AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0342720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0342720 MtrunA17_Chr6g0487161 91.667 60 5 0 171 230 15 74 1.31e-37 126
Msa0342720 MtrunA17_Chr6g0487151 90.164 61 6 0 170 230 35 95 6.72e-36 122
Msa0342720 MtrunA17_Chr8g0386231 90.789 76 7 0 33 108 102 177 1.49e-25 101
Msa0342720 MtrunA17_Chr3g0132051 57.895 76 28 2 33 108 85 156 3.90e-15 72.4
Msa0342720 MtrunA17_Chr4g0001151 53.333 75 32 1 33 107 219 290 3.78e-14 70.5
Msa0342720 MtrunA17_Chr3g0132061 53.947 76 32 1 33 108 85 157 4.76e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0342720 AT5G19740.1 65.000 60 21 0 170 229 621 680 4.70e-20 89.0
Msa0342720 AT5G50740.4 44.737 76 39 1 33 108 85 157 5.13e-13 65.5
Msa0342720 AT5G50740.2 44.737 76 39 1 33 108 78 150 9.44e-13 64.3
Msa0342720 AT5G50740.3 44.737 76 39 1 33 108 85 157 4.02e-12 64.7
Msa0342720 AT5G50740.5 44.737 76 39 1 33 108 78 150 6.02e-12 64.3
Msa0342720 AT5G50740.1 44.737 76 39 1 33 108 78 150 6.02e-12 64.3

Find 41 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTTCTGAAGGTGGTTT+TGG 0.150297 3_1:-658081 None:intergenic
ATTAGGGATTGATTTGAATT+TGG 0.152214 3_1:+658660 Msa0342720:CDS
TTCTCAGGTCCCATCCTTTC+AGG 0.164802 3_1:+658411 Msa0342720:intron
CATGCTTCGTTGGTTCTTTC+GGG 0.177291 3_1:+663170 Msa0342720:CDS
ACATGCTTCGTTGGTTCTTT+CGG 0.207679 3_1:+663169 Msa0342720:CDS
TTAGGGATTGATTTGAATTT+GGG 0.279300 3_1:+658661 Msa0342720:CDS
CATAAATTGCAGGGAATGAT+TGG 0.310697 3_1:-663058 None:intergenic
GTAATGAGTTGGAGGGATTA+GGG 0.314046 3_1:+658644 Msa0342720:CDS
AGTAATGAGTTGGAGGGATT+AGG 0.333560 3_1:+658643 Msa0342720:CDS
GGAAAGAAAGATGGTCTCTT+AGG 0.359567 3_1:+653305 Msa0342720:CDS
CCATAGTTATTATGTTTAGA+TGG 0.361627 3_1:-663032 None:intergenic
GTCAAGTACAACACAAAGTT+TGG 0.367918 3_1:+663126 Msa0342720:CDS
CCATCTAAACATAATAACTA+TGG 0.386589 3_1:+663032 Msa0342720:CDS
ACGTTGAAGAGGAGGAGAAT+TGG 0.398612 3_1:+658619 Msa0342720:CDS
CGTTGAAGAGGAGGAGAATT+GGG 0.402934 3_1:+658620 Msa0342720:CDS
GGTTTGGTGATGAAGTTTGC+TGG 0.429867 3_1:+658528 Msa0342720:intron
TTTGCAGCATCATAAATTGC+AGG 0.446194 3_1:-663068 None:intergenic
ATGATTGAGCGTGCATTCAC+TGG 0.469403 3_1:+653283 Msa0342720:CDS
GGGAAAATTGATGATGGACT+TGG 0.488341 3_1:+658681 Msa0342720:CDS
GAAAGAAAAGAAAGCTGAAG+AGG 0.491414 3_1:+658140 Msa0342720:CDS
GAATTTGGGAAAATTGATGA+TGG 0.493682 3_1:+658675 Msa0342720:CDS
GAGAATTGGGAGTAATGAGT+TGG 0.495504 3_1:+658633 Msa0342720:CDS
ATTTACATACTGCAGAATCA+TGG 0.504596 3_1:+663102 Msa0342720:CDS
TTGACAAATTCCTGAAAGGA+TGG 0.507451 3_1:-658421 None:intergenic
ATTGGGAGTAATGAGTTGGA+GGG 0.523709 3_1:+658637 Msa0342720:CDS
ATAAATTGCAGGGAATGATT+GGG 0.525426 3_1:-663057 None:intergenic
AATTGGGAGTAATGAGTTGG+AGG 0.540662 3_1:+658636 Msa0342720:CDS
AGTCATCAGACATGCTTCGT+TGG 0.546182 3_1:+663160 Msa0342720:CDS
TTGCAGCATCATAAATTGCA+GGG 0.549857 3_1:-663067 None:intergenic
AGAATCACTATCATAACCTT+AGG 0.564388 3_1:-658248 None:intergenic
CATTCACTGGGAAAGAAAGA+TGG 0.568787 3_1:+653296 Msa0342720:CDS
AAAGGACGACGTTGAAGAGG+AGG 0.579877 3_1:+658611 Msa0342720:CDS
TAAGTTCTCTCACTTTCGAG+TGG 0.583207 3_1:-653246 None:intergenic
GTGAAAGGACGACGTTGAAG+AGG 0.587276 3_1:+658608 Msa0342720:CDS
AGACGCATTGAGAAAATCAA+AGG 0.589980 3_1:+658314 Msa0342720:CDS
AGGACGACGTTGATTGTGAA+AGG 0.596660 3_1:+658593 Msa0342720:CDS
ATGGTCTCTTAGGAATACCT+TGG 0.607207 3_1:+653315 Msa0342720:CDS
ACAGTTGACAAATTCCTGAA+AGG 0.607677 3_1:-658425 None:intergenic
TGACAAATTCCTGAAAGGAT+GGG 0.614992 3_1:-658420 None:intergenic
TGATTGAGCGTGCATTCACT+GGG 0.636808 3_1:+653284 Msa0342720:CDS
AGGTTCTTGAAAGAGTTCAG+AGG 0.645167 3_1:+658022 Msa0342720:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATCTATTTATTTGT+GGG + chr3_1:653451-653470 Msa0342720:intron 10.0%
!! AAGAAAAAAATTATAATATG+GGG - chr3_1:662151-662170 None:intergenic 10.0%
!!! TAAGCTATTTTTTATAAATA+AGG - chr3_1:653980-653999 None:intergenic 10.0%
!! AATCAAAAATAAAAAACATA+TGG - chr3_1:658829-658848 None:intergenic 10.0%
!!! TTGTTTTTTTAAAATGAAAT+CGG + chr3_1:660513-660532 Msa0342720:intron 10.0%
!! AAGAAAAAAATTATAATATG+GGG + chr3_1:662151-662170 Msa0342720:intron 10.0%
!! AGGAAAAAATAATATTAAAT+TGG - chr3_1:662994-663013 None:intergenic 10.0%
!!! CAAATAAATAGATTTTATAG+TGG - chr3_1:653450-653469 None:intergenic 15.0%
!! CTATAAAATCTATTTATTTG+TGG + chr3_1:653450-653469 Msa0342720:intron 15.0%
!!! AGTTGGTTTTTAAAATTAAT+CGG - chr3_1:653630-653649 None:intergenic 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG - chr3_1:660283-660302 None:intergenic 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG - chr3_1:660283-660302 None:intergenic 15.0%
!!! AGTTGGTTTTTAAAATTAAT+CGG - chr3_1:653630-653649 None:intergenic 15.0%
!!! ATAAGTTATTTTGAATAAGT+TGG - chr3_1:654314-654333 None:intergenic 15.0%
!!! AGTTGGTTTTTAAAATTAAT+CGG - chr3_1:653630-653649 None:intergenic 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG - chr3_1:660283-660302 None:intergenic 15.0%
!!! AGTTGGTTTTTAAAATTAAT+CGG - chr3_1:653630-653649 None:intergenic 15.0%
!!! ATAAGTTATTTTGAATAAGT+TGG - chr3_1:654314-654333 None:intergenic 15.0%
!!! AGTTGGTTTTTAAAATTAAT+CGG - chr3_1:653630-653649 None:intergenic 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG - chr3_1:660283-660302 None:intergenic 15.0%
!!! AGTTGGTTTTTAAAATTAAT+CGG - chr3_1:653630-653649 None:intergenic 15.0%
!!! ATAAGTTATTTTGAATAAGT+TGG - chr3_1:654314-654333 None:intergenic 15.0%
!!! AGTTGGTTTTTAAAATTAAT+CGG - chr3_1:653630-653649 None:intergenic 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG - chr3_1:660283-660302 None:intergenic 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG - chr3_1:660283-660302 None:intergenic 15.0%
!!! AGTTGTTTTTAAAATGAAAT+CGG - chr3_1:661418-661437 None:intergenic 15.0%
!! ATGAAATTATTATTGTTAGT+TGG - chr3_1:659754-659773 None:intergenic 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG + chr3_1:660283-660302 Msa0342720:intron 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG + chr3_1:660283-660302 Msa0342720:intron 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG + chr3_1:660283-660302 Msa0342720:intron 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG + chr3_1:660283-660302 Msa0342720:intron 15.0%
!!! AGTTGTTTTTAAAATGAAAT+CGG + chr3_1:661418-661437 Msa0342720:intron 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG + chr3_1:660283-660302 Msa0342720:intron 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG + chr3_1:660283-660302 Msa0342720:intron 15.0%
!!! ATGTTTTGTATAAAAAGTAA+AGG - chr3_1:662576-662595 None:intergenic 15.0%
!! ATATCATAATCAAAAATCAA+TGG + chr3_1:662670-662689 Msa0342720:intron 15.0%
!!! ATTTTATCAACAAATTACAA+AGG + chr3_1:662795-662814 Msa0342720:intron 15.0%
!!! AATAAGTTGTTTTGAATAAG+CGG - chr3_1:660132-660151 None:intergenic 20.0%
!!! ATAAGCTATTTTGAATAAGT+TGG - chr3_1:653647-653666 None:intergenic 20.0%
!!! AATAAGTTGTTTTGAATAAG+CGG - chr3_1:660132-660151 None:intergenic 20.0%
!!! AATAAGCTATTTTGAATAAG+CGG - chr3_1:653648-653667 None:intergenic 20.0%
!! TATTCAAAACAGCTTATTTA+TGG + chr3_1:653774-653793 Msa0342720:intron 20.0%
!!! ATAAGCTATTTTGAATAAGT+TGG - chr3_1:653647-653666 None:intergenic 20.0%
!! TATTCAAAACAGCTTATTTA+TGG + chr3_1:653774-653793 Msa0342720:intron 20.0%
!!! ATAAGCTATTTTGAATAAGT+TGG - chr3_1:653647-653666 None:intergenic 20.0%
!! TATTCAAAACAGCTTATTTA+TGG + chr3_1:653774-653793 Msa0342720:intron 20.0%
!!! ATAAGCTATTTTGAATAAGT+TGG - chr3_1:653647-653666 None:intergenic 20.0%
!! GATTTATAATTATGAAGATG+TGG + chr3_1:657942-657961 Msa0342720:intron 20.0%
!!! TTTATTTCATTCACTTGTTT+TGG + chr3_1:658383-658402 Msa0342720:intron 20.0%
!! AAACCATTAAACAATTAGTT+TGG + chr3_1:658979-658998 Msa0342720:intron 20.0%
!! AAACCAAACTAATTGTTTAA+TGG - chr3_1:658985-659004 None:intergenic 20.0%
!!! CTTATTGATTAATTCACATT+AGG + chr3_1:659251-659270 Msa0342720:intron 20.0%
!!! TTATTACAAAACCATTTTCA+CGG + chr3_1:659335-659354 Msa0342720:intron 20.0%
!!! AAACCATTAGACAATTATTT+TGG + chr3_1:659639-659658 Msa0342720:intron 20.0%
!! AAACCAAAATAATTGTCTAA+TGG - chr3_1:659645-659664 None:intergenic 20.0%
!! AAACCATTAAACCATAATTA+TGG + chr3_1:659682-659701 Msa0342720:intron 20.0%
!! AAACCATAATTATGGTTTAA+TGG - chr3_1:659688-659707 None:intergenic 20.0%
!! TATTACTGAAACCATAATTA+TGG - chr3_1:659696-659715 None:intergenic 20.0%
!! AAATCATTACACATTTATCT+TGG + chr3_1:659777-659796 Msa0342720:intron 20.0%
!! AAACCATTAAACCATAATTA+TGG + chr3_1:659682-659701 Msa0342720:intron 20.0%
!! AAACCATAATTATGGTTTAA+TGG - chr3_1:659688-659707 None:intergenic 20.0%
!! TATTACTGAAACCATAATTA+TGG - chr3_1:659696-659715 None:intergenic 20.0%
!! ACAAATTATGTATACAAAAC+AGG - chr3_1:659990-660009 None:intergenic 20.0%
!!! ATAAGCTGTTTTGTATAAAT+AGG + chr3_1:660065-660084 Msa0342720:intron 20.0%
!!! AATAAGTTGTTTTGAATAAG+CGG + chr3_1:660132-660151 Msa0342720:intron 20.0%
!!! AATAAGTTGTTTTGAATAAG+CGG + chr3_1:660132-660151 Msa0342720:intron 20.0%
!! AAAATGTTTAGACAAATGAA+GGG + chr3_1:662747-662766 Msa0342720:intron 20.0%
!! AAATAGAATGAATTGAGAAA+AGG + chr3_1:662829-662848 Msa0342720:intron 20.0%
!! CAAATAATTCTTTTCACTTG+GGG - chr3_1:653424-653443 None:intergenic 25.0%
!! CCAAATAATTCTTTTCACTT+GGG - chr3_1:653425-653444 None:intergenic 25.0%
! CCAAGTGAAAAGAATTATTT+GGG + chr3_1:653423-653442 Msa0342720:intron 25.0%
!!! TTATAATATGGGGCTTTATT+AGG - chr3_1:653477-653496 None:intergenic 25.0%
! CTTATTCGAAACAACTTATT+AGG + chr3_1:653680-653699 Msa0342720:intron 25.0%
! CTTATTCGAAACAACTTATT+AGG + chr3_1:653680-653699 Msa0342720:intron 25.0%
! CTTATTCGAAACAACTTATT+AGG + chr3_1:653680-653699 Msa0342720:intron 25.0%
!!! AATAAGCTGTTTTGAATAAG+CGG - chr3_1:660214-660233 None:intergenic 25.0%
! CTTATTCGAAACAACTTATT+AGG + chr3_1:653680-653699 Msa0342720:intron 25.0%
!!! AATAAGCTGTTTTGAATAAG+CGG - chr3_1:660214-660233 None:intergenic 25.0%
! CTTATTCGAAACAACTTATT+AGG + chr3_1:653680-653699 Msa0342720:intron 25.0%
!!! AATAAGCTGTTTTGAATAAG+CGG - chr3_1:660214-660233 None:intergenic 25.0%
! CTTATTCGAAACAACTTATT+AGG + chr3_1:653680-653699 Msa0342720:intron 25.0%
!!! AATAAGCTGTTTTGAATAAG+CGG - chr3_1:660214-660233 None:intergenic 25.0%
! CTTATTCGAAACAACTTATT+AGG + chr3_1:653680-653699 Msa0342720:intron 25.0%
!!! AATAAGCTGTTTTGAATAAG+CGG - chr3_1:660214-660233 None:intergenic 25.0%
!! GAGATTTCAATTTTGAATTG+CGG + chr3_1:657896-657915 Msa0342720:intron 25.0%
! TGTTGTTAAATGAGAAAAAG+CGG + chr3_1:657990-658009 Msa0342720:intron 25.0%
!!! ATTTTTTTCTCTTGTTCTGA+AGG - chr3_1:658093-658112 None:intergenic 25.0%
! AAATTTATCTGAATCTGTGA+TGG + chr3_1:658188-658207 Msa0342720:intron 25.0%
! GAATTCAAACACAAAATCAT+CGG - chr3_1:658456-658475 None:intergenic 25.0%
!!! CTTGCTATGATTTTCAATTT+TGG + chr3_1:658480-658499 Msa0342720:intron 25.0%
!!! TTTTGGTTACATATAGATGA+TGG + chr3_1:658497-658516 Msa0342720:intron 25.0%
! TTTGGTTACATATAGATGAT+GGG + chr3_1:658498-658517 Msa0342720:intron 25.0%
!!! TCTTGATTTTTGGAAGAAAA+AGG + chr3_1:658573-658592 Msa0342720:CDS 25.0%
!!! ATTAGGGATTGATTTGAATT+TGG + chr3_1:658660-658679 Msa0342720:CDS 25.0%
!!! TTAGGGATTGATTTGAATTT+GGG + chr3_1:658661-658680 Msa0342720:CDS 25.0%
! AGAAATTGTCGAAATCAAAT+TGG + chr3_1:658708-658727 Msa0342720:intron 25.0%
! GAAATTGTCGAAATCAAATT+GGG + chr3_1:658709-658728 Msa0342720:intron 25.0%
!!! GTTTTGAAAATGTTCTGTTA+TGG + chr3_1:658793-658812 Msa0342720:intron 25.0%
! AAACCATTAAGTACATCTAA+TGG + chr3_1:658876-658895 Msa0342720:intron 25.0%
! AAACCATTAGATGTACTTAA+TGG - chr3_1:658882-658901 None:intergenic 25.0%
!! TTAAGTACATCTAATGGTTT+TGG + chr3_1:658882-658901 Msa0342720:intron 25.0%
!!! TTGTTTAATGGTTTTGCTAT+GGG - chr3_1:658973-658992 None:intergenic 25.0%
!!! ATTGTTTAATGGTTTTGCTA+TGG - chr3_1:658974-658993 None:intergenic 25.0%
! TATAAGTGTGTACTATTAAG+TGG + chr3_1:659275-659294 Msa0342720:intron 25.0%
!! TATTACAAAACCATTTTCAC+GGG + chr3_1:659336-659355 Msa0342720:intron 25.0%
!! AAACCATTTTCACTACAAAA+TGG + chr3_1:659494-659513 Msa0342720:intron 25.0%
!! AAACCATTTTGTAGTGAAAA+TGG - chr3_1:659500-659519 None:intergenic 25.0%
!! TTTTCACTACAAAATGGTTT+TGG + chr3_1:659500-659519 Msa0342720:intron 25.0%
!!! ATAAGCTGTTTTGAATAAGT+TGG + chr3_1:660215-660234 Msa0342720:intron 25.0%
! CTTATTCGAAACAACTTATT+AGG - chr3_1:653680-653699 None:intergenic 25.0%
!!! GTTGCTTTTTAAAATGAGAT+CGG + chr3_1:662008-662027 Msa0342720:intron 25.0%
! AGCTTAATTCTAATAAGTAG+AGG - chr3_1:662239-662258 None:intergenic 25.0%
! TATGAAAAGCTTTCAAAAGT+AGG - chr3_1:662398-662417 None:intergenic 25.0%
!! ACAAAAATTGCAATTTTGTC+TGG - chr3_1:662509-662528 None:intergenic 25.0%
! TGATTCAAGAAACATACATT+CGG - chr3_1:662537-662556 None:intergenic 25.0%
!!! ATGGTTTGGTTCTTAAAAAA+TGG - chr3_1:662607-662626 None:intergenic 25.0%
! CTTGAAATTCATAAATGGTT+TGG - chr3_1:662621-662640 None:intergenic 25.0%
! TGGTATGTAAAATTTGTATG+AGG + chr3_1:662711-662730 Msa0342720:intron 25.0%
! GAAAATGTTTAGACAAATGA+AGG + chr3_1:662746-662765 Msa0342720:intron 25.0%
! TTGAGAAAAGGAACAAAAAT+TGG + chr3_1:662841-662860 Msa0342720:intron 25.0%
!! ACATTTTGTTGAAGTTATTG+AGG + chr3_1:662918-662937 Msa0342720:intron 25.0%
! CCATAGTTATTATGTTTAGA+TGG - chr3_1:663035-663054 None:intergenic 25.0%
! CCATCTAAACATAATAACTA+TGG + chr3_1:663032-663051 Msa0342720:CDS 25.0%
! AATTTATGATGCTGCAAAAA+TGG + chr3_1:663073-663092 Msa0342720:CDS 25.0%
GTGTAGAAAGCAATTATGTT+GGG - chr3_1:662269-662288 None:intergenic 30.0%
CCCAAGTGAAAAGAATTATT+TGG + chr3_1:653422-653441 Msa0342720:intron 30.0%
! CCCAAATAATTCTTTTCACT+TGG - chr3_1:653426-653445 None:intergenic 30.0%
ACACATACCTTAGAAGAATA+GGG - chr3_1:657834-657853 None:intergenic 30.0%
AGAATCACTATCATAACCTT+AGG - chr3_1:658251-658270 None:intergenic 30.0%
!! ATATAGATGATGGGTTTGAT+TGG + chr3_1:658507-658526 Msa0342720:intron 30.0%
! TCCTTTGCATTCTTGATTTT+TGG + chr3_1:658563-658582 Msa0342720:CDS 30.0%
TCCAAAAATCAAGAATGCAA+AGG - chr3_1:658567-658586 None:intergenic 30.0%
GAATTTGGGAAAATTGATGA+TGG + chr3_1:658675-658694 Msa0342720:CDS 30.0%
TGTTGCTAAGAATTCAAAGT+TGG + chr3_1:658755-658774 Msa0342720:intron 30.0%
! TTTTCAAAACCATCAGATTC+AGG - chr3_1:658783-658802 None:intergenic 30.0%
AAACCATTAAACCACACTTA+TGG + chr3_1:659022-659041 Msa0342720:intron 30.0%
AAACCATAAGTGTGGTTTAA+TGG - chr3_1:659028-659047 None:intergenic 30.0%
TATTACTGAAACCATAAGTG+TGG - chr3_1:659036-659055 None:intergenic 30.0%
TAAATAGAATCGCGCTTTAA+TGG - chr3_1:659158-659177 None:intergenic 30.0%
!! TGTGTTGTTTATGATCAATC+CGG + chr3_1:659442-659461 Msa0342720:intron 30.0%
! AAACCATTTTCACTGCAAAA+TGG + chr3_1:659537-659556 Msa0342720:intron 30.0%
! AAACCATTTTGCAGTGAAAA+TGG - chr3_1:659543-659562 None:intergenic 30.0%
! TTTTCACTGCAAAATGGTTT+TGG + chr3_1:659543-659562 Msa0342720:intron 30.0%
!! ATTGTCTAATGGTTTTGCTA+TGG - chr3_1:659634-659653 None:intergenic 30.0%
TGGATTATGAGTTTCTTTAC+TGG - chr3_1:659887-659906 None:intergenic 30.0%
! AATATGGGGCTTTAATTTAG+TGG + chr3_1:662165-662184 Msa0342720:intron 30.0%
! ATATGGGGCTTTAATTTAGT+GGG + chr3_1:662166-662185 Msa0342720:intron 30.0%
!! TTTAAGTGGGCTTTGAAATT+TGG + chr3_1:662200-662219 Msa0342720:intron 30.0%
!! TTAAGTGGGCTTTGAAATTT+GGG + chr3_1:662201-662220 Msa0342720:intron 30.0%
TAGAATTAAGCTTTCACTTG+AGG + chr3_1:662247-662266 Msa0342720:intron 30.0%
ATGTAGAAAGCAATTATGCA+CGG + chr3_1:662291-662310 Msa0342720:intron 30.0%
TAACCAAATGCTTATACCAA+GGG - chr3_1:662352-662371 None:intergenic 30.0%
!!! TGGTTAGTCTATTTTTCTTG+AGG + chr3_1:662366-662385 Msa0342720:intron 30.0%
CTTGCTGAAGATAAAATTGA+AGG + chr3_1:662772-662791 Msa0342720:intron 30.0%
!! TTTCCTGCTTTTCAGATATA+TGG + chr3_1:663008-663027 Msa0342720:intron 30.0%
ATAAATTGCAGGGAATGATT+GGG - chr3_1:663060-663079 None:intergenic 30.0%
ATTTACATACTGCAGAATCA+TGG + chr3_1:663102-663121 Msa0342720:CDS 30.0%
GTGTAGAAAGCAATTATGCA+CGG - chr3_1:653380-653399 None:intergenic 35.0%
GGTGTAGAAAGCAATTATGT+TGG - chr3_1:662268-662287 None:intergenic 35.0%
AAACAGCTTATTCGATTCCT+AGG + chr3_1:657778-657797 Msa0342720:intron 35.0%
AGATCATCCCTATTCTTCTA+AGG + chr3_1:657824-657843 Msa0342720:intron 35.0%
CACACATACCTTAGAAGAAT+AGG - chr3_1:657835-657854 None:intergenic 35.0%
! TACTGATTGCAAATCTCACA+AGG + chr3_1:657966-657985 Msa0342720:intron 35.0%
ACTCTTTCAAGAACCTTCAA+TGG - chr3_1:658018-658037 None:intergenic 35.0%
!!! TTTTTCTCTTGTTCTGAAGG+TGG - chr3_1:658090-658109 None:intergenic 35.0%
!! TTCTTTTCTTTCTCTGGCTT+AGG - chr3_1:658132-658151 None:intergenic 35.0%
! TCAGCTTTCTTTTCTTTCTC+TGG - chr3_1:658138-658157 None:intergenic 35.0%
GAAAGAAAAGAAAGCTGAAG+AGG + chr3_1:658140-658159 Msa0342720:CDS 35.0%
TTATTATATGGTGCAGCCTA+AGG + chr3_1:658232-658251 Msa0342720:intron 35.0%
AGACGCATTGAGAAAATCAA+AGG + chr3_1:658314-658333 Msa0342720:CDS 35.0%
!!! CTTGTTTTGGTTCAATTCTC+AGG + chr3_1:658396-658415 Msa0342720:intron 35.0%
! TGGTTTTCTTTGATCCAACA+TGG - chr3_1:658862-658881 None:intergenic 35.0%
AAACCATTTCCACAGCAAAA+TGG + chr3_1:658919-658938 Msa0342720:intron 35.0%
!! AAACCATTTTGCTGTGGAAA+TGG - chr3_1:658925-658944 None:intergenic 35.0%
! TTTCCACAGCAAAATGGTTT+TGG + chr3_1:658925-658944 Msa0342720:intron 35.0%
!! TAATGGTTTTGCTATGGGTA+TGG - chr3_1:658968-658987 None:intergenic 35.0%
GACGAGACTTTACAAAAAAG+TGG + chr3_1:659225-659244 Msa0342720:intron 35.0%
! AAAACCATTTTCACGGGAAT+TGG + chr3_1:659342-659361 Msa0342720:intron 35.0%
! AAACCATTTTCACGGGAATT+GGG + chr3_1:659343-659362 Msa0342720:intron 35.0%
TGATTCGATGTGAAATCTGT+TGG + chr3_1:659369-659388 Msa0342720:intron 35.0%
TGAAATCTGTTGGTATAAGC+TGG + chr3_1:659379-659398 Msa0342720:intron 35.0%
TGTTGGTATAAGCTGGAATT+CGG + chr3_1:659386-659405 Msa0342720:intron 35.0%
TGTTTATGATCAATCCGGTT+CGG + chr3_1:659447-659466 Msa0342720:intron 35.0%
AAACCATTTCCACAGCAAAA+CGG + chr3_1:658919-658938 Msa0342720:intron 35.0%
!! TAATGGTTTTGCTATGGCTA+TGG - chr3_1:659628-659647 None:intergenic 35.0%
GTTAGAGAGAGAAATGAGTA+TGG - chr3_1:659907-659926 None:intergenic 35.0%
!!! GGCTTGAAGCTTTTTTAAGT+GGG + chr3_1:662187-662206 Msa0342720:intron 35.0%
GGTGTAGAAAGCAATTATGT+TGG + chr3_1:662268-662287 Msa0342720:intron 35.0%
AACCAAATGCTTATACCAAG+GGG - chr3_1:662351-662370 None:intergenic 35.0%
CTAACCAAATGCTTATACCA+AGG - chr3_1:662353-662372 None:intergenic 35.0%
! CCTGAAAGTACACATTTAGT+CGG - chr3_1:662447-662466 None:intergenic 35.0%
GGTGGCTTGAAATTCATAAA+TGG - chr3_1:662626-662645 None:intergenic 35.0%
CATAAATTGCAGGGAATGAT+TGG - chr3_1:663061-663080 None:intergenic 35.0%
TTGCAGCATCATAAATTGCA+GGG - chr3_1:663070-663089 None:intergenic 35.0%
TTTGCAGCATCATAAATTGC+AGG - chr3_1:663071-663090 None:intergenic 35.0%
GTCAAGTACAACACAAAGTT+TGG + chr3_1:663126-663145 Msa0342720:CDS 35.0%
TAAGTTCTCTCACTTTCGAG+TGG - chr3_1:653249-653268 None:intergenic 40.0%
CATTCACTGGGAAAGAAAGA+TGG + chr3_1:653296-653315 Msa0342720:CDS 40.0%
GGAAAGAAAGATGGTCTCTT+AGG + chr3_1:653305-653324 Msa0342720:CDS 40.0%
ATGGTCTCTTAGGAATACCT+TGG + chr3_1:653315-653334 Msa0342720:CDS 40.0%
CTCTTAGGAATACCTTGGTA+TGG + chr3_1:653320-653339 Msa0342720:intron 40.0%
! CCATAACTTTTGCCATACCA+AGG - chr3_1:653335-653354 None:intergenic 40.0%
CCTTGGTATGGCAAAAGTTA+TGG + chr3_1:653332-653351 Msa0342720:intron 40.0%
GGCAAAAGTTATGGTGCATA+AGG + chr3_1:653341-653360 Msa0342720:intron 40.0%
GATGATCTGCAATTCCGTTT+GGG - chr3_1:657812-657831 None:intergenic 40.0%
AGAAAAAGCGGATCCATTGA+AGG + chr3_1:658002-658021 Msa0342720:intron 40.0%
AGGTTCTTGAAAGAGTTCAG+AGG + chr3_1:658022-658041 Msa0342720:intron 40.0%
!!! CTTGTTCTGAAGGTGGTTTT+GGG - chr3_1:658083-658102 None:intergenic 40.0%
!!! TCTTGTTCTGAAGGTGGTTT+TGG - chr3_1:658084-658103 None:intergenic 40.0%
!! GATGATGGGTTTGATTGGTT+TGG + chr3_1:658512-658531 Msa0342720:intron 40.0%
GAGAATTGGGAGTAATGAGT+TGG + chr3_1:658633-658652 Msa0342720:CDS 40.0%
! AATTGGGAGTAATGAGTTGG+AGG + chr3_1:658636-658655 Msa0342720:CDS 40.0%
! ATTGGGAGTAATGAGTTGGA+GGG + chr3_1:658637-658656 Msa0342720:CDS 40.0%
! AGTAATGAGTTGGAGGGATT+AGG + chr3_1:658643-658662 Msa0342720:CDS 40.0%
! GTAATGAGTTGGAGGGATTA+GGG + chr3_1:658644-658663 Msa0342720:CDS 40.0%
!! GGGAAAATTGATGATGGACT+TGG + chr3_1:658681-658700 Msa0342720:CDS 40.0%
GATTGTGATATGCACCATGT+TGG + chr3_1:658845-658864 Msa0342720:intron 40.0%
! ACTCCAAAACCATTTTGCTG+TGG - chr3_1:658931-658950 None:intergenic 40.0%
TTTCCCAATTCCCGTGAAAA+TGG - chr3_1:659349-659368 None:intergenic 40.0%
!!! TGGTTTTGGAGTCTAACTCA+CGG + chr3_1:659514-659533 Msa0342720:intron 40.0%
!!! TGGTTTTGGAGTACAACTCA+CGG + chr3_1:658896-658915 Msa0342720:intron 40.0%
!! AAACCGTTTTGCTGTGGAAA+TGG - chr3_1:659586-659605 None:intergenic 40.0%
! GTTTCAAAACCGTTTTGCTG+TGG - chr3_1:659592-659611 None:intergenic 40.0%
!!! GGGCTTGAAGCTTTTTTAAG+TGG + chr3_1:662186-662205 Msa0342720:intron 40.0%
ACCAAATGCTTATACCAAGG+GGG - chr3_1:662350-662369 None:intergenic 40.0%
CCGACTAAATGTGTACTTTC+AGG + chr3_1:662444-662463 Msa0342720:intron 40.0%
AAACCAGACGAAAAATGAGG+TGG - chr3_1:662644-662663 None:intergenic 40.0%
GTCAAACCAGACGAAAAATG+AGG - chr3_1:662647-662666 None:intergenic 40.0%
AGTGACAGAAACCAAAAGAG+AGG - chr3_1:662875-662894 None:intergenic 40.0%
GGTCCATATATCTGAAAAGC+AGG - chr3_1:663014-663033 None:intergenic 40.0%
!! ACATGCTTCGTTGGTTCTTT+CGG + chr3_1:663169-663188 Msa0342720:CDS 40.0%
ATGATTGAGCGTGCATTCAC+TGG + chr3_1:653283-653302 Msa0342720:CDS 45.0%
TGATTGAGCGTGCATTCACT+GGG + chr3_1:653284-653303 Msa0342720:CDS 45.0%
GCAATTATGCACGGTGCATA+AGG - chr3_1:662300-662319 None:intergenic 45.0%
! TCTGCAATTCCGTTTGGGAT+CGG - chr3_1:657807-657826 None:intergenic 45.0%
GGATGATCTGCAATTCCGTT+TGG - chr3_1:657813-657832 None:intergenic 45.0%
!!! TCTGAAGGTGGTTTTGGGAT+CGG - chr3_1:658078-658097 None:intergenic 45.0%
!! GGTTTGGTGATGAAGTTTGC+TGG + chr3_1:658528-658547 Msa0342720:intron 45.0%
! AGGACGACGTTGATTGTGAA+AGG + chr3_1:658593-658612 Msa0342720:CDS 45.0%
ACGTTGAAGAGGAGGAGAAT+TGG + chr3_1:658619-658638 Msa0342720:CDS 45.0%
CGTTGAAGAGGAGGAGAATT+GGG + chr3_1:658620-658639 Msa0342720:CDS 45.0%
!! AAGTTGGTGCCTGAATCTGA+TGG + chr3_1:658771-658790 Msa0342720:intron 45.0%
!! TGATCAATCCGGTTCGGATT+TGG + chr3_1:659453-659472 Msa0342720:intron 45.0%
TGCTAACACCAAATCCGAAC+CGG - chr3_1:659464-659483 None:intergenic 45.0%
TGGCTATGGTTTCTGTGAGT+TGG - chr3_1:659614-659633 None:intergenic 45.0%
GCAATTATGCACGGTGCATA+AGG + chr3_1:662300-662319 Msa0342720:intron 45.0%
ACCCCCTTGGTATAAGCATT+TGG + chr3_1:662346-662365 Msa0342720:intron 45.0%
! AGCTTTTCATAAGCGCGCAT+CGG + chr3_1:662407-662426 Msa0342720:intron 45.0%
!! AAGCCACCTCATTTTTCGTC+TGG + chr3_1:662638-662657 Msa0342720:intron 45.0%
! TGGCAATGTCTCCTCTCTTT+TGG + chr3_1:662861-662880 Msa0342720:intron 45.0%
CTGCTGATCTGATGATCAAG+TGG + chr3_1:662893-662912 Msa0342720:intron 45.0%
AGTCATCAGACATGCTTCGT+TGG + chr3_1:663160-663179 Msa0342720:CDS 45.0%
!! CATGCTTCGTTGGTTCTTTC+GGG + chr3_1:663170-663189 Msa0342720:CDS 45.0%
!! TAAGAAAAAAATTATAATAT+GGG - chr3_1:662150-662169 None:intergenic 5.0%
!! TTAAGAAAAAAATTATAATA+TGG - chr3_1:662149-662168 None:intergenic 5.0%
!!! ATCATTTTTATTTTATTATA+TGG + chr3_1:658220-658239 Msa0342720:intron 5.0%
!! TTAAGAAAAAAATTATAATA+TGG + chr3_1:662149-662168 Msa0342720:intron 5.0%
!! TAAGAAAAAAATTATAATAT+GGG + chr3_1:662150-662169 Msa0342720:intron 5.0%
TTCTCAGGTCCCATCCTTTC+AGG + chr3_1:658411-658430 Msa0342720:intron 50.0%
GTGAAAGGACGACGTTGAAG+AGG + chr3_1:658608-658627 Msa0342720:CDS 50.0%
AAAGGACGACGTTGAAGAGG+AGG + chr3_1:658611-658630 Msa0342720:CDS 50.0%
GGGTGTGGTTATGGTGCATA+AGG - chr3_1:662330-662349 None:intergenic 50.0%
! ATACCAAGGGGGTGTGGTTA+TGG - chr3_1:662339-662358 None:intergenic 50.0%
ATGCTTATACCAAGGGGGTG+TGG - chr3_1:662345-662364 None:intergenic 50.0%
CCTAGGTCGCCGATCCCAAA+CGG + chr3_1:657795-657814 Msa0342720:intron 60.0%
GCACCATAACCACACCCCCT+TGG + chr3_1:662333-662352 Msa0342720:intron 60.0%
! CCGTTTGGGATCGGCGACCT+AGG - chr3_1:657798-657817 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 653241 663205 653241 ID=Msa0342720;Name=Msa0342720
chr3_1 mRNA 653241 663205 653241 ID=Msa0342720-mRNA-1;Parent=Msa0342720;Name=Msa0342720-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|0.16|1|1|6|0|230
chr3_1 exon 653241 653336 653241 ID=Msa0342720-mRNA-1:exon:80;Parent=Msa0342720-mRNA-1
chr3_1 exon 658024 658161 658024 ID=Msa0342720-mRNA-1:exon:81;Parent=Msa0342720-mRNA-1
chr3_1 exon 658248 658335 658248 ID=Msa0342720-mRNA-1:exon:82;Parent=Msa0342720-mRNA-1
chr3_1 exon 658418 658445 658418 ID=Msa0342720-mRNA-1:exon:83;Parent=Msa0342720-mRNA-1
chr3_1 exon 658543 658702 658543 ID=Msa0342720-mRNA-1:exon:84;Parent=Msa0342720-mRNA-1
chr3_1 exon 663023 663205 663023 ID=Msa0342720-mRNA-1:exon:85;Parent=Msa0342720-mRNA-1
chr3_1 CDS 653241 653336 653241 ID=Msa0342720-mRNA-1:cds;Parent=Msa0342720-mRNA-1
chr3_1 CDS 658024 658161 658024 ID=Msa0342720-mRNA-1:cds;Parent=Msa0342720-mRNA-1
chr3_1 CDS 658248 658335 658248 ID=Msa0342720-mRNA-1:cds;Parent=Msa0342720-mRNA-1
chr3_1 CDS 658418 658445 658418 ID=Msa0342720-mRNA-1:cds;Parent=Msa0342720-mRNA-1
chr3_1 CDS 658543 658702 658543 ID=Msa0342720-mRNA-1:cds;Parent=Msa0342720-mRNA-1
chr3_1 CDS 663023 663205 663023 ID=Msa0342720-mRNA-1:cds;Parent=Msa0342720-mRNA-1
Gene Sequence

>Msa0342720

ATGGACCACTCGAAAGTGAGAGAACTTAATGATAGACTTATGATGATTGAGCGTGCATTCACTGGGAAAGAAAGATGGTCTCTTAGGAATACCTTGGTTCTTGAAAGAGTTCAGAGGAAGAGTCATAGACAAGTTGAGCTTCTTTCTCCGATCCCAAAACCACCTTCAGAACAAGAGAAAAAAATTGAAGAGAAAGAGAAACCTAAGCCAGAGAAAGAAAAGAAAGCTGAAGAGCCTAAGGTTATGATAGTGATTCTGAAAGTTCACATGTATTGTGAAGCTTGTTCACAAGAAATCAAGAGACGCATTGAGAAAATCAAAGGTCCCATCCTTTCAGGAATTTGTCAACTTTTGCTGGAGATTTTCAAGTTCCTTTGCATTCTTGATTTTTGGAAGAAAAAGGACGACGTTGATTGTGAAAGGACGACGTTGAAGAGGAGGAGAATTGGGAGTAATGAGTTGGAGGGATTAGGGATTGATTTGAATTTGGGAAAATTGATGATGGACTTGATATATGGACCATCTAAACATAATAACTATGGCTCCCAATCATTCCCTGCAATTTATGATGCTGCAAAAATGGCAAAAAATTTACATACTGCAGAATCATGGAGTCAAGTACAACACAAAGTTTGGAGAGTCTCAAGAGTCATCAGACATGCTTCGTTGGTTCTTTCGGGTCAACTAACATGA

Protein sequence

>Msa0342720

MDHSKVRELNDRLMMIERAFTGKERWSLRNTLVLERVQRKSHRQVELLSPIPKPPSEQEKKIEEKEKPKPEKEKKAEEPKVMIVILKVHMYCEACSQEIKRRIEKIKGPILSGICQLLLEIFKFLCILDFWKKKDDVDCERTTLKRRRIGSNELEGLGIDLNLGKLMMDLIYGPSKHNNYGSQSFPAIYDAAKMAKNLHTAESWSQVQHKVWRVSRVIRHASLVLSGQLT*