AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479340 MtrunA17_Chr3g0142161 88.072 721 24 3 1 674 1 706 0.0 1255
Msa0479340 MtrunA17_Chr4g0035561 68.290 801 207 2 1 755 14 813 0.0 1120
Msa0479340 MtrunA17_Chr2g0325991 58.085 804 289 4 1 757 11 813 0.0 957
Msa0479340 MtrunA17_Chr4g0030121 57.816 806 290 4 1 757 11 815 0.0 947
Msa0479340 MtrunA17_Chr3g0142151 92.857 84 6 0 674 757 2 85 6.50e-39 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479340 AT4G39080.1 68.290 801 206 3 1 754 14 813 0.0 1117
Msa0479340 AT2G21410.1 67.541 801 213 2 1 755 15 814 0.0 1113
Msa0479340 AT2G28520.1 57.497 807 293 4 1 757 11 817 0.0 948

Find 141 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTTCCTATCTTCGTTTA+TGG 0.080046 3_3:-84299083 Msa0479340:CDS
TCCATTCCGTTTGAACTATT+TGG 0.108443 3_3:-84300114 Msa0479340:CDS
GCGTAAGTTGCGTTTATTTA+AGG 0.157306 3_3:-84302377 Msa0479340:CDS
GGGATGGATGTAAATGAAAA+TGG 0.180474 3_3:+84298559 None:intergenic
TTCTATTGATCTAGAAAATT+TGG 0.182048 3_3:-84302302 Msa0479340:CDS
GTATTCTTGAACAGCCTATT+TGG 0.197201 3_3:-84299668 Msa0479340:CDS
TTCAGTAAAGCAGATAAAAT+TGG 0.203541 3_3:-84301775 Msa0479340:CDS
CACTCCTCATAATTGTAAAA+TGG 0.223248 3_3:-84299637 Msa0479340:CDS
CGCTGTAATGTTTGGTGATT+GGG 0.234878 3_3:-84300396 Msa0479340:CDS
CCTATTTAGAATGTGATAAA+TGG 0.234945 3_3:+84300993 None:intergenic
GGCTGTTCAAGAATACAATT+TGG 0.237322 3_3:+84299675 None:intergenic
TATTGACTGTCCATTATTAA+TGG 0.242494 3_3:-84301901 Msa0479340:CDS
TGCAACTGTTGGTGTCTTAC+TGG 0.245600 3_3:-84298677 Msa0479340:CDS
AATGAAGATGTCAATTCTAT+TGG 0.256189 3_3:-84299872 Msa0479340:CDS
TTCTTACTTGAAAGAACTTT+TGG 0.258014 3_3:+84299522 None:intergenic
CCATTTATCACATTCTAAAT+AGG 0.271921 3_3:-84300993 Msa0479340:CDS
TCTAAGTCCAACAGATGATT+TGG 0.275930 3_3:-84299567 Msa0479340:CDS
ATTTAAGGAGCAAATGAAAA+AGG 0.304205 3_3:-84302362 Msa0479340:CDS
ATACATCTTTGAACTGAAAA+AGG 0.307287 3_3:+84302832 None:intergenic
AGCAATTTGTTGCAAACAAT+TGG 0.307815 3_3:-84301219 Msa0479340:CDS
TTATAACCGGTCTTGTTACT+AGG 0.312976 3_3:-84301749 Msa0479340:CDS
ATACAATTTGGGGAACAAAT+TGG 0.314145 3_3:+84299687 None:intergenic
CTCCGTGTGCCATGCCATTT+AGG 0.315514 3_3:+84299922 None:intergenic
TCATGGCATATGCCTATTAT+TGG 0.318641 3_3:-84300372 Msa0479340:CDS
AGCTTCCTATCTTCGTTTAT+GGG 0.320291 3_3:-84299082 Msa0479340:CDS
TCAGTAAAGCAGATAAAATT+GGG 0.320724 3_3:-84301774 Msa0479340:CDS
CAAGAAATTGTAGACGCATA+TGG 0.321767 3_3:-84300678 Msa0479340:CDS
CATTTGGCGTAGATCCTAAA+TGG 0.329997 3_3:-84299936 Msa0479340:CDS
CTTTAATTCTACAATTCTTT+CGG 0.330426 3_3:+84301272 None:intergenic
ACACACCAGGATTTGCTTCC+TGG 0.331410 3_3:+84300447 None:intergenic
TCGCTGTAATGTTTGGTGAT+TGG 0.333056 3_3:-84300397 Msa0479340:CDS
CTCCCTCGTAAAACTTGTTC+TGG 0.335494 3_3:+84298599 None:intergenic
ATTTGAGCAGTGGAATCTTC+TGG 0.337268 3_3:-84301190 Msa0479340:intron
ATATGATTCCAAGATTCATT+TGG 0.339853 3_3:+84299842 None:intergenic
AACACCATTGTTCTCATTGC+TGG 0.348957 3_3:-84298718 Msa0479340:CDS
AATAGAAAGTTGCCAATAAT+AGG 0.358575 3_3:+84300360 None:intergenic
GCTGTTCAAGAATACAATTT+GGG 0.359364 3_3:+84299676 None:intergenic
TATACATGTTCCATTAATAA+TGG 0.365815 3_3:+84301891 None:intergenic
AGGATTTGCTTCCTGGTACT+TGG 0.373271 3_3:+84300454 None:intergenic
TATGATTCCAAGATTCATTT+GGG 0.373807 3_3:+84299843 None:intergenic
ATCTCTTACCTTGGCGATCT+CGG 0.380443 3_3:-84302855 Msa0479340:CDS
TTCAGGGATGCTACTACAAT+AGG 0.384365 3_3:-84299985 Msa0479340:intron
TCAAGTAGAGGCAATAGTTC+AGG 0.392420 3_3:-84300763 Msa0479340:CDS
ATAAAATTGGGGTTTATAAC+CGG 0.396630 3_3:-84301762 Msa0479340:CDS
CTAAGTCCAACAGATGATTT+GGG 0.404472 3_3:-84299566 Msa0479340:CDS
TCTCTCGTTGACCATGTTGA+TGG 0.411005 3_3:+84302328 None:intergenic
TGCATGCTTTGAGACTTCAT+TGG 0.411142 3_3:-84298630 Msa0479340:CDS
ATCAAATAGGTTAAAAGATG+TGG 0.412168 3_3:-84302409 Msa0479340:intron
GGTGAAAACCAGCTCTTTGT+TGG 0.412927 3_3:-84299545 Msa0479340:CDS
ATGAAGATGTCAATTCTATT+GGG 0.414653 3_3:-84299871 Msa0479340:CDS
TTAGGTTATATTACTATTGT+TGG 0.418965 3_3:-84299419 Msa0479340:intron
GCATGCTTTGAGACTTCATT+GGG 0.419031 3_3:-84298629 Msa0479340:CDS
GGAGTGAAAGATAGCCAAAT+AGG 0.420903 3_3:+84299654 None:intergenic
GAATTCTATTTCGTGCTACT+AGG 0.420984 3_3:-84301704 Msa0479340:CDS
AAGAAATTGTAGACGCATAT+GGG 0.426376 3_3:-84300677 Msa0479340:intron
ATTCTATTGTATGTATAAGT+TGG 0.428985 3_3:+84299130 None:intergenic
ACTTGGAGACATATTAGAAA+TGG 0.433033 3_3:-84300214 Msa0479340:CDS
GGAGTATCCCAAATGAATCT+TGG 0.435333 3_3:-84299850 Msa0479340:CDS
GATCGATGAGCCGATTCAAT+TGG 0.436497 3_3:+84302879 None:intergenic
ATGTTGTTTCTTCAAGAGAA+AGG 0.437840 3_3:+84299360 None:intergenic
ATTGATTATTCCAATTGAAT+CGG 0.439640 3_3:-84302889 Msa0479340:CDS
TCAATAGACCCTTCAAAAGT+TGG 0.440735 3_3:+84301918 None:intergenic
GTGCGCGACACTTATCCATT+TGG 0.445671 3_3:-84299952 Msa0479340:CDS
AATTCTATTTCGTGCTACTA+GGG 0.446400 3_3:-84301703 Msa0479340:CDS
TCAAATAGGTTAAAAGATGT+GGG 0.447595 3_3:-84302408 Msa0479340:intron
GTTGAACTTCAAGCTCTCTC+TGG 0.448824 3_3:+84301940 None:intergenic
CCTACTCTTTGATCTACAAT+GGG 0.450668 3_3:-84299230 Msa0479340:CDS
TGTTGGTGTCTTACTGGTAA+TGG 0.451038 3_3:-84298671 Msa0479340:CDS
CATGTTCTAGATCCTTTGTC+AGG 0.453259 3_3:-84301645 Msa0479340:CDS
AACTTCAAGCTCTCTCTGGC+GGG 0.460694 3_3:+84301944 None:intergenic
TTCTTCAAGAGAAAGGGCTT+TGG 0.461252 3_3:+84299367 None:intergenic
GAGGGCCCATAAACGAAGAT+AGG 0.461762 3_3:+84299077 None:intergenic
TTAAAGACAACCATTGATGT+AGG 0.463823 3_3:-84301255 Msa0479340:CDS
TGTTGTTAATTGCAGAAACT+TGG 0.465763 3_3:-84300231 Msa0479340:intron
ATCTTCGTTTATGGGCCCTC+AGG 0.469823 3_3:-84299074 Msa0479340:intron
GGATGCTACTACAATAGGTT+TGG 0.469912 3_3:-84299980 Msa0479340:CDS
TTGAAAACAACATAAACATA+TGG 0.470037 3_3:-84299795 Msa0479340:intron
ATGTTTGGTGATTGGGGTCA+TGG 0.475527 3_3:-84300389 Msa0479340:CDS
CATTTAGGATCTACGCCAAA+TGG 0.477514 3_3:+84299937 None:intergenic
CGCTGAAATCAAACTCCTCA+TGG 0.478028 3_3:+84299166 None:intergenic
CACCAAACATTACAGCGAAA+AGG 0.483279 3_3:+84300402 None:intergenic
TGTTGTTTCTTCAAGAGAAA+GGG 0.483549 3_3:+84299361 None:intergenic
CATCGATCCATCTCTTACCT+TGG 0.485763 3_3:-84302864 Msa0479340:CDS
AAGCTCTCTCTGGCGGGTTG+CGG 0.488042 3_3:+84301950 None:intergenic
CTATTTGGACAATCTGCCTA+TGG 0.489161 3_3:-84300099 Msa0479340:CDS
GAAGCATAGGTCTGTTGGAA+TGG 0.489379 3_3:+84302638 None:intergenic
GGATGGATGTAAATGAAAAT+GGG 0.493133 3_3:+84298560 None:intergenic
TCCAAATAGTTCAAACGGAA+TGG 0.495363 3_3:+84300113 None:intergenic
AATGTCTCCTTGCAGAAGGC+TGG 0.495741 3_3:-84300948 Msa0479340:CDS
TGAATTAATCTCAATTAGCT+CGG 0.496624 3_3:+84302168 None:intergenic
GATTGTCCAAATAGTTCAAA+CGG 0.500166 3_3:+84300108 None:intergenic
AGATCCTTTGTCAGGAGAGA+AGG 0.502764 3_3:-84301637 Msa0479340:intron
CCTGTGAAGCATAGGTCTGT+TGG 0.509382 3_3:+84302633 None:intergenic
GAGATATATTATTATGATGA+TGG 0.510661 3_3:-84300181 Msa0479340:CDS
GAACTTCAAGCTCTCTCTGG+CGG 0.513046 3_3:+84301943 None:intergenic
TATTGATCTAGAAAATTTGG+AGG 0.515471 3_3:-84302299 Msa0479340:intron
TATAACCGGTCTTGTTACTA+GGG 0.516391 3_3:-84301748 Msa0479340:CDS
TGTAGGATCGCGACATCCAT+AGG 0.523119 3_3:+84300083 None:intergenic
AAGTACCAGGAAGCAAATCC+TGG 0.525177 3_3:-84300452 Msa0479340:CDS
TCCTACTCTTTGATCTACAA+TGG 0.526141 3_3:-84299231 Msa0479340:CDS
CCAACAGACCTATGCTTCAC+AGG 0.533446 3_3:-84302633 Msa0479340:intron
ATAATTGTAAAATGGTGCAC+TGG 0.535769 3_3:-84299629 Msa0479340:CDS
CGAAATAGAATTCTTTCGAA+AGG 0.537677 3_3:+84301714 None:intergenic
CATACAATAGAATTTGTGCT+TGG 0.540924 3_3:-84299120 Msa0479340:CDS
TTGTGAATACCACGTGACTC+TGG 0.541621 3_3:+84299192 None:intergenic
AAGCATAGGTCTGTTGGAAT+GGG 0.545226 3_3:+84302639 None:intergenic
ATGATGCAAACCTACATCAA+TGG 0.557963 3_3:+84301245 None:intergenic
TGACAGAATTGCCAAGTACC+AGG 0.558993 3_3:-84300465 Msa0479340:intron
ATCAATTGAACAAGTTGCAT+AGG 0.566474 3_3:+84302906 None:intergenic
TTGGATATCAATTTGAGCAG+TGG 0.566788 3_3:-84301200 Msa0479340:CDS
TGGCACTCATTTCAGTACCA+TGG 0.568747 3_3:-84299399 Msa0479340:CDS
TATAGGTACCTGTGAAGCAT+AGG 0.569643 3_3:+84302625 None:intergenic
AGTATTGATGCGAGCAACCG+TGG 0.569989 3_3:-84300796 Msa0479340:CDS
AACATTACAGCGAAAAGGAA+AGG 0.574650 3_3:+84300407 None:intergenic
TACTTGAGAGTTACAGTCCA+CGG 0.579726 3_3:+84300779 None:intergenic
GGCTTTGGTAATAACATCCA+TGG 0.580963 3_3:+84299382 None:intergenic
TCAACATGGTCAACGAGAGA+TGG 0.582556 3_3:-84302325 Msa0479340:CDS
AAGAAATGTCTCCTTGCAGA+AGG 0.583352 3_3:-84300952 Msa0479340:CDS
ATTCTATTTCGTGCTACTAG+GGG 0.585573 3_3:-84301702 Msa0479340:CDS
ATCCTAAATGGCATGGCACA+CGG 0.589895 3_3:-84299924 Msa0479340:CDS
AAAATGGTGCACTGGATCAC+AGG 0.590090 3_3:-84299621 Msa0479340:CDS
CCACGTGACTCTGGTTCAAG+AGG 0.590260 3_3:+84299201 None:intergenic
GGCGTAGATCCTAAATGGCA+TGG 0.594393 3_3:-84299931 Msa0479340:CDS
AATCAAAACCACCTGCATGT+AGG 0.594477 3_3:+84300066 None:intergenic
GAGATCGCCAAGGTAAGAGA+TGG 0.597950 3_3:+84302857 None:intergenic
CCATCCTCGTCATTAAGGGA+TGG 0.611017 3_3:+84298543 None:intergenic
CAGTAAAGCAGATAAAATTG+GGG 0.611660 3_3:-84301773 Msa0479340:CDS
GATGTCGCGATCCTACATGC+AGG 0.623019 3_3:-84300077 Msa0479340:intron
GTAACCTTCTCTCCTGACAA+AGG 0.627927 3_3:+84301633 None:intergenic
CAAATATATCTCCATCAACA+TGG 0.637172 3_3:-84302339 Msa0479340:CDS
CAAATAGGTTAAAAGATGTG+GGG 0.638472 3_3:-84302407 Msa0479340:intron
GCTGTAATGTTTGGTGATTG+GGG 0.649165 3_3:-84300395 Msa0479340:CDS
CCCATTGTAGATCAAAGAGT+AGG 0.649812 3_3:+84299230 None:intergenic
GTGATGATTGTGTACACACC+AGG 0.653396 3_3:+84300434 None:intergenic
GGACTGTAACTCTCAAGTAG+AGG 0.654482 3_3:-84300775 Msa0479340:CDS
CAGGACACCAGCCTTCTGCA+AGG 0.658702 3_3:+84300941 None:intergenic
CTGTTCAAGAATACAATTTG+GGG 0.666631 3_3:+84299677 None:intergenic
CCTCTTGAACCAGAGTCACG+TGG 0.672253 3_3:-84299201 Msa0479340:CDS
AATGCCAGCAATGAGAACAA+TGG 0.675059 3_3:+84298714 None:intergenic
TGAGGAGTTTGATTTCAGCG+AGG 0.723862 3_3:-84299163 Msa0479340:CDS
CTACTCTTTGATCTACAATG+GGG 0.740978 3_3:-84299229 Msa0479340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTATTATATTTTATTC+GGG - chr3_3:84299951-84299970 Msa0479340:CDS 10.0%
!!! TTTTAACCTATTTGATAAAA+CGG + chr3_3:84299069-84299088 None:intergenic 15.0%
!! TAAAATGGTAAAAACAAATA+AGG + chr3_3:84299477-84299496 None:intergenic 15.0%
!!! TTATTTGTTTTTACCATTTT+AGG - chr3_3:84299476-84299495 Msa0479340:intron 15.0%
!!! AAATAAACTACAAAGTTTTA+GGG + chr3_3:84299617-84299636 None:intergenic 15.0%
!!! AAAATAAACTACAAAGTTTT+AGG + chr3_3:84299618-84299637 None:intergenic 15.0%
!! AAAATTTAATTCACATTTCA+AGG + chr3_3:84300590-84300609 None:intergenic 15.0%
!!! ATTCCTTTAGTTTTAAATTA+TGG - chr3_3:84300884-84300903 Msa0479340:intron 15.0%
!!! AAACCATAATTTAAAACTAA+AGG + chr3_3:84300890-84300909 None:intergenic 15.0%
!!! TAGTTTTAAATTATGGTTTA+TGG - chr3_3:84300891-84300910 Msa0479340:intron 15.0%
!!! ATCAATGAAAAAAAGTTTTA+CGG - chr3_3:84301150-84301169 Msa0479340:intron 15.0%
!!! CTAAATATTTTCTAGTTTAT+TGG - chr3_3:84301207-84301226 Msa0479340:CDS 15.0%
!!! ATATTTATTATCCTTTTTTC+AGG - chr3_3:84301480-84301499 Msa0479340:intron 15.0%
!!! TATTTATTATCCTTTTTTCA+GGG - chr3_3:84301481-84301500 Msa0479340:intron 15.0%
!! ATAAAAAAGATATAACTTCA+AGG + chr3_3:84302541-84302560 None:intergenic 15.0%
!! ATTGATTATTCCAATTGAAT+CGG - chr3_3:84298593-84298612 Msa0479340:CDS 20.0%
!!! AAAGAAGTACTTAATTGTTT+TGG + chr3_3:84298953-84298972 None:intergenic 20.0%
!! TTCTATTGATCTAGAAAATT+TGG - chr3_3:84299180-84299199 Msa0479340:CDS 20.0%
!!! AATTTTCATATCTTTTCTAC+CGG - chr3_3:84299223-84299242 Msa0479340:CDS 20.0%
!! TATACATGTTCCATTAATAA+TGG + chr3_3:84299594-84299613 None:intergenic 20.0%
!! CTTTAATTCTACAATTCTTT+CGG + chr3_3:84300213-84300232 None:intergenic 20.0%
!! ATATAGTTATAAACTATGCA+TGG + chr3_3:84300364-84300383 None:intergenic 20.0%
!! AAAAATGTTAGTGCAAAAAT+AGG + chr3_3:84300772-84300791 None:intergenic 20.0%
!! AAAAAATGGCATGAAAAATT+TGG + chr3_3:84300851-84300870 None:intergenic 20.0%
!!! ACATATTAGAAATGGTTTTT+GGG - chr3_3:84301276-84301295 Msa0479340:CDS 20.0%
!! GAGATATATTATTATGATGA+TGG - chr3_3:84301301-84301320 Msa0479340:intron 20.0%
!!! TATGTTGTTTTCAAAGTATT+TGG + chr3_3:84301681-84301700 None:intergenic 20.0%
!! TTGAAAACAACATAAACATA+TGG - chr3_3:84301687-84301706 Msa0479340:CDS 20.0%
!! TAACTTTAATTAGTTGAATG+TGG - chr3_3:84301723-84301742 Msa0479340:CDS 20.0%
!!! TGTGTACTATTAAATTTGTT+AGG - chr3_3:84302045-84302064 Msa0479340:intron 20.0%
!! TTAGGTTATATTACTATTGT+TGG - chr3_3:84302063-84302082 Msa0479340:intron 20.0%
!! ATTCTATTGTATGTATAAGT+TGG + chr3_3:84302355-84302374 None:intergenic 20.0%
!! CAAAGAAAAATATGAATGAT+AGG + chr3_3:84302580-84302599 None:intergenic 20.0%
!!! CTATCATTCATATTTTTCTT+TGG - chr3_3:84302578-84302597 Msa0479340:intron 20.0%
!!! TATTTTTCTTTGGTGTTTTT+TGG - chr3_3:84302588-84302607 Msa0479340:intron 20.0%
! ATACATCTTTGAACTGAAAA+AGG + chr3_3:84298653-84298672 None:intergenic 25.0%
!!! TTTTTCAGTTCAAAGATGTA+TGG - chr3_3:84298652-84298671 Msa0479340:CDS 25.0%
! ATAAAGAATACAAAGTGAGA+AGG + chr3_3:84298701-84298720 None:intergenic 25.0%
! TATGCATACATAGATGTTAT+AGG + chr3_3:84298877-84298896 None:intergenic 25.0%
! ATGCATAGTTGCATTTAAAA+AGG - chr3_3:84298890-84298909 Msa0479340:intron 25.0%
! ATCAAATAGGTTAAAAGATG+TGG - chr3_3:84299073-84299092 Msa0479340:intron 25.0%
! TCAAATAGGTTAAAAGATGT+GGG - chr3_3:84299074-84299093 Msa0479340:intron 25.0%
! ATTTAAGGAGCAAATGAAAA+AGG - chr3_3:84299120-84299139 Msa0479340:CDS 25.0%
! TATTGATCTAGAAAATTTGG+AGG - chr3_3:84299183-84299202 Msa0479340:CDS 25.0%
! TGAATTAATCTCAATTAGCT+CGG + chr3_3:84299317-84299336 None:intergenic 25.0%
! GTATAATTAACCATATAGCT+TGG - chr3_3:84299400-84299419 Msa0479340:CDS 25.0%
!!! TTGTTTTTACCATTTTAGGT+TGG - chr3_3:84299480-84299499 Msa0479340:intron 25.0%
!!! TGTTTTTACCATTTTAGGTT+GGG - chr3_3:84299481-84299500 Msa0479340:intron 25.0%
!! TATTGACTGTCCATTATTAA+TGG - chr3_3:84299581-84299600 Msa0479340:CDS 25.0%
!!! GCTTATAAATTTTGACTTGT+AGG - chr3_3:84299671-84299690 Msa0479340:CDS 25.0%
! TTCAGTAAAGCAGATAAAAT+TGG - chr3_3:84299707-84299726 Msa0479340:intron 25.0%
! TCAGTAAAGCAGATAAAATT+GGG - chr3_3:84299708-84299727 Msa0479340:intron 25.0%
! ATAAAATTGGGGTTTATAAC+CGG - chr3_3:84299720-84299739 Msa0479340:intron 25.0%
!! ATTAATCTTCTACCTTTTAC+AGG - chr3_3:84299917-84299936 Msa0479340:CDS 25.0%
!! CATTTTTATGAACCTGTAAA+AGG + chr3_3:84299932-84299951 None:intergenic 25.0%
!!! AACAAAATTTGTGTTGCTTT+TGG - chr3_3:84299996-84300015 Msa0479340:intron 25.0%
! TATTCTACATAGTATGAATG+TGG - chr3_3:84300139-84300158 Msa0479340:CDS 25.0%
! AAACCTGGAAATTTCATAAT+GGG + chr3_3:84300190-84300209 None:intergenic 25.0%
!! TTTTCATCAATAGTTGCAAA+AGG - chr3_3:84300460-84300479 Msa0479340:CDS 25.0%
!! CCTATTTAGAATGTGATAAA+TGG + chr3_3:84300492-84300511 None:intergenic 25.0%
! CCATTTATCACATTCTAAAT+AGG - chr3_3:84300489-84300508 Msa0479340:intron 25.0%
! TGCAGAGATAATGTAAAAAA+TGG + chr3_3:84300865-84300884 None:intergenic 25.0%
! AATAGAAAGTTGCCAATAAT+AGG + chr3_3:84301125-84301144 None:intergenic 25.0%
! ACATCAAATAAAACTACAGT+TGG + chr3_3:84301234-84301253 None:intergenic 25.0%
!! GACATATTAGAAATGGTTTT+TGG - chr3_3:84301275-84301294 Msa0479340:CDS 25.0%
!! CATATTAGAAATGGTTTTTG+GGG - chr3_3:84301277-84301296 Msa0479340:CDS 25.0%
!!! ATATTAGAAATGGTTTTTGG+GGG - chr3_3:84301278-84301297 Msa0479340:CDS 25.0%
! TATGATACTCGTATATAACA+TGG + chr3_3:84301463-84301482 None:intergenic 25.0%
!! ATTTTAAGCGAGTTAAGAAA+TGG + chr3_3:84301593-84301612 None:intergenic 25.0%
! AATGAAGATGTCAATTCTAT+TGG - chr3_3:84301610-84301629 Msa0479340:intron 25.0%
! ATGAAGATGTCAATTCTATT+GGG - chr3_3:84301611-84301630 Msa0479340:intron 25.0%
! TATGATTCCAAGATTCATTT+GGG + chr3_3:84301642-84301661 None:intergenic 25.0%
! ATATGATTCCAAGATTCATT+TGG + chr3_3:84301643-84301662 None:intergenic 25.0%
!! TTCTTACTTGAAAGAACTTT+TGG + chr3_3:84301963-84301982 None:intergenic 25.0%
! AATAGTACACAATTTAGATG+TGG + chr3_3:84302036-84302055 None:intergenic 25.0%
! GGTAATAAAAATTAGAGTCA+GGG + chr3_3:84302204-84302223 None:intergenic 25.0%
! AGGTAATAAAAATTAGAGTC+AGG + chr3_3:84302205-84302224 None:intergenic 25.0%
ATCAATTGAACAAGTTGCAT+AGG + chr3_3:84298579-84298598 None:intergenic 30.0%
TTGTATTCTTTATGACGCTT+CGG - chr3_3:84298708-84298727 Msa0479340:CDS 30.0%
! ACTGATTTACTAGACTAGAT+TGG - chr3_3:84299035-84299054 Msa0479340:intron 30.0%
! AGCTTACCGTTTTATCAAAT+AGG - chr3_3:84299060-84299079 Msa0479340:intron 30.0%
CAAATAGGTTAAAAGATGTG+GGG - chr3_3:84299075-84299094 Msa0479340:CDS 30.0%
CAAATATATCTCCATCAACA+TGG - chr3_3:84299143-84299162 Msa0479340:CDS 30.0%
TCTTCTCTAACCTATATAAG+GGG + chr3_3:84299431-84299450 None:intergenic 30.0%
GTCTTCTCTAACCTATATAA+GGG + chr3_3:84299432-84299451 None:intergenic 30.0%
TGTCTTCTCTAACCTATATA+AGG + chr3_3:84299433-84299452 None:intergenic 30.0%
!!! GTTTTTACCATTTTAGGTTG+GGG - chr3_3:84299482-84299501 Msa0479340:intron 30.0%
! AAGTTCAACCAACTTTTGAA+GGG - chr3_3:84299556-84299575 Msa0479340:CDS 30.0%
CAGTAAAGCAGATAAAATTG+GGG - chr3_3:84299709-84299728 Msa0479340:intron 30.0%
CGAAATAGAATTCTTTCGAA+AGG + chr3_3:84299771-84299790 None:intergenic 30.0%
! AATTCTATTTCGTGCTACTA+GGG - chr3_3:84299779-84299798 Msa0479340:intron 30.0%
GGTAGACAAAATATTATCCT+TGG - chr3_3:84300076-84300095 Msa0479340:intron 30.0%
TTTCCCATTATGAAATTTCC+AGG - chr3_3:84300184-84300203 Msa0479340:CDS 30.0%
GAAACCTGGAAATTTCATAA+TGG + chr3_3:84300191-84300210 None:intergenic 30.0%
TTAAAGACAACCATTGATGT+AGG - chr3_3:84300227-84300246 Msa0479340:intron 30.0%
!! AGCAATTTGTTGCAAACAAT+TGG - chr3_3:84300263-84300282 Msa0479340:intron 30.0%
! CTTTTTGAATCTGCATAGAT+AGG + chr3_3:84300668-84300687 None:intergenic 30.0%
ATGTTAGTGCAAAAATAGGT+GGG + chr3_3:84300768-84300787 None:intergenic 30.0%
AATGTTAGTGCAAAAATAGG+TGG + chr3_3:84300769-84300788 None:intergenic 30.0%
AAGAAATTGTAGACGCATAT+GGG - chr3_3:84300805-84300824 Msa0479340:CDS 30.0%
ATTGTTGCATCTTCATGTAT+GGG - chr3_3:84300956-84300975 Msa0479340:CDS 30.0%
!!! CAGTTAATTTTTTGAGCTCT+AGG + chr3_3:84300989-84301008 None:intergenic 30.0%
! TGAAAAAAAGTTTTACGGTC+AGG - chr3_3:84301155-84301174 Msa0479340:intron 30.0%
TGTTGTTAATTGCAGAAACT+TGG - chr3_3:84301251-84301270 Msa0479340:CDS 30.0%
ACTTGGAGACATATTAGAAA+TGG - chr3_3:84301268-84301287 Msa0479340:CDS 30.0%
!! TATTAGAAATGGTTTTTGGG+GGG - chr3_3:84301279-84301298 Msa0479340:CDS 30.0%
GATTGTCCAAATAGTTCAAA+CGG + chr3_3:84301377-84301396 None:intergenic 30.0%
CTAATTACCTATATTGCTTC+AGG - chr3_3:84301770-84301789 Msa0479340:CDS 30.0%
ATACAATTTGGGGAACAAAT+TGG + chr3_3:84301798-84301817 None:intergenic 30.0%
CTGTTCAAGAATACAATTTG+GGG + chr3_3:84301808-84301827 None:intergenic 30.0%
GCTGTTCAAGAATACAATTT+GGG + chr3_3:84301809-84301828 None:intergenic 30.0%
CACTCCTCATAATTGTAAAA+TGG - chr3_3:84301845-84301864 Msa0479340:intron 30.0%
! TGCACCATTTTACAATTATG+AGG + chr3_3:84301852-84301871 None:intergenic 30.0%
ATAATTGTAAAATGGTGCAC+TGG - chr3_3:84301853-84301872 Msa0479340:intron 30.0%
!! TGTTGTTTCTTCAAGAGAAA+GGG + chr3_3:84302124-84302143 None:intergenic 30.0%
!! ATGTTGTTTCTTCAAGAGAA+AGG + chr3_3:84302125-84302144 None:intergenic 30.0%
AAATTAGAGTCAGGGTTTAA+TGG + chr3_3:84302196-84302215 None:intergenic 30.0%
TTATTACCTTGATTACTCAG+AGG - chr3_3:84302216-84302235 Msa0479340:intron 30.0%
CATACAATAGAATTTGTGCT+TGG - chr3_3:84302362-84302381 Msa0479340:CDS 30.0%
AGGTAAGTTGTTGAAAGTTT+GGG - chr3_3:84302428-84302447 Msa0479340:intron 30.0%
TGTAGATGCAACTAATACAT+GGG + chr3_3:84302479-84302498 None:intergenic 30.0%
ATGTAGATGCAACTAATACA+TGG + chr3_3:84302480-84302499 None:intergenic 30.0%
!! GTTTTTATTTGTGCAACTGT+TGG - chr3_3:84302794-84302813 Msa0479340:intron 30.0%
GGATGGATGTAAATGAAAAT+GGG + chr3_3:84302925-84302944 None:intergenic 30.0%
! GGACACAGATTGGTAATTAA+AGG + chr3_3:84298680-84298699 None:intergenic 35.0%
GCGTAAGTTGCGTTTATTTA+AGG - chr3_3:84299105-84299124 Msa0479340:CDS 35.0%
TAGAAAATTTGGAGGTTGTC+AGG - chr3_3:84299191-84299210 Msa0479340:CDS 35.0%
GAAGAAAAACTGCGTTACAT+GGG + chr3_3:84299262-84299281 None:intergenic 35.0%
TGAAGAAAAACTGCGTTACA+TGG + chr3_3:84299263-84299282 None:intergenic 35.0%
! TGTAACGCAGTTTTTCTTCA+CGG - chr3_3:84299263-84299282 Msa0479340:intron 35.0%
! CAGTTTTTCTTCACGGATAT+AGG - chr3_3:84299270-84299289 Msa0479340:intron 35.0%
!!! GTACAAGCTTGTTTTAGAGA+AGG - chr3_3:84299378-84299397 Msa0479340:CDS 35.0%
AAAAACTCCCCAACCTAAAA+TGG + chr3_3:84299492-84299511 None:intergenic 35.0%
! GAAGTTCAACCAACTTTTGA+AGG - chr3_3:84299555-84299574 Msa0479340:CDS 35.0%
TCAATAGACCCTTCAAAAGT+TGG + chr3_3:84299567-84299586 None:intergenic 35.0%
AGCATCATCAACAAATGACA+TGG + chr3_3:84299654-84299673 None:intergenic 35.0%
!!! TTTTGACTTGTAGGAGACAA+CGG - chr3_3:84299680-84299699 Msa0479340:CDS 35.0%
!! TTATAACCGGTCTTGTTACT+AGG - chr3_3:84299733-84299752 Msa0479340:intron 35.0%
!! TATAACCGGTCTTGTTACTA+GGG - chr3_3:84299734-84299753 Msa0479340:intron 35.0%
! TTTTTCCCTAGTAACAAGAC+CGG + chr3_3:84299742-84299761 None:intergenic 35.0%
! GAATTCTATTTCGTGCTACT+AGG - chr3_3:84299778-84299797 Msa0479340:intron 35.0%
! ATTCTATTTCGTGCTACTAG+GGG - chr3_3:84299780-84299799 Msa0479340:intron 35.0%
TTACTCAAGTCATCTGAGAA+GGG + chr3_3:84300035-84300054 None:intergenic 35.0%
TTTACTCAAGTCATCTGAGA+AGG + chr3_3:84300036-84300055 None:intergenic 35.0%
ACAATTTCAGATGATGACAG+AGG - chr3_3:84300055-84300074 Msa0479340:intron 35.0%
ATGATGCAAACCTACATCAA+TGG + chr3_3:84300240-84300259 None:intergenic 35.0%
TTGGATATCAATTTGAGCAG+TGG - chr3_3:84300282-84300301 Msa0479340:intron 35.0%
TCACATTTCAAGGAAAAACC+TGG + chr3_3:84300580-84300599 None:intergenic 35.0%
CAAGAAATTGTAGACGCATA+TGG - chr3_3:84300804-84300823 Msa0479340:CDS 35.0%
CATTGTTGCATCTTCATGTA+TGG - chr3_3:84300955-84300974 Msa0479340:CDS 35.0%
AACATTACAGCGAAAAGGAA+AGG + chr3_3:84301078-84301097 None:intergenic 35.0%
! TTCCTTTTCGCTGTAATGTT+TGG - chr3_3:84301078-84301097 Msa0479340:intron 35.0%
TCATGGCATATGCCTATTAT+TGG - chr3_3:84301110-84301129 Msa0479340:intron 35.0%
! CACTTTTCTCAATCTACACT+GGG - chr3_3:84301324-84301343 Msa0479340:intron 35.0%
TCCATTCCGTTTGAACTATT+TGG - chr3_3:84301368-84301387 Msa0479340:intron 35.0%
TCCAAATAGTTCAAACGGAA+TGG + chr3_3:84301372-84301391 None:intergenic 35.0%
TTTACGAGTATCTGCCTATT+TGG - chr3_3:84301437-84301456 Msa0479340:intron 35.0%
CGTATATAACATGGCCAAAT+AGG + chr3_3:84301454-84301473 None:intergenic 35.0%
GGCTGTTCAAGAATACAATT+TGG + chr3_3:84301810-84301829 None:intergenic 35.0%
GTATTCTTGAACAGCCTATT+TGG - chr3_3:84301814-84301833 Msa0479340:intron 35.0%
TCTAAGTCCAACAGATGATT+TGG - chr3_3:84301915-84301934 Msa0479340:CDS 35.0%
CTAAGTCCAACAGATGATTT+GGG - chr3_3:84301916-84301935 Msa0479340:CDS 35.0%
! TTTTCACCCAAATCATCTGT+TGG + chr3_3:84301925-84301944 None:intergenic 35.0%
TTTATGCCTCTGAGTAATCA+AGG + chr3_3:84302225-84302244 None:intergenic 35.0%
TCCTACTCTTTGATCTACAA+TGG - chr3_3:84302251-84302270 Msa0479340:intron 35.0%
CCTACTCTTTGATCTACAAT+GGG - chr3_3:84302252-84302271 Msa0479340:intron 35.0%
CTACTCTTTGATCTACAATG+GGG - chr3_3:84302253-84302272 Msa0479340:intron 35.0%
TGGTATTCACAAAAACCATG+AGG - chr3_3:84302301-84302320 Msa0479340:CDS 35.0%
AGCTTCCTATCTTCGTTTAT+GGG - chr3_3:84302400-84302419 Msa0479340:CDS 35.0%
ACTTTCAACAACTTACCTGA+GGG + chr3_3:84302426-84302445 None:intergenic 35.0%
AACTTTCAACAACTTACCTG+AGG + chr3_3:84302427-84302446 None:intergenic 35.0%
CAGGTAAGTTGTTGAAAGTT+TGG - chr3_3:84302427-84302446 Msa0479340:intron 35.0%
TGTATTTGTGTGACTGATGT+AGG - chr3_3:84302735-84302754 Msa0479340:intron 35.0%
! TTCCAGAACAAGTTTTACGA+GGG - chr3_3:84302881-84302900 Msa0479340:CDS 35.0%
GGGATGGATGTAAATGAAAA+TGG + chr3_3:84302926-84302945 None:intergenic 35.0%
AAAGTGAGAAGGACACAGAT+TGG + chr3_3:84298690-84298709 None:intergenic 40.0%
AAGCATAGGTCTGTTGGAAT+GGG + chr3_3:84298846-84298865 None:intergenic 40.0%
TATAGGTACCTGTGAAGCAT+AGG + chr3_3:84298860-84298879 None:intergenic 40.0%
! CTTGGTCTTTCCCCTTATAT+AGG - chr3_3:84299418-84299437 Msa0479340:CDS 40.0%
!!! GGGAAATGTTTTTCTGAAGC+AGG - chr3_3:84299800-84299819 Msa0479340:CDS 40.0%
! CATGTTCTAGATCCTTTGTC+AGG - chr3_3:84299837-84299856 Msa0479340:CDS 40.0%
TATCAGTTGAGCTCAATTGC+AGG + chr3_3:84300113-84300132 None:intergenic 40.0%
CTACAATTCTTTCGGAAACC+TGG + chr3_3:84300205-84300224 None:intergenic 40.0%
ATTTGAGCAGTGGAATCTTC+TGG - chr3_3:84300292-84300311 Msa0479340:intron 40.0%
AAGAAATGTCTCCTTGCAGA+AGG - chr3_3:84300530-84300549 Msa0479340:intron 40.0%
TACTTGAGAGTTACAGTCCA+CGG + chr3_3:84300706-84300725 None:intergenic 40.0%
TCAAGTAGAGGCAATAGTTC+AGG - chr3_3:84300719-84300738 Msa0479340:CDS 40.0%
TTAGTGCAAAAATAGGTGGG+TGG + chr3_3:84300765-84300784 None:intergenic 40.0%
CACCAAACATTACAGCGAAA+AGG + chr3_3:84301083-84301102 None:intergenic 40.0%
! TCGCTGTAATGTTTGGTGAT+TGG - chr3_3:84301085-84301104 Msa0479340:intron 40.0%
! CGCTGTAATGTTTGGTGATT+GGG - chr3_3:84301086-84301105 Msa0479340:intron 40.0%
! GCTGTAATGTTTGGTGATTG+GGG - chr3_3:84301087-84301106 Msa0479340:intron 40.0%
! GCACTTTTCTCAATCTACAC+TGG - chr3_3:84301323-84301342 Msa0479340:intron 40.0%
CTATTTGGACAATCTGCCTA+TGG - chr3_3:84301383-84301402 Msa0479340:intron 40.0%
AATCAAAACCACCTGCATGT+AGG + chr3_3:84301419-84301438 None:intergenic 40.0%
GTAGTAGCATCCCTGAAAAA+AGG + chr3_3:84301494-84301513 None:intergenic 40.0%
TTCAGGGATGCTACTACAAT+AGG - chr3_3:84301497-84301516 Msa0479340:intron 40.0%
GGATGCTACTACAATAGGTT+TGG - chr3_3:84301502-84301521 Msa0479340:intron 40.0%
! CATTTAGGATCTACGCCAAA+TGG + chr3_3:84301548-84301567 None:intergenic 40.0%
CATTTGGCGTAGATCCTAAA+TGG - chr3_3:84301546-84301565 Msa0479340:intron 40.0%
! GGAGTATCCCAAATGAATCT+TGG - chr3_3:84301632-84301651 Msa0479340:intron 40.0%
! ATTGGTGCCTGAAGCAATAT+AGG + chr3_3:84301780-84301799 None:intergenic 40.0%
GGAGTGAAAGATAGCCAAAT+AGG + chr3_3:84301831-84301850 None:intergenic 40.0%
! GGCTTTGGTAATAACATCCA+TGG + chr3_3:84302103-84302122 None:intergenic 40.0%
TTCTTCAAGAGAAAGGGCTT+TGG + chr3_3:84302118-84302137 None:intergenic 40.0%
CCCATTGTAGATCAAAGAGT+AGG + chr3_3:84302255-84302274 None:intergenic 40.0%
CAGCTTCCTATCTTCGTTTA+TGG - chr3_3:84302399-84302418 Msa0479340:CDS 40.0%
! ACAAAGTTTTGCTTCTCGCA+TGG - chr3_3:84302656-84302675 Msa0479340:CDS 40.0%
! CAAAGTTTTGCTTCTCGCAT+GGG - chr3_3:84302657-84302676 Msa0479340:CDS 40.0%
! AAAGTTTTGCTTCTCGCATG+GGG - chr3_3:84302658-84302677 Msa0479340:CDS 40.0%
AACACCATTGTTCTCATTGC+TGG - chr3_3:84302764-84302783 Msa0479340:intron 40.0%
AATGCCAGCAATGAGAACAA+TGG + chr3_3:84302771-84302790 None:intergenic 40.0%
! TGTTGGTGTCTTACTGGTAA+TGG - chr3_3:84302811-84302830 Msa0479340:intron 40.0%
!! TGCATGCTTTGAGACTTCAT+TGG - chr3_3:84302852-84302871 Msa0479340:CDS 40.0%
!! GCATGCTTTGAGACTTCATT+GGG - chr3_3:84302853-84302872 Msa0479340:CDS 40.0%
! GTTCCAGAACAAGTTTTACG+AGG - chr3_3:84302880-84302899 Msa0479340:CDS 40.0%
! AACAAGTTTTACGAGGGAGA+TGG - chr3_3:84302887-84302906 Msa0479340:CDS 40.0%
! GATCGATGAGCCGATTCAAT+TGG + chr3_3:84298606-84298625 None:intergenic 45.0%
CATCGATCCATCTCTTACCT+TGG - chr3_3:84298618-84298637 Msa0479340:CDS 45.0%
ATCTCTTACCTTGGCGATCT+CGG - chr3_3:84298627-84298646 Msa0479340:CDS 45.0%
GAAGCATAGGTCTGTTGGAA+TGG + chr3_3:84298847-84298866 None:intergenic 45.0%
TCTCTCGTTGACCATGTTGA+TGG + chr3_3:84299157-84299176 None:intergenic 45.0%
TCAACATGGTCAACGAGAGA+TGG - chr3_3:84299157-84299176 Msa0479340:CDS 45.0%
CATGGGAATGCTCTCTTTAC+CGG + chr3_3:84299245-84299264 None:intergenic 45.0%
AGGGGAAAGACCAAGCTATA+TGG + chr3_3:84299413-84299432 None:intergenic 45.0%
GTTGAACTTCAAGCTCTCTC+TGG + chr3_3:84299545-84299564 None:intergenic 45.0%
!!! TGTTTTTCTGAAGCAGGCTG+TGG - chr3_3:84299806-84299825 Msa0479340:CDS 45.0%
AGATCCTTTGTCAGGAGAGA+AGG - chr3_3:84299845-84299864 Msa0479340:CDS 45.0%
GTAACCTTCTCTCCTGACAA+AGG + chr3_3:84299852-84299871 None:intergenic 45.0%
TGCAGGCAAAGCAAAAACCA+AGG + chr3_3:84300096-84300115 None:intergenic 45.0%
!!! TCCTGTTTTTGCAACAAGCC+AGG - chr3_3:84300559-84300578 Msa0479340:intron 45.0%
!! ACCTGGCTTGTTGCAAAAAC+AGG + chr3_3:84300563-84300582 None:intergenic 45.0%
GGACTGTAACTCTCAAGTAG+AGG - chr3_3:84300707-84300726 Msa0479340:CDS 45.0%
TGACAGAATTGCCAAGTACC+AGG - chr3_3:84301017-84301036 Msa0479340:intron 45.0%
! AGGATTTGCTTCCTGGTACT+TGG + chr3_3:84301031-84301050 None:intergenic 45.0%
AAGTACCAGGAAGCAAATCC+TGG - chr3_3:84301030-84301049 Msa0479340:intron 45.0%
GTGATGATTGTGTACACACC+AGG + chr3_3:84301051-84301070 None:intergenic 45.0%
! ATGTTTGGTGATTGGGGTCA+TGG - chr3_3:84301093-84301112 Msa0479340:intron 45.0%
ATCCTAAATGGCATGGCACA+CGG - chr3_3:84301558-84301577 Msa0479340:intron 45.0%
AAAATGGTGCACTGGATCAC+AGG - chr3_3:84301861-84301880 Msa0479340:intron 45.0%
GGTGAAAACCAGCTCTTTGT+TGG - chr3_3:84301937-84301956 Msa0479340:CDS 45.0%
! ACTTTTGGCCAACAAAGAGC+TGG + chr3_3:84301948-84301967 None:intergenic 45.0%
TGGCACTCATTTCAGTACCA+TGG - chr3_3:84302083-84302102 Msa0479340:intron 45.0%
TTGTGAATACCACGTGACTC+TGG + chr3_3:84302293-84302312 None:intergenic 45.0%
CGCTGAAATCAAACTCCTCA+TGG + chr3_3:84302319-84302338 None:intergenic 45.0%
! TGAGGAGTTTGATTTCAGCG+AGG - chr3_3:84302319-84302338 Msa0479340:CDS 45.0%
! AAGTTTTGCTTCTCGCATGG+GGG - chr3_3:84302659-84302678 Msa0479340:CDS 45.0%
! TGCAACTGTTGGTGTCTTAC+TGG - chr3_3:84302805-84302824 Msa0479340:intron 45.0%
! CTCCCTCGTAAAACTTGTTC+TGG + chr3_3:84302886-84302905 None:intergenic 45.0%
!!! TGTATTTATTATATTTTATT+CGG - chr3_3:84299950-84299969 Msa0479340:CDS 5.0%
GAGATCGCCAAGGTAAGAGA+TGG + chr3_3:84298628-84298647 None:intergenic 50.0%
CCTGTGAAGCATAGGTCTGT+TGG + chr3_3:84298852-84298871 None:intergenic 50.0%
CCAACAGACCTATGCTTCAC+AGG - chr3_3:84298849-84298868 Msa0479340:CDS 50.0%
AACTTCAAGCTCTCTCTGGC+GGG + chr3_3:84299541-84299560 None:intergenic 50.0%
GAACTTCAAGCTCTCTCTGG+CGG + chr3_3:84299542-84299561 None:intergenic 50.0%
AATGTCTCCTTGCAGAAGGC+TGG - chr3_3:84300534-84300553 Msa0479340:intron 50.0%
!! AGTATTGATGCGAGCAACCG+TGG - chr3_3:84300686-84300705 Msa0479340:CDS 50.0%
! ACACACCAGGATTTGCTTCC+TGG + chr3_3:84301038-84301057 None:intergenic 50.0%
TGTAGGATCGCGACATCCAT+AGG + chr3_3:84301402-84301421 None:intergenic 50.0%
GTGCGCGACACTTATCCATT+TGG - chr3_3:84301530-84301549 Msa0479340:intron 50.0%
GGCGTAGATCCTAAATGGCA+TGG - chr3_3:84301551-84301570 Msa0479340:intron 50.0%
GAGGGCCCATAAACGAAGAT+AGG + chr3_3:84302408-84302427 None:intergenic 50.0%
ATCTTCGTTTATGGGCCCTC+AGG - chr3_3:84302408-84302427 Msa0479340:intron 50.0%
GAAAAAGGCCGAGATCGCCA+AGG + chr3_3:84298638-84298657 None:intergenic 55.0%
GATGTCGCGATCCTACATGC+AGG - chr3_3:84301405-84301424 Msa0479340:intron 55.0%
! CTCCGTGTGCCATGCCATTT+AGG + chr3_3:84301563-84301582 None:intergenic 55.0%
! CCACGTGACTCTGGTTCAAG+AGG + chr3_3:84302284-84302303 None:intergenic 55.0%
CCTCTTGAACCAGAGTCACG+TGG - chr3_3:84302281-84302300 Msa0479340:intron 55.0%
!! AAGCTCTCTCTGGCGGGTTG+CGG + chr3_3:84299535-84299554 None:intergenic 60.0%
CAGGACACCAGCCTTCTGCA+AGG + chr3_3:84300544-84300563 None:intergenic 60.0%
GTCGCGATCCTACATGCAGG+TGG - chr3_3:84301408-84301427 Msa0479340:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84298555 84302949 84298555 ID=Msa0479340;Name=Msa0479340
chr3_3 mRNA 84298555 84302949 84298555 ID=Msa0479340-mRNA-1;Parent=Msa0479340;Name=Msa0479340-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|17|0|758
chr3_3 exon 84302836 84302949 84302836 ID=Msa0479340-mRNA-1:exon:23942;Parent=Msa0479340-mRNA-1
chr3_3 exon 84302634 84302678 84302634 ID=Msa0479340-mRNA-1:exon:23941;Parent=Msa0479340-mRNA-1
chr3_3 exon 84302300 84302422 84302300 ID=Msa0479340-mRNA-1:exon:23940;Parent=Msa0479340-mRNA-1
chr3_3 exon 84302105 84302212 84302105 ID=Msa0479340-mRNA-1:exon:23939;Parent=Msa0479340-mRNA-1
chr3_3 exon 84301896 84302006 84301896 ID=Msa0479340-mRNA-1:exon:23938;Parent=Msa0479340-mRNA-1
chr3_3 exon 84301638 84301811 84301638 ID=Msa0479340-mRNA-1:exon:23937;Parent=Msa0479340-mRNA-1
chr3_3 exon 84301191 84301298 84301191 ID=Msa0479340-mRNA-1:exon:23936;Parent=Msa0479340-mRNA-1
chr3_3 exon 84300924 84301031 84300924 ID=Msa0479340-mRNA-1:exon:23935;Parent=Msa0479340-mRNA-1
chr3_3 exon 84300678 84300826 84300678 ID=Msa0479340-mRNA-1:exon:23934;Parent=Msa0479340-mRNA-1
chr3_3 exon 84300328 84300481 84300328 ID=Msa0479340-mRNA-1:exon:23933;Parent=Msa0479340-mRNA-1
chr3_3 exon 84300078 84300238 84300078 ID=Msa0479340-mRNA-1:exon:23932;Parent=Msa0479340-mRNA-1
chr3_3 exon 84299796 84300002 84299796 ID=Msa0479340-mRNA-1:exon:23931;Parent=Msa0479340-mRNA-1
chr3_3 exon 84299529 84299712 84299529 ID=Msa0479340-mRNA-1:exon:23930;Parent=Msa0479340-mRNA-1
chr3_3 exon 84299354 84299437 84299354 ID=Msa0479340-mRNA-1:exon:23929;Parent=Msa0479340-mRNA-1
chr3_3 exon 84299075 84299268 84299075 ID=Msa0479340-mRNA-1:exon:23928;Parent=Msa0479340-mRNA-1
chr3_3 exon 84298824 84298883 84298824 ID=Msa0479340-mRNA-1:exon:23927;Parent=Msa0479340-mRNA-1
chr3_3 exon 84298555 84298747 84298555 ID=Msa0479340-mRNA-1:exon:23926;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84302836 84302949 84302836 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84302634 84302678 84302634 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84302300 84302422 84302300 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84302105 84302212 84302105 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84301896 84302006 84301896 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84301638 84301811 84301638 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84301191 84301298 84301191 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84300924 84301031 84300924 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84300678 84300826 84300678 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84300328 84300481 84300328 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84300078 84300238 84300078 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84299796 84300002 84299796 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84299529 84299712 84299529 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84299354 84299437 84299354 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84299075 84299268 84299075 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84298824 84298883 84298824 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
chr3_3 CDS 84298555 84298747 84298555 ID=Msa0479340-mRNA-1:cds;Parent=Msa0479340-mRNA-1
Gene Sequence

>Msa0479340

ATGGATCTTTTGCGATCAGAGCCTATGCAACTTGTTCAATTGATTATTCCAATTGAATCGGCTCATCGATCCATCTCTTACCTTGGCGATCTCGGCCTTTTTCAGTTCAAAGATCTTAATGAAGATAAAAGCCCATTCCAACAGACCTATGCTTCACAGGTTAAAAGATGTGGGGAAATGTCGCGTAAGTTGCGTTTATTTAAGGAGCAAATGAAAAAGGCAAATATATCTCCATCAACATGGTCAACGAGAGATGGTTCTATTGATCTAGAAAATTTGGAGGTTAAACTAGCAGAACTTGAAGCCGAGCTAATTGAGATTAATTCAAACAATGAGAAGTTGCAGCACACTTATAATGAACTTATAGAGTACAAGCTTGTTTTAGAGAAGGTTGGGGAGTTTTTCTCTTCAGCACAAATCAGTGCCGCAACCCGCCAGAGAGAGCTTGAAGTTCAACCAACTTTTGAAGGGTCTATTGACTGTCCATTATTAATGGAACATGAGACAACGGCATATTCAGTAAAGCAGATAAAATTGGGGTTTATAACCGGTCTTGTTACTAGGGAAAAATCAATTCCTTTCGAAAGAATTCTATTTCGTGCTACTAGGGGAAATGTTTTTCTGAAGCAGGCTGTGGTTGAACATCATGTTCTAGATCCTTTGTCAGGAGAGAAGGTTTCCGAAAGAATTGTAGAATTAAAGACAACCATTGATGTAGGTTTGCATCATCGAAGCAATTTGTTGCAAACAATTGGATATCAATTTGAGCAGTGGAATCTTCTGTTGCAAAAGGAAAAGTCCATTTATCACATTCTAAATAGGCTAAACATTAATGTGACAAAGAAATGTCTCCTTGCAGAAGGCTGGTGTCCTGTTTTTGCAACAAGCCAGATTCAAAAAGTATTGATGCGAGCAACCGTGGACTGTAACTCTCAAGTAGAGGCAATAGTTCAGGTTTTGCAGACAAATGAGTTACCACCCACCTATTTTTGCACTAACATTTTTACTTCTTCTTTTCAAGAAATTGTAGACGCATATGGAATTGCCAAGTACCAGGAAGCAAATCCTGGTGTGTACACAATCATCACGTTTCCTTTCCTTTTCGCTGTAATGTTTGGTGATTGGGGTCATGGCATATGCCTATTATTGGCAACTTTCTATTTCATAATCAATGAAAAAAAGTTTTACGGTCAGAAACTTGGAGACATATTAGAAATGGTTTTTGGGGGGAGATATATTATTATGATGATGGCACTTTTCTCAATCTACACTGGGTTAATATATAATGAATTCTTCTCCATTCCGTTTGAACTATTTGGACAATCTGCCTATGGATGTCGCGATCCTACATGCAGGGATGCTACTACAATAGGTTTGGTAAAAGTGCGCGACACTTATCCATTTGGCGTAGATCCTAAATGGCATGGCACACGGAGTGAACTTCCATTTCTTAACTCGCTTAAAATGAAGATGTCAATTCTATTGGGAGTATCCCAAATGAATCTTGGAATCATATTGAGTTACTATAATGCCAAATACTTTGAAAACAACATAAACATATGGCACCAATTTGTTCCCCAAATTGTATTCTTGAACAGCCTATTTGGCTATCTTTCACTCCTCATAATTGTAAAATGGTGCACTGGATCACAGGCTGACTTGTATCATGTGATGATATACATGTTTCTAAGTCCAACAGATGATTTGGGTGAAAACCAGCTCTTTGTTGGCCAAAAGTTCTTTCAAGTTATATTACTATTGTTGGCACTCATTTCAGTACCATGGATGTTATTACCAAAGCCCTTTCTCTTGAAGAAACAACATCAAGAAAGGCATAAAAGTCAATCCTACTCTTTGATCTACAATGGGGATGATCCTCTTGAACCAGAGTCACGTGGTATTCACAAAAACCATGAGGAGTTTGATTTCAGCGAGGTTTTTGTGCACCAACTTATACATACAATAGAATTTGTGCTTGGAGCTGTGTCTAATACAGCTTCCTATCTTCGTTTATGGGCCCTCAGTTTAGCTCATTCAGAGTTGTCAAGCGTTTTCTACGACAAAGTTTTGCTTCTCGCATGGGGGTATAACAACACCATTGTTCTCATTGCTGGCATTATTGTTTTTATTTGTGCAACTGTTGGTGTCTTACTGGTAATGGAAAGTCTAAGTGCGTTCTTGCATGCTTTGAGACTTCATTGGGTAGAGTTCCAGAACAAGTTTTACGAGGGAGATGGATACAAATTCTACCCATTTTCATTTACATCCATCCCTTAA

Protein sequence

>Msa0479340

MDLLRSEPMQLVQLIIPIESAHRSISYLGDLGLFQFKDLNEDKSPFQQTYASQVKRCGEMSRKLRLFKEQMKKANISPSTWSTRDGSIDLENLEVKLAELEAELIEINSNNEKLQHTYNELIEYKLVLEKVGEFFSSAQISAATRQRELEVQPTFEGSIDCPLLMEHETTAYSVKQIKLGFITGLVTREKSIPFERILFRATRGNVFLKQAVVEHHVLDPLSGEKVSERIVELKTTIDVGLHHRSNLLQTIGYQFEQWNLLLQKEKSIYHILNRLNINVTKKCLLAEGWCPVFATSQIQKVLMRATVDCNSQVEAIVQVLQTNELPPTYFCTNIFTSSFQEIVDAYGIAKYQEANPGVYTIITFPFLFAVMFGDWGHGICLLLATFYFIINEKKFYGQKLGDILEMVFGGRYIIMMMALFSIYTGLIYNEFFSIPFELFGQSAYGCRDPTCRDATTIGLVKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGIILSYYNAKYFENNINIWHQFVPQIVFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFVGQKFFQVILLLLALISVPWMLLPKPFLLKKQHQERHKSQSYSLIYNGDDPLEPESRGIHKNHEEFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGYNNTIVLIAGIIVFICATVGVLLVMESLSAFLHALRLHWVEFQNKFYEGDGYKFYPFSFTSIP*