Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343170 | XP_003611733.1 | 97.441 | 469 | 12 | 0 | 1 | 469 | 1 | 469 | 0.0 | 952 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343170 | sp|F4JFU8|OBL1_ARATH | 38.723 | 501 | 265 | 7 | 2 | 460 | 8 | 508 | 2.05e-119 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343170 | G7K6N4 | 97.441 | 469 | 12 | 0 | 1 | 469 | 1 | 469 | 0.0 | 952 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0343170 | Msa0714910 | 0.810284 | 1.244199e-50 | -8.615850e-47 |
| Msa0343170 | Msa0756920 | 0.984568 | 6.109349e-161 | -8.615850e-47 |
| Msa0343170 | Msa0836480 | 0.983794 | 9.980329e-159 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343170 | MtrunA17_Chr5g0402171 | 97.441 | 469 | 12 | 0 | 1 | 469 | 1 | 469 | 0.0 | 952 |
| Msa0343170 | MtrunA17_Chr1g0153271 | 48.684 | 456 | 231 | 3 | 13 | 467 | 11 | 464 | 1.84e-159 | 459 |
| Msa0343170 | MtrunA17_Chr7g0276561 | 39.752 | 483 | 256 | 6 | 13 | 460 | 8 | 490 | 2.23e-121 | 363 |
| Msa0343170 | MtrunA17_Chr3g0123741 | 53.357 | 283 | 111 | 2 | 181 | 462 | 37 | 299 | 8.37e-105 | 314 |
| Msa0343170 | MtrunA17_Chr3g0123751 | 41.964 | 112 | 52 | 3 | 73 | 171 | 30 | 141 | 1.48e-16 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343170 | AT5G42930.1 | 50.985 | 457 | 217 | 4 | 12 | 462 | 6 | 461 | 4.95e-169 | 484 |
| Msa0343170 | AT1G56630.1 | 48.932 | 468 | 219 | 6 | 12 | 461 | 6 | 471 | 8.53e-158 | 456 |
| Msa0343170 | AT5G67050.1 | 47.436 | 468 | 231 | 7 | 1 | 459 | 1 | 462 | 6.51e-157 | 454 |
| Msa0343170 | AT5G42930.2 | 48.556 | 381 | 189 | 4 | 12 | 386 | 6 | 385 | 2.32e-133 | 391 |
| Msa0343170 | AT1G45201.1 | 44.635 | 466 | 251 | 5 | 3 | 464 | 2 | 464 | 2.40e-131 | 389 |
| Msa0343170 | AT1G45201.3 | 44.635 | 466 | 251 | 5 | 3 | 464 | 27 | 489 | 4.01e-131 | 389 |
| Msa0343170 | AT3G14360.1 | 38.723 | 501 | 265 | 7 | 2 | 460 | 8 | 508 | 2.08e-120 | 362 |
| Msa0343170 | AT1G45201.2 | 45.501 | 389 | 203 | 6 | 3 | 386 | 2 | 386 | 3.51e-106 | 321 |
Find 136 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTTGATAGTATATTTA+AGG | 0.110916 | 3_1:-1197191 | None:intergenic |
| CCTAGGACTACAAAAGAATT+TGG | 0.130121 | 3_1:+1198229 | Msa0343170:CDS |
| GATATTATTGGACAAATTTA+AGG | 0.140061 | 3_1:+1198076 | Msa0343170:CDS |
| CTTGTCTTGCATTGGAAATT+TGG | 0.140513 | 3_1:+1197068 | Msa0343170:CDS |
| TGGAACTTACATTTCAAATT+TGG | 0.161115 | 3_1:+1199503 | Msa0343170:three_prime_UTR |
| ATTAACCTCATTGCTCTTAA+TGG | 0.184975 | 3_1:+1195142 | Msa0343170:CDS |
| TCAAAATTCAACAATATTAT+AGG | 0.188034 | 3_1:+1199445 | Msa0343170:three_prime_UTR |
| CACTAGCCTATTATGTTATT+AGG | 0.196321 | 3_1:+1198291 | Msa0343170:CDS |
| CAATGAACAACAAGAATTTC+TGG | 0.201915 | 3_1:-1195078 | None:intergenic |
| AACCCAAGTCTTGATATTAT+TGG | 0.213124 | 3_1:+1198064 | Msa0343170:CDS |
| CACTTGCCAAGATTGGTTAT+TGG | 0.262528 | 3_1:+1195107 | Msa0343170:CDS |
| TATAATTACGGGTCATAGTT+TGG | 0.267812 | 3_1:+1198358 | Msa0343170:CDS |
| TCATCTCTTTCAATCTCTTT+AGG | 0.270056 | 3_1:-1198257 | None:intergenic |
| TCTATTATGAGGAATGATTT+AGG | 0.281682 | 3_1:-1199629 | None:intergenic |
| TAATGCAAAGTTTATAATTA+CGG | 0.300822 | 3_1:+1198346 | Msa0343170:CDS |
| ACTTGCCAAGATTGGTTATT+GGG | 0.319969 | 3_1:+1195108 | Msa0343170:CDS |
| TCAAAGAAATGAGCATCTTC+TGG | 0.331571 | 3_1:-1194935 | None:intergenic |
| ACTAGCCTATTATGTTATTA+GGG | 0.331798 | 3_1:+1198292 | Msa0343170:CDS |
| ATCTCTTGGTATGGGATTCC+CGG | 0.333988 | 3_1:+1198173 | Msa0343170:CDS |
| ATGGTTGGTTTACTAATTCC+AGG | 0.346840 | 3_1:+1199089 | Msa0343170:CDS |
| GTAATTATAAACTTTGCATT+AGG | 0.348338 | 3_1:-1198344 | None:intergenic |
| TGTTCTCTTCTCAAAGAGTT+AGG | 0.352505 | 3_1:+1199319 | Msa0343170:three_prime_UTR |
| AATGCAAAGTTTATAATTAC+GGG | 0.356213 | 3_1:+1198347 | Msa0343170:CDS |
| TATGTCCCTAATAACATAAT+AGG | 0.359007 | 3_1:-1198297 | None:intergenic |
| TTCTTTGAAATGTCTTTCAA+TGG | 0.359014 | 3_1:-1199162 | None:intergenic |
| GGTAGTTAATAGCACAATAA+TGG | 0.360302 | 3_1:-1194854 | None:intergenic |
| AAGACATGTGTTATGACTTA+TGG | 0.368603 | 3_1:-1199592 | None:intergenic |
| AGGAATGATTTAGGCTTATG+AGG | 0.381367 | 3_1:-1199620 | None:intergenic |
| GCTAAACCACTTGCCAAGAT+TGG | 0.383519 | 3_1:+1195100 | Msa0343170:CDS |
| ATAATTACGGGTCATAGTTT+GGG | 0.384486 | 3_1:+1198359 | Msa0343170:CDS |
| AGTTGAATTAATATAATCTT+GGG | 0.390448 | 3_1:-1199129 | None:intergenic |
| ATATGCTCTTCAAACACTTT+GGG | 0.390714 | 3_1:+1198600 | Msa0343170:CDS |
| TTTACCATTGCCTATAGAAA+TGG | 0.395799 | 3_1:+1199026 | Msa0343170:CDS |
| CATGATATTTAATGCCATAC+TGG | 0.399831 | 3_1:+1198989 | Msa0343170:CDS |
| TCAAAATACTTGTCTTGCAT+TGG | 0.400909 | 3_1:+1197060 | Msa0343170:CDS |
| CAGTATGGCATTAAATATCA+TGG | 0.402639 | 3_1:-1198988 | None:intergenic |
| CTAGGACTACAAAAGAATTT+GGG | 0.404063 | 3_1:+1198230 | Msa0343170:CDS |
| TATATTAATTCAACTCTCCT+TGG | 0.404606 | 3_1:+1199137 | Msa0343170:CDS |
| ATGGCTTCTACTTGCGATAA+GGG | 0.405244 | 3_1:+1194884 | Msa0343170:CDS |
| GATATGCTCTTCAAACACTT+TGG | 0.411572 | 3_1:+1198599 | Msa0343170:CDS |
| TTGGAAGGGATTTACACATT+TGG | 0.413556 | 3_1:+1198449 | Msa0343170:CDS |
| GATCTTGATATCTCTTGGTA+TGG | 0.418281 | 3_1:+1198164 | Msa0343170:CDS |
| GAGTTGAATTAATATAATCT+TGG | 0.418572 | 3_1:-1199130 | None:intergenic |
| CATGGCTTCTACTTGCGATA+AGG | 0.419594 | 3_1:+1194883 | Msa0343170:exon |
| GCAATAAACAAACCTACAAT+AGG | 0.419899 | 3_1:-1198540 | None:intergenic |
| ATTATAATTAACTTTCTCTC+AGG | 0.423060 | 3_1:+1195178 | Msa0343170:CDS |
| ATCGTTTCCAAGTGAAATGA+AGG | 0.424425 | 3_1:+1199420 | Msa0343170:three_prime_UTR |
| TCATGTAAGAACATAATTGT+TGG | 0.426080 | 3_1:-1198404 | None:intergenic |
| GCTCCTTATGAGTTCCAGTA+TGG | 0.438651 | 3_1:-1199003 | None:intergenic |
| GAAATTGTTGATTGAGAGGT+TGG | 0.442736 | 3_1:+1198430 | Msa0343170:CDS |
| CTCAACCCAATAACCAATCT+TGG | 0.446288 | 3_1:-1195113 | None:intergenic |
| ATTTCCTATGCCCTATGTCC+CGG | 0.451521 | 3_1:-1194979 | None:intergenic |
| ATTAGGGACATATTAAGAAA+AGG | 0.454297 | 3_1:+1198308 | Msa0343170:CDS |
| AAAATCGTATAACCTATTGT+AGG | 0.457710 | 3_1:+1198528 | Msa0343170:CDS |
| TTTCTTACAGATGGAGTATG+TGG | 0.459644 | 3_1:+1197329 | Msa0343170:intron |
| TATCTCTCATCTCCAACTCT+TGG | 0.464603 | 3_1:-1198476 | None:intergenic |
| GGAATGATTTAGGCTTATGA+GGG | 0.465369 | 3_1:-1199619 | None:intergenic |
| TTGTTGATTGAGAGGTTGGA+AGG | 0.470831 | 3_1:+1198434 | Msa0343170:CDS |
| GGACCATGAGCAGGTAATCC+TGG | 0.476008 | 3_1:-1199107 | None:intergenic |
| GCACCATGCATCTGCATCAA+AGG | 0.477633 | 3_1:-1198138 | None:intergenic |
| GTAGTGAGGTCCATTTCTAT+AGG | 0.479877 | 3_1:-1199036 | None:intergenic |
| GCACCGATCTTGATATCTCT+TGG | 0.481432 | 3_1:+1198159 | Msa0343170:CDS |
| CAAGTAGAAGCCATGGCTTA+AGG | 0.481455 | 3_1:-1194875 | None:intergenic |
| ATGCCATACTGGAACTCATA+AGG | 0.484427 | 3_1:+1199000 | Msa0343170:CDS |
| CATAGCGCCTATTAAAGAAA+AGG | 0.484819 | 3_1:-1198628 | None:intergenic |
| TTTGAAACCTTCATTTCACT+TGG | 0.488794 | 3_1:-1199427 | None:intergenic |
| CTATGTTAATCTATCTATGA+TGG | 0.490863 | 3_1:+1197137 | Msa0343170:CDS |
| AGGGAAGTTTCAGAGGTAGA+TGG | 0.492187 | 3_1:+1195032 | Msa0343170:CDS |
| GTCCAATAATATCAAGACTT+GGG | 0.497259 | 3_1:-1198066 | None:intergenic |
| TGTCCAATAATATCAAGACT+TGG | 0.500256 | 3_1:-1198067 | None:intergenic |
| GAGAAAGTTAATTATAATCA+TGG | 0.501031 | 3_1:-1195173 | None:intergenic |
| AAGGTTGCCCTACGATGATA+AGG | 0.503975 | 3_1:+1198577 | Msa0343170:CDS |
| GATGTGGAGGGAAGTTTCAG+AGG | 0.504440 | 3_1:+1195025 | Msa0343170:CDS |
| CATAGGGCATAGGAAATTTG+TGG | 0.508090 | 3_1:+1194985 | Msa0343170:CDS |
| ACATTTGGACAACCAAGAGT+TGG | 0.512602 | 3_1:+1198464 | Msa0343170:CDS |
| TTATCATCGTAGGGCAACCT+TGG | 0.514640 | 3_1:-1198575 | None:intergenic |
| AATATACTATCAAATATGAC+TGG | 0.515887 | 3_1:+1197196 | Msa0343170:CDS |
| TGGTATGGGATTCCCGGTGT+TGG | 0.520545 | 3_1:+1198179 | Msa0343170:CDS |
| ATCTTGATATCTCTTGGTAT+GGG | 0.521138 | 3_1:+1198165 | Msa0343170:CDS |
| CACCATGCATCTGCATCAAA+GGG | 0.523948 | 3_1:-1198137 | None:intergenic |
| TAATAACATAATAGGCTAGT+GGG | 0.524972 | 3_1:-1198289 | None:intergenic |
| TAATATCAAGACTTGGGTTG+TGG | 0.526921 | 3_1:-1198060 | None:intergenic |
| CTAAAATAACAACTTTGCAT+AGG | 0.530054 | 3_1:-1199257 | None:intergenic |
| TGTTGATTGAGAGGTTGGAA+GGG | 0.531128 | 3_1:+1198435 | Msa0343170:CDS |
| TAATCTTGGGGACCATGAGC+AGG | 0.531416 | 3_1:-1199116 | None:intergenic |
| TTTCCTATGCCCTATGTCCC+GGG | 0.534655 | 3_1:-1194978 | None:intergenic |
| TTCTTACAGATGGAGTATGT+GGG | 0.535001 | 3_1:+1197330 | Msa0343170:intron |
| GAGCATATCCTTATCATCGT+AGG | 0.536248 | 3_1:-1198585 | None:intergenic |
| TGATTTAGGCTTATGAGGGG+AGG | 0.546732 | 3_1:-1199615 | None:intergenic |
| TAAGGACCGTGACACTTATG+TGG | 0.548736 | 3_1:+1198094 | Msa0343170:CDS |
| AGCATATCCTTATCATCGTA+GGG | 0.559509 | 3_1:-1198584 | None:intergenic |
| TACTATCAAATATGACTGGA+AGG | 0.569156 | 3_1:+1197200 | Msa0343170:CDS |
| ATGAGAAATTGTTGATTGAG+AGG | 0.569804 | 3_1:+1198426 | Msa0343170:CDS |
| AATGTCTTTCAATGGATCCA+AGG | 0.570092 | 3_1:-1199154 | None:intergenic |
| CCGTGTGCTCTTCCAACACC+GGG | 0.570804 | 3_1:-1198191 | None:intergenic |
| CTTGACGCTTGAGAATGTCG+AGG | 0.572164 | 3_1:-1197104 | None:intergenic |
| TAATGCTGAAGGAGATGTGG+AGG | 0.574281 | 3_1:+1195012 | Msa0343170:CDS |
| AACCTCATTGCTCTTAATGG+AGG | 0.577915 | 3_1:+1195145 | Msa0343170:CDS |
| CTATTAACTACCTTAAGCCA+TGG | 0.578599 | 3_1:+1194865 | Msa0343170:exon |
| GACTACAAAAGAATTTGGGT+TGG | 0.579558 | 3_1:+1198234 | Msa0343170:CDS |
| AGTATGGCATTAAATATCAT+GGG | 0.582068 | 3_1:-1198987 | None:intergenic |
| ACCGTGTGCTCTTCCAACAC+CGG | 0.586541 | 3_1:-1198192 | None:intergenic |
| CCCGGTGTTGGAAGAGCACA+CGG | 0.587015 | 3_1:+1198191 | Msa0343170:CDS |
| ATTGCAATGACGTTGTTCCA+AGG | 0.588263 | 3_1:+1198558 | Msa0343170:CDS |
| TCTTCTCAAAGAGTTAGGCA+TGG | 0.589207 | 3_1:+1199324 | Msa0343170:three_prime_UTR |
| CAATAACCAATCTTGGCAAG+TGG | 0.589271 | 3_1:-1195106 | None:intergenic |
| TAATAGGCGCTATGAACTCA+AGG | 0.589923 | 3_1:+1198637 | Msa0343170:CDS |
| CTAATAACATAATAGGCTAG+TGG | 0.592254 | 3_1:-1198290 | None:intergenic |
| TTTCCCGGGACATAGGGCAT+AGG | 0.592932 | 3_1:+1194975 | Msa0343170:CDS |
| AATGGACCTCACTACAGAGA+AGG | 0.595853 | 3_1:+1199044 | Msa0343170:CDS |
| ATTCCAGGATTACCTGCTCA+TGG | 0.596826 | 3_1:+1199104 | Msa0343170:CDS |
| AGGTCCATTTCTATAGGCAA+TGG | 0.597360 | 3_1:-1199030 | None:intergenic |
| ATTACGGGTCATAGTTTGGG+TGG | 0.597647 | 3_1:+1198362 | Msa0343170:CDS |
| AAACGATGCTATAGTTCTAG+AGG | 0.601264 | 3_1:-1199377 | None:intergenic |
| ATGGACCTCACTACAGAGAA+GGG | 0.604978 | 3_1:+1199045 | Msa0343170:CDS |
| CTTATCGCAAGTAGAAGCCA+TGG | 0.610270 | 3_1:-1194882 | None:intergenic |
| AATGCTGAAGGAGATGTGGA+GGG | 0.614108 | 3_1:+1195013 | Msa0343170:CDS |
| GTCAAGACACTCACAACCAT+AGG | 0.616784 | 3_1:+1194790 | Msa0343170:five_prime_UTR |
| ATACCAAGAGATATCAAGAT+CGG | 0.620912 | 3_1:-1198162 | None:intergenic |
| TAGTAATGCTGAAGGAGATG+TGG | 0.621964 | 3_1:+1195009 | Msa0343170:CDS |
| GGTGGATTCATGAAAGCCCT+AGG | 0.622022 | 3_1:+1198212 | Msa0343170:CDS |
| AATAATGGAGAGGAGAGGAA+AGG | 0.627315 | 3_1:-1194839 | None:intergenic |
| TTTGTGGATAGTAATGCTGA+AGG | 0.630116 | 3_1:+1195001 | Msa0343170:CDS |
| AACCCTTTGATGCAGATGCA+TGG | 0.632417 | 3_1:+1198135 | Msa0343170:CDS |
| GTTGAATTAATATAATCTTG+GGG | 0.644078 | 3_1:-1199128 | None:intergenic |
| AATAACATAATAGGCTAGTG+GGG | 0.646861 | 3_1:-1198288 | None:intergenic |
| GGACCGTGACACTTATGTGG+TGG | 0.649989 | 3_1:+1198097 | Msa0343170:CDS |
| TTAATAGCACAATAATGGAG+AGG | 0.659188 | 3_1:-1194849 | None:intergenic |
| GAATGATTTAGGCTTATGAG+GGG | 0.664880 | 3_1:-1199618 | None:intergenic |
| ATCATGGGTATTACACACCA+AGG | 0.666303 | 3_1:-1198972 | None:intergenic |
| TTCCTCCATTAAGAGCAATG+AGG | 0.669764 | 3_1:-1195147 | None:intergenic |
| AAGCCACCACATAAGTGTCA+CGG | 0.670111 | 3_1:-1198100 | None:intergenic |
| AACCACCCTTCTCTGTAGTG+AGG | 0.670296 | 3_1:-1199050 | None:intergenic |
| AGCACAATAATGGAGAGGAG+AGG | 0.671684 | 3_1:-1194844 | None:intergenic |
| GACCTCACTACAGAGAAGGG+TGG | 0.721164 | 3_1:+1199048 | Msa0343170:CDS |
| GGTGTTGGAAGAGCACACGG+TGG | 0.802780 | 3_1:+1198194 | Msa0343170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTCTATTATTTTTAG+AGG | - | chr3_1:1195889-1195908 | None:intergenic | 10.0% |
| !! | TAATTTCAATATACAAATAT+TGG | - | chr3_1:1196480-1196499 | None:intergenic | 10.0% |
| !! | TTTATACAGATTCAAAATAT+GGG | - | chr3_1:1195819-1195838 | None:intergenic | 15.0% |
| !!! | TTTTATACAGATTCAAAATA+TGG | - | chr3_1:1195820-1195839 | None:intergenic | 15.0% |
| !! | GATGAAATTTATTAATTCAA+TGG | - | chr3_1:1196156-1196175 | None:intergenic | 15.0% |
| !! | CTATTTATTAAATGAAAACT+AGG | + | chr3_1:1196306-1196325 | Msa0343170:intron | 15.0% |
| !!! | AAGTCAACATAATTAAATTT+TGG | - | chr3_1:1196706-1196725 | None:intergenic | 15.0% |
| !!! | TCTATATATAAGTTGATTTT+TGG | + | chr3_1:1196745-1196764 | Msa0343170:intron | 15.0% |
| !!! | CTATATATAAGTTGATTTTT+GGG | + | chr3_1:1196746-1196765 | Msa0343170:intron | 15.0% |
| !!! | TATATATAAGTTGATTTTTG+GGG | + | chr3_1:1196747-1196766 | Msa0343170:intron | 15.0% |
| !!! | TTGTTATTATAAACAAAAAC+AGG | + | chr3_1:1197009-1197028 | Msa0343170:intron | 15.0% |
| !!! | CATATTTGATAGTATATTTA+AGG | - | chr3_1:1197194-1197213 | None:intergenic | 15.0% |
| !!! | AACTTATTTGTTAAGTTTTT+TGG | + | chr3_1:1197232-1197251 | Msa0343170:intron | 15.0% |
| !!! | ACTTATTTGTTAAGTTTTTT+GGG | + | chr3_1:1197233-1197252 | Msa0343170:intron | 15.0% |
| !! | AAGAAAGAAAGAAAAAAAAT+AGG | - | chr3_1:1197311-1197330 | None:intergenic | 15.0% |
| !! | TAATGCAAAGTTTATAATTA+CGG | + | chr3_1:1198346-1198365 | Msa0343170:CDS | 15.0% |
| !! | AGTTGAATTAATATAATCTT+GGG | - | chr3_1:1199132-1199151 | None:intergenic | 15.0% |
| !! | TCAAAATTCAACAATATTAT+AGG | + | chr3_1:1199445-1199464 | Msa0343170:three_prime_UTR | 15.0% |
| !!! | TTATTCGTATTTTATTTTCC+CGG | + | chr3_1:1194960-1194979 | Msa0343170:CDS | 20.0% |
| !! | GAGAAAGTTAATTATAATCA+TGG | - | chr3_1:1195176-1195195 | None:intergenic | 20.0% |
| !! | ATTATAATTAACTTTCTCTC+AGG | + | chr3_1:1195178-1195197 | Msa0343170:CDS | 20.0% |
| !! | ATACCTAATTAACAAGTAAA+AGG | + | chr3_1:1195273-1195292 | Msa0343170:intron | 20.0% |
| !!! | TTTCCTTTTACTTGTTAATT+AGG | - | chr3_1:1195279-1195298 | None:intergenic | 20.0% |
| !! | TTATACAGATTCAAAATATG+GGG | - | chr3_1:1195818-1195837 | None:intergenic | 20.0% |
| !! | AGAATTGAACTAATTTGAAT+CGG | - | chr3_1:1196079-1196098 | None:intergenic | 20.0% |
| !!! | TATTGATTCCATGATAAAAA+AGG | + | chr3_1:1196235-1196254 | Msa0343170:intron | 20.0% |
| !! | ATGTATAAGCAAAATAATCT+TGG | - | chr3_1:1196275-1196294 | None:intergenic | 20.0% |
| !!! | AATAGCTCTATTATTTGATT+AGG | - | chr3_1:1196397-1196416 | None:intergenic | 20.0% |
| !! | ACTTATAGTATAAAAGACTT+TGG | + | chr3_1:1196722-1196741 | Msa0343170:intron | 20.0% |
| !!! | TATTTTGATGATTTAGGATT+TGG | - | chr3_1:1197048-1197067 | None:intergenic | 20.0% |
| !! | AATATACTATCAAATATGAC+TGG | + | chr3_1:1197196-1197215 | Msa0343170:CDS | 20.0% |
| !!! | CTTATTTGTTAAGTTTTTTG+GGG | + | chr3_1:1197234-1197253 | Msa0343170:intron | 20.0% |
| !! | AAGAAAAAAAACTCATTTAG+TGG | + | chr3_1:1197437-1197456 | Msa0343170:intron | 20.0% |
| !! | GATATTATTGGACAAATTTA+AGG | + | chr3_1:1198076-1198095 | Msa0343170:CDS | 20.0% |
| !! | GTAATTATAAACTTTGCATT+AGG | - | chr3_1:1198347-1198366 | None:intergenic | 20.0% |
| !! | AATGCAAAGTTTATAATTAC+GGG | + | chr3_1:1198347-1198366 | Msa0343170:CDS | 20.0% |
| !! | ATATATGCAACAAAAAATGA+AGG | + | chr3_1:1198505-1198524 | Msa0343170:CDS | 20.0% |
| !! | ATCAAAGTTCAAATTTCAAT+CGG | - | chr3_1:1198754-1198773 | None:intergenic | 20.0% |
| !!! | TATATCCAGTATATTACTTT+TGG | - | chr3_1:1198850-1198869 | None:intergenic | 20.0% |
| !! | GTTGAATTAATATAATCTTG+GGG | - | chr3_1:1199131-1199150 | None:intergenic | 20.0% |
| !! | GAGTTGAATTAATATAATCT+TGG | - | chr3_1:1199133-1199152 | None:intergenic | 20.0% |
| !!! | AACGATTTATACTTTTTGAT+AGG | - | chr3_1:1199406-1199425 | None:intergenic | 20.0% |
| !!! | TATAGTTCTTTTTTAGCCTA+TGG | - | chr3_1:1194809-1194828 | None:intergenic | 25.0% |
| !!! | TATTCGTATTTTATTTTCCC+GGG | + | chr3_1:1194961-1194980 | Msa0343170:CDS | 25.0% |
| ! | ACAAGTAAAAGGAAAAAAAG+TGG | + | chr3_1:1195284-1195303 | Msa0343170:intron | 25.0% |
| ! | CAGCTAAATGAATATTTGAT+GGG | + | chr3_1:1195317-1195336 | Msa0343170:intron | 25.0% |
| ! | AAATTAAAAAATCCTTGTCC+CGG | + | chr3_1:1195674-1195693 | Msa0343170:intron | 25.0% |
| ! | TCACCACAAAAAAAAATATG+GGG | - | chr3_1:1195712-1195731 | None:intergenic | 25.0% |
| ! | GTCACCACAAAAAAAAATAT+GGG | - | chr3_1:1195713-1195732 | None:intergenic | 25.0% |
| ! | AGTCACCACAAAAAAAAATA+TGG | - | chr3_1:1195714-1195733 | None:intergenic | 25.0% |
| ! | TATAGTATATGAAATGTCTG+GGG | - | chr3_1:1195747-1195766 | None:intergenic | 25.0% |
| ! | GTATAGTATATGAAATGTCT+GGG | - | chr3_1:1195748-1195767 | None:intergenic | 25.0% |
| ! | TGTATAGTATATGAAATGTC+TGG | - | chr3_1:1195749-1195768 | None:intergenic | 25.0% |
| !!! | CACAAATACCTTTTTTATCA+TGG | - | chr3_1:1196246-1196265 | None:intergenic | 25.0% |
| !!! | ATAAAAAAGGTATTTGTGCA+TGG | + | chr3_1:1196248-1196267 | Msa0343170:intron | 25.0% |
| !!! | TTAGCATTCTAGAATTTTGT+TGG | + | chr3_1:1196538-1196557 | Msa0343170:intron | 25.0% |
| !!! | TAAAGAGCAACTTTTGTTTT+TGG | - | chr3_1:1196944-1196963 | None:intergenic | 25.0% |
| ! | ATAAACAAAAACAGGTCATT+TGG | + | chr3_1:1197017-1197036 | Msa0343170:intron | 25.0% |
| !!! | GACAAGTATTTTGATGATTT+AGG | - | chr3_1:1197054-1197073 | None:intergenic | 25.0% |
| ! | CTATGTTAATCTATCTATGA+TGG | + | chr3_1:1197137-1197156 | Msa0343170:CDS | 25.0% |
| !! | TAAAGTAGCTTTTTAGATAG+TGG | + | chr3_1:1197873-1197892 | Msa0343170:intron | 25.0% |
| ! | AAAGCAAGCAAAAATAAGTA+GGG | - | chr3_1:1197904-1197923 | None:intergenic | 25.0% |
| ! | AAAAGCAAGCAAAAATAAGT+AGG | - | chr3_1:1197905-1197924 | None:intergenic | 25.0% |
| ! | TTGAAGAATAGTTAACTGTA+TGG | + | chr3_1:1197984-1198003 | Msa0343170:intron | 25.0% |
| ! | TAATAACATAATAGGCTAGT+GGG | - | chr3_1:1198292-1198311 | None:intergenic | 25.0% |
| !! | ACTAGCCTATTATGTTATTA+GGG | + | chr3_1:1198292-1198311 | Msa0343170:CDS | 25.0% |
| ! | TATGTCCCTAATAACATAAT+AGG | - | chr3_1:1198300-1198319 | None:intergenic | 25.0% |
| ! | ATTAGGGACATATTAAGAAA+AGG | + | chr3_1:1198308-1198327 | Msa0343170:CDS | 25.0% |
| ! | TCATGTAAGAACATAATTGT+TGG | - | chr3_1:1198407-1198426 | None:intergenic | 25.0% |
| ! | AAAATCGTATAACCTATTGT+AGG | + | chr3_1:1198528-1198547 | Msa0343170:CDS | 25.0% |
| ! | TCAAATCAGATTAAGTCAAA+CGG | - | chr3_1:1198709-1198728 | None:intergenic | 25.0% |
| ! | TCAAAGTTCAAATTTCAATC+GGG | - | chr3_1:1198753-1198772 | None:intergenic | 25.0% |
| ! | TCATACCAAAAGTAATATAC+TGG | + | chr3_1:1198842-1198861 | Msa0343170:intron | 25.0% |
| ! | AGTATGGCATTAAATATCAT+GGG | - | chr3_1:1198990-1199009 | None:intergenic | 25.0% |
| ! | TATATTAATTCAACTCTCCT+TGG | + | chr3_1:1199137-1199156 | Msa0343170:CDS | 25.0% |
| !!! | TTCTTTGAAATGTCTTTCAA+TGG | - | chr3_1:1199165-1199184 | None:intergenic | 25.0% |
| ! | CTAAAATAACAACTTTGCAT+AGG | - | chr3_1:1199260-1199279 | None:intergenic | 25.0% |
| !!! | TTTTGAAGACTACAACTTTA+TGG | + | chr3_1:1199483-1199502 | Msa0343170:three_prime_UTR | 25.0% |
| ! | TGGAACTTACATTTCAAATT+TGG | + | chr3_1:1199503-1199522 | Msa0343170:three_prime_UTR | 25.0% |
| ! | TTAATAGCACAATAATGGAG+AGG | - | chr3_1:1194852-1194871 | None:intergenic | 30.0% |
| GGTAGTTAATAGCACAATAA+TGG | - | chr3_1:1194857-1194876 | None:intergenic | 30.0% | |
| CAATGAACAACAAGAATTTC+TGG | - | chr3_1:1195081-1195100 | None:intergenic | 30.0% | |
| ATTAACCTCATTGCTCTTAA+TGG | + | chr3_1:1195142-1195161 | Msa0343170:CDS | 30.0% | |
| CCATCAAATATTCATTTAGC+TGG | - | chr3_1:1195319-1195338 | None:intergenic | 30.0% | |
| CCAGCTAAATGAATATTTGA+TGG | + | chr3_1:1195316-1195335 | Msa0343170:intron | 30.0% | |
| !! | TATTTTCCTTAGTTCTTGAG+TGG | + | chr3_1:1195454-1195473 | Msa0343170:intron | 30.0% |
| !!! | TGACCCCATATTTTTTTTTG+TGG | + | chr3_1:1195706-1195725 | Msa0343170:intron | 30.0% |
| CATTTCTTCATGAAAATAGC+TGG | + | chr3_1:1195995-1196014 | Msa0343170:intron | 30.0% | |
| !!! | TGCAAACTTTTGAAATGGAT+TGG | - | chr3_1:1196332-1196351 | None:intergenic | 30.0% |
| !! | AGCAATGCAAACTTTTGAAA+TGG | - | chr3_1:1196337-1196356 | None:intergenic | 30.0% |
| TTCAAAAGTTTGCATTGCTA+AGG | + | chr3_1:1196338-1196357 | Msa0343170:intron | 30.0% | |
| !! | GAAGTCAAAATCGTTTTAGA+CGG | - | chr3_1:1196981-1197000 | None:intergenic | 30.0% |
| TCAAAATACTTGTCTTGCAT+TGG | + | chr3_1:1197060-1197079 | Msa0343170:CDS | 30.0% | |
| TACTATCAAATATGACTGGA+AGG | + | chr3_1:1197200-1197219 | Msa0343170:CDS | 30.0% | |
| CTTTCTTTCTTTCTTACAGA+TGG | + | chr3_1:1197320-1197339 | Msa0343170:intron | 30.0% | |
| GGATAGTATATAGATAGAGT+TGG | - | chr3_1:1197395-1197414 | None:intergenic | 30.0% | |
| ACTCTATCTATATACTATCC+TGG | + | chr3_1:1197395-1197414 | Msa0343170:intron | 30.0% | |
| ! | CCATTCTTATATTTAAGACC+AGG | - | chr3_1:1197416-1197435 | None:intergenic | 30.0% |
| !! | CCTGGTCTTAAATATAAGAA+TGG | + | chr3_1:1197413-1197432 | Msa0343170:intron | 30.0% |
| !! | TAGCTTTTTAGATAGTGGTT+AGG | + | chr3_1:1197878-1197897 | Msa0343170:intron | 30.0% |
| CTTGATATTCTGCATATGTT+AGG | - | chr3_1:1198034-1198053 | None:intergenic | 30.0% | |
| AACCCAAGTCTTGATATTAT+TGG | + | chr3_1:1198064-1198083 | Msa0343170:CDS | 30.0% | |
| GTCCAATAATATCAAGACTT+GGG | - | chr3_1:1198069-1198088 | None:intergenic | 30.0% | |
| TGTCCAATAATATCAAGACT+TGG | - | chr3_1:1198070-1198089 | None:intergenic | 30.0% | |
| ATACCAAGAGATATCAAGAT+CGG | - | chr3_1:1198165-1198184 | None:intergenic | 30.0% | |
| ATCTTGATATCTCTTGGTAT+GGG | + | chr3_1:1198165-1198184 | Msa0343170:CDS | 30.0% | |
| ! | CAAATTCTTTTGTAGTCCTA+GGG | - | chr3_1:1198231-1198250 | None:intergenic | 30.0% |
| CTAGGACTACAAAAGAATTT+GGG | + | chr3_1:1198230-1198249 | Msa0343170:CDS | 30.0% | |
| TCATCTCTTTCAATCTCTTT+AGG | - | chr3_1:1198260-1198279 | None:intergenic | 30.0% | |
| AATAACATAATAGGCTAGTG+GGG | - | chr3_1:1198291-1198310 | None:intergenic | 30.0% | |
| CTAATAACATAATAGGCTAG+TGG | - | chr3_1:1198293-1198312 | None:intergenic | 30.0% | |
| ! | CACTAGCCTATTATGTTATT+AGG | + | chr3_1:1198291-1198310 | Msa0343170:CDS | 30.0% |
| TATAATTACGGGTCATAGTT+TGG | + | chr3_1:1198358-1198377 | Msa0343170:CDS | 30.0% | |
| ATAATTACGGGTCATAGTTT+GGG | + | chr3_1:1198359-1198378 | Msa0343170:CDS | 30.0% | |
| ! | ATGAGAAATTGTTGATTGAG+AGG | + | chr3_1:1198426-1198445 | Msa0343170:CDS | 30.0% |
| GCAATAAACAAACCTACAAT+AGG | - | chr3_1:1198543-1198562 | None:intergenic | 30.0% | |
| ATATGCTCTTCAAACACTTT+GGG | + | chr3_1:1198600-1198619 | Msa0343170:CDS | 30.0% | |
| ! | GTTTGACTTAATCTGATTTG+AGG | + | chr3_1:1198708-1198727 | Msa0343170:intron | 30.0% |
| CAAACATTATCTAGCTGAAA+GGG | - | chr3_1:1198799-1198818 | None:intergenic | 30.0% | |
| ACAAACATTATCTAGCTGAA+AGG | - | chr3_1:1198800-1198819 | None:intergenic | 30.0% | |
| TTCAGCTAGATAATGTTTGT+CGG | + | chr3_1:1198800-1198819 | Msa0343170:intron | 30.0% | |
| GGTGAAAAATAGTTCTTGTT+GGG | - | chr3_1:1198954-1198973 | None:intergenic | 30.0% | |
| AGGTGAAAAATAGTTCTTGT+TGG | - | chr3_1:1198955-1198974 | None:intergenic | 30.0% | |
| !! | ACAAGAACTATTTTTCACCT+TGG | + | chr3_1:1198955-1198974 | Msa0343170:CDS | 30.0% |
| CAGTATGGCATTAAATATCA+TGG | - | chr3_1:1198991-1199010 | None:intergenic | 30.0% | |
| CATGATATTTAATGCCATAC+TGG | + | chr3_1:1198989-1199008 | Msa0343170:CDS | 30.0% | |
| TTTACCATTGCCTATAGAAA+TGG | + | chr3_1:1199026-1199045 | Msa0343170:CDS | 30.0% | |
| !!! | GTTTCTCTTCTTTTTTAGGA+TGG | + | chr3_1:1199070-1199089 | Msa0343170:CDS | 30.0% |
| ! | TTTGAAACCTTCATTTCACT+TGG | - | chr3_1:1199430-1199449 | None:intergenic | 30.0% |
| !!! | AAAACATCGATTCACTTTTG+TGG | - | chr3_1:1199532-1199551 | None:intergenic | 30.0% |
| AAGACATGTGTTATGACTTA+TGG | - | chr3_1:1199595-1199614 | None:intergenic | 30.0% | |
| CTATTAACTACCTTAAGCCA+TGG | + | chr3_1:1194865-1194884 | Msa0343170:exon | 35.0% | |
| TCAAAGAAATGAGCATCTTC+TGG | - | chr3_1:1194938-1194957 | None:intergenic | 35.0% | |
| !!! | ATTTTATTTTCCCGGGACAT+AGG | + | chr3_1:1194968-1194987 | Msa0343170:CDS | 35.0% |
| !!! | TTTTATTTTCCCGGGACATA+GGG | + | chr3_1:1194969-1194988 | Msa0343170:CDS | 35.0% |
| TTTGTGGATAGTAATGCTGA+AGG | + | chr3_1:1195001-1195020 | Msa0343170:CDS | 35.0% | |
| ! | ACTTGCCAAGATTGGTTATT+GGG | + | chr3_1:1195108-1195127 | Msa0343170:CDS | 35.0% |
| ! | TTGAGTCTTTTACAAGTGTC+TGG | + | chr3_1:1195401-1195420 | Msa0343170:intron | 35.0% |
| ! | TCTTTTACAAGTGTCTGGTT+TGG | + | chr3_1:1195406-1195425 | Msa0343170:intron | 35.0% |
| AAGATCTGACCAATACACAT+GGG | - | chr3_1:1195489-1195508 | None:intergenic | 35.0% | |
| ! | TATGGGGTCACTAATTTTAC+CGG | - | chr3_1:1195696-1195715 | None:intergenic | 35.0% |
| ! | ATTTTTATTGTCGCATCGCA+TGG | - | chr3_1:1195933-1195952 | None:intergenic | 35.0% |
| ACGTAAACTTAAATGTGTGC+CGG | - | chr3_1:1196056-1196075 | None:intergenic | 35.0% | |
| ! | AAACAAGCTTTTGTGCATGA+TGG | - | chr3_1:1196130-1196149 | None:intergenic | 35.0% |
| CTTGTCTTGCATTGGAAATT+TGG | + | chr3_1:1197068-1197087 | Msa0343170:CDS | 35.0% | |
| TTTCTTACAGATGGAGTATG+TGG | + | chr3_1:1197329-1197348 | Msa0343170:intron | 35.0% | |
| TTCTTACAGATGGAGTATGT+GGG | + | chr3_1:1197330-1197349 | Msa0343170:intron | 35.0% | |
| ! | TAATATCAAGACTTGGGTTG+TGG | - | chr3_1:1198063-1198082 | None:intergenic | 35.0% |
| GATCTTGATATCTCTTGGTA+TGG | + | chr3_1:1198164-1198183 | Msa0343170:CDS | 35.0% | |
| ! | CCAAATTCTTTTGTAGTCCT+AGG | - | chr3_1:1198232-1198251 | None:intergenic | 35.0% |
| CCTAGGACTACAAAAGAATT+TGG | + | chr3_1:1198229-1198248 | Msa0343170:CDS | 35.0% | |
| GACTACAAAAGAATTTGGGT+TGG | + | chr3_1:1198234-1198253 | Msa0343170:CDS | 35.0% | |
| ! | GAAATTGTTGATTGAGAGGT+TGG | + | chr3_1:1198430-1198449 | Msa0343170:CDS | 35.0% |
| TTGGAAGGGATTTACACATT+TGG | + | chr3_1:1198449-1198468 | Msa0343170:CDS | 35.0% | |
| AGCATATCCTTATCATCGTA+GGG | - | chr3_1:1198587-1198606 | None:intergenic | 35.0% | |
| GATATGCTCTTCAAACACTT+TGG | + | chr3_1:1198599-1198618 | Msa0343170:CDS | 35.0% | |
| ! | GGATCTGCCTTTTCTTTAAT+AGG | + | chr3_1:1198621-1198640 | Msa0343170:CDS | 35.0% |
| CATAGCGCCTATTAAAGAAA+AGG | - | chr3_1:1198631-1198650 | None:intergenic | 35.0% | |
| ATCAGATTAAGTCAAACGGA+GGG | - | chr3_1:1198705-1198724 | None:intergenic | 35.0% | |
| AATCAGATTAAGTCAAACGG+AGG | - | chr3_1:1198706-1198725 | None:intergenic | 35.0% | |
| !!! | GGTGGTTTCTCTTCTTTTTT+AGG | + | chr3_1:1199066-1199085 | Msa0343170:CDS | 35.0% |
| !!! | CTCTTCTTTTTTAGGATGGT+TGG | + | chr3_1:1199074-1199093 | Msa0343170:CDS | 35.0% |
| !! | ATGGTTGGTTTACTAATTCC+AGG | + | chr3_1:1199089-1199108 | Msa0343170:CDS | 35.0% |
| AATGTCTTTCAATGGATCCA+AGG | - | chr3_1:1199157-1199176 | None:intergenic | 35.0% | |
| TGTTCTCTTCTCAAAGAGTT+AGG | + | chr3_1:1199319-1199338 | Msa0343170:three_prime_UTR | 35.0% | |
| !! | AAACGATGCTATAGTTCTAG+AGG | - | chr3_1:1199380-1199399 | None:intergenic | 35.0% |
| ATCGTTTCCAAGTGAAATGA+AGG | + | chr3_1:1199420-1199439 | Msa0343170:three_prime_UTR | 35.0% | |
| GAATGATTTAGGCTTATGAG+GGG | - | chr3_1:1199621-1199640 | None:intergenic | 35.0% | |
| GGAATGATTTAGGCTTATGA+GGG | - | chr3_1:1199622-1199641 | None:intergenic | 35.0% | |
| AGGAATGATTTAGGCTTATG+AGG | - | chr3_1:1199623-1199642 | None:intergenic | 35.0% | |
| ! | AATAATGGAGAGGAGAGGAA+AGG | - | chr3_1:1194842-1194861 | None:intergenic | 40.0% |
| ATGGCTTCTACTTGCGATAA+GGG | + | chr3_1:1194884-1194903 | Msa0343170:CDS | 40.0% | |
| CATAGGGCATAGGAAATTTG+TGG | + | chr3_1:1194985-1195004 | Msa0343170:CDS | 40.0% | |
| TAGTAATGCTGAAGGAGATG+TGG | + | chr3_1:1195009-1195028 | Msa0343170:CDS | 40.0% | |
| CAATAACCAATCTTGGCAAG+TGG | - | chr3_1:1195109-1195128 | None:intergenic | 40.0% | |
| ! | CACTTGCCAAGATTGGTTAT+TGG | + | chr3_1:1195107-1195126 | Msa0343170:CDS | 40.0% |
| CTCAACCCAATAACCAATCT+TGG | - | chr3_1:1195116-1195135 | None:intergenic | 40.0% | |
| AACCTCATTGCTCTTAATGG+AGG | + | chr3_1:1195145-1195164 | Msa0343170:CDS | 40.0% | |
| TTCCTCCATTAAGAGCAATG+AGG | - | chr3_1:1195150-1195169 | None:intergenic | 40.0% | |
| AAGACTCAAATTGCCTGCTT+GGG | - | chr3_1:1195390-1195409 | None:intergenic | 40.0% | |
| AAAGACTCAAATTGCCTGCT+TGG | - | chr3_1:1195391-1195410 | None:intergenic | 40.0% | |
| CCAAATACAAGCAACGAAAC+AGG | - | chr3_1:1195432-1195451 | None:intergenic | 40.0% | |
| CCTGTTTCGTTGCTTGTATT+TGG | + | chr3_1:1195429-1195448 | Msa0343170:intron | 40.0% | |
| CAAGATCTGACCAATACACA+TGG | - | chr3_1:1195490-1195509 | None:intergenic | 40.0% | |
| ! | TCACTAATTTTACCGGGACA+AGG | - | chr3_1:1195689-1195708 | None:intergenic | 40.0% |
| ! | ATGGGGTCACTAATTTTACC+GGG | - | chr3_1:1195695-1195714 | None:intergenic | 40.0% |
| ATAGCTGGCAAAGTAGCATA+AGG | + | chr3_1:1196010-1196029 | Msa0343170:intron | 40.0% | |
| TAGCTGGCAAAGTAGCATAA+GGG | + | chr3_1:1196011-1196030 | Msa0343170:intron | 40.0% | |
| AAGTTTGCATTGCTAAGGTG+AGG | + | chr3_1:1196343-1196362 | Msa0343170:intron | 40.0% | |
| !!! | ATGTGGGATTTTTTGACTGC+TGG | + | chr3_1:1197346-1197365 | Msa0343170:CDS | 40.0% |
| !!! | GGATTTTTTGACTGCTGGAA+TGG | + | chr3_1:1197351-1197370 | Msa0343170:CDS | 40.0% |
| ! | ACTTATGTGGTGGCTTTTAG+AGG | + | chr3_1:1198107-1198126 | Msa0343170:CDS | 40.0% |
| ! | TTGTTGATTGAGAGGTTGGA+AGG | + | chr3_1:1198434-1198453 | Msa0343170:CDS | 40.0% |
| ! | TGTTGATTGAGAGGTTGGAA+GGG | + | chr3_1:1198435-1198454 | Msa0343170:CDS | 40.0% |
| ACATTTGGACAACCAAGAGT+TGG | + | chr3_1:1198464-1198483 | Msa0343170:CDS | 40.0% | |
| TATCTCTCATCTCCAACTCT+TGG | - | chr3_1:1198479-1198498 | None:intergenic | 40.0% | |
| ATTGCAATGACGTTGTTCCA+AGG | + | chr3_1:1198558-1198577 | Msa0343170:CDS | 40.0% | |
| GAGCATATCCTTATCATCGT+AGG | - | chr3_1:1198588-1198607 | None:intergenic | 40.0% | |
| TAATAGGCGCTATGAACTCA+AGG | + | chr3_1:1198637-1198656 | Msa0343170:CDS | 40.0% | |
| GTTCAAATTTCAATCGGGAG+AGG | - | chr3_1:1198748-1198767 | None:intergenic | 40.0% | |
| AGGGTTAGAATCTCATAACG+TGG | - | chr3_1:1198780-1198799 | None:intergenic | 40.0% | |
| ATCATGGGTATTACACACCA+AGG | - | chr3_1:1198975-1198994 | None:intergenic | 40.0% | |
| ATGCCATACTGGAACTCATA+AGG | + | chr3_1:1199000-1199019 | Msa0343170:CDS | 40.0% | |
| AGGTCCATTTCTATAGGCAA+TGG | - | chr3_1:1199033-1199052 | None:intergenic | 40.0% | |
| GTAGTGAGGTCCATTTCTAT+AGG | - | chr3_1:1199039-1199058 | None:intergenic | 40.0% | |
| TCTTCTCAAAGAGTTAGGCA+TGG | + | chr3_1:1199324-1199343 | Msa0343170:three_prime_UTR | 40.0% | |
| GTCAAGACACTCACAACCAT+AGG | + | chr3_1:1194790-1194809 | Msa0343170:five_prime_UTR | 45.0% | |
| ! | AGCACAATAATGGAGAGGAG+AGG | - | chr3_1:1194847-1194866 | None:intergenic | 45.0% |
| CAAGTAGAAGCCATGGCTTA+AGG | - | chr3_1:1194878-1194897 | None:intergenic | 45.0% | |
| CTTATCGCAAGTAGAAGCCA+TGG | - | chr3_1:1194885-1194904 | None:intergenic | 45.0% | |
| CATGGCTTCTACTTGCGATA+AGG | + | chr3_1:1194883-1194902 | Msa0343170:exon | 45.0% | |
| ATTTCCTATGCCCTATGTCC+CGG | - | chr3_1:1194982-1195001 | None:intergenic | 45.0% | |
| TAATGCTGAAGGAGATGTGG+AGG | + | chr3_1:1195012-1195031 | Msa0343170:CDS | 45.0% | |
| AATGCTGAAGGAGATGTGGA+GGG | + | chr3_1:1195013-1195032 | Msa0343170:CDS | 45.0% | |
| AGGGAAGTTTCAGAGGTAGA+TGG | + | chr3_1:1195032-1195051 | Msa0343170:CDS | 45.0% | |
| GCTAAACCACTTGCCAAGAT+TGG | + | chr3_1:1195100-1195119 | Msa0343170:CDS | 45.0% | |
| GAAGAGCCACTCAAGAACTA+AGG | - | chr3_1:1195463-1195482 | None:intergenic | 45.0% | |
| CTCTTCTGTCCCATGTGTAT+TGG | + | chr3_1:1195477-1195496 | Msa0343170:intron | 45.0% | |
| AGCTGGCAAAGTAGCATAAG+GGG | + | chr3_1:1196012-1196031 | Msa0343170:intron | 45.0% | |
| AAGGGGGTCTATATGCATCA+TGG | + | chr3_1:1196029-1196048 | Msa0343170:intron | 45.0% | |
| GGTCTATATGCATCATGGTC+CGG | + | chr3_1:1196034-1196053 | Msa0343170:intron | 45.0% | |
| TAAGGACCGTGACACTTATG+TGG | + | chr3_1:1198094-1198113 | Msa0343170:CDS | 45.0% | |
| AAGCCACCACATAAGTGTCA+CGG | - | chr3_1:1198103-1198122 | None:intergenic | 45.0% | |
| AACCCTTTGATGCAGATGCA+TGG | + | chr3_1:1198135-1198154 | Msa0343170:CDS | 45.0% | |
| CACCATGCATCTGCATCAAA+GGG | - | chr3_1:1198140-1198159 | None:intergenic | 45.0% | |
| ! | GCACCGATCTTGATATCTCT+TGG | + | chr3_1:1198159-1198178 | Msa0343170:CDS | 45.0% |
| ATCTCTTGGTATGGGATTCC+CGG | + | chr3_1:1198173-1198192 | Msa0343170:CDS | 45.0% | |
| ATTACGGGTCATAGTTTGGG+TGG | + | chr3_1:1198362-1198381 | Msa0343170:CDS | 45.0% | |
| TTATCATCGTAGGGCAACCT+TGG | - | chr3_1:1198578-1198597 | None:intergenic | 45.0% | |
| AAGGTTGCCCTACGATGATA+AGG | + | chr3_1:1198577-1198596 | Msa0343170:CDS | 45.0% | |
| GCTCCTTATGAGTTCCAGTA+TGG | - | chr3_1:1199006-1199025 | None:intergenic | 45.0% | |
| AATGGACCTCACTACAGAGA+AGG | + | chr3_1:1199044-1199063 | Msa0343170:CDS | 45.0% | |
| ATGGACCTCACTACAGAGAA+GGG | + | chr3_1:1199045-1199064 | Msa0343170:CDS | 45.0% | |
| ATTCCAGGATTACCTGCTCA+TGG | + | chr3_1:1199104-1199123 | Msa0343170:CDS | 45.0% | |
| TGATTTAGGCTTATGAGGGG+AGG | - | chr3_1:1199618-1199637 | None:intergenic | 45.0% | |
| !!! | AATTTTTCTTAATTTTTTAA+AGG | - | chr3_1:1196516-1196535 | None:intergenic | 5.0% |
| !!! | TTATAAAATAATTTTTAAGA+AGG | + | chr3_1:1196798-1196817 | Msa0343170:intron | 5.0% |
| !!! | TAAAAAATATTTTCATAAAA+AGG | - | chr3_1:1197607-1197626 | None:intergenic | 5.0% |
| TTTCCTATGCCCTATGTCCC+GGG | - | chr3_1:1194981-1195000 | None:intergenic | 50.0% | |
| GATGTGGAGGGAAGTTTCAG+AGG | + | chr3_1:1195025-1195044 | Msa0343170:CDS | 50.0% | |
| ATCAGATCTCAGTCCCAAGC+AGG | + | chr3_1:1195374-1195393 | Msa0343170:intron | 50.0% | |
| ACTCGTGAGCTTAGCTCAGT+TGG | - | chr3_1:1195781-1195800 | None:intergenic | 50.0% | |
| TGTCGCATCGCATGGACATA+GGG | - | chr3_1:1195925-1195944 | None:intergenic | 50.0% | |
| TTGTCGCATCGCATGGACAT+AGG | - | chr3_1:1195926-1195945 | None:intergenic | 50.0% | |
| GCTGGCAAAGTAGCATAAGG+GGG | + | chr3_1:1196013-1196032 | Msa0343170:intron | 50.0% | |
| CTTGACGCTTGAGAATGTCG+AGG | - | chr3_1:1197107-1197126 | None:intergenic | 50.0% | |
| GCACCATGCATCTGCATCAA+AGG | - | chr3_1:1198141-1198160 | None:intergenic | 50.0% | |
| ! | GGTGGATTCATGAAAGCCCT+AGG | + | chr3_1:1198212-1198231 | Msa0343170:CDS | 50.0% |
| TCAATCGGGAGAGGTCGTTT+CGG | - | chr3_1:1198739-1198758 | None:intergenic | 50.0% | |
| AACCACCCTTCTCTGTAGTG+AGG | - | chr3_1:1199053-1199072 | None:intergenic | 50.0% | |
| TAATCTTGGGGACCATGAGC+AGG | - | chr3_1:1199119-1199138 | None:intergenic | 50.0% | |
| TTTCCCGGGACATAGGGCAT+AGG | + | chr3_1:1194975-1194994 | Msa0343170:CDS | 55.0% | |
| AGCTAAGCTCACGAGTCACG+AGG | + | chr3_1:1195785-1195804 | Msa0343170:intron | 55.0% | |
| GGACCGTGACACTTATGTGG+TGG | + | chr3_1:1198097-1198116 | Msa0343170:CDS | 55.0% | |
| TGGTATGGGATTCCCGGTGT+TGG | + | chr3_1:1198179-1198198 | Msa0343170:CDS | 55.0% | |
| ACCGTGTGCTCTTCCAACAC+CGG | - | chr3_1:1198195-1198214 | None:intergenic | 55.0% | |
| GACCTCACTACAGAGAAGGG+TGG | + | chr3_1:1199048-1199067 | Msa0343170:CDS | 55.0% | |
| GGACCATGAGCAGGTAATCC+TGG | - | chr3_1:1199110-1199129 | None:intergenic | 55.0% | |
| CGCATCGCATGGACATAGGG+TGG | - | chr3_1:1195922-1195941 | None:intergenic | 60.0% | |
| CCGTGTGCTCTTCCAACACC+GGG | - | chr3_1:1198194-1198213 | None:intergenic | 60.0% | |
| ! | CCCGGTGTTGGAAGAGCACA+CGG | + | chr3_1:1198191-1198210 | Msa0343170:CDS | 60.0% |
| ! | GGTGTTGGAAGAGCACACGG+TGG | + | chr3_1:1198194-1198213 | Msa0343170:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 1194783 | 1199643 | 1194783 | ID=Msa0343170;Name=Msa0343170 |
| chr3_1 | mRNA | 1194783 | 1199643 | 1194783 | ID=Msa0343170-mRNA-1;Parent=Msa0343170;Name=Msa0343170-mRNA-1;_AED=0.07;_eAED=0.07;_QI=101|1|1|1|1|1|5|453|469 |
| chr3_1 | exon | 1194783 | 1195199 | 1194783 | ID=Msa0343170-mRNA-1:exon:401;Parent=Msa0343170-mRNA-1 |
| chr3_1 | exon | 1197031 | 1197221 | 1197031 | ID=Msa0343170-mRNA-1:exon:402;Parent=Msa0343170-mRNA-1 |
| chr3_1 | exon | 1197339 | 1197372 | 1197339 | ID=Msa0343170-mRNA-1:exon:403;Parent=Msa0343170-mRNA-1 |
| chr3_1 | exon | 1198045 | 1198658 | 1198045 | ID=Msa0343170-mRNA-1:exon:404;Parent=Msa0343170-mRNA-1 |
| chr3_1 | exon | 1198936 | 1199643 | 1198936 | ID=Msa0343170-mRNA-1:exon:405;Parent=Msa0343170-mRNA-1 |
| chr3_1 | five_prime_UTR | 1194783 | 1194883 | 1194783 | ID=Msa0343170-mRNA-1:five_prime_utr;Parent=Msa0343170-mRNA-1 |
| chr3_1 | CDS | 1194884 | 1195199 | 1194884 | ID=Msa0343170-mRNA-1:cds;Parent=Msa0343170-mRNA-1 |
| chr3_1 | CDS | 1197031 | 1197221 | 1197031 | ID=Msa0343170-mRNA-1:cds;Parent=Msa0343170-mRNA-1 |
| chr3_1 | CDS | 1197339 | 1197372 | 1197339 | ID=Msa0343170-mRNA-1:cds;Parent=Msa0343170-mRNA-1 |
| chr3_1 | CDS | 1198045 | 1198658 | 1198045 | ID=Msa0343170-mRNA-1:cds;Parent=Msa0343170-mRNA-1 |
| chr3_1 | CDS | 1198936 | 1199190 | 1198936 | ID=Msa0343170-mRNA-1:cds;Parent=Msa0343170-mRNA-1 |
| chr3_1 | three_prime_UTR | 1199191 | 1199643 | 1199191 | ID=Msa0343170-mRNA-1:three_prime_utr;Parent=Msa0343170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
