Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836480 | XP_003611733.1 | 97.441 | 469 | 12 | 0 | 1 | 469 | 1 | 469 | 0.0 | 952 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836480 | sp|F4JFU8|OBL1_ARATH | 38.723 | 501 | 265 | 7 | 2 | 460 | 8 | 508 | 2.05e-119 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836480 | G7K6N4 | 97.441 | 469 | 12 | 0 | 1 | 469 | 1 | 469 | 0.0 | 952 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081520 | Msa0836480 | 0.805434 | 1.337465e-49 | -8.615850e-47 |
| Msa0626450 | Msa0836480 | 0.803187 | 3.928845e-49 | -8.615850e-47 |
| Msa0626490 | Msa0836480 | 0.808919 | 2.444437e-50 | -8.615850e-47 |
| Msa0664600 | Msa0836480 | 0.805332 | 1.404905e-49 | -8.615850e-47 |
| Msa0714910 | Msa0836480 | 0.825703 | 4.057484e-54 | -8.615850e-47 |
| Msa0756920 | Msa0836480 | 0.988188 | 4.766605e-173 | -8.615850e-47 |
| Msa0836480 | Msa1152510 | 0.805730 | 1.159426e-49 | -8.615850e-47 |
| Msa0836480 | Msa1321050 | 0.800279 | 1.553070e-48 | -8.615850e-47 |
| Msa0836480 | Msa1356830 | 0.808265 | 3.371188e-50 | -8.615850e-47 |
| Msa0836480 | Msa1437940 | 0.804091 | 2.551238e-49 | -8.615850e-47 |
| Msa0173890 | Msa0836480 | 0.814633 | 1.394570e-51 | -8.615850e-47 |
| Msa0343170 | Msa0836480 | 0.983794 | 9.980329e-159 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836480 | MtrunA17_Chr5g0402171 | 97.441 | 469 | 12 | 0 | 1 | 469 | 1 | 469 | 0.0 | 952 |
| Msa0836480 | MtrunA17_Chr1g0153271 | 48.684 | 456 | 231 | 3 | 13 | 467 | 11 | 464 | 1.84e-159 | 459 |
| Msa0836480 | MtrunA17_Chr7g0276561 | 39.752 | 483 | 256 | 6 | 13 | 460 | 8 | 490 | 2.23e-121 | 363 |
| Msa0836480 | MtrunA17_Chr3g0123741 | 53.357 | 283 | 111 | 2 | 181 | 462 | 37 | 299 | 8.37e-105 | 314 |
| Msa0836480 | MtrunA17_Chr3g0123751 | 41.964 | 112 | 52 | 3 | 73 | 171 | 30 | 141 | 1.48e-16 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0836480 | AT5G42930.1 | 50.985 | 457 | 217 | 4 | 12 | 462 | 6 | 461 | 4.95e-169 | 484 |
| Msa0836480 | AT1G56630.1 | 48.932 | 468 | 219 | 6 | 12 | 461 | 6 | 471 | 8.53e-158 | 456 |
| Msa0836480 | AT5G67050.1 | 47.436 | 468 | 231 | 7 | 1 | 459 | 1 | 462 | 6.51e-157 | 454 |
| Msa0836480 | AT5G42930.2 | 48.556 | 381 | 189 | 4 | 12 | 386 | 6 | 385 | 2.32e-133 | 391 |
| Msa0836480 | AT1G45201.1 | 44.635 | 466 | 251 | 5 | 3 | 464 | 2 | 464 | 2.40e-131 | 389 |
| Msa0836480 | AT1G45201.3 | 44.635 | 466 | 251 | 5 | 3 | 464 | 27 | 489 | 4.01e-131 | 389 |
| Msa0836480 | AT3G14360.1 | 38.723 | 501 | 265 | 7 | 2 | 460 | 8 | 508 | 2.08e-120 | 362 |
| Msa0836480 | AT1G45201.2 | 45.501 | 389 | 203 | 6 | 3 | 386 | 2 | 386 | 3.51e-106 | 321 |
Find 136 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTTGATAGTATATTTA+AGG | 0.110916 | 5_4:-9976146 | None:intergenic |
| CCTAGGACTACAAAAGAATT+TGG | 0.130121 | 5_4:+9977186 | Msa0836480:CDS |
| GATATTATTGGACAAATTTA+AGG | 0.140061 | 5_4:+9977033 | Msa0836480:CDS |
| CTTGTCTTGCATTGGAAATT+TGG | 0.140513 | 5_4:+9976023 | Msa0836480:CDS |
| TGGAACTTACATTTCAAATT+TGG | 0.161115 | 5_4:+9978460 | Msa0836480:three_prime_UTR |
| ATTAACCTCATTGCTCTTAA+TGG | 0.184975 | 5_4:+9973998 | Msa0836480:CDS |
| TCAAAATTCAACAATATTAT+AGG | 0.188034 | 5_4:+9978402 | Msa0836480:three_prime_UTR |
| CACTAGCCTATTATGTTATT+AGG | 0.196321 | 5_4:+9977248 | Msa0836480:CDS |
| CAATGAACAACAAGAATTTC+TGG | 0.201915 | 5_4:-9973934 | None:intergenic |
| AACCCAAGTCTTGATATTAT+TGG | 0.213124 | 5_4:+9977021 | Msa0836480:CDS |
| CACTTGCCAAGATTGGTTAT+TGG | 0.262528 | 5_4:+9973963 | Msa0836480:CDS |
| TATAATTACGGGTCATAGTT+TGG | 0.267812 | 5_4:+9977315 | Msa0836480:CDS |
| TCATCTCTTTCAATCTCTTT+AGG | 0.270056 | 5_4:-9977214 | None:intergenic |
| TCTATTATGAGGAATGATTT+AGG | 0.281682 | 5_4:-9978586 | None:intergenic |
| TAATGCAAAGTTTATAATTA+CGG | 0.300822 | 5_4:+9977303 | Msa0836480:CDS |
| ACTTGCCAAGATTGGTTATT+GGG | 0.319969 | 5_4:+9973964 | Msa0836480:CDS |
| TCAAAGAAATGAGCATCTTC+TGG | 0.331571 | 5_4:-9973791 | None:intergenic |
| ACTAGCCTATTATGTTATTA+GGG | 0.331798 | 5_4:+9977249 | Msa0836480:CDS |
| ATCTCTTGGTATGGGATTCC+CGG | 0.333988 | 5_4:+9977130 | Msa0836480:CDS |
| ATGGTTGGTTTACTAATTCC+AGG | 0.346840 | 5_4:+9978046 | Msa0836480:CDS |
| GTAATTATAAACTTTGCATT+AGG | 0.348338 | 5_4:-9977301 | None:intergenic |
| TGTTCTCTTCTCAAAGAGTT+AGG | 0.352505 | 5_4:+9978276 | Msa0836480:three_prime_UTR |
| AATGCAAAGTTTATAATTAC+GGG | 0.356213 | 5_4:+9977304 | Msa0836480:CDS |
| TATGTCCCTAATAACATAAT+AGG | 0.359007 | 5_4:-9977254 | None:intergenic |
| TTCTTTGAAATGTCTTTCAA+TGG | 0.359014 | 5_4:-9978119 | None:intergenic |
| GGTAGTTAATAGCACAATAA+TGG | 0.360302 | 5_4:-9973710 | None:intergenic |
| AAGACATGTGTTATGACTTA+TGG | 0.368603 | 5_4:-9978549 | None:intergenic |
| AGGAATGATTTAGGCTTATG+AGG | 0.381367 | 5_4:-9978577 | None:intergenic |
| GCTAAACCACTTGCCAAGAT+TGG | 0.383519 | 5_4:+9973956 | Msa0836480:CDS |
| ATAATTACGGGTCATAGTTT+GGG | 0.384486 | 5_4:+9977316 | Msa0836480:CDS |
| AGTTGAATTAATATAATCTT+GGG | 0.390448 | 5_4:-9978086 | None:intergenic |
| ATATGCTCTTCAAACACTTT+GGG | 0.390714 | 5_4:+9977557 | Msa0836480:CDS |
| TTTACCATTGCCTATAGAAA+TGG | 0.395799 | 5_4:+9977983 | Msa0836480:CDS |
| CATGATATTTAATGCCATAC+TGG | 0.399831 | 5_4:+9977946 | Msa0836480:CDS |
| TCAAAATACTTGTCTTGCAT+TGG | 0.400909 | 5_4:+9976015 | Msa0836480:CDS |
| CAGTATGGCATTAAATATCA+TGG | 0.402639 | 5_4:-9977945 | None:intergenic |
| CTAGGACTACAAAAGAATTT+GGG | 0.404063 | 5_4:+9977187 | Msa0836480:CDS |
| TATATTAATTCAACTCTCCT+TGG | 0.404606 | 5_4:+9978094 | Msa0836480:CDS |
| ATGGCTTCTACTTGCGATAA+GGG | 0.405244 | 5_4:+9973740 | Msa0836480:CDS |
| GATATGCTCTTCAAACACTT+TGG | 0.411572 | 5_4:+9977556 | Msa0836480:CDS |
| TTGGAAGGGATTTACACATT+TGG | 0.413556 | 5_4:+9977406 | Msa0836480:CDS |
| GATCTTGATATCTCTTGGTA+TGG | 0.418281 | 5_4:+9977121 | Msa0836480:CDS |
| GAGTTGAATTAATATAATCT+TGG | 0.418572 | 5_4:-9978087 | None:intergenic |
| CATGGCTTCTACTTGCGATA+AGG | 0.419594 | 5_4:+9973739 | Msa0836480:exon |
| GCAATAAACAAACCTACAAT+AGG | 0.419899 | 5_4:-9977497 | None:intergenic |
| ATTATAATTAACTTTCTCTC+AGG | 0.423060 | 5_4:+9974034 | Msa0836480:CDS |
| ATCGTTTCCAAGTGAAATGA+AGG | 0.424425 | 5_4:+9978377 | Msa0836480:three_prime_UTR |
| TCATGTAAGAACATAATTGT+TGG | 0.426080 | 5_4:-9977361 | None:intergenic |
| GCTCCTTATGAGTTCCAGTA+TGG | 0.438651 | 5_4:-9977960 | None:intergenic |
| GAAATTGTTGATTGAGAGGT+TGG | 0.442736 | 5_4:+9977387 | Msa0836480:CDS |
| CTCAACCCAATAACCAATCT+TGG | 0.446288 | 5_4:-9973969 | None:intergenic |
| ATTTCCTATGCCCTATGTCC+CGG | 0.451521 | 5_4:-9973835 | None:intergenic |
| ATTAGGGACATATTAAGAAA+AGG | 0.454297 | 5_4:+9977265 | Msa0836480:CDS |
| AAAATCGTATAACCTATTGT+AGG | 0.457710 | 5_4:+9977485 | Msa0836480:CDS |
| CTAAAATAACAACTTTGCAT+TGG | 0.458839 | 5_4:-9978214 | None:intergenic |
| TTTCTTACAGATGGAGTATG+TGG | 0.459644 | 5_4:+9976284 | Msa0836480:intron |
| TATCTCTCATCTCCAACTCT+TGG | 0.464603 | 5_4:-9977433 | None:intergenic |
| GGAATGATTTAGGCTTATGA+GGG | 0.465369 | 5_4:-9978576 | None:intergenic |
| TTGTTGATTGAGAGGTTGGA+AGG | 0.470831 | 5_4:+9977391 | Msa0836480:CDS |
| GGACCATGAGCAGGTAATCC+TGG | 0.476008 | 5_4:-9978064 | None:intergenic |
| GCACCATGCATCTGCATCAA+AGG | 0.477633 | 5_4:-9977095 | None:intergenic |
| GTAGTGAGGTCCATTTCTAT+AGG | 0.479877 | 5_4:-9977993 | None:intergenic |
| GCACCGATCTTGATATCTCT+TGG | 0.481432 | 5_4:+9977116 | Msa0836480:CDS |
| CAAGTAGAAGCCATGGCTTA+AGG | 0.481455 | 5_4:-9973731 | None:intergenic |
| ATGCCATACTGGAACTCATA+AGG | 0.484427 | 5_4:+9977957 | Msa0836480:CDS |
| CATAGCGCCTATTAAAGAAA+AGG | 0.484819 | 5_4:-9977585 | None:intergenic |
| TTTGAAACCTTCATTTCACT+TGG | 0.488794 | 5_4:-9978384 | None:intergenic |
| CTATGTTAATCTATCTATGA+TGG | 0.490863 | 5_4:+9976092 | Msa0836480:CDS |
| AGGGAAGTTTCAGAGGTAGA+TGG | 0.492187 | 5_4:+9973888 | Msa0836480:CDS |
| GTCCAATAATATCAAGACTT+GGG | 0.497259 | 5_4:-9977023 | None:intergenic |
| TGTCCAATAATATCAAGACT+TGG | 0.500256 | 5_4:-9977024 | None:intergenic |
| GAGAAAGTTAATTATAATCA+TGG | 0.501031 | 5_4:-9974029 | None:intergenic |
| AAGGTTGCCCTACGATGATA+AGG | 0.503975 | 5_4:+9977534 | Msa0836480:CDS |
| GATGTGGAGGGAAGTTTCAG+AGG | 0.504440 | 5_4:+9973881 | Msa0836480:CDS |
| CATAGGGCATAGGAAATTTG+TGG | 0.508090 | 5_4:+9973841 | Msa0836480:CDS |
| ACATTTGGACAACCAAGAGT+TGG | 0.512602 | 5_4:+9977421 | Msa0836480:CDS |
| TTATCATCGTAGGGCAACCT+TGG | 0.514640 | 5_4:-9977532 | None:intergenic |
| AATATACTATCAAATATGAC+TGG | 0.515887 | 5_4:+9976151 | Msa0836480:CDS |
| TGGTATGGGATTCCCGGTGT+TGG | 0.520545 | 5_4:+9977136 | Msa0836480:CDS |
| ATCTTGATATCTCTTGGTAT+GGG | 0.521138 | 5_4:+9977122 | Msa0836480:CDS |
| CACCATGCATCTGCATCAAA+GGG | 0.523948 | 5_4:-9977094 | None:intergenic |
| TAATAACATAATAGGCTAGT+GGG | 0.524972 | 5_4:-9977246 | None:intergenic |
| TAATATCAAGACTTGGGTTG+TGG | 0.526921 | 5_4:-9977017 | None:intergenic |
| TGTTGATTGAGAGGTTGGAA+GGG | 0.531128 | 5_4:+9977392 | Msa0836480:CDS |
| TAATCTTGGGGACCATGAGC+AGG | 0.531416 | 5_4:-9978073 | None:intergenic |
| TTTCCTATGCCCTATGTCCC+GGG | 0.534655 | 5_4:-9973834 | None:intergenic |
| TTCTTACAGATGGAGTATGT+GGG | 0.535001 | 5_4:+9976285 | Msa0836480:intron |
| GAGCATATCCTTATCATCGT+AGG | 0.536248 | 5_4:-9977542 | None:intergenic |
| TGATTTAGGCTTATGAGGGG+AGG | 0.546732 | 5_4:-9978572 | None:intergenic |
| TAAGGACCGTGACACTTATG+TGG | 0.548736 | 5_4:+9977051 | Msa0836480:CDS |
| AGCATATCCTTATCATCGTA+GGG | 0.559509 | 5_4:-9977541 | None:intergenic |
| TACTATCAAATATGACTGGA+AGG | 0.569156 | 5_4:+9976155 | Msa0836480:CDS |
| ATGAGAAATTGTTGATTGAG+AGG | 0.569804 | 5_4:+9977383 | Msa0836480:CDS |
| AATGTCTTTCAATGGATCCA+AGG | 0.570092 | 5_4:-9978111 | None:intergenic |
| CCGTGTGCTCTTCCAACACC+GGG | 0.570804 | 5_4:-9977148 | None:intergenic |
| CTTGACGCTTGAGAATGTCG+AGG | 0.572164 | 5_4:-9976059 | None:intergenic |
| TAATGCTGAAGGAGATGTGG+AGG | 0.574281 | 5_4:+9973868 | Msa0836480:CDS |
| AACCTCATTGCTCTTAATGG+AGG | 0.577915 | 5_4:+9974001 | Msa0836480:CDS |
| CTATTAACTACCTTAAGCCA+TGG | 0.578599 | 5_4:+9973721 | Msa0836480:exon |
| GACTACAAAAGAATTTGGGT+TGG | 0.579558 | 5_4:+9977191 | Msa0836480:CDS |
| AGTATGGCATTAAATATCAT+GGG | 0.582068 | 5_4:-9977944 | None:intergenic |
| ACCGTGTGCTCTTCCAACAC+CGG | 0.586541 | 5_4:-9977149 | None:intergenic |
| CCCGGTGTTGGAAGAGCACA+CGG | 0.587015 | 5_4:+9977148 | Msa0836480:CDS |
| ATTGCAATGACGTTGTTCCA+AGG | 0.588263 | 5_4:+9977515 | Msa0836480:CDS |
| TCTTCTCAAAGAGTTAGGCA+TGG | 0.589207 | 5_4:+9978281 | Msa0836480:three_prime_UTR |
| CAATAACCAATCTTGGCAAG+TGG | 0.589271 | 5_4:-9973962 | None:intergenic |
| TAATAGGCGCTATGAACTCA+AGG | 0.589923 | 5_4:+9977594 | Msa0836480:CDS |
| CTAATAACATAATAGGCTAG+TGG | 0.592254 | 5_4:-9977247 | None:intergenic |
| TTTCCCGGGACATAGGGCAT+AGG | 0.592932 | 5_4:+9973831 | Msa0836480:CDS |
| AATGGACCTCACTACAGAGA+AGG | 0.595853 | 5_4:+9978001 | Msa0836480:CDS |
| ATTCCAGGATTACCTGCTCA+TGG | 0.596826 | 5_4:+9978061 | Msa0836480:CDS |
| AGGTCCATTTCTATAGGCAA+TGG | 0.597360 | 5_4:-9977987 | None:intergenic |
| ATTACGGGTCATAGTTTGGG+TGG | 0.597647 | 5_4:+9977319 | Msa0836480:CDS |
| AAACGATGCTATAGTTCTAG+AGG | 0.601264 | 5_4:-9978334 | None:intergenic |
| ATGGACCTCACTACAGAGAA+GGG | 0.604978 | 5_4:+9978002 | Msa0836480:CDS |
| CTTATCGCAAGTAGAAGCCA+TGG | 0.610270 | 5_4:-9973738 | None:intergenic |
| AATGCTGAAGGAGATGTGGA+GGG | 0.614108 | 5_4:+9973869 | Msa0836480:CDS |
| GTCAAGACACTCACAACCAT+AGG | 0.616784 | 5_4:+9973646 | Msa0836480:five_prime_UTR |
| ATACCAAGAGATATCAAGAT+CGG | 0.620912 | 5_4:-9977119 | None:intergenic |
| TAGTAATGCTGAAGGAGATG+TGG | 0.621964 | 5_4:+9973865 | Msa0836480:CDS |
| GGTGGATTCATGAAAGCCCT+AGG | 0.622022 | 5_4:+9977169 | Msa0836480:CDS |
| AATAATGGAGAGGAGAGGAA+AGG | 0.627315 | 5_4:-9973695 | None:intergenic |
| TTTGTGGATAGTAATGCTGA+AGG | 0.630116 | 5_4:+9973857 | Msa0836480:CDS |
| AACCCTTTGATGCAGATGCA+TGG | 0.632417 | 5_4:+9977092 | Msa0836480:CDS |
| GTTGAATTAATATAATCTTG+GGG | 0.644078 | 5_4:-9978085 | None:intergenic |
| AATAACATAATAGGCTAGTG+GGG | 0.646861 | 5_4:-9977245 | None:intergenic |
| GGACCGTGACACTTATGTGG+TGG | 0.649989 | 5_4:+9977054 | Msa0836480:CDS |
| TTAATAGCACAATAATGGAG+AGG | 0.659188 | 5_4:-9973705 | None:intergenic |
| GAATGATTTAGGCTTATGAG+GGG | 0.664880 | 5_4:-9978575 | None:intergenic |
| ATCATGGGTATTACACACCA+AGG | 0.666303 | 5_4:-9977929 | None:intergenic |
| TTCCTCCATTAAGAGCAATG+AGG | 0.669764 | 5_4:-9974003 | None:intergenic |
| AAGCCACCACATAAGTGTCA+CGG | 0.670111 | 5_4:-9977057 | None:intergenic |
| AACCACCCTTCTCTGTAGTG+AGG | 0.670296 | 5_4:-9978007 | None:intergenic |
| AGCACAATAATGGAGAGGAG+AGG | 0.671684 | 5_4:-9973700 | None:intergenic |
| GACCTCACTACAGAGAAGGG+TGG | 0.721164 | 5_4:+9978005 | Msa0836480:CDS |
| GGTGTTGGAAGAGCACACGG+TGG | 0.802780 | 5_4:+9977151 | Msa0836480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATACATATTCAAAATAT+GGG | - | chr5_4:9974774-9974793 | None:intergenic | 10.0% |
| !!! | TTTTATACATATTCAAAATA+TGG | - | chr5_4:9974775-9974794 | None:intergenic | 10.0% |
| !!! | TAATTTTCTATTATTTTTAG+AGG | - | chr5_4:9974844-9974863 | None:intergenic | 10.0% |
| !! | TAATTTCAATATACAAATAT+TGG | - | chr5_4:9975435-9975454 | None:intergenic | 10.0% |
| !!! | TTTTCTTTTACTTGTTAATT+AGG | - | chr5_4:9974135-9974154 | None:intergenic | 15.0% |
| !! | TTATACATATTCAAAATATG+GGG | - | chr5_4:9974773-9974792 | None:intergenic | 15.0% |
| !! | GATGAAATTTATTAATTCAA+TGG | - | chr5_4:9975111-9975130 | None:intergenic | 15.0% |
| !! | CTATTTATTAAATGAAAACT+AGG | + | chr5_4:9975261-9975280 | Msa0836480:intron | 15.0% |
| !! | AATAATTACATGTTTGAATT+TGG | + | chr5_4:9975603-9975622 | Msa0836480:intron | 15.0% |
| !!! | AAGTCAACATAATTAAATTT+TGG | - | chr5_4:9975661-9975680 | None:intergenic | 15.0% |
| !!! | TCTATATATAAGTTGATTTT+TGG | + | chr5_4:9975700-9975719 | Msa0836480:intron | 15.0% |
| !!! | CTATATATAAGTTGATTTTT+GGG | + | chr5_4:9975701-9975720 | Msa0836480:intron | 15.0% |
| !!! | TATATATAAGTTGATTTTTG+GGG | + | chr5_4:9975702-9975721 | Msa0836480:intron | 15.0% |
| !!! | TTGTTATTATAAACAAAAAC+AGG | + | chr5_4:9975964-9975983 | Msa0836480:intron | 15.0% |
| !!! | CATATTTGATAGTATATTTA+AGG | - | chr5_4:9976149-9976168 | None:intergenic | 15.0% |
| !!! | AACTTATTTGTTAAGTTTTT+TGG | + | chr5_4:9976187-9976206 | Msa0836480:intron | 15.0% |
| !!! | ACTTATTTGTTAAGTTTTTT+GGG | + | chr5_4:9976188-9976207 | Msa0836480:intron | 15.0% |
| !! | AAGAAAGAAAGAAAAAAAAT+AGG | - | chr5_4:9976266-9976285 | None:intergenic | 15.0% |
| !! | TAATGCAAAGTTTATAATTA+CGG | + | chr5_4:9977303-9977322 | Msa0836480:CDS | 15.0% |
| !! | AGTTGAATTAATATAATCTT+GGG | - | chr5_4:9978089-9978108 | None:intergenic | 15.0% |
| !! | TCAAAATTCAACAATATTAT+AGG | + | chr5_4:9978402-9978421 | Msa0836480:three_prime_UTR | 15.0% |
| !! | GCTAAAAAAGAACTATATAT+CGG | + | chr5_4:9973668-9973687 | Msa0836480:five_prime_UTR | 20.0% |
| !!! | TTATTCGTATTTTATTTTCC+CGG | + | chr5_4:9973816-9973835 | Msa0836480:CDS | 20.0% |
| !! | GAGAAAGTTAATTATAATCA+TGG | - | chr5_4:9974032-9974051 | None:intergenic | 20.0% |
| !! | ATTATAATTAACTTTCTCTC+AGG | + | chr5_4:9974034-9974053 | Msa0836480:CDS | 20.0% |
| !! | ACAAGTAAAAGAAAAAAAAG+TGG | + | chr5_4:9974140-9974159 | Msa0836480:intron | 20.0% |
| !! | TAGCTAAATGAATATTTGAT+GGG | + | chr5_4:9974173-9974192 | Msa0836480:intron | 20.0% |
| !! | TATAGTATATAAAATGTCTG+GGG | - | chr5_4:9974702-9974721 | None:intergenic | 20.0% |
| !! | GTATAGTATATAAAATGTCT+GGG | - | chr5_4:9974703-9974722 | None:intergenic | 20.0% |
| !! | TGTATAGTATATAAAATGTC+TGG | - | chr5_4:9974704-9974723 | None:intergenic | 20.0% |
| !! | AGAATTGAACTAATTTGAAT+CGG | - | chr5_4:9975034-9975053 | None:intergenic | 20.0% |
| !!! | TATTGATTCCATGATAAAAA+AGG | + | chr5_4:9975190-9975209 | Msa0836480:intron | 20.0% |
| !! | ATGTATAAGCAAAATAATCT+TGG | - | chr5_4:9975230-9975249 | None:intergenic | 20.0% |
| !!! | AATAGCTCTATTATTTGATT+AGG | - | chr5_4:9975352-9975371 | None:intergenic | 20.0% |
| !! | ACTTATAGTATAAAAGACTT+TGG | + | chr5_4:9975677-9975696 | Msa0836480:intron | 20.0% |
| !!! | TATTTTGATGATTTAGGATT+TGG | - | chr5_4:9976003-9976022 | None:intergenic | 20.0% |
| !! | AATATACTATCAAATATGAC+TGG | + | chr5_4:9976151-9976170 | Msa0836480:CDS | 20.0% |
| !!! | CTTATTTGTTAAGTTTTTTG+GGG | + | chr5_4:9976189-9976208 | Msa0836480:intron | 20.0% |
| !! | AAGAAAAAAAACTCATTTAG+TGG | + | chr5_4:9976395-9976414 | Msa0836480:intron | 20.0% |
| !! | GATATTATTGGACAAATTTA+AGG | + | chr5_4:9977033-9977052 | Msa0836480:CDS | 20.0% |
| !! | GTAATTATAAACTTTGCATT+AGG | - | chr5_4:9977304-9977323 | None:intergenic | 20.0% |
| !! | AATGCAAAGTTTATAATTAC+GGG | + | chr5_4:9977304-9977323 | Msa0836480:CDS | 20.0% |
| !! | ATATATGCAACAAAAAATGA+AGG | + | chr5_4:9977462-9977481 | Msa0836480:CDS | 20.0% |
| !! | ATCAAAGTTCAAATTTCAAT+CGG | - | chr5_4:9977711-9977730 | None:intergenic | 20.0% |
| !!! | TATATCCAGTATATTACTTT+TGG | - | chr5_4:9977807-9977826 | None:intergenic | 20.0% |
| !! | GTTGAATTAATATAATCTTG+GGG | - | chr5_4:9978088-9978107 | None:intergenic | 20.0% |
| !! | GAGTTGAATTAATATAATCT+TGG | - | chr5_4:9978090-9978109 | None:intergenic | 20.0% |
| !!! | AACGATTTATACTTTTTGAT+AGG | - | chr5_4:9978363-9978382 | None:intergenic | 20.0% |
| !!! | TATAGTTCTTTTTTAGCCTA+TGG | - | chr5_4:9973665-9973684 | None:intergenic | 25.0% |
| !!! | TATTCGTATTTTATTTTCCC+GGG | + | chr5_4:9973817-9973836 | Msa0836480:CDS | 25.0% |
| ! | CTAGCTAAATGAATATTTGA+TGG | + | chr5_4:9974172-9974191 | Msa0836480:intron | 25.0% |
| ! | TCACCACAAAAAAAAATATG+GGG | - | chr5_4:9974667-9974686 | None:intergenic | 25.0% |
| ! | GTCACCACAAAAAAAAATAT+GGG | - | chr5_4:9974668-9974687 | None:intergenic | 25.0% |
| ! | AGTCACCACAAAAAAAAATA+TGG | - | chr5_4:9974669-9974688 | None:intergenic | 25.0% |
| !!! | CACAAATACCTTTTTTATCA+TGG | - | chr5_4:9975201-9975220 | None:intergenic | 25.0% |
| !!! | ATAAAAAAGGTATTTGTGCA+TGG | + | chr5_4:9975203-9975222 | Msa0836480:intron | 25.0% |
| !!! | TTAGCATTCTAGAATTTTGT+TGG | + | chr5_4:9975493-9975512 | Msa0836480:intron | 25.0% |
| !!! | TAAAGAGCAACTTTTGTTTT+TGG | - | chr5_4:9975899-9975918 | None:intergenic | 25.0% |
| ! | ATAAACAAAAACAGGTCATT+TGG | + | chr5_4:9975972-9975991 | Msa0836480:intron | 25.0% |
| !!! | GACAAGTATTTTGATGATTT+AGG | - | chr5_4:9976009-9976028 | None:intergenic | 25.0% |
| ! | CTATGTTAATCTATCTATGA+TGG | + | chr5_4:9976092-9976111 | Msa0836480:CDS | 25.0% |
| !! | TTCTTCTTATATTTAAGACC+AGG | - | chr5_4:9976371-9976390 | None:intergenic | 25.0% |
| ! | GGTCTTAAATATAAGAAGAA+TGG | + | chr5_4:9976371-9976390 | Msa0836480:intron | 25.0% |
| !! | TAAAGTAGCTTTTTAGATAG+TGG | + | chr5_4:9976830-9976849 | Msa0836480:intron | 25.0% |
| ! | AAAGCAAGCAAAAATAAGTA+GGG | - | chr5_4:9976861-9976880 | None:intergenic | 25.0% |
| ! | AAAAGCAAGCAAAAATAAGT+AGG | - | chr5_4:9976862-9976881 | None:intergenic | 25.0% |
| ! | TTGAAGAATAGTTAACTGTA+TGG | + | chr5_4:9976941-9976960 | Msa0836480:intron | 25.0% |
| ! | TAATAACATAATAGGCTAGT+GGG | - | chr5_4:9977249-9977268 | None:intergenic | 25.0% |
| !! | ACTAGCCTATTATGTTATTA+GGG | + | chr5_4:9977249-9977268 | Msa0836480:CDS | 25.0% |
| ! | TATGTCCCTAATAACATAAT+AGG | - | chr5_4:9977257-9977276 | None:intergenic | 25.0% |
| ! | ATTAGGGACATATTAAGAAA+AGG | + | chr5_4:9977265-9977284 | Msa0836480:CDS | 25.0% |
| ! | TCATGTAAGAACATAATTGT+TGG | - | chr5_4:9977364-9977383 | None:intergenic | 25.0% |
| ! | AAAATCGTATAACCTATTGT+AGG | + | chr5_4:9977485-9977504 | Msa0836480:CDS | 25.0% |
| ! | TCAAATCAGATTAAGTCAAA+CGG | - | chr5_4:9977666-9977685 | None:intergenic | 25.0% |
| ! | TCAAAGTTCAAATTTCAATC+GGG | - | chr5_4:9977710-9977729 | None:intergenic | 25.0% |
| ! | TCATACCAAAAGTAATATAC+TGG | + | chr5_4:9977799-9977818 | Msa0836480:intron | 25.0% |
| ! | AGTATGGCATTAAATATCAT+GGG | - | chr5_4:9977947-9977966 | None:intergenic | 25.0% |
| ! | TATATTAATTCAACTCTCCT+TGG | + | chr5_4:9978094-9978113 | Msa0836480:CDS | 25.0% |
| !!! | TTCTTTGAAATGTCTTTCAA+TGG | - | chr5_4:9978122-9978141 | None:intergenic | 25.0% |
| ! | CTAAAATAACAACTTTGCAT+TGG | - | chr5_4:9978217-9978236 | None:intergenic | 25.0% |
| !!! | TTTTGAAGACTACAACTTTA+TGG | + | chr5_4:9978440-9978459 | Msa0836480:three_prime_UTR | 25.0% |
| ! | TGGAACTTACATTTCAAATT+TGG | + | chr5_4:9978460-9978479 | Msa0836480:three_prime_UTR | 25.0% |
| ! | TTAATAGCACAATAATGGAG+AGG | - | chr5_4:9973708-9973727 | None:intergenic | 30.0% |
| GGTAGTTAATAGCACAATAA+TGG | - | chr5_4:9973713-9973732 | None:intergenic | 30.0% | |
| CAATGAACAACAAGAATTTC+TGG | - | chr5_4:9973937-9973956 | None:intergenic | 30.0% | |
| ATTAACCTCATTGCTCTTAA+TGG | + | chr5_4:9973998-9974017 | Msa0836480:CDS | 30.0% | |
| !! | TATTTTCCTTAGTTCTTGAG+TGG | + | chr5_4:9974309-9974328 | Msa0836480:intron | 30.0% |
| ! | TATGGGGTCACTAATTTTAT+CGG | - | chr5_4:9974651-9974670 | None:intergenic | 30.0% |
| !!! | TGACCCCATATTTTTTTTTG+TGG | + | chr5_4:9974661-9974680 | Msa0836480:intron | 30.0% |
| CATTTCTTCATGAAAATAGC+TGG | + | chr5_4:9974950-9974969 | Msa0836480:intron | 30.0% | |
| !!! | TGCAAACTTTTGAAATGGAT+TGG | - | chr5_4:9975287-9975306 | None:intergenic | 30.0% |
| !! | AGCAATGCAAACTTTTGAAA+TGG | - | chr5_4:9975292-9975311 | None:intergenic | 30.0% |
| TTCAAAAGTTTGCATTGCTA+AGG | + | chr5_4:9975293-9975312 | Msa0836480:intron | 30.0% | |
| !! | GAAGACAAAATCGTTTTAGA+CGG | - | chr5_4:9975936-9975955 | None:intergenic | 30.0% |
| TCAAAATACTTGTCTTGCAT+TGG | + | chr5_4:9976015-9976034 | Msa0836480:CDS | 30.0% | |
| TACTATCAAATATGACTGGA+AGG | + | chr5_4:9976155-9976174 | Msa0836480:CDS | 30.0% | |
| CTTTCTTTCTTTCTTACAGA+TGG | + | chr5_4:9976275-9976294 | Msa0836480:intron | 30.0% | |
| GGATAGTATATAGATAGAGT+TGG | - | chr5_4:9976350-9976369 | None:intergenic | 30.0% | |
| ACTCTATCTATATACTATCC+TGG | + | chr5_4:9976350-9976369 | Msa0836480:intron | 30.0% | |
| !! | TAGCTTTTTAGATAGTGGTT+AGG | + | chr5_4:9976835-9976854 | Msa0836480:intron | 30.0% |
| CTTGATATTCTGCATATGTT+AGG | - | chr5_4:9976991-9977010 | None:intergenic | 30.0% | |
| AACCCAAGTCTTGATATTAT+TGG | + | chr5_4:9977021-9977040 | Msa0836480:CDS | 30.0% | |
| GTCCAATAATATCAAGACTT+GGG | - | chr5_4:9977026-9977045 | None:intergenic | 30.0% | |
| TGTCCAATAATATCAAGACT+TGG | - | chr5_4:9977027-9977046 | None:intergenic | 30.0% | |
| ATACCAAGAGATATCAAGAT+CGG | - | chr5_4:9977122-9977141 | None:intergenic | 30.0% | |
| ATCTTGATATCTCTTGGTAT+GGG | + | chr5_4:9977122-9977141 | Msa0836480:CDS | 30.0% | |
| ! | CAAATTCTTTTGTAGTCCTA+GGG | - | chr5_4:9977188-9977207 | None:intergenic | 30.0% |
| CTAGGACTACAAAAGAATTT+GGG | + | chr5_4:9977187-9977206 | Msa0836480:CDS | 30.0% | |
| TCATCTCTTTCAATCTCTTT+AGG | - | chr5_4:9977217-9977236 | None:intergenic | 30.0% | |
| AATAACATAATAGGCTAGTG+GGG | - | chr5_4:9977248-9977267 | None:intergenic | 30.0% | |
| CTAATAACATAATAGGCTAG+TGG | - | chr5_4:9977250-9977269 | None:intergenic | 30.0% | |
| ! | CACTAGCCTATTATGTTATT+AGG | + | chr5_4:9977248-9977267 | Msa0836480:CDS | 30.0% |
| TATAATTACGGGTCATAGTT+TGG | + | chr5_4:9977315-9977334 | Msa0836480:CDS | 30.0% | |
| ATAATTACGGGTCATAGTTT+GGG | + | chr5_4:9977316-9977335 | Msa0836480:CDS | 30.0% | |
| ! | ATGAGAAATTGTTGATTGAG+AGG | + | chr5_4:9977383-9977402 | Msa0836480:CDS | 30.0% |
| GCAATAAACAAACCTACAAT+AGG | - | chr5_4:9977500-9977519 | None:intergenic | 30.0% | |
| ATATGCTCTTCAAACACTTT+GGG | + | chr5_4:9977557-9977576 | Msa0836480:CDS | 30.0% | |
| ! | GTTTGACTTAATCTGATTTG+AGG | + | chr5_4:9977665-9977684 | Msa0836480:intron | 30.0% |
| CAAACATTATCTAGCTGAAA+GGG | - | chr5_4:9977756-9977775 | None:intergenic | 30.0% | |
| ACAAACATTATCTAGCTGAA+AGG | - | chr5_4:9977757-9977776 | None:intergenic | 30.0% | |
| TTCAGCTAGATAATGTTTGT+CGG | + | chr5_4:9977757-9977776 | Msa0836480:intron | 30.0% | |
| GGTGAAAAATAGTTCTTGTT+GGG | - | chr5_4:9977911-9977930 | None:intergenic | 30.0% | |
| AGGTGAAAAATAGTTCTTGT+TGG | - | chr5_4:9977912-9977931 | None:intergenic | 30.0% | |
| !! | ACAAGAACTATTTTTCACCT+TGG | + | chr5_4:9977912-9977931 | Msa0836480:CDS | 30.0% |
| CAGTATGGCATTAAATATCA+TGG | - | chr5_4:9977948-9977967 | None:intergenic | 30.0% | |
| CATGATATTTAATGCCATAC+TGG | + | chr5_4:9977946-9977965 | Msa0836480:CDS | 30.0% | |
| TTTACCATTGCCTATAGAAA+TGG | + | chr5_4:9977983-9978002 | Msa0836480:CDS | 30.0% | |
| !!! | GTTTCTCTTCTTTTTTAGGA+TGG | + | chr5_4:9978027-9978046 | Msa0836480:CDS | 30.0% |
| ! | TTTGAAACCTTCATTTCACT+TGG | - | chr5_4:9978387-9978406 | None:intergenic | 30.0% |
| !!! | AAAACATCGATTCACTTTTG+TGG | - | chr5_4:9978489-9978508 | None:intergenic | 30.0% |
| AAGACATGTGTTATGACTTA+TGG | - | chr5_4:9978552-9978571 | None:intergenic | 30.0% | |
| CTATTAACTACCTTAAGCCA+TGG | + | chr5_4:9973721-9973740 | Msa0836480:exon | 35.0% | |
| TCAAAGAAATGAGCATCTTC+TGG | - | chr5_4:9973794-9973813 | None:intergenic | 35.0% | |
| !!! | ATTTTATTTTCCCGGGACAT+AGG | + | chr5_4:9973824-9973843 | Msa0836480:CDS | 35.0% |
| !!! | TTTTATTTTCCCGGGACATA+GGG | + | chr5_4:9973825-9973844 | Msa0836480:CDS | 35.0% |
| TTTGTGGATAGTAATGCTGA+AGG | + | chr5_4:9973857-9973876 | Msa0836480:CDS | 35.0% | |
| ! | ACTTGCCAAGATTGGTTATT+GGG | + | chr5_4:9973964-9973983 | Msa0836480:CDS | 35.0% |
| ! | TTGAGTCTTTTACAAGTGTC+TGG | + | chr5_4:9974257-9974276 | Msa0836480:intron | 35.0% |
| ! | TCTTTTACAAGTGTCTGGTT+TGG | + | chr5_4:9974262-9974281 | Msa0836480:intron | 35.0% |
| AAGATCTGACCAATACACAT+GGG | - | chr5_4:9974344-9974363 | None:intergenic | 35.0% | |
| ! | TCACTAATTTTATCGGGACA+AGG | - | chr5_4:9974644-9974663 | None:intergenic | 35.0% |
| ! | ATGGGGTCACTAATTTTATC+GGG | - | chr5_4:9974650-9974669 | None:intergenic | 35.0% |
| ! | ATTTTTATTGTCGCATCGCA+TGG | - | chr5_4:9974888-9974907 | None:intergenic | 35.0% |
| ACGTAAACTTAAATGTGTGC+CGG | - | chr5_4:9975011-9975030 | None:intergenic | 35.0% | |
| ! | AAACAAGCTTTTGTGCATGA+TGG | - | chr5_4:9975085-9975104 | None:intergenic | 35.0% |
| CTTGTCTTGCATTGGAAATT+TGG | + | chr5_4:9976023-9976042 | Msa0836480:CDS | 35.0% | |
| TTTCTTACAGATGGAGTATG+TGG | + | chr5_4:9976284-9976303 | Msa0836480:intron | 35.0% | |
| TTCTTACAGATGGAGTATGT+GGG | + | chr5_4:9976285-9976304 | Msa0836480:intron | 35.0% | |
| ! | TAATATCAAGACTTGGGTTG+TGG | - | chr5_4:9977020-9977039 | None:intergenic | 35.0% |
| GATCTTGATATCTCTTGGTA+TGG | + | chr5_4:9977121-9977140 | Msa0836480:CDS | 35.0% | |
| ! | CCAAATTCTTTTGTAGTCCT+AGG | - | chr5_4:9977189-9977208 | None:intergenic | 35.0% |
| CCTAGGACTACAAAAGAATT+TGG | + | chr5_4:9977186-9977205 | Msa0836480:CDS | 35.0% | |
| GACTACAAAAGAATTTGGGT+TGG | + | chr5_4:9977191-9977210 | Msa0836480:CDS | 35.0% | |
| ! | GAAATTGTTGATTGAGAGGT+TGG | + | chr5_4:9977387-9977406 | Msa0836480:CDS | 35.0% |
| TTGGAAGGGATTTACACATT+TGG | + | chr5_4:9977406-9977425 | Msa0836480:CDS | 35.0% | |
| AGCATATCCTTATCATCGTA+GGG | - | chr5_4:9977544-9977563 | None:intergenic | 35.0% | |
| GATATGCTCTTCAAACACTT+TGG | + | chr5_4:9977556-9977575 | Msa0836480:CDS | 35.0% | |
| ! | GGATCTGCCTTTTCTTTAAT+AGG | + | chr5_4:9977578-9977597 | Msa0836480:CDS | 35.0% |
| CATAGCGCCTATTAAAGAAA+AGG | - | chr5_4:9977588-9977607 | None:intergenic | 35.0% | |
| ATCAGATTAAGTCAAACGGA+GGG | - | chr5_4:9977662-9977681 | None:intergenic | 35.0% | |
| AATCAGATTAAGTCAAACGG+AGG | - | chr5_4:9977663-9977682 | None:intergenic | 35.0% | |
| !!! | GGTGGTTTCTCTTCTTTTTT+AGG | + | chr5_4:9978023-9978042 | Msa0836480:CDS | 35.0% |
| !!! | CTCTTCTTTTTTAGGATGGT+TGG | + | chr5_4:9978031-9978050 | Msa0836480:CDS | 35.0% |
| !! | ATGGTTGGTTTACTAATTCC+AGG | + | chr5_4:9978046-9978065 | Msa0836480:CDS | 35.0% |
| AATGTCTTTCAATGGATCCA+AGG | - | chr5_4:9978114-9978133 | None:intergenic | 35.0% | |
| TGTTCTCTTCTCAAAGAGTT+AGG | + | chr5_4:9978276-9978295 | Msa0836480:three_prime_UTR | 35.0% | |
| !! | AAACGATGCTATAGTTCTAG+AGG | - | chr5_4:9978337-9978356 | None:intergenic | 35.0% |
| ATCGTTTCCAAGTGAAATGA+AGG | + | chr5_4:9978377-9978396 | Msa0836480:three_prime_UTR | 35.0% | |
| GAATGATTTAGGCTTATGAG+GGG | - | chr5_4:9978578-9978597 | None:intergenic | 35.0% | |
| GGAATGATTTAGGCTTATGA+GGG | - | chr5_4:9978579-9978598 | None:intergenic | 35.0% | |
| AGGAATGATTTAGGCTTATG+AGG | - | chr5_4:9978580-9978599 | None:intergenic | 35.0% | |
| ! | AATAATGGAGAGGAGAGGAA+AGG | - | chr5_4:9973698-9973717 | None:intergenic | 40.0% |
| ATGGCTTCTACTTGCGATAA+GGG | + | chr5_4:9973740-9973759 | Msa0836480:CDS | 40.0% | |
| CATAGGGCATAGGAAATTTG+TGG | + | chr5_4:9973841-9973860 | Msa0836480:CDS | 40.0% | |
| TAGTAATGCTGAAGGAGATG+TGG | + | chr5_4:9973865-9973884 | Msa0836480:CDS | 40.0% | |
| CAATAACCAATCTTGGCAAG+TGG | - | chr5_4:9973965-9973984 | None:intergenic | 40.0% | |
| ! | CACTTGCCAAGATTGGTTAT+TGG | + | chr5_4:9973963-9973982 | Msa0836480:CDS | 40.0% |
| CTCAACCCAATAACCAATCT+TGG | - | chr5_4:9973972-9973991 | None:intergenic | 40.0% | |
| AACCTCATTGCTCTTAATGG+AGG | + | chr5_4:9974001-9974020 | Msa0836480:CDS | 40.0% | |
| TTCCTCCATTAAGAGCAATG+AGG | - | chr5_4:9974006-9974025 | None:intergenic | 40.0% | |
| AAGACTCAAATTGCCTGCTT+GGG | - | chr5_4:9974246-9974265 | None:intergenic | 40.0% | |
| AAAGACTCAAATTGCCTGCT+TGG | - | chr5_4:9974247-9974266 | None:intergenic | 40.0% | |
| ACCAATACAAGCAACGAAAC+AGG | - | chr5_4:9974288-9974307 | None:intergenic | 40.0% | |
| CAAGATCTGACCAATACACA+TGG | - | chr5_4:9974345-9974364 | None:intergenic | 40.0% | |
| ATAGCTGGCAAAGTAGCATA+AGG | + | chr5_4:9974965-9974984 | Msa0836480:intron | 40.0% | |
| TAGCTGGCAAAGTAGCATAA+GGG | + | chr5_4:9974966-9974985 | Msa0836480:intron | 40.0% | |
| AAGTTTGCATTGCTAAGGTG+AGG | + | chr5_4:9975298-9975317 | Msa0836480:intron | 40.0% | |
| !!! | ATGTGGGATTTTTTGACTGC+TGG | + | chr5_4:9976301-9976320 | Msa0836480:CDS | 40.0% |
| !!! | GGATTTTTTGACTGCTGGAA+TGG | + | chr5_4:9976306-9976325 | Msa0836480:CDS | 40.0% |
| ! | ACTTATGTGGTGGCTTTTAG+AGG | + | chr5_4:9977064-9977083 | Msa0836480:CDS | 40.0% |
| ! | TTGTTGATTGAGAGGTTGGA+AGG | + | chr5_4:9977391-9977410 | Msa0836480:CDS | 40.0% |
| ! | TGTTGATTGAGAGGTTGGAA+GGG | + | chr5_4:9977392-9977411 | Msa0836480:CDS | 40.0% |
| ACATTTGGACAACCAAGAGT+TGG | + | chr5_4:9977421-9977440 | Msa0836480:CDS | 40.0% | |
| TATCTCTCATCTCCAACTCT+TGG | - | chr5_4:9977436-9977455 | None:intergenic | 40.0% | |
| ATTGCAATGACGTTGTTCCA+AGG | + | chr5_4:9977515-9977534 | Msa0836480:CDS | 40.0% | |
| GAGCATATCCTTATCATCGT+AGG | - | chr5_4:9977545-9977564 | None:intergenic | 40.0% | |
| TAATAGGCGCTATGAACTCA+AGG | + | chr5_4:9977594-9977613 | Msa0836480:CDS | 40.0% | |
| GTTCAAATTTCAATCGGGAG+AGG | - | chr5_4:9977705-9977724 | None:intergenic | 40.0% | |
| AGGGTTAGAATCTCATAACG+TGG | - | chr5_4:9977737-9977756 | None:intergenic | 40.0% | |
| ATCATGGGTATTACACACCA+AGG | - | chr5_4:9977932-9977951 | None:intergenic | 40.0% | |
| ATGCCATACTGGAACTCATA+AGG | + | chr5_4:9977957-9977976 | Msa0836480:CDS | 40.0% | |
| AGGTCCATTTCTATAGGCAA+TGG | - | chr5_4:9977990-9978009 | None:intergenic | 40.0% | |
| GTAGTGAGGTCCATTTCTAT+AGG | - | chr5_4:9977996-9978015 | None:intergenic | 40.0% | |
| TCTTCTCAAAGAGTTAGGCA+TGG | + | chr5_4:9978281-9978300 | Msa0836480:three_prime_UTR | 40.0% | |
| GTCAAGACACTCACAACCAT+AGG | + | chr5_4:9973646-9973665 | Msa0836480:five_prime_UTR | 45.0% | |
| ! | AGCACAATAATGGAGAGGAG+AGG | - | chr5_4:9973703-9973722 | None:intergenic | 45.0% |
| CAAGTAGAAGCCATGGCTTA+AGG | - | chr5_4:9973734-9973753 | None:intergenic | 45.0% | |
| CTTATCGCAAGTAGAAGCCA+TGG | - | chr5_4:9973741-9973760 | None:intergenic | 45.0% | |
| CATGGCTTCTACTTGCGATA+AGG | + | chr5_4:9973739-9973758 | Msa0836480:exon | 45.0% | |
| ATTTCCTATGCCCTATGTCC+CGG | - | chr5_4:9973838-9973857 | None:intergenic | 45.0% | |
| TAATGCTGAAGGAGATGTGG+AGG | + | chr5_4:9973868-9973887 | Msa0836480:CDS | 45.0% | |
| AATGCTGAAGGAGATGTGGA+GGG | + | chr5_4:9973869-9973888 | Msa0836480:CDS | 45.0% | |
| AGGGAAGTTTCAGAGGTAGA+TGG | + | chr5_4:9973888-9973907 | Msa0836480:CDS | 45.0% | |
| GCTAAACCACTTGCCAAGAT+TGG | + | chr5_4:9973956-9973975 | Msa0836480:CDS | 45.0% | |
| GCCTGTTTCGTTGCTTGTAT+TGG | + | chr5_4:9974284-9974303 | Msa0836480:intron | 45.0% | |
| GAAGAGCCACTCAAGAACTA+AGG | - | chr5_4:9974318-9974337 | None:intergenic | 45.0% | |
| CTCTTCTGACCCATGTGTAT+TGG | + | chr5_4:9974332-9974351 | Msa0836480:intron | 45.0% | |
| AGCTGGCAAAGTAGCATAAG+GGG | + | chr5_4:9974967-9974986 | Msa0836480:intron | 45.0% | |
| AAGGGGGTCTATATGCATCA+TGG | + | chr5_4:9974984-9975003 | Msa0836480:intron | 45.0% | |
| GGTCTATATGCATCATGGTC+CGG | + | chr5_4:9974989-9975008 | Msa0836480:intron | 45.0% | |
| TAAGGACCGTGACACTTATG+TGG | + | chr5_4:9977051-9977070 | Msa0836480:CDS | 45.0% | |
| AAGCCACCACATAAGTGTCA+CGG | - | chr5_4:9977060-9977079 | None:intergenic | 45.0% | |
| AACCCTTTGATGCAGATGCA+TGG | + | chr5_4:9977092-9977111 | Msa0836480:CDS | 45.0% | |
| CACCATGCATCTGCATCAAA+GGG | - | chr5_4:9977097-9977116 | None:intergenic | 45.0% | |
| ! | GCACCGATCTTGATATCTCT+TGG | + | chr5_4:9977116-9977135 | Msa0836480:CDS | 45.0% |
| ATCTCTTGGTATGGGATTCC+CGG | + | chr5_4:9977130-9977149 | Msa0836480:CDS | 45.0% | |
| ATTACGGGTCATAGTTTGGG+TGG | + | chr5_4:9977319-9977338 | Msa0836480:CDS | 45.0% | |
| TTATCATCGTAGGGCAACCT+TGG | - | chr5_4:9977535-9977554 | None:intergenic | 45.0% | |
| AAGGTTGCCCTACGATGATA+AGG | + | chr5_4:9977534-9977553 | Msa0836480:CDS | 45.0% | |
| GCTCCTTATGAGTTCCAGTA+TGG | - | chr5_4:9977963-9977982 | None:intergenic | 45.0% | |
| AATGGACCTCACTACAGAGA+AGG | + | chr5_4:9978001-9978020 | Msa0836480:CDS | 45.0% | |
| ATGGACCTCACTACAGAGAA+GGG | + | chr5_4:9978002-9978021 | Msa0836480:CDS | 45.0% | |
| ATTCCAGGATTACCTGCTCA+TGG | + | chr5_4:9978061-9978080 | Msa0836480:CDS | 45.0% | |
| TGATTTAGGCTTATGAGGGG+AGG | - | chr5_4:9978575-9978594 | None:intergenic | 45.0% | |
| !!! | AATTTTTCTTAATTTTTTAA+AGG | - | chr5_4:9975471-9975490 | None:intergenic | 5.0% |
| !!! | TTATAAAATAATTTTTAAGA+AGG | + | chr5_4:9975753-9975772 | Msa0836480:intron | 5.0% |
| !!! | TAAAAAATATTTTCATAAAA+AGG | - | chr5_4:9976565-9976584 | None:intergenic | 5.0% |
| TTTCCTATGCCCTATGTCCC+GGG | - | chr5_4:9973837-9973856 | None:intergenic | 50.0% | |
| GATGTGGAGGGAAGTTTCAG+AGG | + | chr5_4:9973881-9973900 | Msa0836480:CDS | 50.0% | |
| ATCAGATCTCAGTCCCAAGC+AGG | + | chr5_4:9974230-9974249 | Msa0836480:intron | 50.0% | |
| ACTCGTGAGCTTAGCTCAGT+TGG | - | chr5_4:9974736-9974755 | None:intergenic | 50.0% | |
| TGTCGCATCGCATGGACATA+GGG | - | chr5_4:9974880-9974899 | None:intergenic | 50.0% | |
| TTGTCGCATCGCATGGACAT+AGG | - | chr5_4:9974881-9974900 | None:intergenic | 50.0% | |
| GCTGGCAAAGTAGCATAAGG+GGG | + | chr5_4:9974968-9974987 | Msa0836480:intron | 50.0% | |
| CTTGACGCTTGAGAATGTCG+AGG | - | chr5_4:9976062-9976081 | None:intergenic | 50.0% | |
| GCACCATGCATCTGCATCAA+AGG | - | chr5_4:9977098-9977117 | None:intergenic | 50.0% | |
| ! | GGTGGATTCATGAAAGCCCT+AGG | + | chr5_4:9977169-9977188 | Msa0836480:CDS | 50.0% |
| TCAATCGGGAGAGGTCGTTT+CGG | - | chr5_4:9977696-9977715 | None:intergenic | 50.0% | |
| AACCACCCTTCTCTGTAGTG+AGG | - | chr5_4:9978010-9978029 | None:intergenic | 50.0% | |
| TAATCTTGGGGACCATGAGC+AGG | - | chr5_4:9978076-9978095 | None:intergenic | 50.0% | |
| TTTCCCGGGACATAGGGCAT+AGG | + | chr5_4:9973831-9973850 | Msa0836480:CDS | 55.0% | |
| AGCTAAGCTCACGAGTCACG+AGG | + | chr5_4:9974740-9974759 | Msa0836480:intron | 55.0% | |
| GGACCGTGACACTTATGTGG+TGG | + | chr5_4:9977054-9977073 | Msa0836480:CDS | 55.0% | |
| TGGTATGGGATTCCCGGTGT+TGG | + | chr5_4:9977136-9977155 | Msa0836480:CDS | 55.0% | |
| ACCGTGTGCTCTTCCAACAC+CGG | - | chr5_4:9977152-9977171 | None:intergenic | 55.0% | |
| GACCTCACTACAGAGAAGGG+TGG | + | chr5_4:9978005-9978024 | Msa0836480:CDS | 55.0% | |
| GGACCATGAGCAGGTAATCC+TGG | - | chr5_4:9978067-9978086 | None:intergenic | 55.0% | |
| CGCATCGCATGGACATAGGG+TGG | - | chr5_4:9974877-9974896 | None:intergenic | 60.0% | |
| CCGTGTGCTCTTCCAACACC+GGG | - | chr5_4:9977151-9977170 | None:intergenic | 60.0% | |
| ! | CCCGGTGTTGGAAGAGCACA+CGG | + | chr5_4:9977148-9977167 | Msa0836480:CDS | 60.0% |
| ! | GGTGTTGGAAGAGCACACGG+TGG | + | chr5_4:9977151-9977170 | Msa0836480:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 9973639 | 9978600 | 9973639 | ID=Msa0836480;Name=Msa0836480 |
| chr5_4 | mRNA | 9973639 | 9978600 | 9973639 | ID=Msa0836480-mRNA-1;Parent=Msa0836480;Name=Msa0836480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=101|1|1|1|1|1|5|453|469 |
| chr5_4 | exon | 9973639 | 9974055 | 9973639 | ID=Msa0836480-mRNA-1:exon:4413;Parent=Msa0836480-mRNA-1 |
| chr5_4 | exon | 9975986 | 9976176 | 9975986 | ID=Msa0836480-mRNA-1:exon:4414;Parent=Msa0836480-mRNA-1 |
| chr5_4 | exon | 9976294 | 9976327 | 9976294 | ID=Msa0836480-mRNA-1:exon:4415;Parent=Msa0836480-mRNA-1 |
| chr5_4 | exon | 9977002 | 9977615 | 9977002 | ID=Msa0836480-mRNA-1:exon:4416;Parent=Msa0836480-mRNA-1 |
| chr5_4 | exon | 9977893 | 9978600 | 9977893 | ID=Msa0836480-mRNA-1:exon:4417;Parent=Msa0836480-mRNA-1 |
| chr5_4 | five_prime_UTR | 9973639 | 9973739 | 9973639 | ID=Msa0836480-mRNA-1:five_prime_utr;Parent=Msa0836480-mRNA-1 |
| chr5_4 | CDS | 9973740 | 9974055 | 9973740 | ID=Msa0836480-mRNA-1:cds;Parent=Msa0836480-mRNA-1 |
| chr5_4 | CDS | 9975986 | 9976176 | 9975986 | ID=Msa0836480-mRNA-1:cds;Parent=Msa0836480-mRNA-1 |
| chr5_4 | CDS | 9976294 | 9976327 | 9976294 | ID=Msa0836480-mRNA-1:cds;Parent=Msa0836480-mRNA-1 |
| chr5_4 | CDS | 9977002 | 9977615 | 9977002 | ID=Msa0836480-mRNA-1:cds;Parent=Msa0836480-mRNA-1 |
| chr5_4 | CDS | 9977893 | 9978147 | 9977893 | ID=Msa0836480-mRNA-1:cds;Parent=Msa0836480-mRNA-1 |
| chr5_4 | three_prime_UTR | 9978148 | 9978600 | 9978148 | ID=Msa0836480-mRNA-1:three_prime_utr;Parent=Msa0836480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
