT+GGG | 0.614992 | 3_1:-658420 | None:intergenic |
TGATTGAGCGTGCATTCACT+GGG | 0.636808 | 3_1:+653284 | Msa0342720:CDS |
AGGTTCTTGAAAGAGTTCAG+AGG | 0.645167 | 3_1:+658022 | Msa0342720:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATAAAATCTATTTATTTGT+GGG | + | chr3_1:653451-653470 | Msa0342720:intron | 10.0% |
!! | AAGAAAAAAATTATAATATG+GGG | - | chr3_1:662151-662170 | None:intergenic | 10.0% |
!!! | TAAGCTATTTTTTATAAATA+AGG | - | chr3_1:653980-653999 | None:intergenic | 10.0% |
!! | AATCAAAAATAAAAAACATA+TGG | - | chr3_1:658829-658848 | None:intergenic | 10.0% |
!!! | TTGTTTTTTTAAAATGAAAT+CGG | + | chr3_1:660513-660532 | Msa0342720:intron | 10.0% |
!! | AAGAAAAAAATTATAATATG+GGG | + | chr3_1:662151-662170 | Msa0342720:intron | 10.0% |
!! | AGGAAAAAATAATATTAAAT+TGG | - | chr3_1:662994-663013 | None:intergenic | 10.0% |
!!! | CAAATAAATAGATTTTATAG+TGG | - | chr3_1:653450-653469 | None:intergenic | 15.0% |
!! | CTATAAAATCTATTTATTTG+TGG | + | chr3_1:653450-653469 | Msa0342720:intron | 15.0% |
!!! | AGTTGGTTTTTAAAATTAAT+CGG | - | chr3_1:653630-653649 | None:intergenic | 15.0% |
!!! | GTTGTTTTTTAAAATGAAAT+CGG | - | chr3_1:660283-660302 | None:intergenic | 15.0% |
!!! | GTTGTTTTTTAAAATGAAAT+CGG | - | chr3_1:660283-660302 | None:intergenic | 15.0% |
!!! | AGTTGGTTTTTAAAATTAAT+CGG | - | chr3_1:653630-653649 | None:intergenic | 15.0% |
!!! | ATAAGTTATTTTGAATAAGT+TGG | - | chr3_1:654314-654333 | None:intergenic | 15.0% |
!!! | AGTTGGTTTTTAAAATTAAT+CGG | - | chr3_1:653630-653649 | None:intergenic | 15.0% |
!!! | GTTGTTTTTTAAAATGAAAT+CGG | - | chr3_1:660283-660302 | None:intergenic | 15.0% |
!!! | AGTTGGTTTTTAAAATTAAT+CGG | - | chr3_1:653630-653649 | None:intergenic | 15.0% |
!!! | ATAAGTTATTTTGAATAAGT+TGG | - | chr3_1:654314-654333 | None:intergenic | 15.0% |
!!! | AGTTGGTTTTTAAAATTAAT+CGG | - | chr3_1:653630-653649 | None:intergenic | 15.0% |
!!! | GTTGTTTTTTAAAATGAAAT+CGG | - | chr3_1:660283-660302 | None:intergenic | 15.0% |
!!! | AGTTGGTTTTTAAAATTAAT+CGG | - | chr3_1:653630-653649 | None:intergenic | 15.0% |
!!! | ATAAGTTATTTTGAATAAGT+TGG | - | chr3_1:654314-654333 | None:intergenic | 15.0% |
!!! | AGTTGGTTTTTAAAATTAAT+CGG | - | chr3_1:653630-653649 | None:intergenic | 15.0% |
!!! | GTTGTTTTTTAAAATGAAAT+CGG | - | chr3_1:660283-660302 | None:intergenic | 15.0% |
!!! | GTTGTTTTTTAAAATGAAAT+CGG | - | chr3_1:660283-660302 | None:intergenic | 15.0% |
!!! | AGTTGTTTTTAAAATGAAAT+CGG | - | chr3_1:661418-661437 | None:intergenic | 15.0% |
!! | ATGAAATTATTATTGTTAGT+TGG | - | chr3_1:659754-659773 | None:intergenic | 15.0% |
!!! | GTTGTTTTTTAAAATGAAAT+CGG | + | chr3_1:660283-660302 | Msa0342720:intron | 15.0% |
!!! | GTTGTTTTTTAAAATGAAAT+CGG | + | chr3_1:660283-660302 | Msa0342720:intron | 15.0% |
!!! | GTTGTTTTTTAAAATGAAAT+CGG | + | chr3_1:660283-660302 | Msa0342720:intron | 15.0% |
!!! | GTTGTTTTTTAAAATGAAAT+CGG | + | chr3_1:660283-660302 | Msa0342720:intron | 15.0% |
!!! | AGTTGTTTTTAAAATGAAAT+CGG | + | chr3_1:661418-661437 | Msa0342720:intron | 15.0% |
!!! | GTTGTTTTTTAAAATGAAAT+CGG | + | chr3_1:660283-660302 | Msa0342720:intron | 15.0% |
!!! | GTTGTTTTTTAAAATGAAAT+CGG | + | chr3_1:660283-660302 | Msa0342720:intron | 15.0% |
!!! | ATGTTTTGTATAAAAAGTAA+AGG | - | chr3_1:662576-662595 | None:intergenic | 15.0% |
!! | ATATCATAATCAAAAATCAA+TGG | + | chr3_1:662670-662689 | Msa0342720:intron | 15.0% |
!!! | ATTTTATCAACAAATTACAA+AGG | + | chr3_1:662795-662814 | Msa0342720:intron | 15.0% |
!!! | AATAAGTTGTTTTGAATAAG+CGG | - | chr3_1:660132-660151 | None:intergenic | 20.0% |
!!! | ATAAGCTATTTTGAATAAGT+TGG | - | chr3_1:653647-653666 | None:intergenic | 20.0% |
!!! | AATAAGTTGTTTTGAATAAG+CGG | - | chr3_1:660132-660151 | None:intergenic | 20.0% |
!!! | AATAAGCTATTTTGAATAAG+CGG | - | chr3_1:653648-653667 | None:intergenic | 20.0% |
!! | TATTCAAAACAGCTTATTTA+TGG | + | chr3_1:653774-653793 | Msa0342720:intron | 20.0% |
!!! | ATAAGCTATTTTGAATAAGT+TGG | - | chr3_1:653647-653666 | None:intergenic | 20.0% |
!! | TATTCAAAACAGCTTATTTA+TGG | + | chr3_1:653774-653793 | Msa0342720:intron | 20.0% |
!!! | ATAAGCTATTTTGAATAAGT+TGG | - | chr3_1:653647-653666 | None:intergenic | 20.0% |
!! | TATTCAAAACAGCTTATTTA+TGG | + | chr3_1:653774-653793 | Msa0342720:intron | 20.0% |
!!! | ATAAGCTATTTTGAATAAGT+TGG | - | chr3_1:653647-653666 | None:intergenic | 20.0% |
!! | GATTTATAATTATGAAGATG+TGG | + | chr3_1:657942-657961 | Msa0342720:intron | 20.0% |
!!! | TTTATTTCATTCACTTGTTT+TGG | + | chr3_1:658383-658402 | Msa0342720:intron | 20.0% |
!! | AAACCATTAAACAATTAGTT+TGG | + | chr3_1:658979-658998 | Msa0342720:intron | 20.0% |
!! | AAACCAAACTAATTGTTTAA+TGG | - | chr3_1:658985-659004 | None:intergenic | 20.0% |
!!! | CTTATTGATTAATTCACATT+AGG | + | chr3_1:659251-659270 | Msa0342720:intron | 20.0% |
!!! | TTATTACAAAACCATTTTCA+CGG | + | chr3_1:659335-659354 | Msa0342720:intron | 20.0% |
!!! | AAACCATTAGACAATTATTT+TGG | + | chr3_1:659639-659658 | Msa0342720:intron | 20.0% |
!! | AAACCAAAATAATTGTCTAA+TGG | - | chr3_1:659645-659664 | None:intergenic | 20.0% |
!! | AAACCATTAAACCATAATTA+TGG | + | chr3_1:659682-659701 | Msa0342720:intron | 20.0% |
!! | AAACCATAATTATGGTTTAA+TGG | - | chr3_1:659688-659707 | None:intergenic | 20.0% |
!! | TATTACTGAAACCATAATTA+TGG | - | chr3_1:659696-659715 | None:intergenic | 20.0% |
!! | AAATCATTACACATTTATCT+TGG | + | chr3_1:659777-659796 | Msa0342720:intron | 20.0% |
!! | AAACCATTAAACCATAATTA+TGG | + | chr3_1:659682-659701 | Msa0342720:intron | 20.0% |
!! | AAACCATAATTATGGTTTAA+TGG | - | chr3_1:659688-659707 | None:intergenic | 20.0% |
!! | TATTACTGAAACCATAATTA+TGG | - | chr3_1:659696-659715 | None:intergenic | 20.0% |
!! | ACAAATTATGTATACAAAAC+AGG | - | chr3_1:659990-660009 | None:intergenic | 20.0% |
!!! | ATAAGCTGTTTTGTATAAAT+AGG | + | chr3_1:660065-660084 | Msa0342720:intron | 20.0% |
!!! | AATAAGTTGTTTTGAATAAG+CGG | + | chr3_1:660132-660151 | Msa0342720:intron | 20.0% |
!!! | AATAAGTTGTTTTGAATAAG+CGG | + | chr3_1:660132-660151 | Msa0342720:intron | 20.0% |
!! | AAAATGTTTAGACAAATGAA+GGG | + | chr3_1:662747-662766 | Msa0342720:intron | 20.0% |
!! | AAATAGAATGAATTGAGAAA+AGG | + | chr3_1:662829-662848 | Msa0342720:intron | 20.0% |
!! | CAAATAATTCTTTTCACTTG+GGG | - | chr3_1:653424-653443 | None:intergenic | 25.0% |
!! | CCAAATAATTCTTTTCACTT+GGG | - | chr3_1:653425-653444 | None:intergenic | 25.0% |
! | CCAAGTGAAAAGAATTATTT+GGG | + | chr3_1:653423-653442 | Msa0342720:intron | 25.0% |
!!! | TTATAATATGGGGCTTTATT+AGG | - | chr3_1:653477-653496 | None:intergenic | 25.0% |
! | CTTATTCGAAACAACTTATT+AGG | + | chr3_1:653680-653699 | Msa0342720:intron | 25.0% |
! | CTTATTCGAAACAACTTATT+AGG | + | chr3_1:653680-653699 | Msa0342720:intron | 25.0% |
! | CTTATTCGAAACAACTTATT+AGG | + | chr3_1:653680-653699 | Msa0342720:intron | 25.0% |
!!! | AATAAGCTGTTTTGAATAAG+CGG | - | chr3_1:660214-660233 | None:intergenic | 25.0% |
! | CTTATTCGAAACAACTTATT+AGG | + | chr3_1:653680-653699 | Msa0342720:intron | 25.0% |
!!! | AATAAGCTGTTTTGAATAAG+CGG | - | chr3_1:660214-660233 | None:intergenic | 25.0% |
! | CTTATTCGAAACAACTTATT+AGG | + | chr3_1:653680-653699 | Msa0342720:intron | 25.0% |
!!! | AATAAGCTGTTTTGAATAAG+CGG | - | chr3_1:660214-660233 | None:intergenic | 25.0% |
! | CTTATTCGAAACAACTTATT+AGG | + | chr3_1:653680-653699 | Msa0342720:intron | 25.0% |
!!! | AATAAGCTGTTTTGAATAAG+CGG | - | chr3_1:660214-660233 | None:intergenic | 25.0% |
! | CTTATTCGAAACAACTTATT+AGG | + | chr3_1:653680-653699 | Msa0342720:intron | 25.0% |
!!! | AATAAGCTGTTTTGAATAAG+CGG | - | chr3_1:660214-660233 | None:intergenic | 25.0% |
!! | GAGATTTCAATTTTGAATTG+CGG | + | chr3_1:657896-657915 | Msa0342720:intron | 25.0% |
! | TGTTGTTAAATGAGAAAAAG+CGG | + | chr3_1:657990-658009 | Msa0342720:intron | 25.0% |
!!! | ATTTTTTTCTCTTGTTCTGA+AGG | - | chr3_1:658093-658112 | None:intergenic | 25.0% |
! | AAATTTATCTGAATCTGTGA+TGG | + | chr3_1:658188-658207 | Msa0342720:intron | 25.0% |
! | GAATTCAAACACAAAATCAT+CGG | - | chr3_1:658456-658475 | None:intergenic | 25.0% |
!!! | CTTGCTATGATTTTCAATTT+TGG | + | chr3_1:658480-658499 | Msa0342720:intron | 25.0% |
!!! | TTTTGGTTACATATAGATGA+TGG | + | chr3_1:658497-658516 | Msa0342720:intron | 25.0% |
! | TTTGGTTACATATAGATGAT+GGG | + | chr3_1:658498-658517 | Msa0342720:intron | 25.0% |
!!! | TCTTGATTTTTGGAAGAAAA+AGG | + | chr3_1:658573-658592 | Msa0342720:CDS | 25.0% |
!!! | ATTAGGGATTGATTTGAATT+TGG | + | chr3_1:658660-658679 | Msa0342720:CDS | 25.0% |
!!! | TTAGGGATTGATTTGAATTT+GGG | + | chr3_1:658661-658680 | Msa0342720:CDS | 25.0% |
! | AGAAATTGTCGAAATCAAAT+TGG | + | chr3_1:658708-658727 | Msa0342720:intron | 25.0% |
! | GAAATTGTCGAAATCAAATT+GGG | + | chr3_1:658709-658728 | Msa0342720:intron | 25.0% |
!!! | GTTTTGAAAATGTTCTGTTA+TGG | + | chr3_1:658793-658812 | Msa0342720:intron | 25.0% |
! | AAACCATTAAGTACATCTAA+TGG | + | chr3_1:658876-658895 | Msa0342720:intron | 25.0% |
! | AAACCATTAGATGTACTTAA+TGG | - | chr3_1:658882-658901 | None:intergenic | 25.0% |
!! | TTAAGTACATCTAATGGTTT+TGG | + | chr3_1:658882-658901 | Msa0342720:intron | 25.0% |
!!! | TTGTTTAATGGTTTTGCTAT+GGG | - | chr3_1:658973-658992 | None:intergenic | 25.0% |
!!! | ATTGTTTAATGGTTTTGCTA+TGG | - | chr3_1:658974-658993 | None:intergenic | 25.0% |
! | TATAAGTGTGTACTATTAAG+TGG | + | chr3_1:659275-659294 | Msa0342720:intron | 25.0% |
!! | TATTACAAAACCATTTTCAC+GGG | + | chr3_1:659336-659355 | Msa0342720:intron | 25.0% |
!! | AAACCATTTTCACTACAAAA+TGG | + | chr3_1:659494-659513 | Msa0342720:intron | 25.0% |
!! | AAACCATTTTGTAGTGAAAA+TGG | - | chr3_1:659500-659519 | None:intergenic | 25.0% |
!! | TTTTCACTACAAAATGGTTT+TGG | + | chr3_1:659500-659519 | Msa0342720:intron | 25.0% |
!!! | ATAAGCTGTTTTGAATAAGT+TGG | + | chr3_1:660215-660234 | Msa0342720:intron | 25.0% |
! | CTTATTCGAAACAACTTATT+AGG | - | chr3_1:653680-653699 | None:intergenic | 25.0% |
!!! | GTTGCTTTTTAAAATGAGAT+CGG | + | chr3_1:662008-662027 | Msa0342720:intron | 25.0% |
! | AGCTTAATTCTAATAAGTAG+AGG | - | chr3_1:662239-662258 | None:intergenic | 25.0% |
! | TATGAAAAGCTTTCAAAAGT+AGG | - | chr3_1:662398-662417 | None:intergenic | 25.0% |
!! | ACAAAAATTGCAATTTTGTC+TGG | - | chr3_1:662509-662528 | None:intergenic | 25.0% |
! | TGATTCAAGAAACATACATT+CGG | - | chr3_1:662537-662556 | None:intergenic | 25.0% |
!!! | ATGGTTTGGTTCTTAAAAAA+TGG | - | chr3_1:662607-662626 | None:intergenic | 25.0% |
! | CTTGAAATTCATAAATGGTT+TGG | - | chr3_1:662621-662640 | None:intergenic | 25.0% |
! | TGGTATGTAAAATTTGTATG+AGG | + | chr3_1:662711-662730 | Msa0342720:intron | 25.0% |
! | GAAAATGTTTAGACAAATGA+AGG | + | chr3_1:662746-662765 | Msa0342720:intron | 25.0% |
! | TTGAGAAAAGGAACAAAAAT+TGG | + | chr3_1:662841-662860 | Msa0342720:intron | 25.0% |
!! | ACATTTTGTTGAAGTTATTG+AGG | + | chr3_1:662918-662937 | Msa0342720:intron | 25.0% |
! | CCATAGTTATTATGTTTAGA+TGG | - | chr3_1:663035-663054 | None:intergenic | 25.0% |
! | CCATCTAAACATAATAACTA+TGG | + | chr3_1:663032-663051 | Msa0342720:CDS | 25.0% |
! | AATTTATGATGCTGCAAAAA+TGG | + | chr3_1:663073-663092 | Msa0342720:CDS | 25.0% |
GTGTAGAAAGCAATTATGTT+GGG | - | chr3_1:662269-662288 | None:intergenic | 30.0% | |
CCCAAGTGAAAAGAATTATT+TGG | + | chr3_1:653422-653441 | Msa0342720:intron | 30.0% | |
! | CCCAAATAATTCTTTTCACT+TGG | - | chr3_1:653426-653445 | None:intergenic | 30.0% |
ACACATACCTTAGAAGAATA+GGG | - | chr3_1:657834-657853 | None:intergenic | 30.0% | |
AGAATCACTATCATAACCTT+AGG | - | chr3_1:658251-658270 | None:intergenic | 30.0% | |
!! | ATATAGATGATGGGTTTGAT+TGG | + | chr3_1:658507-658526 | Msa0342720:intron | 30.0% |
! | TCCTTTGCATTCTTGATTTT+TGG | + | chr3_1:658563-658582 | Msa0342720:CDS | 30.0% |
TCCAAAAATCAAGAATGCAA+AGG | - | chr3_1:658567-658586 | None:intergenic | 30.0% | |
GAATTTGGGAAAATTGATGA+TGG | + | chr3_1:658675-658694 | Msa0342720:CDS | 30.0% | |
TGTTGCTAAGAATTCAAAGT+TGG | + | chr3_1:658755-658774 | Msa0342720:intron | 30.0% | |
! | TTTTCAAAACCATCAGATTC+AGG | - | chr3_1:658783-658802 | None:intergenic | 30.0% |
AAACCATTAAACCACACTTA+TGG | + | chr3_1:659022-659041 | Msa0342720:intron | 30.0% | |
AAACCATAAGTGTGGTTTAA+TGG | - | chr3_1:659028-659047 | None:intergenic | 30.0% | |
TATTACTGAAACCATAAGTG+TGG | - | chr3_1:659036-659055 | None:intergenic | 30.0% | |
TAAATAGAATCGCGCTTTAA+TGG | - | chr3_1:659158-659177 | None:intergenic | 30.0% | |
!! | TGTGTTGTTTATGATCAATC+CGG | + | chr3_1:659442-659461 | Msa0342720:intron | 30.0% |
! | AAACCATTTTCACTGCAAAA+TGG | + | chr3_1:659537-659556 | Msa0342720:intron | 30.0% |
! | AAACCATTTTGCAGTGAAAA+TGG | - | chr3_1:659543-659562 | None:intergenic | 30.0% |
! | TTTTCACTGCAAAATGGTTT+TGG | + | chr3_1:659543-659562 | Msa0342720:intron | 30.0% |
!! | ATTGTCTAATGGTTTTGCTA+TGG | - | chr3_1:659634-659653 | None:intergenic | 30.0% |
TGGATTATGAGTTTCTTTAC+TGG | - | chr3_1:659887-659906 | None:intergenic | 30.0% | |
! | AATATGGGGCTTTAATTTAG+TGG | + | chr3_1:662165-662184 | Msa0342720:intron | 30.0% |
! | ATATGGGGCTTTAATTTAGT+GGG | + | chr3_1:662166-662185 | Msa0342720:intron | 30.0% |
!! | TTTAAGTGGGCTTTGAAATT+TGG | + | chr3_1:662200-662219 | Msa0342720:intron | 30.0% |
!! | TTAAGTGGGCTTTGAAATTT+GGG | + | chr3_1:662201-662220 | Msa0342720:intron | 30.0% |
TAGAATTAAGCTTTCACTTG+AGG | + | chr3_1:662247-662266 | Msa0342720:intron | 30.0% | |
ATGTAGAAAGCAATTATGCA+CGG | + | chr3_1:662291-662310 | Msa0342720:intron | 30.0% | |
TAACCAAATGCTTATACCAA+GGG | - | chr3_1:662352-662371 | None:intergenic | 30.0% | |
!!! | TGGTTAGTCTATTTTTCTTG+AGG | + | chr3_1:662366-662385 | Msa0342720:intron | 30.0% |
CTTGCTGAAGATAAAATTGA+AGG | + | chr3_1:662772-662791 | Msa0342720:intron | 30.0% | |
!! | TTTCCTGCTTTTCAGATATA+TGG | + | chr3_1:663008-663027 | Msa0342720:intron | 30.0% |
ATAAATTGCAGGGAATGATT+GGG | - | chr3_1:663060-663079 | None:intergenic | 30.0% | |
ATTTACATACTGCAGAATCA+TGG | + | chr3_1:663102-663121 | Msa0342720:CDS | 30.0% | |
GTGTAGAAAGCAATTATGCA+CGG | - | chr3_1:653380-653399 | None:intergenic | 35.0% | |
GGTGTAGAAAGCAATTATGT+TGG | - | chr3_1:662268-662287 | None:intergenic | 35.0% | |
AAACAGCTTATTCGATTCCT+AGG | + | chr3_1:657778-657797 | Msa0342720:intron | 35.0% | |
AGATCATCCCTATTCTTCTA+AGG | + | chr3_1:657824-657843 | Msa0342720:intron | 35.0% | |
CACACATACCTTAGAAGAAT+AGG | - | chr3_1:657835-657854 | None:intergenic | 35.0% | |
! | TACTGATTGCAAATCTCACA+AGG | + | chr3_1:657966-657985 | Msa0342720:intron | 35.0% |
ACTCTTTCAAGAACCTTCAA+TGG | - | chr3_1:658018-658037 | None:intergenic | 35.0% | |
!!! | TTTTTCTCTTGTTCTGAAGG+TGG | - | chr3_1:658090-658109 | None:intergenic | 35.0% |
!! | TTCTTTTCTTTCTCTGGCTT+AGG | - | chr3_1:658132-658151 | None:intergenic | 35.0% |
! | TCAGCTTTCTTTTCTTTCTC+TGG | - | chr3_1:658138-658157 | None:intergenic | 35.0% |
GAAAGAAAAGAAAGCTGAAG+AGG | + | chr3_1:658140-658159 | Msa0342720:CDS | 35.0% | |
TTATTATATGGTGCAGCCTA+AGG | + | chr3_1:658232-658251 | Msa0342720:intron | 35.0% | |
AGACGCATTGAGAAAATCAA+AGG | + | chr3_1:658314-658333 | Msa0342720:CDS | 35.0% | |
!!! | CTTGTTTTGGTTCAATTCTC+AGG | + | chr3_1:658396-658415 | Msa0342720:intron | 35.0% |
! | TGGTTTTCTTTGATCCAACA+TGG | - | chr3_1:658862-658881 | None:intergenic | 35.0% |
AAACCATTTCCACAGCAAAA+TGG | + | chr3_1:658919-658938 | Msa0342720:intron | 35.0% | |
!! | AAACCATTTTGCTGTGGAAA+TGG | - | chr3_1:658925-658944 | None:intergenic | 35.0% |
! | TTTCCACAGCAAAATGGTTT+TGG | + | chr3_1:658925-658944 | Msa0342720:intron | 35.0% |
!! | TAATGGTTTTGCTATGGGTA+TGG | - | chr3_1:658968-658987 | None:intergenic | 35.0% |
GACGAGACTTTACAAAAAAG+TGG | + | chr3_1:659225-659244 | Msa0342720:intron | 35.0% | |
! | AAAACCATTTTCACGGGAAT+TGG | + | chr3_1:659342-659361 | Msa0342720:intron | 35.0% |
! | AAACCATTTTCACGGGAATT+GGG | + | chr3_1:659343-659362 | Msa0342720:intron | 35.0% |
TGATTCGATGTGAAATCTGT+TGG | + | chr3_1:659369-659388 | Msa0342720:intron | 35.0% | |
TGAAATCTGTTGGTATAAGC+TGG | + | chr3_1:659379-659398 | Msa0342720:intron | 35.0% | |
TGTTGGTATAAGCTGGAATT+CGG | + | chr3_1:659386-659405 | Msa0342720:intron | 35.0% | |
TGTTTATGATCAATCCGGTT+CGG | + | chr3_1:659447-659466 | Msa0342720:intron | 35.0% | |
AAACCATTTCCACAGCAAAA+CGG | + | chr3_1:658919-658938 | Msa0342720:intron | 35.0% | |
!! | TAATGGTTTTGCTATGGCTA+TGG | - | chr3_1:659628-659647 | None:intergenic | 35.0% |
GTTAGAGAGAGAAATGAGTA+TGG | - | chr3_1:659907-659926 | None:intergenic | 35.0% | |
!!! | GGCTTGAAGCTTTTTTAAGT+GGG | + | chr3_1:662187-662206 | Msa0342720:intron | 35.0% |
GGTGTAGAAAGCAATTATGT+TGG | + | chr3_1:662268-662287 | Msa0342720:intron | 35.0% | |
AACCAAATGCTTATACCAAG+GGG | - | chr3_1:662351-662370 | None:intergenic | 35.0% | |
CTAACCAAATGCTTATACCA+AGG | - | chr3_1:662353-662372 | None:intergenic | 35.0% | |
! | CCTGAAAGTACACATTTAGT+CGG | - | chr3_1:662447-662466 | None:intergenic | 35.0% |
GGTGGCTTGAAATTCATAAA+TGG | - | chr3_1:662626-662645 | None:intergenic | 35.0% | |
CATAAATTGCAGGGAATGAT+TGG | - | chr3_1:663061-663080 | None:intergenic | 35.0% | |
TTGCAGCATCATAAATTGCA+GGG | - | chr3_1:663070-663089 | None:intergenic | 35.0% | |
TTTGCAGCATCATAAATTGC+AGG | - | chr3_1:663071-663090 | None:intergenic | 35.0% | |
GTCAAGTACAACACAAAGTT+TGG | + | chr3_1:663126-663145 | Msa0342720:CDS | 35.0% | |
TAAGTTCTCTCACTTTCGAG+TGG | - | chr3_1:653249-653268 | None:intergenic | 40.0% | |
CATTCACTGGGAAAGAAAGA+TGG | + | chr3_1:653296-653315 | Msa0342720:CDS | 40.0% | |
GGAAAGAAAGATGGTCTCTT+AGG | + | chr3_1:653305-653324 | Msa0342720:CDS | 40.0% | |
ATGGTCTCTTAGGAATACCT+TGG | + | chr3_1:653315-653334 | Msa0342720:CDS | 40.0% | |
CTCTTAGGAATACCTTGGTA+TGG | + | chr3_1:653320-653339 | Msa0342720:intron | 40.0% | |
! | CCATAACTTTTGCCATACCA+AGG | - | chr3_1:653335-653354 | None:intergenic | 40.0% |
CCTTGGTATGGCAAAAGTTA+TGG | + | chr3_1:653332-653351 | Msa0342720:intron | 40.0% | |
GGCAAAAGTTATGGTGCATA+AGG | + | chr3_1:653341-653360 | Msa0342720:intron | 40.0% | |
GATGATCTGCAATTCCGTTT+GGG | - | chr3_1:657812-657831 | None:intergenic | 40.0% | |
AGAAAAAGCGGATCCATTGA+AGG | + | chr3_1:658002-658021 | Msa0342720:intron | 40.0% | |
AGGTTCTTGAAAGAGTTCAG+AGG | + | chr3_1:658022-658041 | Msa0342720:intron | 40.0% | |
!!! | CTTGTTCTGAAGGTGGTTTT+GGG | - | chr3_1:658083-658102 | None:intergenic | 40.0% |
!!! | TCTTGTTCTGAAGGTGGTTT+TGG | - | chr3_1:658084-658103 | None:intergenic | 40.0% |
!! | GATGATGGGTTTGATTGGTT+TGG | + | chr3_1:658512-658531 | Msa0342720:intron | 40.0% |
GAGAATTGGGAGTAATGAGT+TGG | + | chr3_1:658633-658652 | Msa0342720:CDS | 40.0% | |
! | AATTGGGAGTAATGAGTTGG+AGG | + | chr3_1:658636-658655 | Msa0342720:CDS | 40.0% |
! | ATTGGGAGTAATGAGTTGGA+GGG | + | chr3_1:658637-658656 | Msa0342720:CDS | 40.0% |
! | AGTAATGAGTTGGAGGGATT+AGG | + | chr3_1:658643-658662 | Msa0342720:CDS | 40.0% |
! | GTAATGAGTTGGAGGGATTA+GGG | + | chr3_1:658644-658663 | Msa0342720:CDS | 40.0% |
!! | GGGAAAATTGATGATGGACT+TGG | + | chr3_1:658681-658700 | Msa0342720:CDS | 40.0% |
GATTGTGATATGCACCATGT+TGG | + | chr3_1:658845-658864 | Msa0342720:intron | 40.0% | |
! | ACTCCAAAACCATTTTGCTG+TGG | - | chr3_1:658931-658950 | None:intergenic | 40.0% |
TTTCCCAATTCCCGTGAAAA+TGG | - | chr3_1:659349-659368 | None:intergenic | 40.0% | |
!!! | TGGTTTTGGAGTCTAACTCA+CGG | + | chr3_1:659514-659533 | Msa0342720:intron | 40.0% |
!!! | TGGTTTTGGAGTACAACTCA+CGG | + | chr3_1:658896-658915 | Msa0342720:intron | 40.0% |
!! | AAACCGTTTTGCTGTGGAAA+TGG | - | chr3_1:659586-659605 | None:intergenic | 40.0% |
! | GTTTCAAAACCGTTTTGCTG+TGG | - | chr3_1:659592-659611 | None:intergenic | 40.0% |
!!! | GGGCTTGAAGCTTTTTTAAG+TGG | + | chr3_1:662186-662205 | Msa0342720:intron | 40.0% |
ACCAAATGCTTATACCAAGG+GGG | - | chr3_1:662350-662369 | None:intergenic | 40.0% | |
CCGACTAAATGTGTACTTTC+AGG | + | chr3_1:662444-662463 | Msa0342720:intron | 40.0% | |
AAACCAGACGAAAAATGAGG+TGG | - | chr3_1:662644-662663 | None:intergenic | 40.0% | |
GTCAAACCAGACGAAAAATG+AGG | - | chr3_1:662647-662666 | None:intergenic | 40.0% | |
AGTGACAGAAACCAAAAGAG+AGG | - | chr3_1:662875-662894 | None:intergenic | 40.0% | |
GGTCCATATATCTGAAAAGC+AGG | - | chr3_1:663014-663033 | None:intergenic | 40.0% | |
!! | ACATGCTTCGTTGGTTCTTT+CGG | + | chr3_1:663169-663188 | Msa0342720:CDS | 40.0% |
ATGATTGAGCGTGCATTCAC+TGG | + | chr3_1:653283-653302 | Msa0342720:CDS | 45.0% | |
TGATTGAGCGTGCATTCACT+GGG | + | chr3_1:653284-653303 | Msa0342720:CDS | 45.0% | |
GCAATTATGCACGGTGCATA+AGG | - | chr3_1:662300-662319 | None:intergenic | 45.0% | |
! | TCTGCAATTCCGTTTGGGAT+CGG | - | chr3_1:657807-657826 | None:intergenic | 45.0% |
GGATGATCTGCAATTCCGTT+TGG | - | chr3_1:657813-657832 | None:intergenic | 45.0% | |
!!! | TCTGAAGGTGGTTTTGGGAT+CGG | - | chr3_1:658078-658097 | None:intergenic | 45.0% |
!! | GGTTTGGTGATGAAGTTTGC+TGG | + | chr3_1:658528-658547 | Msa0342720:intron | 45.0% |
! | AGGACGACGTTGATTGTGAA+AGG | + | chr3_1:658593-658612 | Msa0342720:CDS | 45.0% |
ACGTTGAAGAGGAGGAGAAT+TGG | + | chr3_1:658619-658638 | Msa0342720:CDS | 45.0% | |
CGTTGAAGAGGAGGAGAATT+GGG | + | chr3_1:658620-658639 | Msa0342720:CDS | 45.0% | |
!! | AAGTTGGTGCCTGAATCTGA+TGG | + | chr3_1:658771-658790 | Msa0342720:intron | 45.0% |
!! | TGATCAATCCGGTTCGGATT+TGG | + | chr3_1:659453-659472 | Msa0342720:intron | 45.0% |
TGCTAACACCAAATCCGAAC+CGG | - | chr3_1:659464-659483 | None:intergenic | 45.0% | |
TGGCTATGGTTTCTGTGAGT+TGG | - | chr3_1:659614-659633 | None:intergenic | 45.0% | |
GCAATTATGCACGGTGCATA+AGG | + | chr3_1:662300-662319 | Msa0342720:intron | 45.0% | |
ACCCCCTTGGTATAAGCATT+TGG | + | chr3_1:662346-662365 | Msa0342720:intron | 45.0% | |
! | AGCTTTTCATAAGCGCGCAT+CGG | + | chr3_1:662407-662426 | Msa0342720:intron | 45.0% |
!! | AAGCCACCTCATTTTTCGTC+TGG | + | chr3_1:662638-662657 | Msa0342720:intron | 45.0% |
! | TGGCAATGTCTCCTCTCTTT+TGG | + | chr3_1:662861-662880 | Msa0342720:intron | 45.0% |
CTGCTGATCTGATGATCAAG+TGG | + | chr3_1:662893-662912 | Msa0342720:intron | 45.0% | |
AGTCATCAGACATGCTTCGT+TGG | + | chr3_1:663160-663179 | Msa0342720:CDS | 45.0% | |
!! | CATGCTTCGTTGGTTCTTTC+GGG | + | chr3_1:663170-663189 | Msa0342720:CDS | 45.0% |
!! | TAAGAAAAAAATTATAATAT+GGG | - | chr3_1:662150-662169 | None:intergenic | 5.0% |
!! | TTAAGAAAAAAATTATAATA+TGG | - | chr3_1:662149-662168 | None:intergenic | 5.0% |
!!! | ATCATTTTTATTTTATTATA+TGG | + | chr3_1:658220-658239 | Msa0342720:intron | 5.0% |
!! | TTAAGAAAAAAATTATAATA+TGG | + | chr3_1:662149-662168 | Msa0342720:intron | 5.0% |
!! | TAAGAAAAAAATTATAATAT+GGG | + | chr3_1:662150-662169 | Msa0342720:intron | 5.0% |
TTCTCAGGTCCCATCCTTTC+AGG | + | chr3_1:658411-658430 | Msa0342720:intron | 50.0% | |
GTGAAAGGACGACGTTGAAG+AGG | + | chr3_1:658608-658627 | Msa0342720:CDS | 50.0% | |
AAAGGACGACGTTGAAGAGG+AGG | + | chr3_1:658611-658630 | Msa0342720:CDS | 50.0% | |
GGGTGTGGTTATGGTGCATA+AGG | - | chr3_1:662330-662349 | None:intergenic | 50.0% | |
! | ATACCAAGGGGGTGTGGTTA+TGG | - | chr3_1:662339-662358 | None:intergenic | 50.0% |
ATGCTTATACCAAGGGGGTG+TGG | - | chr3_1:662345-662364 | None:intergenic | 50.0% | |
CCTAGGTCGCCGATCCCAAA+CGG | + | chr3_1:657795-657814 | Msa0342720:intron | 60.0% | |
GCACCATAACCACACCCCCT+TGG | + | chr3_1:662333-662352 | Msa0342720:intron | 60.0% | |
! | CCGTTTGGGATCGGCGACCT+AGG | - | chr3_1:657798-657817 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 653241 | 663205 | 653241 | ID=Msa0342720;Name=Msa0342720 |
chr3_1 | mRNA | 653241 | 663205 | 653241 | ID=Msa0342720-mRNA-1;Parent=Msa0342720;Name=Msa0342720-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|0.16|1|1|6|0|230 |
chr3_1 | exon | 653241 | 653336 | 653241 | ID=Msa0342720-mRNA-1:exon:80;Parent=Msa0342720-mRNA-1 |
chr3_1 | exon | 658024 | 658161 | 658024 | ID=Msa0342720-mRNA-1:exon:81;Parent=Msa0342720-mRNA-1 |
chr3_1 | exon | 658248 | 658335 | 658248 | ID=Msa0342720-mRNA-1:exon:82;Parent=Msa0342720-mRNA-1 |
chr3_1 | exon | 658418 | 658445 | 658418 | ID=Msa0342720-mRNA-1:exon:83;Parent=Msa0342720-mRNA-1 |
chr3_1 | exon | 658543 | 658702 | 658543 | ID=Msa0342720-mRNA-1:exon:84;Parent=Msa0342720-mRNA-1 |
chr3_1 | exon | 663023 | 663205 | 663023 | ID=Msa0342720-mRNA-1:exon:85;Parent=Msa0342720-mRNA-1 |
chr3_1 | CDS | 653241 | 653336 | 653241 | ID=Msa0342720-mRNA-1:cds;Parent=Msa0342720-mRNA-1 |
chr3_1 | CDS | 658024 | 658161 | 658024 | ID=Msa0342720-mRNA-1:cds;Parent=Msa0342720-mRNA-1 |
chr3_1 | CDS | 658248 | 658335 | 658248 | ID=Msa0342720-mRNA-1:cds;Parent=Msa0342720-mRNA-1 |
chr3_1 | CDS | 658418 | 658445 | 658418 | ID=Msa0342720-mRNA-1:cds;Parent=Msa0342720-mRNA-1 |
chr3_1 | CDS | 658543 | 658702 | 658543 | ID=Msa0342720-mRNA-1:cds;Parent=Msa0342720-mRNA-1 |
chr3_1 | CDS | 663023 | 663205 | 663023 | ID=Msa0342720-mRNA-1:cds;Parent=Msa0342720-mRNA-1 |
Gene Sequence |
Protein sequence |