Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273230 | sp|V9M2S5|RPV1_VITRO | 40.860 | 93 | 53 | 1 | 6 | 96 | 692 | 784 | 3.53e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273230 | A0A2K3NH20 | 59.770 | 348 | 81 | 3 | 4 | 292 | 131 | 478 | 1.25e-126 | 379 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014330 | Msa1273230 | 0.810581 | 1.073549e-50 | -8.615850e-47 |
| Msa0015750 | Msa1273230 | 0.820265 | 7.513661e-53 | -8.615850e-47 |
| Msa0016570 | Msa1273230 | 0.833043 | 6.690263e-56 | -8.615850e-47 |
| Msa0016580 | Msa1273230 | 0.825289 | 5.082991e-54 | -8.615850e-47 |
| Msa0102070 | Msa1273230 | 0.824901 | 6.278795e-54 | -8.615850e-47 |
| Msa0107580 | Msa1273230 | 0.804393 | 2.207093e-49 | -8.615850e-47 |
| Msa0110270 | Msa1273230 | 0.817306 | 3.531674e-52 | -8.615850e-47 |
| Msa0111510 | Msa1273230 | 0.818198 | 2.221998e-52 | -8.615850e-47 |
| Msa0639610 | Msa1273230 | 0.812264 | 4.626733e-51 | -8.615850e-47 |
| Msa0661870 | Msa1273230 | 0.806795 | 6.915361e-50 | -8.615850e-47 |
| Msa0694370 | Msa1273230 | 0.800260 | 1.566298e-48 | -8.615850e-47 |
| Msa0726140 | Msa1273230 | 0.846309 | 2.355879e-59 | -8.615850e-47 |
| Msa0735080 | Msa1273230 | 0.825962 | 3.520173e-54 | -8.615850e-47 |
| Msa0743810 | Msa1273230 | 0.857414 | 1.658845e-62 | -8.615850e-47 |
| Msa0745060 | Msa1273230 | 0.842324 | 2.772805e-58 | -8.615850e-47 |
| Msa0766630 | Msa1273230 | 0.818987 | 1.470865e-52 | -8.615850e-47 |
| Msa0768370 | Msa1273230 | 0.817143 | 3.842957e-52 | -8.615850e-47 |
| Msa0777870 | Msa1273230 | 0.801866 | 7.355207e-49 | -8.615850e-47 |
| Msa0783160 | Msa1273230 | 0.862970 | 3.474175e-64 | -8.615850e-47 |
| Msa0787600 | Msa1273230 | 0.810867 | 9.310121e-51 | -8.615850e-47 |
| Msa0811080 | Msa1273230 | 0.800198 | 1.612667e-48 | -8.615850e-47 |
| Msa0825860 | Msa1273230 | 0.848967 | 4.372431e-60 | -8.615850e-47 |
| Msa0833290 | Msa1273230 | 0.814750 | 1.314018e-51 | -8.615850e-47 |
| Msa0123810 | Msa1273230 | 0.870455 | 1.440070e-66 | -8.615850e-47 |
| Msa0142220 | Msa1273230 | 0.806346 | 8.600736e-50 | -8.615850e-47 |
| Msa0145750 | Msa1273230 | 0.811689 | 6.173093e-51 | -8.615850e-47 |
| Msa0153910 | Msa1273230 | 0.845500 | 3.906483e-59 | -8.615850e-47 |
| Msa0227480 | Msa1273230 | 0.812698 | 3.719570e-51 | -8.615850e-47 |
| Msa0231000 | Msa1273230 | 0.822274 | 2.585292e-53 | -8.615850e-47 |
| Msa0232850 | Msa1273230 | 0.844815 | 5.982599e-59 | -8.615850e-47 |
| Msa1230430 | Msa1273230 | 0.911881 | 3.677983e-83 | -8.615850e-47 |
| Msa1246880 | Msa1273230 | 0.813389 | 2.624452e-51 | -8.615850e-47 |
| Msa1249490 | Msa1273230 | 0.814898 | 1.218224e-51 | -8.615850e-47 |
| Msa1269670 | Msa1273230 | 0.836724 | 7.910476e-57 | -8.615850e-47 |
| Msa1270230 | Msa1273230 | 0.831415 | 1.691498e-55 | -8.615850e-47 |
| Msa1270240 | Msa1273230 | 0.827747 | 1.318870e-54 | -8.615850e-47 |
| Msa1270270 | Msa1273230 | 0.849337 | 3.450503e-60 | -8.615850e-47 |
| Msa1273230 | Msa1283330 | 0.879385 | 1.301519e-69 | -8.615850e-47 |
| Msa1273230 | Msa1285930 | 0.842496 | 2.496001e-58 | -8.615850e-47 |
| Msa1273230 | Msa1287800 | 0.839384 | 1.636060e-57 | -8.615850e-47 |
| Msa1273230 | Msa1287810 | 0.851567 | 8.162045e-61 | -8.615850e-47 |
| Msa1273230 | Msa1297210 | 0.807280 | 5.459226e-50 | -8.615850e-47 |
| Msa1273230 | Msa1310120 | 0.819513 | 1.116566e-52 | -8.615850e-47 |
| Msa1273230 | Msa1340590 | 0.802343 | 5.869708e-49 | -8.615850e-47 |
| Msa1273230 | Msa1369430 | 0.802602 | 5.189270e-49 | -8.615850e-47 |
| Msa1273230 | Msa1370210 | 0.810643 | 1.040946e-50 | -8.615850e-47 |
| Msa1273230 | Msa1386330 | 0.810083 | 1.374961e-50 | -8.615850e-47 |
| Msa1273230 | Msa1397580 | 0.809950 | 1.468406e-50 | -8.615850e-47 |
| Msa1273230 | Msa1400720 | 0.805540 | 1.270577e-49 | -8.615850e-47 |
| Msa1273230 | Msa1402790 | 0.852667 | 3.972805e-61 | -8.615850e-47 |
| Msa1273230 | Msa1404000 | 0.854732 | 1.011562e-61 | -8.615850e-47 |
| Msa1273230 | Msa1408780 | 0.808590 | 2.874548e-50 | -8.615850e-47 |
| Msa1273230 | Msa1415310 | 0.827089 | 1.896246e-54 | -8.615850e-47 |
| Msa1273230 | Msa1422180 | 0.841207 | 5.464611e-58 | -8.615850e-47 |
| Msa1273230 | Msa1433120 | 0.821113 | 4.797054e-53 | -8.615850e-47 |
| Msa0365500 | Msa1273230 | 0.831250 | 1.857184e-55 | -8.615850e-47 |
| Msa0384800 | Msa1273230 | 0.834710 | 2.560006e-56 | -8.615850e-47 |
| Msa0397350 | Msa1273230 | 0.808854 | 2.523832e-50 | -8.615850e-47 |
| Msa0402290 | Msa1273230 | 0.810678 | 1.023108e-50 | -8.615850e-47 |
| Msa0414410 | Msa1273230 | 0.821710 | 3.493170e-53 | -8.615850e-47 |
| Msa0414420 | Msa1273230 | 0.837609 | 4.698854e-57 | -8.615850e-47 |
| Msa0423020 | Msa1273230 | 0.801578 | 8.427751e-49 | -8.615850e-47 |
| Msa0429880 | Msa1273230 | 0.800926 | 1.146061e-48 | -8.615850e-47 |
| Msa0435230 | Msa1273230 | 0.811592 | 6.480424e-51 | -8.615850e-47 |
| Msa0437990 | Msa1273230 | 0.808649 | 2.791360e-50 | -8.615850e-47 |
| Msa0444130 | Msa1273230 | 0.838144 | 3.423481e-57 | -8.615850e-47 |
| Msa0450000 | Msa1273230 | 0.813715 | 2.223999e-51 | -8.615850e-47 |
| Msa0452900 | Msa1273230 | 0.849717 | 2.703095e-60 | -8.615850e-47 |
| Msa0453120 | Msa1273230 | 0.816158 | 6.388192e-52 | -8.615850e-47 |
| Msa0454910 | Msa1273230 | 0.820890 | 5.398862e-53 | -8.615850e-47 |
| Msa0459170 | Msa1273230 | 0.805486 | 1.304074e-49 | -8.615850e-47 |
| Msa0980090 | Msa1273230 | 0.805702 | 1.175111e-49 | -8.615850e-47 |
| Msa0983090 | Msa1273230 | 0.809774 | 1.602763e-50 | -8.615850e-47 |
| Msa0986360 | Msa1273230 | 0.837518 | 4.958233e-57 | -8.615850e-47 |
| Msa0989060 | Msa1273230 | 0.864944 | 8.444370e-65 | -8.615850e-47 |
| Msa0998690 | Msa1273230 | 0.811843 | 5.717308e-51 | -8.615850e-47 |
| Msa1011610 | Msa1273230 | 0.801151 | 1.030866e-48 | -8.615850e-47 |
| Msa1014540 | Msa1273230 | 0.809278 | 2.047971e-50 | -8.615850e-47 |
| Msa1016280 | Msa1273230 | 0.833554 | 4.989104e-56 | -8.615850e-47 |
| Msa1024240 | Msa1273230 | 0.822893 | 1.856571e-53 | -8.615850e-47 |
| Msa1025360 | Msa1273230 | 0.859650 | 3.571640e-63 | -8.615850e-47 |
| Msa1025370 | Msa1273230 | 0.858105 | 1.034739e-62 | -8.615850e-47 |
| Msa1044830 | Msa1273230 | 0.853679 | 2.037827e-61 | -8.615850e-47 |
| Msa1044840 | Msa1273230 | 0.858710 | 6.832665e-63 | -8.615850e-47 |
| Msa1057920 | Msa1273230 | 0.816658 | 4.937098e-52 | -8.615850e-47 |
| Msa1060840 | Msa1273230 | 0.857695 | 1.369506e-62 | -8.615850e-47 |
| Msa1079180 | Msa1273230 | 0.803283 | 3.754234e-49 | -8.615850e-47 |
| Msa1092990 | Msa1273230 | 0.837907 | 3.939092e-57 | -8.615850e-47 |
| Msa1099970 | Msa1273230 | 0.808800 | 2.591936e-50 | -8.615850e-47 |
| Msa1100980 | Msa1273230 | 0.851997 | 6.163950e-61 | -8.615850e-47 |
| Msa0251320 | Msa1273230 | 0.827761 | 1.308436e-54 | -8.615850e-47 |
| Msa0267000 | Msa1273230 | 0.849922 | 2.368177e-60 | -8.615850e-47 |
| Msa0267010 | Msa1273230 | 0.850178 | 2.008369e-60 | -8.615850e-47 |
| Msa0270520 | Msa1273230 | 0.842403 | 2.641272e-58 | -8.615850e-47 |
| Msa0304170 | Msa1273230 | 0.803373 | 3.596509e-49 | -8.615850e-47 |
| Msa0306460 | Msa1273230 | 0.826689 | 2.363226e-54 | -8.615850e-47 |
| Msa0309020 | Msa1273230 | 0.817024 | 4.086763e-52 | -8.615850e-47 |
| Msa0342240 | Msa1273230 | 0.831399 | 1.706616e-55 | -8.615850e-47 |
| Msa0342720 | Msa1273230 | 0.806848 | 6.740697e-50 | -8.615850e-47 |
| Msa0349360 | Msa1273230 | 0.813452 | 2.542100e-51 | -8.615850e-47 |
| Msa0355220 | Msa1273230 | 0.803330 | 3.669722e-49 | -8.615850e-47 |
| Msa0360510 | Msa1273230 | 0.815896 | 7.307978e-52 | -8.615850e-47 |
| Msa1109440 | Msa1273230 | 0.843890 | 1.060824e-58 | -8.615850e-47 |
| Msa1135740 | Msa1273230 | 0.830949 | 2.201280e-55 | -8.615850e-47 |
| Msa1136090 | Msa1273230 | 0.886443 | 3.406023e-72 | -8.615850e-47 |
| Msa1137690 | Msa1273230 | 0.819141 | 1.356923e-52 | -8.615850e-47 |
| Msa1146110 | Msa1273230 | 0.844412 | 7.682038e-59 | -8.615850e-47 |
| Msa1149360 | Msa1273230 | 0.805426 | 1.342736e-49 | -8.615850e-47 |
| Msa1150370 | Msa1273230 | 0.832226 | 1.066452e-55 | -8.615850e-47 |
| Msa1160670 | Msa1273230 | 0.819723 | 1.000116e-52 | -8.615850e-47 |
| Msa1173920 | Msa1273230 | 0.823879 | 1.091924e-53 | -8.615850e-47 |
| Msa1176760 | Msa1273230 | 0.801071 | 1.070393e-48 | -8.615850e-47 |
| Msa1178340 | Msa1273230 | 0.800747 | 1.246776e-48 | -8.615850e-47 |
| Msa1182090 | Msa1273230 | 0.915331 | 6.680397e-85 | -8.615850e-47 |
| Msa1187940 | Msa1273230 | 0.829667 | 4.528999e-55 | -8.615850e-47 |
| Msa1187950 | Msa1273230 | 0.855289 | 6.971976e-62 | -8.615850e-47 |
| Msa1192640 | Msa1273230 | 0.820264 | 7.519513e-53 | -8.615850e-47 |
| Msa0502760 | Msa1273230 | 0.800505 | 1.396916e-48 | -8.615850e-47 |
| Msa0506270 | Msa1273230 | 0.826534 | 2.574125e-54 | -8.615850e-47 |
| Msa0534540 | Msa1273230 | 0.805743 | 1.152083e-49 | -8.615850e-47 |
| Msa0564890 | Msa1273230 | 0.832711 | 8.090505e-56 | -8.615850e-47 |
| Msa0598780 | Msa1273230 | 0.803661 | 3.133731e-49 | -8.615850e-47 |
| Msa0846330 | Msa1273230 | 0.812712 | 3.692499e-51 | -8.615850e-47 |
| Msa0846350 | Msa1273230 | 0.831597 | 1.525417e-55 | -8.615850e-47 |
| Msa0854980 | Msa1273230 | 0.825898 | 3.646547e-54 | -8.615850e-47 |
| Msa0858980 | Msa1273230 | 0.805012 | 1.638906e-49 | -8.615850e-47 |
| Msa0865320 | Msa1273230 | 0.833716 | 4.546153e-56 | -8.615850e-47 |
| Msa0877250 | Msa1273230 | 0.807068 | 6.055558e-50 | -8.615850e-47 |
| Msa0884150 | Msa1273230 | 0.810460 | 1.140302e-50 | -8.615850e-47 |
| Msa0885280 | Msa1273230 | 0.845386 | 4.195716e-59 | -8.615850e-47 |
| Msa0885290 | Msa1273230 | 0.844743 | 6.258709e-59 | -8.615850e-47 |
| Msa0887920 | Msa1273230 | 0.807236 | 5.579563e-50 | -8.615850e-47 |
| Msa0888370 | Msa1273230 | 0.818932 | 1.514455e-52 | -8.615850e-47 |
| Msa0889850 | Msa1273230 | 0.800273 | 1.557242e-48 | -8.615850e-47 |
| Msa0899430 | Msa1273230 | 0.808693 | 2.731786e-50 | -8.615850e-47 |
| Msa0907260 | Msa1273230 | 0.841228 | 5.397038e-58 | -8.615850e-47 |
| Msa0954910 | Msa1273230 | 0.829492 | 4.993309e-55 | -8.615850e-47 |
| Msa0956270 | Msa1273230 | 0.856788 | 2.539129e-62 | -8.615850e-47 |
| Msa0957860 | Msa1273230 | 0.834497 | 2.896072e-56 | -8.615850e-47 |
| Msa0957960 | Msa1273230 | 0.834368 | 3.121712e-56 | -8.615850e-47 |
| Msa0958550 | Msa1273230 | 0.805929 | 1.052728e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273230 | MtrunA17_Chr5g0420341 | 59.885 | 349 | 83 | 2 | 1 | 292 | 652 | 1000 | 1.65e-129 | 393 |
| Msa1273230 | MtrunA17_Chr5g0420331 | 58.621 | 348 | 87 | 2 | 2 | 292 | 653 | 1000 | 2.85e-125 | 381 |
| Msa1273230 | MtrunA17_Chr8g0339021 | 58.333 | 348 | 88 | 2 | 2 | 292 | 642 | 989 | 7.05e-125 | 381 |
| Msa1273230 | MtrunA17_Chr8g0370511 | 60.117 | 341 | 79 | 2 | 6 | 289 | 656 | 996 | 1.13e-124 | 381 |
| Msa1273230 | MtrunA17_Chr2g0296451 | 60.174 | 344 | 77 | 3 | 6 | 289 | 172 | 515 | 3.18e-123 | 364 |
| Msa1273230 | MtrunA17_Chr8g0338901 | 56.891 | 341 | 89 | 3 | 6 | 288 | 677 | 1017 | 3.94e-118 | 365 |
| Msa1273230 | MtrunA17_Chr5g0414761 | 58.358 | 341 | 85 | 3 | 6 | 289 | 442 | 782 | 3.16e-114 | 350 |
| Msa1273230 | MtrunA17_Chr8g0339031 | 57.988 | 338 | 88 | 3 | 6 | 289 | 666 | 1003 | 2.83e-111 | 346 |
| Msa1273230 | MtrunA17_Chr8g0339011 | 59.292 | 339 | 80 | 3 | 6 | 286 | 650 | 988 | 3.08e-111 | 346 |
| Msa1273230 | MtrunA17_Chr8g0338841 | 53.687 | 339 | 85 | 3 | 4 | 288 | 119 | 439 | 4.91e-110 | 328 |
| Msa1273230 | MtrunA17_Chr8g0338981 | 57.602 | 342 | 87 | 3 | 6 | 289 | 654 | 995 | 5.09e-110 | 343 |
| Msa1273230 | MtrunA17_Chr3g0085731 | 56.395 | 344 | 83 | 4 | 4 | 288 | 668 | 1003 | 3.74e-104 | 328 |
| Msa1273230 | MtrunA17_Chr8g0338881 | 55.460 | 348 | 96 | 4 | 4 | 292 | 683 | 1030 | 4.71e-102 | 323 |
| Msa1273230 | MtrunA17_Chr5g0430541 | 52.353 | 340 | 103 | 4 | 4 | 292 | 178 | 509 | 5.27e-100 | 305 |
| Msa1273230 | MtrunA17_Chr7g0223531 | 55.714 | 350 | 92 | 3 | 6 | 292 | 666 | 1015 | 7.90e-99 | 313 |
| Msa1273230 | MtrunA17_Chr8g0352221 | 58.033 | 305 | 98 | 4 | 2 | 289 | 622 | 913 | 2.09e-95 | 303 |
| Msa1273230 | MtrunA17_Chr8g0352211 | 50.000 | 294 | 108 | 5 | 2 | 288 | 664 | 925 | 7.58e-73 | 243 |
| Msa1273230 | MtrunA17_Chr4g0005871 | 40.282 | 355 | 142 | 5 | 2 | 288 | 777 | 1129 | 3.63e-68 | 229 |
| Msa1273230 | MtrunA17_Chr4g0009361 | 40.960 | 354 | 142 | 6 | 2 | 288 | 159 | 512 | 1.36e-67 | 223 |
| Msa1273230 | MtrunA17_Chr7g0257531 | 41.667 | 348 | 135 | 5 | 4 | 289 | 313 | 654 | 2.39e-67 | 222 |
| Msa1273230 | MtrunA17_Chr6g0455131 | 38.630 | 365 | 148 | 5 | 1 | 289 | 735 | 1099 | 5.07e-67 | 226 |
| Msa1273230 | MtrunA17_Chr4g0009141 | 41.499 | 347 | 140 | 7 | 4 | 288 | 1171 | 1516 | 8.73e-67 | 226 |
| Msa1273230 | MtrunA17_Chr3g0114381 | 51.293 | 232 | 54 | 3 | 115 | 289 | 2 | 231 | 8.89e-67 | 210 |
| Msa1273230 | MtrunA17_Chr4g0005851 | 38.997 | 359 | 145 | 6 | 4 | 289 | 683 | 1040 | 2.54e-66 | 224 |
| Msa1273230 | MtrunA17_Chr4g0009101 | 40.988 | 344 | 144 | 5 | 4 | 288 | 1189 | 1532 | 3.37e-65 | 221 |
| Msa1273230 | MtrunA17_Chr6g0454851 | 39.266 | 354 | 145 | 4 | 4 | 289 | 746 | 1097 | 6.94e-65 | 220 |
| Msa1273230 | MtrunA17_Chr4g0009041 | 40.057 | 352 | 144 | 6 | 2 | 288 | 1155 | 1504 | 9.93e-65 | 220 |
| Msa1273230 | MtrunA17_Chr4g0009301 | 39.773 | 352 | 145 | 5 | 2 | 288 | 1187 | 1536 | 8.87e-64 | 217 |
| Msa1273230 | MtrunA17_Chr6g0455211 | 40.000 | 345 | 143 | 5 | 4 | 288 | 698 | 1038 | 1.54e-63 | 216 |
| Msa1273230 | MtrunA17_Chr6g0454971 | 40.171 | 351 | 138 | 6 | 4 | 289 | 694 | 1037 | 1.05e-62 | 213 |
| Msa1273230 | MtrunA17_Chr6g0455251 | 40.588 | 340 | 143 | 5 | 4 | 288 | 783 | 1118 | 2.72e-62 | 213 |
| Msa1273230 | MtrunA17_Chr6g0455251 | 53.261 | 92 | 42 | 1 | 4 | 95 | 666 | 756 | 4.75e-21 | 93.2 |
| Msa1273230 | MtrunA17_Chr6g0454961 | 37.705 | 366 | 149 | 6 | 1 | 288 | 677 | 1041 | 4.42e-62 | 212 |
| Msa1273230 | MtrunA17_Chr6g0455551 | 37.396 | 361 | 150 | 6 | 4 | 288 | 729 | 1089 | 9.42e-62 | 211 |
| Msa1273230 | MtrunA17_Chr4g0009241 | 40.923 | 325 | 152 | 2 | 4 | 288 | 1196 | 1520 | 9.78e-61 | 208 |
| Msa1273230 | MtrunA17_Chr4g0009401 | 39.385 | 358 | 139 | 5 | 2 | 288 | 1148 | 1498 | 3.58e-60 | 206 |
| Msa1273230 | MtrunA17_Chr6g0454831 | 38.398 | 362 | 147 | 5 | 2 | 288 | 651 | 1011 | 9.75e-60 | 205 |
| Msa1273230 | MtrunA17_Chr4g0010711 | 36.158 | 354 | 157 | 5 | 2 | 288 | 1163 | 1514 | 5.79e-56 | 194 |
| Msa1273230 | MtrunA17_Chr8g0338931 | 79.412 | 102 | 21 | 0 | 187 | 288 | 32 | 133 | 2.44e-50 | 167 |
| Msa1273230 | MtrunA17_Chr6g0455181 | 39.298 | 285 | 117 | 5 | 2 | 235 | 44 | 323 | 2.42e-48 | 164 |
| Msa1273230 | MtrunA17_Chr6g0454871 | 55.000 | 160 | 71 | 1 | 2 | 161 | 44 | 202 | 8.37e-48 | 160 |
| Msa1273230 | MtrunA17_Chr8g0338811 | 71.698 | 106 | 30 | 0 | 2 | 107 | 3 | 108 | 9.86e-48 | 155 |
| Msa1273230 | MtrunA17_Chr8g0338801 | 60.448 | 134 | 52 | 1 | 157 | 289 | 62 | 195 | 2.03e-47 | 161 |
| Msa1273230 | MtrunA17_Chr6g0455031 | 37.222 | 360 | 148 | 8 | 4 | 289 | 671 | 1026 | 2.32e-47 | 169 |
| Msa1273230 | MtrunA17_Chr4g0005591 | 59.119 | 159 | 62 | 3 | 4 | 161 | 722 | 878 | 4.88e-47 | 169 |
| Msa1273230 | MtrunA17_Chr4g0005591 | 36.000 | 150 | 79 | 2 | 155 | 288 | 933 | 1081 | 1.73e-21 | 94.7 |
| Msa1273230 | MtrunA17_Chr6g0454951 | 36.827 | 353 | 153 | 9 | 4 | 288 | 740 | 1090 | 6.16e-47 | 168 |
| Msa1273230 | MtrunA17_Chr4g0009011 | 37.676 | 284 | 118 | 3 | 64 | 288 | 1 | 284 | 5.40e-46 | 158 |
| Msa1273230 | MtrunA17_Chr3g0085531 | 57.857 | 140 | 46 | 1 | 162 | 288 | 54 | 193 | 4.17e-45 | 155 |
| Msa1273230 | MtrunA17_Chr4g0005891 | 58.228 | 158 | 65 | 1 | 4 | 161 | 694 | 850 | 8.21e-45 | 162 |
| Msa1273230 | MtrunA17_Chr4g0005891 | 36.765 | 136 | 69 | 2 | 155 | 274 | 905 | 1039 | 3.26e-21 | 94.0 |
| Msa1273230 | MtrunA17_Chr6g0454821 | 56.329 | 158 | 68 | 1 | 4 | 161 | 694 | 850 | 1.40e-44 | 161 |
| Msa1273230 | MtrunA17_Chr6g0454821 | 39.259 | 135 | 74 | 1 | 162 | 288 | 912 | 1046 | 3.08e-23 | 99.8 |
| Msa1273230 | MtrunA17_Chr8g0343791 | 50.000 | 172 | 43 | 2 | 62 | 190 | 1 | 172 | 5.96e-44 | 147 |
| Msa1273230 | MtrunA17_Chr6g0455191 | 54.777 | 157 | 70 | 1 | 4 | 160 | 962 | 1117 | 7.34e-43 | 157 |
| Msa1273230 | MtrunA17_Chr6g0455191 | 35.664 | 143 | 75 | 2 | 162 | 288 | 1180 | 1321 | 1.38e-17 | 83.2 |
| Msa1273230 | MtrunA17_Chr4g0009171 | 63.559 | 118 | 43 | 0 | 2 | 119 | 1374 | 1491 | 1.35e-42 | 156 |
| Msa1273230 | MtrunA17_Chr4g0009171 | 50.000 | 100 | 50 | 0 | 189 | 288 | 1622 | 1721 | 1.24e-23 | 101 |
| Msa1273230 | MtrunA17_Chr4g0009171 | 52.809 | 89 | 41 | 1 | 2 | 90 | 647 | 734 | 1.34e-19 | 89.4 |
| Msa1273230 | MtrunA17_Chr7g0255681 | 50.633 | 158 | 77 | 1 | 4 | 161 | 1663 | 1819 | 5.68e-42 | 154 |
| Msa1273230 | MtrunA17_Chr7g0255681 | 37.143 | 140 | 72 | 3 | 164 | 288 | 1883 | 2021 | 1.70e-16 | 80.1 |
| Msa1273230 | MtrunA17_Chr4g0014831 | 54.375 | 160 | 72 | 1 | 2 | 161 | 437 | 595 | 1.02e-41 | 152 |
| Msa1273230 | MtrunA17_Chr8g0343781 | 83.544 | 79 | 13 | 0 | 210 | 288 | 1 | 79 | 1.47e-39 | 133 |
| Msa1273230 | MtrunA17_Chr6g0455221 | 62.069 | 116 | 44 | 0 | 4 | 119 | 659 | 774 | 1.59e-39 | 147 |
| Msa1273230 | MtrunA17_Chr6g0455221 | 41.509 | 106 | 61 | 1 | 187 | 292 | 1009 | 1113 | 8.75e-20 | 89.7 |
| Msa1273230 | MtrunA17_Chr7g0234901 | 37.500 | 280 | 159 | 5 | 2 | 280 | 169 | 433 | 2.15e-38 | 142 |
| Msa1273230 | MtrunA17_Chr7g0234901 | 39.716 | 141 | 69 | 3 | 163 | 288 | 390 | 529 | 9.84e-20 | 89.4 |
| Msa1273230 | MtrunA17_Chr4g0009211 | 53.012 | 83 | 39 | 0 | 210 | 292 | 6 | 88 | 5.93e-21 | 86.7 |
| Msa1273230 | MtrunA17_Chr3g0135511 | 41.000 | 100 | 58 | 1 | 187 | 286 | 18 | 116 | 8.84e-21 | 87.4 |
| Msa1273230 | MtrunA17_Chr3g0135571 | 41.000 | 100 | 58 | 1 | 187 | 286 | 18 | 116 | 1.69e-20 | 86.7 |
| Msa1273230 | MtrunA17_Chr3g0135541 | 41.000 | 100 | 58 | 1 | 187 | 286 | 170 | 268 | 1.49e-19 | 87.0 |
| Msa1273230 | MtrunA17_Chr4g0014821 | 42.157 | 102 | 57 | 2 | 187 | 288 | 14 | 113 | 5.31e-19 | 82.8 |
| Msa1273230 | MtrunA17_Chr6g0454911 | 39.806 | 103 | 61 | 1 | 187 | 289 | 131 | 232 | 2.05e-18 | 82.8 |
| Msa1273230 | MtrunA17_Chr4g0008981 | 48.101 | 79 | 41 | 0 | 210 | 288 | 6 | 84 | 1.31e-17 | 78.2 |
| Msa1273230 | MtrunA17_Chr6g0454861 | 42.105 | 76 | 44 | 0 | 214 | 289 | 1 | 76 | 1.63e-14 | 68.6 |
| Msa1273230 | MtrunA17_Chr4g0005601 | 59.649 | 57 | 23 | 0 | 2 | 58 | 101 | 157 | 6.20e-13 | 65.9 |
| Msa1273230 | MtrunA17_Chr8g0363851 | 41.111 | 90 | 53 | 0 | 6 | 95 | 499 | 588 | 2.18e-11 | 64.7 |
| Msa1273230 | MtrunA17_Chr7g0256881 | 37.195 | 164 | 88 | 7 | 6 | 160 | 724 | 881 | 3.38e-11 | 63.9 |
| Msa1273230 | MtrunA17_Chr8g0363891 | 34.483 | 174 | 91 | 4 | 6 | 179 | 34 | 184 | 4.40e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273230 | AT5G36930.3 | 39.855 | 138 | 81 | 2 | 1 | 137 | 651 | 787 | 5.15e-18 | 84.7 |
| Msa1273230 | AT5G36930.2 | 39.855 | 138 | 81 | 2 | 1 | 137 | 654 | 790 | 5.26e-18 | 84.7 |
| Msa1273230 | AT5G36930.4 | 39.855 | 138 | 81 | 2 | 1 | 137 | 651 | 787 | 5.46e-18 | 84.7 |
| Msa1273230 | AT5G36930.1 | 39.855 | 138 | 81 | 2 | 1 | 137 | 651 | 787 | 5.46e-18 | 84.7 |
| Msa1273230 | AT1G27170.1 | 38.889 | 90 | 55 | 0 | 6 | 95 | 706 | 795 | 7.50e-11 | 63.2 |
| Msa1273230 | AT1G27170.2 | 38.889 | 90 | 55 | 0 | 6 | 95 | 706 | 795 | 9.00e-11 | 63.2 |
Find 62 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCAACATCTGAAAATA+TGG | 0.157765 | 8_3:+6954664 | Msa1273230:CDS |
| TGGAAAACTCTTATACTTTC+TGG | 0.178208 | 8_3:+6953555 | Msa1273230:CDS |
| AGAAGTTCCTTCACCTTTAT+AGG | 0.217046 | 8_3:-6954576 | None:intergenic |
| TCTCAAAACTTAGAAGTGTT+TGG | 0.291479 | 8_3:+6953889 | Msa1273230:CDS |
| GGATGCAGAGAGTAATAATA+TGG | 0.305324 | 8_3:+6953839 | Msa1273230:CDS |
| TTTCAGTCTTAGTATTGAAT+AGG | 0.305381 | 8_3:-6953670 | None:intergenic |
| CTACACCATATTTCTCCATT+TGG | 0.320932 | 8_3:+6953789 | Msa1273230:CDS |
| TTCCTTCTCTCATTTGGTCT+TGG | 0.326713 | 8_3:+6953745 | Msa1273230:CDS |
| CTCAAAACTTAGAAGTGTTT+GGG | 0.326887 | 8_3:+6953890 | Msa1273230:CDS |
| GTCTCGCTTGTATATCTTGA+TGG | 0.329919 | 8_3:-6954735 | None:intergenic |
| GTCATTGTCTTTAGTGTCCT+TGG | 0.333928 | 8_3:+6953818 | Msa1273230:CDS |
| TTCAGTCTTAGTATTGAATA+GGG | 0.349768 | 8_3:-6953669 | None:intergenic |
| ATCTCTTGGTTAGCCTATAA+AGG | 0.367105 | 8_3:+6954563 | Msa1273230:CDS |
| ATAGATCTCCCTTGGGAGAT+TGG | 0.371384 | 8_3:-6953520 | None:intergenic |
| TGCCTCCAAATGGAGAAATA+TGG | 0.397792 | 8_3:-6953794 | None:intergenic |
| ATGGGAGCTGAATGTCTTAC+CGG | 0.400499 | 8_3:+6954683 | Msa1273230:CDS |
| TCTACTTCTGTTGAATTTCA+AGG | 0.407907 | 8_3:+6953482 | Msa1273230:CDS |
| CAACTTGTCATCGACACTCT+TGG | 0.417571 | 8_3:+6954068 | Msa1273230:CDS |
| TTCCATTGATAGATCTCCCT+TGG | 0.429722 | 8_3:-6953528 | None:intergenic |
| AGATCTATCAATGGAAAACT+TGG | 0.439193 | 8_3:+6953535 | Msa1273230:CDS |
| TTCTTGGTTAGCCTATCTCT+TGG | 0.449377 | 8_3:+6954549 | Msa1273230:intron |
| CACCATATTTCTCCATTTGG+AGG | 0.457862 | 8_3:+6953792 | Msa1273230:CDS |
| GACAATGACATGCCTCCAAA+TGG | 0.466574 | 8_3:-6953804 | None:intergenic |
| GATAGTAATTGTTGCATGAA+AGG | 0.468935 | 8_3:+6954620 | Msa1273230:CDS |
| TCATCAACATCTGAAAATAT+GGG | 0.471861 | 8_3:+6954665 | Msa1273230:CDS |
| TGGGCGTGGATTGATTGTTA+AGG | 0.471862 | 8_3:+6954844 | Msa1273230:CDS |
| TTATAGGCTAACCAAGAGAT+AGG | 0.479778 | 8_3:-6954560 | None:intergenic |
| TCCATTGATAGATCTCCCTT+GGG | 0.487491 | 8_3:-6953527 | None:intergenic |
| GAATTCTCCATGTTTGTATG+AGG | 0.497941 | 8_3:+6953431 | Msa1273230:CDS |
| GGATTGATTGTTAAGGTCAC+AGG | 0.502850 | 8_3:+6954851 | Msa1273230:CDS |
| ATACTAAGACTGAAAAGCAT+TGG | 0.503832 | 8_3:+6953678 | Msa1273230:CDS |
| TATGAGGTACACCGGTCCAT+TGG | 0.506159 | 8_3:+6953447 | Msa1273230:CDS |
| AAATGGAGAAATATGGTGTA+GGG | 0.527281 | 8_3:-6953787 | None:intergenic |
| ATATCCTTGTGTGTATATGA+AGG | 0.528332 | 8_3:+6953705 | Msa1273230:CDS |
| TTTGGCAATCAGTGTTGTCA+AGG | 0.534597 | 8_3:-6953625 | None:intergenic |
| ATGCAACAATTACTATCCTC+AGG | 0.537272 | 8_3:-6954614 | None:intergenic |
| GATGCAGAGAGTAATAATAT+GGG | 0.543681 | 8_3:+6953840 | Msa1273230:CDS |
| TCCTAAGGTCTCCAATGGAC+CGG | 0.546085 | 8_3:-6953458 | None:intergenic |
| TTGTTCAAAGATTAACAAGT+TGG | 0.547289 | 8_3:+6953578 | Msa1273230:CDS |
| TTTAATGATGAAGATTGGAA+AGG | 0.547967 | 8_3:+6954770 | Msa1273230:CDS |
| TTAACATCAAATCTAGAGAC+TGG | 0.549985 | 8_3:+6954794 | Msa1273230:CDS |
| CAAATGGAGAAATATGGTGT+AGG | 0.550036 | 8_3:-6953788 | None:intergenic |
| GGAAGAAGACATAGTGCAGA+TGG | 0.560368 | 8_3:+6953599 | Msa1273230:CDS |
| TCCCAAGGGAGATCTATCAA+TGG | 0.564251 | 8_3:+6953526 | Msa1273230:CDS |
| TAGATTCCTAAGGTCTCCAA+TGG | 0.573670 | 8_3:-6953463 | None:intergenic |
| TTCCAAGACCAAATGAGAGA+AGG | 0.582080 | 8_3:-6953747 | None:intergenic |
| ATTATTACTCTCTGCATCCA+AGG | 0.587992 | 8_3:-6953835 | None:intergenic |
| TCAACAGAAGTAGATTCCTA+AGG | 0.588100 | 8_3:-6953473 | None:intergenic |
| ACCGGTCCATTGGAGACCTT+AGG | 0.589816 | 8_3:+6953457 | Msa1273230:CDS |
| CGGTGTACCTCATACAAACA+TGG | 0.598826 | 8_3:-6953438 | None:intergenic |
| TGGTTAGCCTATAAAGGTGA+AGG | 0.598830 | 8_3:+6954569 | Msa1273230:CDS |
| CAAGTCTTACCAATCTCCCA+AGG | 0.601218 | 8_3:+6953511 | Msa1273230:CDS |
| CAAGAGTGTCGATGACAAGT+TGG | 0.609185 | 8_3:-6954067 | None:intergenic |
| TGGTGTAGGGAATTTACCGT+TGG | 0.620543 | 8_3:-6953774 | None:intergenic |
| TTGGTCTTGGAAGTCACCAA+CGG | 0.648334 | 8_3:+6953758 | Msa1273230:CDS |
| GTAATTAATAATCAAGACAC+CGG | 0.652312 | 8_3:-6954702 | None:intergenic |
| CATGTTTGTATGAGGTACAC+CGG | 0.654584 | 8_3:+6953439 | Msa1273230:CDS |
| TCTTGGCAAGAACATATCAC+AGG | 0.656511 | 8_3:+6954085 | Msa1273230:CDS |
| TCTAGAGACTGGTGACAGCG+TGG | 0.665473 | 8_3:+6954805 | Msa1273230:CDS |
| CAAGATATACAAGCGAGACA+CGG | 0.677627 | 8_3:+6954739 | Msa1273230:CDS |
| TAATCCTTCATATACACACA+AGG | 0.696950 | 8_3:-6953709 | None:intergenic |
| AAGTCTTACCAATCTCCCAA+GGG | 0.699541 | 8_3:+6953512 | Msa1273230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTATAGATGTATTTT+TGG | - | chr8_3:6953646-6953665 | None:intergenic | 15.0% |
| !! | TATTATTAATTAAGAGAACA+TGG | + | chr8_3:6954133-6954152 | Msa1273230:intron | 15.0% |
| !!! | TTTTAAGTAAAAAATGCAAA+TGG | - | chr8_3:6954168-6954187 | None:intergenic | 15.0% |
| !! | TAATTATTATGCTATTAAAC+TGG | - | chr8_3:6954436-6954455 | None:intergenic | 15.0% |
| !! | AATTACATAATTAACTAATC+AGG | + | chr8_3:6954459-6954478 | Msa1273230:intron | 15.0% |
| !!! | TTCTTTTATAGATGTATTTT+TGG | - | chr8_3:6953646-6953665 | None:intergenic | 15.0% |
| !! | TATTATTAATTAAGAGAACA+TGG | + | chr8_3:6954133-6954152 | Msa1273230:intron | 15.0% |
| !!! | TTTTAAGTAAAAAATGCAAA+TGG | - | chr8_3:6954168-6954187 | None:intergenic | 15.0% |
| !! | TAATTATTATGCTATTAAAC+TGG | - | chr8_3:6954436-6954455 | None:intergenic | 15.0% |
| !! | AATTACATAATTAACTAATC+AGG | + | chr8_3:6954459-6954478 | Msa1273230:intron | 15.0% |
| ! | TTGTTCAAAGATTAACAAGT+TGG | + | chr8_3:6953578-6953597 | Msa1273230:CDS | 25.0% |
| !! | TTCAGTCTTAGTATTGAATA+GGG | - | chr8_3:6953672-6953691 | None:intergenic | 25.0% |
| !! | TTTCAGTCTTAGTATTGAAT+AGG | - | chr8_3:6953673-6953692 | None:intergenic | 25.0% |
| !! | TAAGAAAGATTTGAGATTTG+TGG | - | chr8_3:6954017-6954036 | None:intergenic | 25.0% |
| ! | GAATGTAGAAAAACTGAAAA+AGG | - | chr8_3:6954268-6954287 | None:intergenic | 25.0% |
| ! | GTATAAGATGAAGATAAACT+AGG | - | chr8_3:6954352-6954371 | None:intergenic | 25.0% |
| ! | ATGTTTAAGAAATAACAGCT+CGG | - | chr8_3:6954374-6954393 | None:intergenic | 25.0% |
| ! | GTGTCAATCAAAATTCTAAA+AGG | - | chr8_3:6954402-6954421 | None:intergenic | 25.0% |
| ! | ACTAATTGTTCTAGTAACTT+TGG | + | chr8_3:6954505-6954524 | Msa1273230:intron | 25.0% |
| ! | TTCATCAACATCTGAAAATA+TGG | + | chr8_3:6954664-6954683 | Msa1273230:CDS | 25.0% |
| ! | TCATCAACATCTGAAAATAT+GGG | + | chr8_3:6954665-6954684 | Msa1273230:CDS | 25.0% |
| ! | GTAATTAATAATCAAGACAC+CGG | - | chr8_3:6954705-6954724 | None:intergenic | 25.0% |
| !! | TGTCTTTTAATGATGAAGAT+TGG | + | chr8_3:6954765-6954784 | Msa1273230:CDS | 25.0% |
| ! | TTTAATGATGAAGATTGGAA+AGG | + | chr8_3:6954770-6954789 | Msa1273230:CDS | 25.0% |
| ! | TTGTTCAAAGATTAACAAGT+TGG | + | chr8_3:6953578-6953597 | Msa1273230:CDS | 25.0% |
| !! | TTCAGTCTTAGTATTGAATA+GGG | - | chr8_3:6953672-6953691 | None:intergenic | 25.0% |
| !! | TTTCAGTCTTAGTATTGAAT+AGG | - | chr8_3:6953673-6953692 | None:intergenic | 25.0% |
| !! | TAAGAAAGATTTGAGATTTG+TGG | - | chr8_3:6954017-6954036 | None:intergenic | 25.0% |
| ! | GAATGTAGAAAAACTGAAAA+AGG | - | chr8_3:6954268-6954287 | None:intergenic | 25.0% |
| ! | GTATAAGATGAAGATAAACT+AGG | - | chr8_3:6954352-6954371 | None:intergenic | 25.0% |
| ! | ATGTTTAAGAAATAACAGCT+CGG | - | chr8_3:6954374-6954393 | None:intergenic | 25.0% |
| ! | GTGTCAATCAAAATTCTAAA+AGG | - | chr8_3:6954402-6954421 | None:intergenic | 25.0% |
| ! | ACTAATTGTTCTAGTAACTT+TGG | + | chr8_3:6954505-6954524 | Msa1273230:intron | 25.0% |
| ! | TTCATCAACATCTGAAAATA+TGG | + | chr8_3:6954664-6954683 | Msa1273230:CDS | 25.0% |
| ! | TCATCAACATCTGAAAATAT+GGG | + | chr8_3:6954665-6954684 | Msa1273230:CDS | 25.0% |
| ! | GTAATTAATAATCAAGACAC+CGG | - | chr8_3:6954705-6954724 | None:intergenic | 25.0% |
| !! | TGTCTTTTAATGATGAAGAT+TGG | + | chr8_3:6954765-6954784 | Msa1273230:CDS | 25.0% |
| ! | TTTAATGATGAAGATTGGAA+AGG | + | chr8_3:6954770-6954789 | Msa1273230:CDS | 25.0% |
| TCTACTTCTGTTGAATTTCA+AGG | + | chr8_3:6953482-6953501 | Msa1273230:CDS | 30.0% | |
| AGATCTATCAATGGAAAACT+TGG | + | chr8_3:6953535-6953554 | Msa1273230:CDS | 30.0% | |
| TGGAAAACTCTTATACTTTC+TGG | + | chr8_3:6953555-6953574 | Msa1273230:CDS | 30.0% | |
| ! | ATACTAAGACTGAAAAGCAT+TGG | + | chr8_3:6953678-6953697 | Msa1273230:CDS | 30.0% |
| ATATCCTTGTGTGTATATGA+AGG | + | chr8_3:6953705-6953724 | Msa1273230:CDS | 30.0% | |
| TAATCCTTCATATACACACA+AGG | - | chr8_3:6953712-6953731 | None:intergenic | 30.0% | |
| ! | ATGTTTTTCCTTCTCTCATT+TGG | + | chr8_3:6953739-6953758 | Msa1273230:CDS | 30.0% |
| AAATGGAGAAATATGGTGTA+GGG | - | chr8_3:6953790-6953809 | None:intergenic | 30.0% | |
| GATGCAGAGAGTAATAATAT+GGG | + | chr8_3:6953840-6953859 | Msa1273230:CDS | 30.0% | |
| !! | TCTCAAAACTTAGAAGTGTT+TGG | + | chr8_3:6953889-6953908 | Msa1273230:CDS | 30.0% |
| !! | CTCAAAACTTAGAAGTGTTT+GGG | + | chr8_3:6953890-6953909 | Msa1273230:CDS | 30.0% |
| !!! | ATGTGATGTTGTTTTCAACT+CGG | - | chr8_3:6953991-6954010 | None:intergenic | 30.0% |
| !! | TCTTAGAGATCACTTTTGAT+TGG | + | chr8_3:6954032-6954051 | Msa1273230:intron | 30.0% |
| !! | AGATCACTTTTGATTGGAAT+GGG | + | chr8_3:6954038-6954057 | Msa1273230:CDS | 30.0% |
| ! | AGTCTAAACTTAGGGATTTT+TGG | - | chr8_3:6954192-6954211 | None:intergenic | 30.0% |
| ATGTCACAAGTCTAAACTTA+GGG | - | chr8_3:6954200-6954219 | None:intergenic | 30.0% | |
| TATGTCACAAGTCTAAACTT+AGG | - | chr8_3:6954201-6954220 | None:intergenic | 30.0% | |
| GATAGTAATTGTTGCATGAA+AGG | + | chr8_3:6954620-6954639 | Msa1273230:CDS | 30.0% | |
| TTAACATCAAATCTAGAGAC+TGG | + | chr8_3:6954794-6954813 | Msa1273230:CDS | 30.0% | |
| ! | TGGAGAATTTTGTAGCTTTT+GGG | + | chr8_3:6954825-6954844 | Msa1273230:CDS | 30.0% |
| TCTACTTCTGTTGAATTTCA+AGG | + | chr8_3:6953482-6953501 | Msa1273230:CDS | 30.0% | |
| AGATCTATCAATGGAAAACT+TGG | + | chr8_3:6953535-6953554 | Msa1273230:CDS | 30.0% | |
| TGGAAAACTCTTATACTTTC+TGG | + | chr8_3:6953555-6953574 | Msa1273230:CDS | 30.0% | |
| ! | ATACTAAGACTGAAAAGCAT+TGG | + | chr8_3:6953678-6953697 | Msa1273230:CDS | 30.0% |
| ATATCCTTGTGTGTATATGA+AGG | + | chr8_3:6953705-6953724 | Msa1273230:CDS | 30.0% | |
| TAATCCTTCATATACACACA+AGG | - | chr8_3:6953712-6953731 | None:intergenic | 30.0% | |
| ! | ATGTTTTTCCTTCTCTCATT+TGG | + | chr8_3:6953739-6953758 | Msa1273230:CDS | 30.0% |
| AAATGGAGAAATATGGTGTA+GGG | - | chr8_3:6953790-6953809 | None:intergenic | 30.0% | |
| GATGCAGAGAGTAATAATAT+GGG | + | chr8_3:6953840-6953859 | Msa1273230:CDS | 30.0% | |
| !! | TCTCAAAACTTAGAAGTGTT+TGG | + | chr8_3:6953889-6953908 | Msa1273230:CDS | 30.0% |
| !! | CTCAAAACTTAGAAGTGTTT+GGG | + | chr8_3:6953890-6953909 | Msa1273230:CDS | 30.0% |
| !!! | ATGTGATGTTGTTTTCAACT+CGG | - | chr8_3:6953991-6954010 | None:intergenic | 30.0% |
| !! | TCTTAGAGATCACTTTTGAT+TGG | + | chr8_3:6954032-6954051 | Msa1273230:intron | 30.0% |
| !! | AGATCACTTTTGATTGGAAT+GGG | + | chr8_3:6954038-6954057 | Msa1273230:CDS | 30.0% |
| ! | AGTCTAAACTTAGGGATTTT+TGG | - | chr8_3:6954192-6954211 | None:intergenic | 30.0% |
| ATGTCACAAGTCTAAACTTA+GGG | - | chr8_3:6954200-6954219 | None:intergenic | 30.0% | |
| TATGTCACAAGTCTAAACTT+AGG | - | chr8_3:6954201-6954220 | None:intergenic | 30.0% | |
| GATAGTAATTGTTGCATGAA+AGG | + | chr8_3:6954620-6954639 | Msa1273230:CDS | 30.0% | |
| TTAACATCAAATCTAGAGAC+TGG | + | chr8_3:6954794-6954813 | Msa1273230:CDS | 30.0% | |
| ! | TGGAGAATTTTGTAGCTTTT+GGG | + | chr8_3:6954825-6954844 | Msa1273230:CDS | 30.0% |
| GAATTCTCCATGTTTGTATG+AGG | + | chr8_3:6953431-6953450 | Msa1273230:CDS | 35.0% | |
| TCAACAGAAGTAGATTCCTA+AGG | - | chr8_3:6953476-6953495 | None:intergenic | 35.0% | |
| CAAATGGAGAAATATGGTGT+AGG | - | chr8_3:6953791-6953810 | None:intergenic | 35.0% | |
| CTACACCATATTTCTCCATT+TGG | + | chr8_3:6953789-6953808 | Msa1273230:CDS | 35.0% | |
| ATTATTACTCTCTGCATCCA+AGG | - | chr8_3:6953838-6953857 | None:intergenic | 35.0% | |
| GGATGCAGAGAGTAATAATA+TGG | + | chr8_3:6953839-6953858 | Msa1273230:CDS | 35.0% | |
| GAGTTGAAAACAACATCACA+TGG | + | chr8_3:6953990-6954009 | Msa1273230:intron | 35.0% | |
| !! | GAGATCACTTTTGATTGGAA+TGG | + | chr8_3:6954037-6954056 | Msa1273230:intron | 35.0% |
| !! | GATCACTTTTGATTGGAATG+GGG | + | chr8_3:6954039-6954058 | Msa1273230:CDS | 35.0% |
| ! | TCATACCTTTTTCCAGACTA+TGG | + | chr8_3:6954304-6954323 | Msa1273230:intron | 35.0% |
| AAAAGAAAACAGCCATAGTC+TGG | - | chr8_3:6954319-6954338 | None:intergenic | 35.0% | |
| CAAGAAGGATAATTGTCACT+AGG | - | chr8_3:6954535-6954554 | None:intergenic | 35.0% | |
| CTAGTGACAATTATCCTTCT+TGG | + | chr8_3:6954533-6954552 | Msa1273230:intron | 35.0% | |
| TTATAGGCTAACCAAGAGAT+AGG | - | chr8_3:6954563-6954582 | None:intergenic | 35.0% | |
| !! | ATCTCTTGGTTAGCCTATAA+AGG | + | chr8_3:6954563-6954582 | Msa1273230:CDS | 35.0% |
| AGAAGTTCCTTCACCTTTAT+AGG | - | chr8_3:6954579-6954598 | None:intergenic | 35.0% | |
| !!! | TGTACTTTTTCAAGTTCCTG+AGG | + | chr8_3:6954598-6954617 | Msa1273230:CDS | 35.0% |
| ATGCAACAATTACTATCCTC+AGG | - | chr8_3:6954617-6954636 | None:intergenic | 35.0% | |
| ! | GTGGAGAATTTTGTAGCTTT+TGG | + | chr8_3:6954824-6954843 | Msa1273230:CDS | 35.0% |
| GAATTCTCCATGTTTGTATG+AGG | + | chr8_3:6953431-6953450 | Msa1273230:CDS | 35.0% | |
| TCAACAGAAGTAGATTCCTA+AGG | - | chr8_3:6953476-6953495 | None:intergenic | 35.0% | |
| CAAATGGAGAAATATGGTGT+AGG | - | chr8_3:6953791-6953810 | None:intergenic | 35.0% | |
| CTACACCATATTTCTCCATT+TGG | + | chr8_3:6953789-6953808 | Msa1273230:CDS | 35.0% | |
| ATTATTACTCTCTGCATCCA+AGG | - | chr8_3:6953838-6953857 | None:intergenic | 35.0% | |
| GGATGCAGAGAGTAATAATA+TGG | + | chr8_3:6953839-6953858 | Msa1273230:CDS | 35.0% | |
| GAGTTGAAAACAACATCACA+TGG | + | chr8_3:6953990-6954009 | Msa1273230:intron | 35.0% | |
| !! | GAGATCACTTTTGATTGGAA+TGG | + | chr8_3:6954037-6954056 | Msa1273230:intron | 35.0% |
| !! | GATCACTTTTGATTGGAATG+GGG | + | chr8_3:6954039-6954058 | Msa1273230:CDS | 35.0% |
| ! | TCATACCTTTTTCCAGACTA+TGG | + | chr8_3:6954304-6954323 | Msa1273230:intron | 35.0% |
| AAAAGAAAACAGCCATAGTC+TGG | - | chr8_3:6954319-6954338 | None:intergenic | 35.0% | |
| CAAGAAGGATAATTGTCACT+AGG | - | chr8_3:6954535-6954554 | None:intergenic | 35.0% | |
| CTAGTGACAATTATCCTTCT+TGG | + | chr8_3:6954533-6954552 | Msa1273230:intron | 35.0% | |
| TTATAGGCTAACCAAGAGAT+AGG | - | chr8_3:6954563-6954582 | None:intergenic | 35.0% | |
| !! | ATCTCTTGGTTAGCCTATAA+AGG | + | chr8_3:6954563-6954582 | Msa1273230:CDS | 35.0% |
| AGAAGTTCCTTCACCTTTAT+AGG | - | chr8_3:6954579-6954598 | None:intergenic | 35.0% | |
| !!! | TGTACTTTTTCAAGTTCCTG+AGG | + | chr8_3:6954598-6954617 | Msa1273230:CDS | 35.0% |
| ATGCAACAATTACTATCCTC+AGG | - | chr8_3:6954617-6954636 | None:intergenic | 35.0% | |
| ! | GTGGAGAATTTTGTAGCTTT+TGG | + | chr8_3:6954824-6954843 | Msa1273230:CDS | 35.0% |
| CATGTTTGTATGAGGTACAC+CGG | + | chr8_3:6953439-6953458 | Msa1273230:CDS | 40.0% | |
| TAGATTCCTAAGGTCTCCAA+TGG | - | chr8_3:6953466-6953485 | None:intergenic | 40.0% | |
| AAGTCTTACCAATCTCCCAA+GGG | + | chr8_3:6953512-6953531 | Msa1273230:CDS | 40.0% | |
| TCCATTGATAGATCTCCCTT+GGG | - | chr8_3:6953530-6953549 | None:intergenic | 40.0% | |
| TTCCATTGATAGATCTCCCT+TGG | - | chr8_3:6953531-6953550 | None:intergenic | 40.0% | |
| TTTGGCAATCAGTGTTGTCA+AGG | - | chr8_3:6953628-6953647 | None:intergenic | 40.0% | |
| TTCCTTCTCTCATTTGGTCT+TGG | + | chr8_3:6953745-6953764 | Msa1273230:CDS | 40.0% | |
| TTCCAAGACCAAATGAGAGA+AGG | - | chr8_3:6953750-6953769 | None:intergenic | 40.0% | |
| CACCATATTTCTCCATTTGG+AGG | + | chr8_3:6953792-6953811 | Msa1273230:CDS | 40.0% | |
| TGCCTCCAAATGGAGAAATA+TGG | - | chr8_3:6953797-6953816 | None:intergenic | 40.0% | |
| GTCATTGTCTTTAGTGTCCT+TGG | + | chr8_3:6953818-6953837 | Msa1273230:CDS | 40.0% | |
| GAGTTAGTTGAATCTCTGAG+TGG | - | chr8_3:6953923-6953942 | None:intergenic | 40.0% | |
| TCTTGGCAAGAACATATCAC+AGG | + | chr8_3:6954085-6954104 | Msa1273230:CDS | 40.0% | |
| AACAGCCATAGTCTGGAAAA+AGG | - | chr8_3:6954312-6954331 | None:intergenic | 40.0% | |
| AATCAGGTGCTCATGATACA+TGG | + | chr8_3:6954475-6954494 | Msa1273230:intron | 40.0% | |
| AAGAGATAGGCTAACCAAGA+AGG | - | chr8_3:6954550-6954569 | None:intergenic | 40.0% | |
| !! | TTCTTGGTTAGCCTATCTCT+TGG | + | chr8_3:6954549-6954568 | Msa1273230:intron | 40.0% |
| !! | TGGTTAGCCTATAAAGGTGA+AGG | + | chr8_3:6954569-6954588 | Msa1273230:CDS | 40.0% |
| GTCTCGCTTGTATATCTTGA+TGG | - | chr8_3:6954738-6954757 | None:intergenic | 40.0% | |
| CAAGATATACAAGCGAGACA+CGG | + | chr8_3:6954739-6954758 | Msa1273230:CDS | 40.0% | |
| ! | AATTTTGTAGCTTTTGGGCG+TGG | + | chr8_3:6954830-6954849 | Msa1273230:CDS | 40.0% |
| GGATTGATTGTTAAGGTCAC+AGG | + | chr8_3:6954851-6954870 | Msa1273230:CDS | 40.0% | |
| CATGTTTGTATGAGGTACAC+CGG | + | chr8_3:6953439-6953458 | Msa1273230:CDS | 40.0% | |
| TAGATTCCTAAGGTCTCCAA+TGG | - | chr8_3:6953466-6953485 | None:intergenic | 40.0% | |
| AAGTCTTACCAATCTCCCAA+GGG | + | chr8_3:6953512-6953531 | Msa1273230:CDS | 40.0% | |
| TCCATTGATAGATCTCCCTT+GGG | - | chr8_3:6953530-6953549 | None:intergenic | 40.0% | |
| TTCCATTGATAGATCTCCCT+TGG | - | chr8_3:6953531-6953550 | None:intergenic | 40.0% | |
| TTTGGCAATCAGTGTTGTCA+AGG | - | chr8_3:6953628-6953647 | None:intergenic | 40.0% | |
| TTCCTTCTCTCATTTGGTCT+TGG | + | chr8_3:6953745-6953764 | Msa1273230:CDS | 40.0% | |
| TTCCAAGACCAAATGAGAGA+AGG | - | chr8_3:6953750-6953769 | None:intergenic | 40.0% | |
| CACCATATTTCTCCATTTGG+AGG | + | chr8_3:6953792-6953811 | Msa1273230:CDS | 40.0% | |
| TGCCTCCAAATGGAGAAATA+TGG | - | chr8_3:6953797-6953816 | None:intergenic | 40.0% | |
| GTCATTGTCTTTAGTGTCCT+TGG | + | chr8_3:6953818-6953837 | Msa1273230:CDS | 40.0% | |
| GAGTTAGTTGAATCTCTGAG+TGG | - | chr8_3:6953923-6953942 | None:intergenic | 40.0% | |
| TCTTGGCAAGAACATATCAC+AGG | + | chr8_3:6954085-6954104 | Msa1273230:CDS | 40.0% | |
| AACAGCCATAGTCTGGAAAA+AGG | - | chr8_3:6954312-6954331 | None:intergenic | 40.0% | |
| AATCAGGTGCTCATGATACA+TGG | + | chr8_3:6954475-6954494 | Msa1273230:intron | 40.0% | |
| AAGAGATAGGCTAACCAAGA+AGG | - | chr8_3:6954550-6954569 | None:intergenic | 40.0% | |
| !! | TTCTTGGTTAGCCTATCTCT+TGG | + | chr8_3:6954549-6954568 | Msa1273230:intron | 40.0% |
| !! | TGGTTAGCCTATAAAGGTGA+AGG | + | chr8_3:6954569-6954588 | Msa1273230:CDS | 40.0% |
| GTCTCGCTTGTATATCTTGA+TGG | - | chr8_3:6954738-6954757 | None:intergenic | 40.0% | |
| CAAGATATACAAGCGAGACA+CGG | + | chr8_3:6954739-6954758 | Msa1273230:CDS | 40.0% | |
| ! | AATTTTGTAGCTTTTGGGCG+TGG | + | chr8_3:6954830-6954849 | Msa1273230:CDS | 40.0% |
| GGATTGATTGTTAAGGTCAC+AGG | + | chr8_3:6954851-6954870 | Msa1273230:CDS | 40.0% | |
| CGGTGTACCTCATACAAACA+TGG | - | chr8_3:6953441-6953460 | None:intergenic | 45.0% | |
| CAAGTCTTACCAATCTCCCA+AGG | + | chr8_3:6953511-6953530 | Msa1273230:CDS | 45.0% | |
| ATAGATCTCCCTTGGGAGAT+TGG | - | chr8_3:6953523-6953542 | None:intergenic | 45.0% | |
| TCCCAAGGGAGATCTATCAA+TGG | + | chr8_3:6953526-6953545 | Msa1273230:CDS | 45.0% | |
| GGAAGAAGACATAGTGCAGA+TGG | + | chr8_3:6953599-6953618 | Msa1273230:CDS | 45.0% | |
| !! | TTGGTCTTGGAAGTCACCAA+CGG | + | chr8_3:6953758-6953777 | Msa1273230:CDS | 45.0% |
| TGGTGTAGGGAATTTACCGT+TGG | - | chr8_3:6953777-6953796 | None:intergenic | 45.0% | |
| GACAATGACATGCCTCCAAA+TGG | - | chr8_3:6953807-6953826 | None:intergenic | 45.0% | |
| !! | CAAGAGTGTCGATGACAAGT+TGG | - | chr8_3:6954070-6954089 | None:intergenic | 45.0% |
| CAACTTGTCATCGACACTCT+TGG | + | chr8_3:6954068-6954087 | Msa1273230:CDS | 45.0% | |
| ATGGGAGCTGAATGTCTTAC+CGG | + | chr8_3:6954683-6954702 | Msa1273230:CDS | 45.0% | |
| ! | TGGGCGTGGATTGATTGTTA+AGG | + | chr8_3:6954844-6954863 | Msa1273230:CDS | 45.0% |
| CGGTGTACCTCATACAAACA+TGG | - | chr8_3:6953441-6953460 | None:intergenic | 45.0% | |
| CAAGTCTTACCAATCTCCCA+AGG | + | chr8_3:6953511-6953530 | Msa1273230:CDS | 45.0% | |
| ATAGATCTCCCTTGGGAGAT+TGG | - | chr8_3:6953523-6953542 | None:intergenic | 45.0% | |
| TCCCAAGGGAGATCTATCAA+TGG | + | chr8_3:6953526-6953545 | Msa1273230:CDS | 45.0% | |
| GGAAGAAGACATAGTGCAGA+TGG | + | chr8_3:6953599-6953618 | Msa1273230:CDS | 45.0% | |
| !! | TTGGTCTTGGAAGTCACCAA+CGG | + | chr8_3:6953758-6953777 | Msa1273230:CDS | 45.0% |
| TGGTGTAGGGAATTTACCGT+TGG | - | chr8_3:6953777-6953796 | None:intergenic | 45.0% | |
| GACAATGACATGCCTCCAAA+TGG | - | chr8_3:6953807-6953826 | None:intergenic | 45.0% | |
| !! | CAAGAGTGTCGATGACAAGT+TGG | - | chr8_3:6954070-6954089 | None:intergenic | 45.0% |
| CAACTTGTCATCGACACTCT+TGG | + | chr8_3:6954068-6954087 | Msa1273230:CDS | 45.0% | |
| ATGGGAGCTGAATGTCTTAC+CGG | + | chr8_3:6954683-6954702 | Msa1273230:CDS | 45.0% | |
| ! | TGGGCGTGGATTGATTGTTA+AGG | + | chr8_3:6954844-6954863 | Msa1273230:CDS | 45.0% |
| !! | TAATTAATAATAATAAAGTA+AGG | - | chr8_3:6954125-6954144 | None:intergenic | 5.0% |
| !! | TAATTAATAATAATAAAGTA+AGG | - | chr8_3:6954125-6954144 | None:intergenic | 5.0% |
| TATGAGGTACACCGGTCCAT+TGG | + | chr8_3:6953447-6953466 | Msa1273230:CDS | 50.0% | |
| TCCTAAGGTCTCCAATGGAC+CGG | - | chr8_3:6953461-6953480 | None:intergenic | 50.0% | |
| TATGAGGTACACCGGTCCAT+TGG | + | chr8_3:6953447-6953466 | Msa1273230:CDS | 50.0% | |
| TCCTAAGGTCTCCAATGGAC+CGG | - | chr8_3:6953461-6953480 | None:intergenic | 50.0% | |
| ACCGGTCCATTGGAGACCTT+AGG | + | chr8_3:6953457-6953476 | Msa1273230:CDS | 55.0% | |
| TCTAGAGACTGGTGACAGCG+TGG | + | chr8_3:6954805-6954824 | Msa1273230:CDS | 55.0% | |
| ACCGGTCCATTGGAGACCTT+AGG | + | chr8_3:6953457-6953476 | Msa1273230:CDS | 55.0% | |
| TCTAGAGACTGGTGACAGCG+TGG | + | chr8_3:6954805-6954824 | Msa1273230:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 6953429 | 6954892 | 6953429 | ID=Msa1273230;Name=Msa1273230 |
| chr8_3 | mRNA | 6953429 | 6954892 | 6953429 | ID=Msa1273230-mRNA-1;Parent=Msa1273230;Name=Msa1273230-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|3|0|294 |
| chr8_3 | exon | 6953429 | 6953911 | 6953429 | ID=Msa1273230-mRNA-1:exon:2695;Parent=Msa1273230-mRNA-1 |
| chr8_3 | exon | 6954038 | 6954106 | 6954038 | ID=Msa1273230-mRNA-1:exon:2696;Parent=Msa1273230-mRNA-1 |
| chr8_3 | exon | 6954560 | 6954892 | 6954560 | ID=Msa1273230-mRNA-1:exon:2697;Parent=Msa1273230-mRNA-1 |
| chr8_3 | CDS | 6953429 | 6953911 | 6953429 | ID=Msa1273230-mRNA-1:cds;Parent=Msa1273230-mRNA-1 |
| chr8_3 | CDS | 6954038 | 6954106 | 6954038 | ID=Msa1273230-mRNA-1:cds;Parent=Msa1273230-mRNA-1 |
| chr8_3 | CDS | 6954560 | 6954892 | 6954560 | ID=Msa1273230-mRNA-1:cds;Parent=Msa1273230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
