AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1249490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1249490 MtrunA17_Chr8g0365061 79.100 311 56 2 198 499 6 316 1.83e-169 480
Msa1249490 MtrunA17_Chr7g0226131 78.879 232 49 0 1 232 1 232 1.51e-139 401
Msa1249490 MtrunA17_Chr6g0462331 45.749 247 126 5 1 241 1 245 5.72e-61 206
Msa1249490 MtrunA17_Chr1g0178781 46.352 233 115 5 270 492 93 325 1.27e-54 186
Msa1249490 MtrunA17_Chr1g0202531 40.467 257 147 3 1 251 19 275 3.98e-54 188
Msa1249490 MtrunA17_Chr7g0215391 40.000 250 143 3 1 243 12 261 6.95e-52 182
Msa1249490 MtrunA17_Chr1g0194781 40.000 250 143 3 1 243 12 261 6.95e-52 182
Msa1249490 MtrunA17_Chr8g0381901 39.015 264 134 6 211 458 31 283 3.00e-47 165
Msa1249490 MtrunA17_Chr5g0446191 28.814 236 155 7 6 235 268 496 7.46e-22 99.0
Msa1249490 MtrunA17_Chr5g0446231 27.234 235 160 7 6 235 260 488 3.57e-20 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1249490 AT1G23850.1 27.757 263 144 6 276 492 85 347 1.74e-26 110
Msa1249490 AT1G23830.1 31.008 258 143 6 270 492 84 341 3.63e-21 95.1
Msa1249490 AT1G23840.1 26.781 351 195 10 180 492 7 333 4.02e-20 92.0

Find 117 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTCCATGTTCTAGAATT+TGG 0.070975 8_2:+44165307 Msa1249490:CDS
TCAATACTCGAAGGGATTTA+TGG 0.190076 8_2:+44165640 Msa1249490:CDS
GATGCTTTCTGTTGATTCTT+AGG 0.202112 8_2:-44159976 None:intergenic
CCATCATTCAGAAGCGAAAA+TGG 0.226812 8_2:+44160178 Msa1249490:CDS
AAAGTTGTTAAAGATGTATT+TGG 0.256652 8_2:+44165582 Msa1249490:CDS
AATATGGAAGGTTTCAACTA+TGG 0.315092 8_2:-44165197 None:intergenic
ATAGATTTAGCTTCAAAGAT+AGG 0.315786 8_2:+44165346 Msa1249490:CDS
TTCAACAAAACAAAGGGAAT+TGG 0.318155 8_2:+44160406 Msa1249490:CDS
CATCCTTTGAATTAACAATA+TGG 0.321082 8_2:-44165213 None:intergenic
TGCGAACGCCATGCCTTTAG+AGG 0.341762 8_2:+44160257 Msa1249490:CDS
CTTGTCTCATACCCCTTTCC+CGG 0.341952 8_2:-44160462 None:intergenic
CTCATCAACTTGGATTACTA+TGG 0.346442 8_2:+44165482 Msa1249490:CDS
ATTTCCCTTCAGCTGAGATT+TGG 0.348120 8_2:-44160140 None:intergenic
AAGAAGATGGATGAGGAATT+AGG 0.348540 8_2:+44165901 Msa1249490:CDS
TTCAAGATAGTTTGAGCAAT+GGG 0.351790 8_2:-44160525 None:intergenic
GCAAGTGGAAAGGTGGCTCT+TGG 0.378022 8_2:-44160571 None:intergenic
GCATGGTGATTCCATTGAAA+TGG 0.390497 8_2:+44165830 Msa1249490:CDS
CGATTTCAGTGTTGATTTGA+GGG 0.394788 8_2:-44160221 None:intergenic
TGAAATGGACAGAGTTCATC+AGG 0.395241 8_2:-44160381 None:intergenic
GTTTGTCAATCATATCCTTA+AGG 0.409910 8_2:-44165393 None:intergenic
GTTTACATAGTTCGTGATAC+TGG 0.413520 8_2:-44160092 None:intergenic
TCAAGCAACCATTCTGCAAC+CGG 0.415380 8_2:+44160443 Msa1249490:CDS
AGCAGAGGGTGCCAAAGAAA+AGG 0.417403 8_2:+44165694 Msa1249490:CDS
ACCATTCTGCAACCGGGAAA+GGG 0.417546 8_2:+44160450 Msa1249490:CDS
CAAGTGGAAAGGTGGCTCTT+GGG 0.424471 8_2:-44160570 None:intergenic
AACTATGTAAACGGAAGCTT+TGG 0.426298 8_2:+44160103 Msa1249490:CDS
AACCAAGTTGAATCAACTTA+AGG 0.428427 8_2:-44165270 None:intergenic
AGATTGCTTTCTCTTGCCTC+TGG 0.429156 8_2:-44160007 None:intergenic
TGATTGCAAGGAGAGATGTT+TGG 0.431565 8_2:+44165876 Msa1249490:CDS
TCTTGGGTTTGATATTGAAC+AGG 0.432713 8_2:-44160554 None:intergenic
ATGATCCTCGCAACGTCAAC+CGG 0.434435 8_2:-44160639 None:intergenic
CTGTGCTCGTCATAAGGTCT+TGG 0.434602 8_2:-44160045 None:intergenic
AACCATTCTGCAACCGGGAA+AGG 0.439893 8_2:+44160449 Msa1249490:CDS
TCAACAAAACAAAGGGAATT+GGG 0.439975 8_2:+44160407 Msa1249490:CDS
CTACATCCTCACCGATCAAC+CGG 0.444300 8_2:+44160620 Msa1249490:CDS
AGAGAAGAAAATGAACCTTA+AGG 0.447882 8_2:+44165378 Msa1249490:CDS
CTTCCATATTGTTAATTCAA+AGG 0.450635 8_2:+44165210 Msa1249490:CDS
AAGAATCTGTGCTCGTCATA+AGG 0.452116 8_2:-44160051 None:intergenic
GAATTAGGCAAAGATGTAAG+AGG 0.452862 8_2:+44165916 Msa1249490:CDS
CAAGGTAGTCATTAATGCCT+TGG 0.457105 8_2:-44160335 None:intergenic
GAAGCGAAAATGGGAACAAC+TGG 0.458894 8_2:+44160188 Msa1249490:CDS
GGAGACTATGAACAAGGAAA+TGG 0.462586 8_2:+44165781 Msa1249490:CDS
GAGATGTTTGGAAAAGAAGA+TGG 0.462764 8_2:+44165888 Msa1249490:CDS
ACGATTTCAGTGTTGATTTG+AGG 0.463765 8_2:-44160222 None:intergenic
TTCACCTTCAACAAAACAAA+GGG 0.472719 8_2:+44160400 Msa1249490:CDS
GCAGAGGGTGCCAAAGAAAA+GGG 0.474375 8_2:+44165695 Msa1249490:CDS
TAGCTTCAAAACCATGATAC+GGG 0.477285 8_2:+44160290 Msa1249490:CDS
ATTCTTTACTGTTGCTCACC+AGG 0.478766 8_2:+44160068 Msa1249490:CDS
CATATTGTTAATTCAAAGGA+TGG 0.481405 8_2:+44165214 Msa1249490:CDS
TCAGTGTTGATTTGAGGGTG+AGG 0.482065 8_2:-44160216 None:intergenic
CAGTGTTGATTTGAGGGTGA+GGG 0.482910 8_2:-44160215 None:intergenic
AGTATCACGAACTATGTAAA+CGG 0.485937 8_2:+44160094 Msa1249490:CDS
GGGTATGAGACAAGTGTGAC+CGG 0.490803 8_2:+44160471 Msa1249490:CDS
TACCTTAAGTTGATTCAACT+TGG 0.498470 8_2:+44165268 Msa1249490:CDS
TTAGCTTCAAAACCATGATA+CGG 0.499906 8_2:+44160289 Msa1249490:CDS
GATCATTGCTGAAGAACTAA+AGG 0.500055 8_2:+44160656 Msa1249490:CDS
CATCATTCAGAAGCGAAAAT+GGG 0.505061 8_2:+44160179 Msa1249490:CDS
CCCCTTTCCCGGTTGCAGAA+TGG 0.509924 8_2:-44160451 None:intergenic
AAGGCATTAATGACTACCTT+GGG 0.510007 8_2:+44160337 Msa1249490:CDS
CAAGGCATTAATGACTACCT+TGG 0.511639 8_2:+44160336 Msa1249490:CDS
CGCAACGTCAACCGGTTGAT+CGG 0.513936 8_2:-44160631 None:intergenic
CAGTTCCAAATTCTAGAACA+TGG 0.514862 8_2:-44165312 None:intergenic
TTGACAACTACTCATCAACT+TGG 0.515616 8_2:+44165472 Msa1249490:CDS
CTTTGAATTAACAATATGGA+AGG 0.518531 8_2:-44165209 None:intergenic
CGGTGAGGATGTAGTAGATG+AGG 0.520259 8_2:-44160611 None:intergenic
AATTAGGCAAAGATGTAAGA+GGG 0.521247 8_2:+44165917 Msa1249490:CDS
CATGGTGATTCCATTGAAAT+GGG 0.527246 8_2:+44165831 Msa1249490:CDS
TGGGATATCAATGGTGCAAG+TGG 0.530246 8_2:-44160586 None:intergenic
GGTGAGGATGTAGTAGATGA+GGG 0.530641 8_2:-44160610 None:intergenic
GATCACCCTACCCCGTATCA+TGG 0.533388 8_2:-44160301 None:intergenic
ATAGTTCGTGATACTGGTCC+TGG 0.534989 8_2:-44160086 None:intergenic
CAGTTCCAAATCTCAGCTGA+AGG 0.536831 8_2:+44160135 Msa1249490:CDS
ATTAATGCCTTGGCGATCAA+AGG 0.538491 8_2:-44160325 None:intergenic
CTTCTTAACTGTGTCACGCC+CGG 0.547245 8_2:-44160490 None:intergenic
TTTCAAGATAGTTTGAGCAA+TGG 0.549479 8_2:-44160526 None:intergenic
CCATTCTGCAACCGGGAAAG+GGG 0.554644 8_2:+44160451 Msa1249490:CDS
TTTCACCTTCAACAAAACAA+AGG 0.558062 8_2:+44160399 Msa1249490:CDS
CTTGATTCATCAAAATTGAG+AGG 0.563059 8_2:+44165418 Msa1249490:CDS
AGGATGTAGTAGATGAGGGG+TGG 0.563235 8_2:-44160606 None:intergenic
TTGTAATTTCAATACTCGAA+GGG 0.563335 8_2:+44165632 Msa1249490:CDS
AGTGTTGATTTGAGGGTGAG+GGG 0.563551 8_2:-44160214 None:intergenic
GCGAACGCCATGCCTTTAGA+GGG 0.570183 8_2:+44160258 Msa1249490:CDS
TGCTTTAAGCAACAAAGAGA+GGG 0.570384 8_2:+44160683 Msa1249490:CDS
CAAAACCATGATACGGGGTA+GGG 0.571288 8_2:+44160296 Msa1249490:CDS
TCAAAACCATGATACGGGGT+AGG 0.574363 8_2:+44160295 Msa1249490:CDS
CAAGCAACCATTCTGCAACC+GGG 0.575960 8_2:+44160444 Msa1249490:CDS
TTGCTTTAAGCAACAAAGAG+AGG 0.576173 8_2:+44160682 Msa1249490:CDS
ATTTGGAATGGTGTTCTATG+TGG 0.580838 8_2:+44165599 Msa1249490:CDS
GATGAGGGGTGGGATATCAA+TGG 0.583525 8_2:-44160595 None:intergenic
ATCAACCGGTTGACGTTGCG+AGG 0.584684 8_2:+44160634 Msa1249490:CDS
CAATGGTGCAAGTGGAAAGG+TGG 0.586384 8_2:-44160578 None:intergenic
TGAGTTTGTAAGGTTTCCCA+AGG 0.586778 8_2:-44160353 None:intergenic
TTTGGAAAAGAAGATGGATG+AGG 0.587116 8_2:+44165894 Msa1249490:CDS
TGTTAAAGATGTATTTGGAA+TGG 0.588440 8_2:+44165587 Msa1249490:CDS
CAAGATAGTTTGAGCAATGG+GGG 0.591884 8_2:-44160523 None:intergenic
TCGTCATAAGGTCTTGGAGT+CGG 0.596159 8_2:-44160039 None:intergenic
GGATGTAGTAGATGAGGGGT+GGG 0.598699 8_2:-44160605 None:intergenic
TGGTTGCTTGAATGAGTGAA+TGG 0.601299 8_2:-44160431 None:intergenic
TATCAATGGTGCAAGTGGAA+AGG 0.602868 8_2:-44160581 None:intergenic
CTTGTAATTTCAATACTCGA+AGG 0.605595 8_2:+44165631 Msa1249490:CDS
AGTTCCAAATCTCAGCTGAA+GGG 0.607927 8_2:+44160136 Msa1249490:CDS
GGTGATTCCATTGAAATGGG+TGG 0.620908 8_2:+44165834 Msa1249490:CDS
GTGATCACCTTTGATCGCCA+AGG 0.624948 8_2:+44160318 Msa1249490:CDS
AAAGCATCAGCTTCTGCCAG+AGG 0.627653 8_2:+44159991 Msa1249490:CDS
ATTAGGCAAAGATGTAAGAG+GGG 0.628101 8_2:+44165918 Msa1249490:CDS
CCAAATTCTAGAACATGGAG+AGG 0.631506 8_2:-44165307 None:intergenic
GGTATGAGACAAGTGTGACC+GGG 0.636850 8_2:+44160472 Msa1249490:CDS
GAACGCCATGCCTTTAGAGG+GGG 0.642642 8_2:+44160260 Msa1249490:CDS
TCAAGATAGTTTGAGCAATG+GGG 0.648752 8_2:-44160524 None:intergenic
GTGAGGATGTAGTAGATGAG+GGG 0.651469 8_2:-44160609 None:intergenic
GAAATGGACAGAGTTCATCA+GGG 0.670511 8_2:-44160380 None:intergenic
TATGTTGGAGACTATGAACA+AGG 0.671924 8_2:+44165775 Msa1249490:CDS
ACAAGTTGGATTGTTCTGCA+TGG 0.677236 8_2:+44165813 Msa1249490:CDS
AAATGGACAGAGTTCATCAG+GGG 0.680123 8_2:-44160379 None:intergenic
CGTCAACCGGTTGATCGGTG+AGG 0.683528 8_2:-44160626 None:intergenic
CGAACGCCATGCCTTTAGAG+GGG 0.684578 8_2:+44160259 Msa1249490:CDS
AGCTTCAAAACCATGATACG+GGG 0.691193 8_2:+44160291 Msa1249490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATGAAAAAAAAAATTAA+AGG + chr8_2:44163469-44163488 Msa1249490:intron 10.0%
!!! ATTACTAATATTTTTATAAG+AGG + chr8_2:44163607-44163626 Msa1249490:intron 10.0%
!!! CAAAAAATATTTTTAAAGAT+TGG - chr8_2:44164108-44164127 None:intergenic 10.0%
!!! CTATTTGTATTTAAAATTAA+GGG + chr8_2:44164694-44164713 Msa1249490:intron 10.0%
!!! TTGACAATTTATTCTATTTT+TGG - chr8_2:44161196-44161215 None:intergenic 15.0%
!!! TATGTTTTCAATATTTTGTT+TGG + chr8_2:44161734-44161753 Msa1249490:intron 15.0%
!!! ATGTTTTCAATATTTTGTTT+GGG + chr8_2:44161735-44161754 Msa1249490:intron 15.0%
!! ATATCAATTAAATCAAAGAT+TGG - chr8_2:44162617-44162636 None:intergenic 15.0%
!!! ATTGATTTCATAAGATTATT+TGG + chr8_2:44162842-44162861 Msa1249490:intron 15.0%
!!! TGTTACTAATATTTTTTTAG+AGG + chr8_2:44163263-44163282 Msa1249490:intron 15.0%
!! CAAAATATTATGTTAAAGAT+TGG - chr8_2:44163298-44163317 None:intergenic 15.0%
!! ATAATAATATTGTTGAAGAT+TGG - chr8_2:44163427-44163446 None:intergenic 15.0%
!! TGTTACTAATATATTATTAG+AGG + chr8_2:44163703-44163722 Msa1249490:intron 15.0%
!!! CAATCTTTAACAATATTTTT+TGG + chr8_2:44163799-44163818 Msa1249490:intron 15.0%
!!! TTGTTACTAATTTTTTTTAG+AGG + chr8_2:44164135-44164154 Msa1249490:intron 15.0%
!! TAAAAAATTAGAAAGTTTCA+AGG - chr8_2:44164479-44164498 None:intergenic 15.0%
!!! GCTATTTGTATTTAAAATTA+AGG + chr8_2:44164693-44164712 Msa1249490:intron 15.0%
!!! TTTAAAATTAAGGGTATTTT+TGG + chr8_2:44164703-44164722 Msa1249490:intron 15.0%
!!! GGATTTTGAAAAAAATGTAT+GGG - chr8_2:44160885-44160904 None:intergenic 20.0%
!!! TGGATTTTGAAAAAAATGTA+TGG - chr8_2:44160886-44160905 None:intergenic 20.0%
!! AAGAAAAAGAAAAGAAGAAA+AGG + chr8_2:44161155-44161174 Msa1249490:intron 20.0%
!! TCATTCTATTTACATTCAAA+AGG - chr8_2:44161285-44161304 None:intergenic 20.0%
!!! TGTTTTCAATATTTTGTTTG+GGG + chr8_2:44161736-44161755 Msa1249490:intron 20.0%
!!! GTATTTTAAGCATTCATTTA+TGG + chr8_2:44161807-44161826 Msa1249490:intron 20.0%
!! AGAATCAAAAACAACAAATT+TGG + chr8_2:44161957-44161976 Msa1249490:intron 20.0%
!! GAATCAAAAACAACAAATTT+GGG + chr8_2:44161958-44161977 Msa1249490:intron 20.0%
!! TAAAAAAGTTATATTTCGTC+TGG - chr8_2:44162275-44162294 None:intergenic 20.0%
!! TAAAAAGCTAGAATTCATAT+AGG + chr8_2:44162904-44162923 Msa1249490:intron 20.0%
!! AATTCATATAGGTGATTATT+AGG + chr8_2:44162915-44162934 Msa1249490:intron 20.0%
!! GAGCAAAAATTAATGTTAAA+GGG - chr8_2:44163238-44163257 None:intergenic 20.0%
!! TGAGCAAAAATTAATGTTAA+AGG - chr8_2:44163239-44163258 None:intergenic 20.0%
!!! TACTAATATTTTTTTTCCAG+AGG + chr8_2:44163329-44163348 Msa1249490:intron 20.0%
!!! TGTTACTAATATTGTTTTAG+AGG + chr8_2:44163766-44163785 Msa1249490:intron 20.0%
!!! GTTACTAATCTTTTTTTTAG+AGG + chr8_2:44163830-44163849 Msa1249490:intron 20.0%
!! TTTGTTAGCACTATATTAAA+TGG - chr8_2:44163865-44163884 None:intergenic 20.0%
!!! TGTTACTAATCTTTTATTAG+AGG + chr8_2:44164010-44164029 Msa1249490:intron 20.0%
!!! TGTTACTAATCTTTTTTTAG+AGG + chr8_2:44164073-44164092 Msa1249490:intron 20.0%
!! CATTGAATGTAATATCTTTA+AGG - chr8_2:44164425-44164444 None:intergenic 20.0%
!! CTTAAAGATATTACATTCAA+TGG + chr8_2:44164423-44164442 Msa1249490:intron 20.0%
!!! GAAACTTTCTAATTTTTTAG+AGG + chr8_2:44164480-44164499 Msa1249490:intron 20.0%
!! CATGACTTATAAAGTAAAAT+TGG - chr8_2:44164901-44164920 None:intergenic 20.0%
!! ATTATTCAAAAAATCTAGCA+TGG - chr8_2:44165242-44165261 None:intergenic 20.0%
!!! AAATTGTCATTTTTACTTGA+AGG + chr8_2:44165513-44165532 Msa1249490:CDS 20.0%
!! AAAGTTGTTAAAGATGTATT+TGG + chr8_2:44165582-44165601 Msa1249490:CDS 20.0%
! AAATAATCAATGACGGTTTA+GGG - chr8_2:44160958-44160977 None:intergenic 25.0%
! GAATCATCTGTTAAGTAAAT+TGG + chr8_2:44161056-44161075 Msa1249490:intron 25.0%
! AAGAAAAGAAGAAAAGGAAA+AGG + chr8_2:44161161-44161180 Msa1249490:intron 25.0%
! AGAATAAATTGTCAAGATCA+AGG + chr8_2:44161201-44161220 Msa1249490:intron 25.0%
! AATTGAAATCAAATGAGTGA+GGG - chr8_2:44161493-44161512 None:intergenic 25.0%
!! GTCAAAATTCAATTTTCTCT+CGG - chr8_2:44161872-44161891 None:intergenic 25.0%
!!! TCATATTTTAGAGAGAGAAT+AGG + chr8_2:44162340-44162359 Msa1249490:intron 25.0%
!!! CATATTTTAGAGAGAGAATA+GGG + chr8_2:44162341-44162360 Msa1249490:intron 25.0%
! GAAAATACAGTGTATTCATT+GGG + chr8_2:44162365-44162384 Msa1249490:intron 25.0%
!!! TGAAAAGTACTTTTGAATCT+AGG + chr8_2:44162637-44162656 Msa1249490:intron 25.0%
! AAAACAACAATTCTAGACAT+AGG + chr8_2:44162679-44162698 Msa1249490:intron 25.0%
! GTATTGGAACTTAAAACTTT+CGG + chr8_2:44162727-44162746 Msa1249490:intron 25.0%
! AATTGGATTGTTTAATGGTT+TGG + chr8_2:44162796-44162815 Msa1249490:intron 25.0%
! ATTGGATTGTTTAATGGTTT+GGG + chr8_2:44162797-44162816 Msa1249490:intron 25.0%
! TAAACGTGAGCAAAATATTA+TGG - chr8_2:44163588-44163607 None:intergenic 25.0%
! AAGATATTCAATTCATGAAG+TGG + chr8_2:44164398-44164417 Msa1249490:intron 25.0%
!!! TCCACGTGTTATTTTATAAT+TGG + chr8_2:44164671-44164690 Msa1249490:intron 25.0%
! AAAGTTGTTAATTGTCAAAG+TGG + chr8_2:44164833-44164852 Msa1249490:intron 25.0%
!!! TTTGTTTCTCTTTTATTGGA+GGG - chr8_2:44164949-44164968 None:intergenic 25.0%
! TCTTCAAAGTTTAAGAAACA+TGG + chr8_2:44165009-44165028 Msa1249490:intron 25.0%
! TAAACCATGATACAAAATAG+AGG - chr8_2:44165154-44165173 None:intergenic 25.0%
! CTTTGAATTAACAATATGGA+AGG - chr8_2:44165212-44165231 None:intergenic 25.0%
! CTTCCATATTGTTAATTCAA+AGG + chr8_2:44165210-44165229 Msa1249490:CDS 25.0%
! CATCCTTTGAATTAACAATA+TGG - chr8_2:44165216-44165235 None:intergenic 25.0%
! CATATTGTTAATTCAAAGGA+TGG + chr8_2:44165214-44165233 Msa1249490:CDS 25.0%
!! ATAGATTTAGCTTCAAAGAT+AGG + chr8_2:44165346-44165365 Msa1249490:CDS 25.0%
! TGTTAAAGATGTATTTGGAA+TGG + chr8_2:44165587-44165606 Msa1249490:CDS 25.0%
! TTGTAATTTCAATACTCGAA+GGG + chr8_2:44165632-44165651 Msa1249490:CDS 25.0%
!!! TTTCACTTAATTTTAGCAGA+GGG + chr8_2:44165680-44165699 Msa1249490:CDS 25.0%
!!! AGATTTTTTTGCTACTATGT+TGG + chr8_2:44165760-44165779 Msa1249490:CDS 25.0%
!! AATGGAATTTTCATACAAGT+TGG + chr8_2:44165799-44165818 Msa1249490:CDS 25.0%
AGTATCACGAACTATGTAAA+CGG + chr8_2:44160094-44160113 Msa1249490:CDS 30.0%
TTAGCTTCAAAACCATGATA+CGG + chr8_2:44160289-44160308 Msa1249490:CDS 30.0%
!! TTGTTTTGTTGAAGGTGAAA+TGG - chr8_2:44160399-44160418 None:intergenic 30.0%
TTTCACCTTCAACAAAACAA+AGG + chr8_2:44160399-44160418 Msa1249490:CDS 30.0%
TTCACCTTCAACAAAACAAA+GGG + chr8_2:44160400-44160419 Msa1249490:CDS 30.0%
!!! AATTCCCTTTGTTTTGTTGA+AGG - chr8_2:44160407-44160426 None:intergenic 30.0%
TTCAACAAAACAAAGGGAAT+TGG + chr8_2:44160406-44160425 Msa1249490:CDS 30.0%
TCAACAAAACAAAGGGAATT+GGG + chr8_2:44160407-44160426 Msa1249490:CDS 30.0%
TTCAAGATAGTTTGAGCAAT+GGG - chr8_2:44160528-44160547 None:intergenic 30.0%
TTTCAAGATAGTTTGAGCAA+TGG - chr8_2:44160529-44160548 None:intergenic 30.0%
AATTCTTCATGAACATGGTT+CGG - chr8_2:44160768-44160787 None:intergenic 30.0%
AAAGAGAAAAAGGGTAAGAA+AGG + chr8_2:44160831-44160850 Msa1249490:intron 30.0%
CAAATAATCAATGACGGTTT+AGG - chr8_2:44160959-44160978 None:intergenic 30.0%
AAGGGACAAATAATCAATGA+CGG - chr8_2:44160965-44160984 None:intergenic 30.0%
TGTATCATGTTTAAACACCT+AGG + chr8_2:44161224-44161243 Msa1249490:intron 30.0%
GTATCATGTTTAAACACCTA+GGG + chr8_2:44161225-44161244 Msa1249490:intron 30.0%
TTTAATTCTAAGCAAACCCT+AGG - chr8_2:44161244-44161263 None:intergenic 30.0%
! TAGGGTTTGCTTAGAATTAA+AGG + chr8_2:44161243-44161262 Msa1249490:intron 30.0%
! AGGGTTTGCTTAGAATTAAA+GGG + chr8_2:44161244-44161263 Msa1249490:intron 30.0%
ACAAAAGAAAGGACATTTGT+GGG - chr8_2:44161344-44161363 None:intergenic 30.0%
TACAAAAGAAAGGACATTTG+TGG - chr8_2:44161345-44161364 None:intergenic 30.0%
! TGGATCAAAAGGTCTTTTAA+GGG - chr8_2:44161385-44161404 None:intergenic 30.0%
! ATGGATCAAAAGGTCTTTTA+AGG - chr8_2:44161386-44161405 None:intergenic 30.0%
! TTTCAAAAGGCACAAAAACA+TGG - chr8_2:44161405-44161424 None:intergenic 30.0%
CATCCAAATATCGTTTCAAA+AGG - chr8_2:44161418-44161437 None:intergenic 30.0%
!!! CTTTTGAAACGATATTTGGA+TGG + chr8_2:44161416-44161435 Msa1249490:intron 30.0%
CAATTGAAATCAAATGAGTG+AGG - chr8_2:44161494-44161513 None:intergenic 30.0%
! TACTTACAAAGAAGTGTGTT+AGG + chr8_2:44161520-44161539 Msa1249490:intron 30.0%
AATGATTCAAAATGAATGCG+CGG - chr8_2:44161661-44161680 None:intergenic 30.0%
GACAAACAAAGAGTTAAGTT+GGG + chr8_2:44161758-44161777 Msa1249490:intron 30.0%
! ACAAACAAAGAGTTAAGTTG+GGG + chr8_2:44161759-44161778 Msa1249490:intron 30.0%
ATGCTTAAAATACTACTTCC+TGG - chr8_2:44161800-44161819 None:intergenic 30.0%
ACTTGTTTCACAAGTTATCT+AGG + chr8_2:44161840-44161859 Msa1249490:intron 30.0%
CTTGTTTCACAAGTTATCTA+GGG + chr8_2:44161841-44161860 Msa1249490:intron 30.0%
AAAACAACAAATTTGGGCAA+AGG + chr8_2:44161964-44161983 Msa1249490:intron 30.0%
AAAAGTTATATTTCGTCTGG+CGG - chr8_2:44162272-44162291 None:intergenic 30.0%
CGAAAATACAGTGTATTCAT+TGG + chr8_2:44162364-44162383 Msa1249490:intron 30.0%
TCATGAGAACTTTACAAAAG+TGG - chr8_2:44162466-44162485 None:intergenic 30.0%
ATGAACTAAATCTCCTTAGT+TGG + chr8_2:44162491-44162510 Msa1249490:intron 30.0%
!!! GATGTTTTGATAATCACACA+AGG + chr8_2:44162705-44162724 Msa1249490:intron 30.0%
! TTGATAATCACACAAGGTAT+TGG + chr8_2:44162711-44162730 Msa1249490:intron 30.0%
TCGACAATTGGATTGTTTAA+TGG + chr8_2:44162791-44162810 Msa1249490:intron 30.0%
AGTAAAAGTGGAGAGTAATA+AGG - chr8_2:44162988-44163007 None:intergenic 30.0%
!! ATTACTCTCCACTTTTACTT+TGG + chr8_2:44162989-44163008 Msa1249490:intron 30.0%
CTAAATTGCCAAAGTAAAAG+TGG - chr8_2:44163000-44163019 None:intergenic 30.0%
TGATTGAACTTTAAATCCTC+TGG - chr8_2:44163348-44163367 None:intergenic 30.0%
AATTCTGAATTCTGATGCAA+AGG + chr8_2:44163494-44163513 Msa1249490:intron 30.0%
ATTTATAGTCCAATCCTCAT+CGG + chr8_2:44164158-44164177 Msa1249490:intron 30.0%
AACAAAAATAATAGCCGATG+AGG - chr8_2:44164175-44164194 None:intergenic 30.0%
GCAGGAAAAAACATAAACTT+TGG + chr8_2:44164233-44164252 Msa1249490:intron 30.0%
CAAAGCTTGAATTGTAATGT+TGG + chr8_2:44164343-44164362 Msa1249490:intron 30.0%
TGAGTTTGATCTGTTGTTAA+CGG + chr8_2:44164602-44164621 Msa1249490:intron 30.0%
CGGTGGTAAAATAAAGTTAA+CGG + chr8_2:44164622-44164641 Msa1249490:intron 30.0%
GCCAATTATAAAATAACACG+TGG - chr8_2:44164675-44164694 None:intergenic 30.0%
!! CTTTGTTTCTCTTTTATTGG+AGG - chr8_2:44164950-44164969 None:intergenic 30.0%
! TCTTCCTCTATTTTGTATCA+TGG + chr8_2:44165147-44165166 Msa1249490:intron 30.0%
AATATGGAAGGTTTCAACTA+TGG - chr8_2:44165200-44165219 None:intergenic 30.0%
!! TACCTTAAGTTGATTCAACT+TGG + chr8_2:44165268-44165287 Msa1249490:CDS 30.0%
! AACCAAGTTGAATCAACTTA+AGG - chr8_2:44165273-44165292 None:intergenic 30.0%
AGAGAAGAAAATGAACCTTA+AGG + chr8_2:44165378-44165397 Msa1249490:CDS 30.0%
GTTTGTCAATCATATCCTTA+AGG - chr8_2:44165396-44165415 None:intergenic 30.0%
!! CTCAATTTTGATGAATCAAG+AGG - chr8_2:44165418-44165437 None:intergenic 30.0%
CTTGATTCATCAAAATTGAG+AGG + chr8_2:44165418-44165437 Msa1249490:CDS 30.0%
CTTGTAATTTCAATACTCGA+AGG + chr8_2:44165631-44165650 Msa1249490:CDS 30.0%
!! CTTTCACTTAATTTTAGCAG+AGG + chr8_2:44165679-44165698 Msa1249490:CDS 30.0%
!!! TGATGTTGATTTTCTTTGCA+TGG + chr8_2:44165725-44165744 Msa1249490:CDS 30.0%
!!! GATGTTGATTTTCTTTGCAT+GGG + chr8_2:44165726-44165745 Msa1249490:CDS 30.0%
!!! ATGTTGATTTTCTTTGCATG+GGG + chr8_2:44165727-44165746 Msa1249490:CDS 30.0%
ATAAAAACCACCCATTTCAA+TGG - chr8_2:44165844-44165863 None:intergenic 30.0%
! GATCTATTTTCATGATTGCA+AGG + chr8_2:44165864-44165883 Msa1249490:CDS 30.0%
AATTAGGCAAAGATGTAAGA+GGG + chr8_2:44165917-44165936 Msa1249490:CDS 30.0%
!! GATGCTTTCTGTTGATTCTT+AGG - chr8_2:44159979-44159998 None:intergenic 35.0%
GTTTACATAGTTCGTGATAC+TGG - chr8_2:44160095-44160114 None:intergenic 35.0%
AACTATGTAAACGGAAGCTT+TGG + chr8_2:44160103-44160122 Msa1249490:CDS 35.0%
CATCATTCAGAAGCGAAAAT+GGG + chr8_2:44160179-44160198 Msa1249490:CDS 35.0%
!! CGATTTCAGTGTTGATTTGA+GGG - chr8_2:44160224-44160243 None:intergenic 35.0%
!! ACGATTTCAGTGTTGATTTG+AGG - chr8_2:44160225-44160244 None:intergenic 35.0%
TAGCTTCAAAACCATGATAC+GGG + chr8_2:44160290-44160309 Msa1249490:CDS 35.0%
! AAGGCATTAATGACTACCTT+GGG + chr8_2:44160337-44160356 Msa1249490:CDS 35.0%
TCAAGATAGTTTGAGCAATG+GGG - chr8_2:44160527-44160546 None:intergenic 35.0%
TCTTGGGTTTGATATTGAAC+AGG - chr8_2:44160557-44160576 None:intergenic 35.0%
GATCATTGCTGAAGAACTAA+AGG + chr8_2:44160656-44160675 Msa1249490:CDS 35.0%
! TTGCTTTAAGCAACAAAGAG+AGG + chr8_2:44160682-44160701 Msa1249490:CDS 35.0%
! TGCTTTAAGCAACAAAGAGA+GGG + chr8_2:44160683-44160702 Msa1249490:CDS 35.0%
ATCAATCCCATTATCAATCC+GGG - chr8_2:44160723-44160742 None:intergenic 35.0%
GATCAATCCCATTATCAATC+CGG - chr8_2:44160724-44160743 None:intergenic 35.0%
ATTCTTCATGAACATGGTTC+GGG - chr8_2:44160767-44160786 None:intergenic 35.0%
TCTGCAATTCTTCATGAACA+TGG - chr8_2:44160773-44160792 None:intergenic 35.0%
CACAGTGACAAAGAGAAAAA+GGG + chr8_2:44160822-44160841 Msa1249490:intron 35.0%
! AAAAAGGGTAAGAAAGGTAC+CGG + chr8_2:44160837-44160856 Msa1249490:intron 35.0%
AAAGTGCGTCAAAAATGAAC+TGG - chr8_2:44160906-44160925 None:intergenic 35.0%
!! GTTCATTTTTGACGCACTTT+AGG + chr8_2:44160906-44160925 Msa1249490:intron 35.0%
AGTAGGGGAACATTCAAATA+GGG + chr8_2:44160995-44161014 Msa1249490:intron 35.0%
GGTAAGTCTTAAGTCAAGTT+GGG + chr8_2:44161016-44161035 Msa1249490:intron 35.0%
! GTAAGTCTTAAGTCAAGTTG+GGG + chr8_2:44161017-44161036 Msa1249490:intron 35.0%
ATTCAAAAGGCCAAGCATAA+GGG - chr8_2:44161313-44161332 None:intergenic 35.0%
AATTCAAAAGGCCAAGCATA+AGG - chr8_2:44161314-44161333 None:intergenic 35.0%
GTGGGTCAATTGAATTCAAA+AGG - chr8_2:44161326-44161345 None:intergenic 35.0%
!! GTCTTTTAAGGGTTGTAACT+TGG - chr8_2:44161374-44161393 None:intergenic 35.0%
GCACAAAAACATGGATCAAA+AGG - chr8_2:44161396-44161415 None:intergenic 35.0%
!!! GTGCCTTTTGAAACGATATT+TGG + chr8_2:44161412-44161431 Msa1249490:intron 35.0%
! TGGAATGTTAACTTGATTGC+CGG + chr8_2:44161453-44161472 Msa1249490:intron 35.0%
AACTCATTTCACATTTGCAG+TGG + chr8_2:44161603-44161622 Msa1249490:intron 35.0%
ATGATTCAAAATGAATGCGC+GGG - chr8_2:44161660-44161679 None:intergenic 35.0%
GGACAAACAAAGAGTTAAGT+TGG + chr8_2:44161757-44161776 Msa1249490:intron 35.0%
CATTCATTTCCTGCACAAAT+GGG - chr8_2:44161922-44161941 None:intergenic 35.0%
ACATTCATTTCCTGCACAAA+TGG - chr8_2:44161923-44161942 None:intergenic 35.0%
TGAGATTTCATCAAGATCCT+TGG + chr8_2:44162402-44162421 Msa1249490:intron 35.0%
ATCTCCTTAGTTGGAATTAG+AGG + chr8_2:44162500-44162519 Msa1249490:intron 35.0%
AGTACCTCTAATTCCAACTA+AGG - chr8_2:44162507-44162526 None:intergenic 35.0%
TAAACGATACGATCGACAAT+TGG + chr8_2:44162779-44162798 Msa1249490:intron 35.0%
TGAGCGATACGTGATAATAT+CGG + chr8_2:44162881-44162900 Msa1249490:intron 35.0%
ATGTATAAATCGTCTCCTCA+AGG - chr8_2:44163109-44163128 None:intergenic 35.0%
AAATAATAGCCGATGAGGAT+TGG - chr8_2:44164170-44164189 None:intergenic 35.0%
AGCTTGAATTGTAATGTTGG+CGG + chr8_2:44164346-44164365 Msa1249490:intron 35.0%
!! AAGGGTACTATGATGAATTC+TGG + chr8_2:44164519-44164538 Msa1249490:intron 35.0%
!! AGAGGTATCTGATATACTCA+AGG + chr8_2:44165066-44165085 Msa1249490:intron 35.0%
!! CAGTTCCAAATTCTAGAACA+TGG - chr8_2:44165315-44165334 None:intergenic 35.0%
TTGACAACTACTCATCAACT+TGG + chr8_2:44165472-44165491 Msa1249490:CDS 35.0%
CTCATCAACTTGGATTACTA+TGG + chr8_2:44165482-44165501 Msa1249490:CDS 35.0%
!! CTTGAAGGATTTGAGTTTTG+TGG + chr8_2:44165528-44165547 Msa1249490:CDS 35.0%
! ATTTGGAATGGTGTTCTATG+TGG + chr8_2:44165599-44165618 Msa1249490:CDS 35.0%
TCAATACTCGAAGGGATTTA+TGG + chr8_2:44165640-44165659 Msa1249490:CDS 35.0%
! TCAGAAAAAGCCCTTTTCTT+TGG - chr8_2:44165708-44165727 None:intergenic 35.0%
TATGTTGGAGACTATGAACA+AGG + chr8_2:44165775-44165794 Msa1249490:CDS 35.0%
CATGGTGATTCCATTGAAAT+GGG + chr8_2:44165831-44165850 Msa1249490:CDS 35.0%
GAGATGTTTGGAAAAGAAGA+TGG + chr8_2:44165888-44165907 Msa1249490:CDS 35.0%
TTTGGAAAAGAAGATGGATG+AGG + chr8_2:44165894-44165913 Msa1249490:CDS 35.0%
AAGAAGATGGATGAGGAATT+AGG + chr8_2:44165901-44165920 Msa1249490:CDS 35.0%
GAATTAGGCAAAGATGTAAG+AGG + chr8_2:44165916-44165935 Msa1249490:CDS 35.0%
ATTAGGCAAAGATGTAAGAG+GGG + chr8_2:44165918-44165937 Msa1249490:CDS 35.0%
AAGAATCTGTGCTCGTCATA+AGG - chr8_2:44160054-44160073 None:intergenic 40.0%
ATTCTTTACTGTTGCTCACC+AGG + chr8_2:44160068-44160087 Msa1249490:CDS 40.0%
AGTTCCAAATCTCAGCTGAA+GGG + chr8_2:44160136-44160155 Msa1249490:CDS 40.0%
ATTTCCCTTCAGCTGAGATT+TGG - chr8_2:44160143-44160162 None:intergenic 40.0%
! CCATTTTCGCTTCTGAATGA+TGG - chr8_2:44160181-44160200 None:intergenic 40.0%
CCATCATTCAGAAGCGAAAA+TGG + chr8_2:44160178-44160197 Msa1249490:CDS 40.0%
CTAAATTCTTCCCCCTCTAA+AGG - chr8_2:44160273-44160292 None:intergenic 40.0%
AGCTTCAAAACCATGATACG+GGG + chr8_2:44160291-44160310 Msa1249490:CDS 40.0%
ATTAATGCCTTGGCGATCAA+AGG - chr8_2:44160328-44160347 None:intergenic 40.0%
CAAGGTAGTCATTAATGCCT+TGG - chr8_2:44160338-44160357 None:intergenic 40.0%
! CAAGGCATTAATGACTACCT+TGG + chr8_2:44160336-44160355 Msa1249490:CDS 40.0%
TGAGTTTGTAAGGTTTCCCA+AGG - chr8_2:44160356-44160375 None:intergenic 40.0%
!!! TCAGGGGTTTTGAGTTTGTA+AGG - chr8_2:44160366-44160385 None:intergenic 40.0%
AAATGGACAGAGTTCATCAG+GGG - chr8_2:44160382-44160401 None:intergenic 40.0%
GAAATGGACAGAGTTCATCA+GGG - chr8_2:44160383-44160402 None:intergenic 40.0%
TGAAATGGACAGAGTTCATC+AGG - chr8_2:44160384-44160403 None:intergenic 40.0%
TGGTTGCTTGAATGAGTGAA+TGG - chr8_2:44160434-44160453 None:intergenic 40.0%
CAAGATAGTTTGAGCAATGG+GGG - chr8_2:44160526-44160545 None:intergenic 40.0%
TATCAATGGTGCAAGTGGAA+AGG - chr8_2:44160584-44160603 None:intergenic 40.0%
!! CATGGTTCGGGATTTTTATG+CGG - chr8_2:44160755-44160774 None:intergenic 40.0%
GCAATGATAGCATCAGTGAT+TGG - chr8_2:44160798-44160817 None:intergenic 40.0%
TCACTGATGCTATCATTGCA+AGG + chr8_2:44160799-44160818 Msa1249490:intron 40.0%
GCACAGTGACAAAGAGAAAA+AGG + chr8_2:44160821-44160840 Msa1249490:intron 40.0%
TTTCATCAAGCAATGTGCTC+CGG - chr8_2:44160859-44160878 None:intergenic 40.0%
! TCCCTTTTTGCCATAGAGTA+GGG + chr8_2:44160979-44160998 Msa1249490:intron 40.0%
TTGAATGTTCCCCTACTCTA+TGG - chr8_2:44160992-44161011 None:intergenic 40.0%
GAGTAGGGGAACATTCAAAT+AGG + chr8_2:44160994-44161013 Msa1249490:intron 40.0%
GGGTAAGTCTTAAGTCAAGT+TGG + chr8_2:44161015-44161034 Msa1249490:intron 40.0%
!! AAGTCAAGTTGGGGAGAAAA+AGG + chr8_2:44161026-44161045 Msa1249490:intron 40.0%
AATGAATGTCCCCTTATGCT+TGG + chr8_2:44161300-44161319 Msa1249490:intron 40.0%
TTCAAAAGGCCAAGCATAAG+GGG - chr8_2:44161312-44161331 None:intergenic 40.0%
TTAAGGGTTGTAACTTGGCT+CGG - chr8_2:44161369-44161388 None:intergenic 40.0%
GGATGGACACATAACTTGAT+TGG + chr8_2:44161433-44161452 Msa1249490:intron 40.0%
! ACAAAGAAGTGTGTTAGGTG+TGG + chr8_2:44161525-44161544 Msa1249490:intron 40.0%
TAAGATGACTAAGGCGTAAG+AGG - chr8_2:44161894-44161913 None:intergenic 40.0%
TGGGTAGAGTAAGATGACTA+AGG - chr8_2:44161903-44161922 None:intergenic 40.0%
TTCCAGAAAGTTGGAAGATC+AGG + chr8_2:44162121-44162140 Msa1249490:intron 40.0%
AAATTCTTCCTGGCGAAGTA+AGG + chr8_2:44162170-44162189 Msa1249490:intron 40.0%
CAAGGAACTTGATTTCTCCA+AGG - chr8_2:44162422-44162441 None:intergenic 40.0%
GAGAAATCAAGTTCCTTGCA+TGG + chr8_2:44162424-44162443 Msa1249490:intron 40.0%
CAAAAGTGGAAGAAGAGTTG+AGG - chr8_2:44162452-44162471 None:intergenic 40.0%
! GTAATAAGGCGTAAAAGCGT+TGG - chr8_2:44162974-44162993 None:intergenic 40.0%
TGGAAGATAGATTCCGACAT+TGG + chr8_2:44163202-44163221 Msa1249490:intron 40.0%
GGAAGATAGATTCCGACATT+GGG + chr8_2:44163203-44163222 Msa1249490:intron 40.0%
ATAGATTCCGACATTGGGAA+TGG + chr8_2:44163208-44163227 Msa1249490:intron 40.0%
!!! GCTCACGTTTGTTTTATCAG+AGG + chr8_2:44163919-44163938 Msa1249490:intron 40.0%
AGACTCGTGAGAAATAAAGC+AGG + chr8_2:44164215-44164234 Msa1249490:intron 40.0%
AGGTGATGAGATGTGATCAA+AGG + chr8_2:44164500-44164519 Msa1249490:intron 40.0%
GGTGATGAGATGTGATCAAA+GGG + chr8_2:44164501-44164520 Msa1249490:intron 40.0%
GTTTGATCTGTTGTTAACGG+TGG + chr8_2:44164605-44164624 Msa1249490:intron 40.0%
TTGTCAAAGTGGCAATCACA+TGG + chr8_2:44164844-44164863 Msa1249490:intron 40.0%
CAAGAAGAAACAGAAGCTAG+AGG + chr8_2:44165048-44165067 Msa1249490:intron 40.0%
!! CCAAATTCTAGAACATGGAG+AGG - chr8_2:44165310-44165329 None:intergenic 40.0%
!! CCTCTCCATGTTCTAGAATT+TGG + chr8_2:44165307-44165326 Msa1249490:CDS 40.0%
GGAGACTATGAACAAGGAAA+TGG + chr8_2:44165781-44165800 Msa1249490:CDS 40.0%
! ACAAGTTGGATTGTTCTGCA+TGG + chr8_2:44165813-44165832 Msa1249490:CDS 40.0%
GCATGGTGATTCCATTGAAA+TGG + chr8_2:44165830-44165849 Msa1249490:CDS 40.0%
TGATTGCAAGGAGAGATGTT+TGG + chr8_2:44165876-44165895 Msa1249490:CDS 40.0%
AGATTGCTTTCTCTTGCCTC+TGG - chr8_2:44160010-44160029 None:intergenic 45.0%
TCGTCATAAGGTCTTGGAGT+CGG - chr8_2:44160042-44160061 None:intergenic 45.0%
ATAGTTCGTGATACTGGTCC+TGG - chr8_2:44160089-44160108 None:intergenic 45.0%
CAGTTCCAAATCTCAGCTGA+AGG + chr8_2:44160135-44160154 Msa1249490:CDS 45.0%
GAAGCGAAAATGGGAACAAC+TGG + chr8_2:44160188-44160207 Msa1249490:CDS 45.0%
!! AGTGTTGATTTGAGGGTGAG+GGG - chr8_2:44160217-44160236 None:intergenic 45.0%
!! CAGTGTTGATTTGAGGGTGA+GGG - chr8_2:44160218-44160237 None:intergenic 45.0%
!! TCAGTGTTGATTTGAGGGTG+AGG - chr8_2:44160219-44160238 None:intergenic 45.0%
TCAAAACCATGATACGGGGT+AGG + chr8_2:44160295-44160314 Msa1249490:CDS 45.0%
CAAAACCATGATACGGGGTA+GGG + chr8_2:44160296-44160315 Msa1249490:CDS 45.0%
TCAAGCAACCATTCTGCAAC+CGG + chr8_2:44160443-44160462 Msa1249490:CDS 45.0%
TGGGATATCAATGGTGCAAG+TGG - chr8_2:44160589-44160608 None:intergenic 45.0%
GTGAGGATGTAGTAGATGAG+GGG - chr8_2:44160612-44160631 None:intergenic 45.0%
GGTGAGGATGTAGTAGATGA+GGG - chr8_2:44160613-44160632 None:intergenic 45.0%
TCAATCCGGGAAAGGCTAAA+GGG - chr8_2:44160710-44160729 None:intergenic 45.0%
ATCAATCCGGGAAAGGCTAA+AGG - chr8_2:44160711-44160730 None:intergenic 45.0%
AGCCTTTCCCGGATTGATAA+TGG + chr8_2:44160713-44160732 Msa1249490:intron 45.0%
! GCCTTTCCCGGATTGATAAT+GGG + chr8_2:44160714-44160733 Msa1249490:intron 45.0%
TCCCATTATCAATCCGGGAA+AGG - chr8_2:44160718-44160737 None:intergenic 45.0%
! GTCCCTTTTTGCCATAGAGT+AGG + chr8_2:44160978-44160997 Msa1249490:intron 45.0%
CCCCTACTCTATGGCAAAAA+GGG - chr8_2:44160983-44161002 None:intergenic 45.0%
! CCCTTTTTGCCATAGAGTAG+GGG + chr8_2:44160980-44160999 Msa1249490:intron 45.0%
TCCCCTACTCTATGGCAAAA+AGG - chr8_2:44160984-44161003 None:intergenic 45.0%
!! TTGGCTCGGCTACAAAAGAA+AGG - chr8_2:44161355-44161374 None:intergenic 45.0%
GAGGGTTATGAACACACATC+CGG - chr8_2:44161475-44161494 None:intergenic 45.0%
CTTACTCTACCCATTTGTGC+AGG + chr8_2:44161910-44161929 Msa1249490:intron 45.0%
AATTTCGCCAGGCGAAATAC+TGG + chr8_2:44162079-44162098 Msa1249490:intron 45.0%
GTCCTGATCTTCCAACTTTC+TGG - chr8_2:44162126-44162145 None:intergenic 45.0%
! AGGAAGAATTTTGCTCGCCA+TGG - chr8_2:44162161-44162180 None:intergenic 45.0%
ATGGCGAGCAAAATTCTTCC+TGG + chr8_2:44162160-44162179 Msa1249490:intron 45.0%
AAGAGTTGAGGATCCATGCA+AGG - chr8_2:44162440-44162459 None:intergenic 45.0%
TGATATCGCACTAGTCCTTG+AGG + chr8_2:44163091-44163110 Msa1249490:intron 45.0%
! CCACGACATGTTTTCAGTCA+TGG - chr8_2:44163185-44163204 None:intergenic 45.0%
CCATGACTGAAAACATGTCG+TGG + chr8_2:44163182-44163201 Msa1249490:intron 45.0%
GCGGAAAGTAAATTGCTCGA+AGG + chr8_2:44164365-44164384 Msa1249490:intron 45.0%
CAACCCAAAGTGTGCTGAAA+GGG + chr8_2:44164737-44164756 Msa1249490:intron 45.0%
AACCCAAAGTGTGCTGAAAG+GGG + chr8_2:44164738-44164757 Msa1249490:intron 45.0%
AACCCCTTTCAGCACACTTT+GGG - chr8_2:44164743-44164762 None:intergenic 45.0%
AGTGGCAATCACATGGAAAG+TGG + chr8_2:44164851-44164870 Msa1249490:intron 45.0%
AGTGGAAACCACAGACTTTG+TGG + chr8_2:44164869-44164888 Msa1249490:intron 45.0%
GTGGAAACCACAGACTTTGT+GGG + chr8_2:44164870-44164889 Msa1249490:intron 45.0%
GGTGATTCCATTGAAATGGG+TGG + chr8_2:44165834-44165853 Msa1249490:CDS 45.0%
!!! ATTTAAAATATTAATAAGTA+GGG - chr8_2:44163529-44163548 None:intergenic 5.0%
!!! TATTTAAAATATTAATAAGT+AGG - chr8_2:44163530-44163549 None:intergenic 5.0%
!! AAAAAAATAATGTTAAAAAT+TGG - chr8_2:44163642-44163661 None:intergenic 5.0%
!! AAAAAAATAATGTTAAAAAT+TGG - chr8_2:44163642-44163661 None:intergenic 5.0%
! AAAGCATCAGCTTCTGCCAG+AGG + chr8_2:44159991-44160010 Msa1249490:CDS 50.0%
CTGTGCTCGTCATAAGGTCT+TGG - chr8_2:44160048-44160067 None:intergenic 50.0%
! TTCTTCCCCCTCTAAAGGCA+TGG - chr8_2:44160268-44160287 None:intergenic 50.0%
GTGATCACCTTTGATCGCCA+AGG + chr8_2:44160318-44160337 Msa1249490:CDS 50.0%
CAAGCAACCATTCTGCAACC+GGG + chr8_2:44160444-44160463 Msa1249490:CDS 50.0%
AACCATTCTGCAACCGGGAA+AGG + chr8_2:44160449-44160468 Msa1249490:CDS 50.0%
ACCATTCTGCAACCGGGAAA+GGG + chr8_2:44160450-44160469 Msa1249490:CDS 50.0%
CTTGTCTCATACCCCTTTCC+CGG - chr8_2:44160465-44160484 None:intergenic 50.0%
GGGTATGAGACAAGTGTGAC+CGG + chr8_2:44160471-44160490 Msa1249490:CDS 50.0%
GGTATGAGACAAGTGTGACC+GGG + chr8_2:44160472-44160491 Msa1249490:CDS 50.0%
CTTCTTAACTGTGTCACGCC+CGG - chr8_2:44160493-44160512 None:intergenic 50.0%
CAAGTGGAAAGGTGGCTCTT+GGG - chr8_2:44160573-44160592 None:intergenic 50.0%
CAATGGTGCAAGTGGAAAGG+TGG - chr8_2:44160581-44160600 None:intergenic 50.0%
GATGAGGGGTGGGATATCAA+TGG - chr8_2:44160598-44160617 None:intergenic 50.0%
GGATGTAGTAGATGAGGGGT+GGG - chr8_2:44160608-44160627 None:intergenic 50.0%
AGGATGTAGTAGATGAGGGG+TGG - chr8_2:44160609-44160628 None:intergenic 50.0%
CGGTGAGGATGTAGTAGATG+AGG - chr8_2:44160614-44160633 None:intergenic 50.0%
CTACATCCTCACCGATCAAC+CGG + chr8_2:44160620-44160639 Msa1249490:CDS 50.0%
ATGATCCTCGCAACGTCAAC+CGG - chr8_2:44160642-44160661 None:intergenic 50.0%
! GGTTCGGGATTTTTATGCGG+AGG - chr8_2:44160752-44160771 None:intergenic 50.0%
AGTGTGTTAGGTGTGGTTCG+TGG + chr8_2:44161532-44161551 Msa1249490:intron 50.0%
GGGAGAGTTTGATAAGTGCC+AGG + chr8_2:44161779-44161798 Msa1249490:intron 50.0%
CGAAATACTGGCGAGCTGAA+TGG + chr8_2:44162091-44162110 Msa1249490:intron 50.0%
GGCGAAGAGTTCCAGAAAGT+TGG + chr8_2:44162112-44162131 Msa1249490:intron 50.0%
AGGACAAGAGAACTTCGCCA+TGG + chr8_2:44162141-44162160 Msa1249490:intron 50.0%
TTCTTCCTGGCGAAGTAAGG+CGG + chr8_2:44162173-44162192 Msa1249490:intron 50.0%
GATGAGCTTCCTTCACCAGT+GGG - chr8_2:44162229-44162248 None:intergenic 50.0%
AGATGAGCTTCCTTCACCAG+TGG - chr8_2:44162230-44162249 None:intergenic 50.0%
CCTTTCAGCACACTTTGGGT+TGG - chr8_2:44164739-44164758 None:intergenic 50.0%
CCAACCCAAAGTGTGCTGAA+AGG + chr8_2:44164736-44164755 Msa1249490:intron 50.0%
CAACCCCTTTCAGCACACTT+TGG - chr8_2:44164744-44164763 None:intergenic 50.0%
!! AGCAGAGGGTGCCAAAGAAA+AGG + chr8_2:44165694-44165713 Msa1249490:CDS 50.0%
!! GCAGAGGGTGCCAAAGAAAA+GGG + chr8_2:44165695-44165714 Msa1249490:CDS 50.0%
TGCGAACGCCATGCCTTTAG+AGG + chr8_2:44160257-44160276 Msa1249490:CDS 55.0%
GCGAACGCCATGCCTTTAGA+GGG + chr8_2:44160258-44160277 Msa1249490:CDS 55.0%
! CGAACGCCATGCCTTTAGAG+GGG + chr8_2:44160259-44160278 Msa1249490:CDS 55.0%
! GAACGCCATGCCTTTAGAGG+GGG + chr8_2:44160260-44160279 Msa1249490:CDS 55.0%
GATCACCCTACCCCGTATCA+TGG - chr8_2:44160304-44160323 None:intergenic 55.0%
CCATTCTGCAACCGGGAAAG+GGG + chr8_2:44160451-44160470 Msa1249490:CDS 55.0%
GCAAGTGGAAAGGTGGCTCT+TGG - chr8_2:44160574-44160593 None:intergenic 55.0%
CGCAACGTCAACCGGTTGAT+CGG - chr8_2:44160634-44160653 None:intergenic 55.0%
ATCAACCGGTTGACGTTGCG+AGG + chr8_2:44160634-44160653 Msa1249490:CDS 55.0%
! AGGGTCCCTTTAGCCTTTCC+CGG + chr8_2:44160702-44160721 Msa1249490:intron 55.0%
CCTGGCGAAATTTCTCGCCA+TGG - chr8_2:44162071-44162090 None:intergenic 55.0%
CCATGGCGAGAAATTTCGCC+AGG + chr8_2:44162068-44162087 Msa1249490:intron 55.0%
TGAAACCGCCTTACTTCGCC+AGG - chr8_2:44162181-44162200 None:intergenic 55.0%
AAGGCGGTTTCATCTGAGCC+TGG + chr8_2:44162189-44162208 Msa1249490:intron 55.0%
! TTCATCTGAGCCTGGTGACG+TGG + chr8_2:44162197-44162216 Msa1249490:intron 55.0%
TGGCAGAAACCCACTGGTGA+AGG + chr8_2:44162217-44162236 Msa1249490:intron 55.0%
GAAGGAAGCTCATCTCGCCA+TGG + chr8_2:44162235-44162254 Msa1249490:intron 55.0%
TGGCGGAATTTGTCTCGCCA+TGG - chr8_2:44162255-44162274 None:intergenic 55.0%
GGGCACACCATTCCCAATGT+CGG - chr8_2:44163218-44163237 None:intergenic 55.0%
CCCCTTTCCCGGTTGCAGAA+TGG - chr8_2:44160454-44160473 None:intergenic 60.0%
CGTCAACCGGTTGATCGGTG+AGG - chr8_2:44160629-44160648 None:intergenic 60.0%
GGGCAAAGGCAATCTCGCCA+TGG + chr8_2:44161978-44161997 Msa1249490:intron 60.0%
CGAGCCACTGGCGAGCTAAA+AGG + chr8_2:44162001-44162020 Msa1249490:intron 60.0%
!!! CTCGCCTTTTAGCTCGCCAG+TGG - chr8_2:44162008-44162027 None:intergenic 60.0%
GAGCAACTCCAGAGAGCTCC+AGG + chr8_2:44162025-44162044 Msa1249490:intron 60.0%
ATCTCTGTGGCGAAGTGGCC+TGG - chr8_2:44162046-44162065 None:intergenic 60.0%
AGGCCACTTCGCCACAGAGA+TGG + chr8_2:44162045-44162064 Msa1249490:intron 60.0%
TGGCCATCTCTGTGGCGAAG+TGG - chr8_2:44162051-44162070 None:intergenic 60.0%
CTTCGCCACAGAGATGGCCA+TGG + chr8_2:44162051-44162070 Msa1249490:intron 60.0%
TCTCGCCATGGCCATCTCTG+TGG - chr8_2:44162059-44162078 None:intergenic 60.0%
CAGCTCGCCAGTATTTCGCC+TGG - chr8_2:44162089-44162108 None:intergenic 60.0%
TGGGTTTCTGCCACGTCACC+AGG - chr8_2:44162210-44162229 None:intergenic 60.0%
GTGACGTGGCAGAAACCCAC+TGG + chr8_2:44162211-44162230 Msa1249490:intron 60.0%
GGCGTTGCCCACAAAGTCTG+TGG - chr8_2:44164880-44164899 None:intergenic 60.0%
ATCTCGCCATGGCGAGCCAC+TGG + chr8_2:44161989-44162008 Msa1249490:intron 65.0%
CGAAGTGGCCTGGAGCTCTC+TGG - chr8_2:44162036-44162055 None:intergenic 65.0%
AGCTCGCCAGTGGCTCGCCA+TGG - chr8_2:44161998-44162017 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 44159970 44165951 44159970 ID=Msa1249490;Name=Msa1249490
chr8_2 mRNA 44159970 44165951 44159970 ID=Msa1249490-mRNA-1;Parent=Msa1249490;Name=Msa1249490-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|2|0|499
chr8_2 exon 44159970 44160704 44159970 ID=Msa1249490-mRNA-1:exon:13430;Parent=Msa1249490-mRNA-1
chr8_2 exon 44165187 44165951 44165187 ID=Msa1249490-mRNA-1:exon:13431;Parent=Msa1249490-mRNA-1
chr8_2 CDS 44159970 44160704 44159970 ID=Msa1249490-mRNA-1:cds;Parent=Msa1249490-mRNA-1
chr8_2 CDS 44165187 44165951 44165187 ID=Msa1249490-mRNA-1:cds;Parent=Msa1249490-mRNA-1
Gene Sequence

>Msa1249490

ATGGCACCTAAGAATCAACAGAAAGCATCAGCTTCTGCCAGAGGCAAGAGAAAGCAATCTGAAGCTGAACCGACTCCAAGACCTTATGACGAGCACAGATTCTTTACTGTTGCTCACCAGGACCAGTATCACGAACTATGTAAACGGAAGCTTTGGCATGACAAGCAGTTCCAAATCTCAGCTGAAGGGAAATACAAAGTGCTTGCTGCCATCATTCAGAAGCGAAAATGGGAACAACTGGTTGCCCCTCACCCTCAAATCAACACTGAAATCGTGCGTGAGTTCTATGCGAACGCCATGCCTTTAGAGGGGGAAGAATTTAGCTTCAAAACCATGATACGGGGTAGGGTGATCACCTTTGATCGCCAAGGCATTAATGACTACCTTGGGAAACCTTACAAACTCAAAACCCCTGATGAACTCTGTCCATTTCACCTTCAACAAAACAAAGGGAATTGGGACCATTCACTCATTCAAGCAACCATTCTGCAACCGGGAAAGGGGTATGAGACAAGTGTGACCGGGCGTGACACAGTTAAGAAGTGTAACATGACCCCCATTGCTCAAACTATCTTGAAATTGATCCTGTTCAATATCAAACCCAAGAGCCACCTTTCCACTTGCACCATTGATATCCCACCCCTCATCTACTACATCCTCACCGATCAACCGGTTGACGTTGCGAGGATCATTGCTGAAGAACTAAAGGATGTTGCTTTAAGCAACAAAGAGAGGCTTCAAGAAACCATAGTTGAAACCTTCCATATTGTTAATTCAAAGGATGGTTCCATGCTAGATTTTTTGAATAATGATTATTACCTTAAGTTGATTCAACTTGGTTTGATTTATATATTTCCTCTCCATGTTCTAGAATTTGGAACTGCAATTATTACTATAGATTTAGCTTCAAAGATAGGTTCACAACAAGAGAAGAAAATGAACCTTAAGGATATGATTGACAAACCTCTTGATTCATCAAAATTGAGAGGCTCATTTCTTACTTTTATATATGTTGTTTTCTTGACAACTACTCATCAACTTGGATTACTATGGATAGTTATAAATTGTCATTTTTACTTGAAGGATTTGAGTTTTGTGGTTTTTGCATTGATTTGTAGCATGTTGTTTGCAAAGTTGTTAAAGATGTATTTGGAATGGTGTTCTATGTGGAACATGAGTCTTGTAATTTCAATACTCGAAGGGATTTATGGTATTGATGCATTAGTACTTTCACTTAATTTTAGCAGAGGGTGCCAAAGAAAAGGGCTTTTTCTGATGTTGATTTTCTTTGCATGGGGACAGTTTTTGAGATTTTTTTGCTACTATGTTGGAGACTATGAACAAGGAAATGGAATTTTCATACAAGTTGGATTGTTCTGCATGGTGATTCCATTGAAATGGGTGGTTTTTATGATCTATTTTCATGATTGCAAGGAGAGATGTTTGGAAAAGAAGATGGATGAGGAATTAGGCAAAGATGTAAGAGGGGTGAGTGAGTGA

Protein sequence

>Msa1249490

MAPKNQQKASASARGKRKQSEAEPTPRPYDEHRFFTVAHQDQYHELCKRKLWHDKQFQISAEGKYKVLAAIIQKRKWEQLVAPHPQINTEIVREFYANAMPLEGEEFSFKTMIRGRVITFDRQGINDYLGKPYKLKTPDELCPFHLQQNKGNWDHSLIQATILQPGKGYETSVTGRDTVKKCNMTPIAQTILKLILFNIKPKSHLSTCTIDIPPLIYYILTDQPVDVARIIAEELKDVALSNKERLQETIVETFHIVNSKDGSMLDFLNNDYYLKLIQLGLIYIFPLHVLEFGTAIITIDLASKIGSQQEKKMNLKDMIDKPLDSSKLRGSFLTFIYVVFLTTTHQLGLLWIVINCHFYLKDLSFVVFALICSMLFAKLLKMYLEWCSMWNMSLVISILEGIYGIDALVLSLNFSRGCQRKGLFLMLIFFAWGQFLRFFCYYVGDYEQGNGIFIQVGLFCMVIPLKWVVFMIYFHDCKERCLEKKMDEELGKDVRGVSE*