Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714910 | XP_003611733.1 | 97.441 | 469 | 12 | 0 | 1 | 469 | 1 | 469 | 0.0 | 952 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714910 | sp|F4JFU8|OBL1_ARATH | 38.922 | 501 | 264 | 7 | 2 | 460 | 8 | 508 | 1.06e-119 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714910 | G7K6N4 | 97.441 | 469 | 12 | 0 | 1 | 469 | 1 | 469 | 0.0 | 952 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714910 | Msa0756920 | 0.842057 | 3.261595e-58 | -8.615850e-47 |
| Msa0714910 | Msa0836480 | 0.825703 | 4.057484e-54 | -8.615850e-47 |
| Msa0343170 | Msa0714910 | 0.810284 | 1.244199e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714910 | MtrunA17_Chr5g0402171 | 97.441 | 469 | 12 | 0 | 1 | 469 | 1 | 469 | 0.0 | 952 |
| Msa0714910 | MtrunA17_Chr1g0153271 | 48.465 | 456 | 232 | 3 | 13 | 467 | 11 | 464 | 2.66e-159 | 459 |
| Msa0714910 | MtrunA17_Chr7g0276561 | 39.959 | 483 | 255 | 6 | 13 | 460 | 8 | 490 | 1.20e-121 | 364 |
| Msa0714910 | MtrunA17_Chr3g0123741 | 53.710 | 283 | 110 | 2 | 181 | 462 | 37 | 299 | 4.32e-105 | 315 |
| Msa0714910 | MtrunA17_Chr3g0123751 | 41.964 | 112 | 52 | 3 | 73 | 171 | 30 | 141 | 1.48e-16 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714910 | AT5G42930.1 | 51.204 | 457 | 216 | 4 | 12 | 462 | 6 | 461 | 2.72e-169 | 485 |
| Msa0714910 | AT1G56630.1 | 49.145 | 468 | 218 | 6 | 12 | 461 | 6 | 471 | 4.74e-158 | 457 |
| Msa0714910 | AT5G67050.1 | 47.863 | 468 | 229 | 7 | 1 | 459 | 1 | 462 | 2.47e-157 | 455 |
| Msa0714910 | AT5G42930.2 | 48.819 | 381 | 188 | 4 | 12 | 386 | 6 | 385 | 1.27e-133 | 392 |
| Msa0714910 | AT1G45201.1 | 44.635 | 466 | 251 | 5 | 3 | 464 | 2 | 464 | 2.40e-131 | 389 |
| Msa0714910 | AT1G45201.3 | 44.635 | 466 | 251 | 5 | 3 | 464 | 27 | 489 | 4.01e-131 | 389 |
| Msa0714910 | AT3G14360.1 | 38.922 | 501 | 264 | 7 | 2 | 460 | 8 | 508 | 1.08e-120 | 363 |
| Msa0714910 | AT1G45201.2 | 45.501 | 389 | 203 | 6 | 3 | 386 | 2 | 386 | 3.51e-106 | 321 |
Find 135 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAGGACTACAAAAGAATT+TGG | 0.104854 | 5_1:+7745444 | Msa0714910:CDS |
| CATATTTGATAGTATATTTA+AGG | 0.110916 | 5_1:-7744408 | None:intergenic |
| GATATTATTGGACAAATTTA+AGG | 0.140061 | 5_1:+7745291 | Msa0714910:CDS |
| CTTGTCTTGCATTGGAAATT+TGG | 0.140513 | 5_1:+7744285 | Msa0714910:CDS |
| TGGAACTTACATTTCAAATT+TGG | 0.161115 | 5_1:+7746724 | Msa0714910:three_prime_UTR |
| CACTAGCCTATTATGTTATT+AGG | 0.177714 | 5_1:+7745506 | Msa0714910:CDS |
| ATTAACCTCATTGCTCTTAA+TGG | 0.184975 | 5_1:+7742206 | Msa0714910:CDS |
| CAATGAACAACAAGAATTTC+TGG | 0.201915 | 5_1:-7742142 | None:intergenic |
| AACCCAAGTCTTGATATTAT+TGG | 0.213124 | 5_1:+7745279 | Msa0714910:CDS |
| TCAAACTTCAACAATATTAT+AGG | 0.226510 | 5_1:+7746666 | Msa0714910:three_prime_UTR |
| GTAATTATAAACTTTGCATT+AGG | 0.258312 | 5_1:-7745559 | None:intergenic |
| CACTTGCCAAGATTGGTTAT+TGG | 0.262528 | 5_1:+7742171 | Msa0714910:CDS |
| TATAATTACGGGTCATAGTT+TGG | 0.267812 | 5_1:+7745573 | Msa0714910:CDS |
| TCATCTCTTTCAATCTCTTT+AGG | 0.270056 | 5_1:-7745472 | None:intergenic |
| TCAAAGAAATGGGCATCTTC+TGG | 0.280117 | 5_1:-7741999 | None:intergenic |
| TAATTATAAACTTTGCATTA+GGG | 0.295298 | 5_1:-7745558 | None:intergenic |
| GAGCATATCCTTATCATCAT+AGG | 0.306608 | 5_1:-7745800 | None:intergenic |
| TAATGCAAAGTTTATAATTA+CGG | 0.312362 | 5_1:+7745561 | Msa0714910:CDS |
| TACGAATAATATCAAAGAAA+TGG | 0.318968 | 5_1:-7742010 | None:intergenic |
| TATATCCCTAATAACATAAT+AGG | 0.319538 | 5_1:-7745512 | None:intergenic |
| ACTTGCCAAGATTGGTTATT+GGG | 0.319969 | 5_1:+7742172 | Msa0714910:CDS |
| ACTAGCCTATTATGTTATTA+GGG | 0.324766 | 5_1:+7745507 | Msa0714910:CDS |
| ATGGTTGGTTTACTAATTCC+AGG | 0.346840 | 5_1:+7746314 | Msa0714910:CDS |
| ATCTCTTGGTATGGGATTCC+CGG | 0.349498 | 5_1:+7745388 | Msa0714910:CDS |
| TGTTCTCTTCTCAAAGAGTT+AGG | 0.352505 | 5_1:+7746546 | Msa0714910:three_prime_UTR |
| GGTAGTTAATAGCACAATAA+TGG | 0.353481 | 5_1:-7741918 | None:intergenic |
| AATGCAAAGTTTATAATTAC+GGG | 0.356213 | 5_1:+7745562 | Msa0714910:CDS |
| TTCTTTGAAATGTCTTTCAA+TGG | 0.359014 | 5_1:-7746387 | None:intergenic |
| TTAGGACTACAAAAGAATTT+GGG | 0.367568 | 5_1:+7745445 | Msa0714910:CDS |
| AAGACATGTGTTATGACTTA+TGG | 0.368603 | 5_1:-7746813 | None:intergenic |
| GCTAAACCACTTGCCAAGAT+TGG | 0.383519 | 5_1:+7742164 | Msa0714910:CDS |
| ATAATTACGGGTCATAGTTT+GGG | 0.384486 | 5_1:+7745574 | Msa0714910:CDS |
| AGTTGAATTAATATAATCTT+GGG | 0.390448 | 5_1:-7746354 | None:intergenic |
| ATATGCTCTTCAAACACTTT+GGG | 0.390714 | 5_1:+7745815 | Msa0714910:CDS |
| TTTACCATTGCCTATAGAAA+TGG | 0.395799 | 5_1:+7746251 | Msa0714910:CDS |
| CATGATATTTAATGCCATAC+TGG | 0.399831 | 5_1:+7746214 | Msa0714910:CDS |
| TCAAAATACTTGTCTTGCAT+TGG | 0.400909 | 5_1:+7744277 | Msa0714910:CDS |
| CAGTATGGCATTAAATATCA+TGG | 0.402639 | 5_1:-7746213 | None:intergenic |
| ATCGTTTCTAAGTGAAATGA+AGG | 0.403936 | 5_1:+7746641 | Msa0714910:three_prime_UTR |
| TATATTAATTCAACTCTCCT+TGG | 0.404606 | 5_1:+7746362 | Msa0714910:CDS |
| ATGGCTTCTACTTGCGATAA+GGG | 0.405244 | 5_1:+7741948 | Msa0714910:CDS |
| TATAGTTCTTTCTTAGCCTA+TGG | 0.406758 | 5_1:-7741865 | None:intergenic |
| GATATGCTCTTCAAACACTT+TGG | 0.411572 | 5_1:+7745814 | Msa0714910:CDS |
| TTGGAAGGGATTTACACATT+TGG | 0.413556 | 5_1:+7745664 | Msa0714910:CDS |
| CATGGCTTCTACTTGCGATA+AGG | 0.417574 | 5_1:+7741947 | Msa0714910:exon |
| GAGTTGAATTAATATAATCT+TGG | 0.418572 | 5_1:-7746355 | None:intergenic |
| ATTATAATTAACTTTCTCTC+AGG | 0.423060 | 5_1:+7742242 | Msa0714910:CDS |
| TCATGTAAGAACATAATTGT+TGG | 0.426080 | 5_1:-7745619 | None:intergenic |
| ACGAATAATATCAAAGAAAT+GGG | 0.427070 | 5_1:-7742009 | None:intergenic |
| GATCTAGATATCTCTTGGTA+TGG | 0.432966 | 5_1:+7745379 | Msa0714910:CDS |
| GCTCCTTATGAGTTCCAGTA+TGG | 0.438651 | 5_1:-7746228 | None:intergenic |
| GAAATTGTTGATTGAGAGGT+TGG | 0.442736 | 5_1:+7745645 | Msa0714910:CDS |
| AAAATCGTATAACATATTGT+AGG | 0.445654 | 5_1:+7745743 | Msa0714910:CDS |
| CTCAACCCAATAACCAATCT+TGG | 0.446288 | 5_1:-7742177 | None:intergenic |
| ATTTCCTATGCCCTATGTCC+CGG | 0.451521 | 5_1:-7742043 | None:intergenic |
| ATTAGGGATATACTAAGAAA+AGG | 0.454297 | 5_1:+7745523 | Msa0714910:CDS |
| CTAAAATAACAACTTTGCAT+TGG | 0.458839 | 5_1:-7746482 | None:intergenic |
| TTTCTTACAGATGGAGTATG+TGG | 0.459644 | 5_1:+7744542 | Msa0714910:intron |
| TATCTCTCATCTCCAACTCT+TGG | 0.464603 | 5_1:-7745691 | None:intergenic |
| TTGTTGATTGAGAGGTTGGA+AGG | 0.470831 | 5_1:+7745649 | Msa0714910:CDS |
| AAGGTTGCCCTATGATGATA+AGG | 0.473938 | 5_1:+7745792 | Msa0714910:CDS |
| GGACCATGAGCAGGTAATCC+TGG | 0.476008 | 5_1:-7746332 | None:intergenic |
| GCACCATGCATCTGCATCAA+AGG | 0.477633 | 5_1:-7745353 | None:intergenic |
| GTAGTGAGGTCCATTTCTAT+AGG | 0.479877 | 5_1:-7746261 | None:intergenic |
| ATGCCATACTGGAACTCATA+AGG | 0.484427 | 5_1:+7746225 | Msa0714910:CDS |
| CATAGCGCCTATTAAAGAAA+AGG | 0.484819 | 5_1:-7745843 | None:intergenic |
| CTATGTTAATCTATCTATGA+TGG | 0.490863 | 5_1:+7744354 | Msa0714910:CDS |
| AGGGAAGTTTCAGAGGTAGA+TGG | 0.492187 | 5_1:+7742096 | Msa0714910:CDS |
| GTCCAATAATATCAAGACTT+GGG | 0.497259 | 5_1:-7745281 | None:intergenic |
| ATGGGATTCCCGGTGTAGGA+AGG | 0.500067 | 5_1:+7745398 | Msa0714910:CDS |
| TGTCCAATAATATCAAGACT+TGG | 0.500256 | 5_1:-7745282 | None:intergenic |
| GAGAAAGTTAATTATAATCA+TGG | 0.501031 | 5_1:-7742237 | None:intergenic |
| TTATCATCATAGGGCAACCT+TGG | 0.501451 | 5_1:-7745790 | None:intergenic |
| GATGTGGAGGGAAGTTTCAG+AGG | 0.504440 | 5_1:+7742089 | Msa0714910:CDS |
| CATAGGGCATAGGAAATTTG+TGG | 0.508090 | 5_1:+7742049 | Msa0714910:CDS |
| ACATTTGGACAACCAAGAGT+TGG | 0.512602 | 5_1:+7745679 | Msa0714910:CDS |
| AATATACTATCAAATATGAC+TGG | 0.515887 | 5_1:+7744413 | Msa0714910:CDS |
| GCACCGATCTAGATATCTCT+TGG | 0.517257 | 5_1:+7745374 | Msa0714910:CDS |
| CAAGTAGAAGCCATGGCTAA+AGG | 0.519574 | 5_1:-7741939 | None:intergenic |
| TGGAGAGGAGAGGAGAGGAA+AGG | 0.522164 | 5_1:-7741898 | None:intergenic |
| CACCATGCATCTGCATCAAA+GGG | 0.523948 | 5_1:-7745352 | None:intergenic |
| GGTGGATTCATGAAAGCCTT+AGG | 0.523970 | 5_1:+7745427 | Msa0714910:CDS |
| TAATAACATAATAGGCTAGT+GGG | 0.524972 | 5_1:-7745504 | None:intergenic |
| TAATATCAAGACTTGGGTTG+TGG | 0.526921 | 5_1:-7745275 | None:intergenic |
| TGTTGATTGAGAGGTTGGAA+GGG | 0.531128 | 5_1:+7745650 | Msa0714910:CDS |
| TAATCTTGGGGACCATGAGC+AGG | 0.531416 | 5_1:-7746341 | None:intergenic |
| TTTCCTATGCCCTATGTCCC+GGG | 0.534655 | 5_1:-7742042 | None:intergenic |
| CTATTAACTACCTTTAGCCA+TGG | 0.534703 | 5_1:+7741929 | Msa0714910:exon |
| TTCTTACAGATGGAGTATGT+GGG | 0.535001 | 5_1:+7744543 | Msa0714910:intron |
| ATCTAGATATCTCTTGGTAT+GGG | 0.536390 | 5_1:+7745380 | Msa0714910:CDS |
| AGCATATCCTTATCATCATA+GGG | 0.543254 | 5_1:-7745799 | None:intergenic |
| ACCGTGTGCCCTTCCTACAC+CGG | 0.544208 | 5_1:-7745407 | None:intergenic |
| GACTACAAAAGAATTTGGGT+TGG | 0.547722 | 5_1:+7745449 | Msa0714910:CDS |
| TAAGGACCGTGACACTTATG+TGG | 0.548736 | 5_1:+7745309 | Msa0714910:CDS |
| CCGTGTGCCCTTCCTACACC+GGG | 0.562416 | 5_1:-7745406 | None:intergenic |
| TGGGATTCCCGGTGTAGGAA+GGG | 0.568692 | 5_1:+7745399 | Msa0714910:CDS |
| TACTATCAAATATGACTGGA+AGG | 0.569156 | 5_1:+7744417 | Msa0714910:CDS |
| ATGAGAAATTGTTGATTGAG+AGG | 0.569804 | 5_1:+7745641 | Msa0714910:CDS |
| AATGTCTTTCAATGGATCCA+AGG | 0.570092 | 5_1:-7746379 | None:intergenic |
| CTTGACGCTTGAGAATGTCG+AGG | 0.572164 | 5_1:-7744321 | None:intergenic |
| TGGTATGGGATTCCCGGTGT+AGG | 0.574008 | 5_1:+7745394 | Msa0714910:CDS |
| TAATGCTGAAGGAGATGTGG+AGG | 0.574281 | 5_1:+7742076 | Msa0714910:CDS |
| AACCTCATTGCTCTTAATGG+AGG | 0.577915 | 5_1:+7742209 | Msa0714910:CDS |
| AGTATGGCATTAAATATCAT+GGG | 0.582068 | 5_1:-7746212 | None:intergenic |
| TCTTCTCAAAGAGTTAGGCA+TGG | 0.589207 | 5_1:+7746551 | Msa0714910:three_prime_UTR |
| CAATAACCAATCTTGGCAAG+TGG | 0.589271 | 5_1:-7742170 | None:intergenic |
| TAATAGGCGCTATGAACTCA+AGG | 0.589923 | 5_1:+7745852 | Msa0714910:CDS |
| CTAATAACATAATAGGCTAG+TGG | 0.592254 | 5_1:-7745505 | None:intergenic |
| TTTCCCGGGACATAGGGCAT+AGG | 0.592932 | 5_1:+7742039 | Msa0714910:CDS |
| ATTCCAGGATTACCTGCTCA+TGG | 0.596826 | 5_1:+7746329 | Msa0714910:CDS |
| AGGTCCATTTCTATAGGCAA+TGG | 0.597360 | 5_1:-7746255 | None:intergenic |
| ATTACGGGTCATAGTTTGGG+TGG | 0.597647 | 5_1:+7745577 | Msa0714910:CDS |
| AAACGATGCTATAGTTCTAG+AGG | 0.601264 | 5_1:-7746598 | None:intergenic |
| ATTGCAATGACATTGTTCCA+AGG | 0.603996 | 5_1:+7745773 | Msa0714910:CDS |
| CCCGGTGTAGGAAGGGCACA+CGG | 0.605220 | 5_1:+7745406 | Msa0714910:CDS |
| ATACCAAGAGATATCTAGAT+CGG | 0.609373 | 5_1:-7745377 | None:intergenic |
| AATGCTGAAGGAGATGTGGA+GGG | 0.614108 | 5_1:+7742077 | Msa0714910:CDS |
| CTTATCGCAAGTAGAAGCCA+TGG | 0.616120 | 5_1:-7741946 | None:intergenic |
| GTCAAGACACTCACAACCAT+AGG | 0.616784 | 5_1:+7741849 | Msa0714910:five_prime_UTR |
| AATGGACCTCACTACAGAGA+AGG | 0.617802 | 5_1:+7746269 | Msa0714910:CDS |
| TAGTAATGCTGAAGGAGATG+TGG | 0.621964 | 5_1:+7742073 | Msa0714910:CDS |
| TTTGTGGATAGTAATGCTGA+AGG | 0.630116 | 5_1:+7742065 | Msa0714910:CDS |
| AACCCTTTGATGCAGATGCA+TGG | 0.632417 | 5_1:+7745350 | Msa0714910:CDS |
| AACCATCCTTCTCTGTAGTG+AGG | 0.643022 | 5_1:-7746275 | None:intergenic |
| GTTGAATTAATATAATCTTG+GGG | 0.644078 | 5_1:-7746353 | None:intergenic |
| AATAACATAATAGGCTAGTG+GGG | 0.646861 | 5_1:-7745503 | None:intergenic |
| GGACCGTGACACTTATGTGG+TGG | 0.649989 | 5_1:+7745312 | Msa0714910:CDS |
| TTAATAGCACAATAATGGAG+AGG | 0.659188 | 5_1:-7741913 | None:intergenic |
| TTCCTCCATTAAGAGCAATG+AGG | 0.669764 | 5_1:-7742211 | None:intergenic |
| AAGCCACCACATAAGTGTCA+CGG | 0.670111 | 5_1:-7745315 | None:intergenic |
| GACCTCACTACAGAGAAGGA+TGG | 0.672435 | 5_1:+7746273 | Msa0714910:CDS |
| AGCACAATAATGGAGAGGAG+AGG | 0.673829 | 5_1:-7741908 | None:intergenic |
| ATCATGGGTATCACACACCA+AGG | 0.676834 | 5_1:-7746197 | None:intergenic |
| AATAATGGAGAGGAGAGGAG+AGG | 0.689518 | 5_1:-7741903 | None:intergenic |
| GGTGTAGGAAGGGCACACGG+TGG | 0.752755 | 5_1:+7745409 | Msa0714910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTCTATTATTTTTAG+AGG | - | chr5_1:7742957-7742976 | None:intergenic | 10.0% |
| !! | TAATTTCAATATACAAATAT+TGG | - | chr5_1:7743698-7743717 | None:intergenic | 10.0% |
| !!! | TATATCTATTATATTACTTT+TGG | - | chr5_1:7746070-7746089 | None:intergenic | 10.0% |
| !!! | TTTTCTTTTACTTGTTAATT+AGG | - | chr5_1:7742345-7742364 | None:intergenic | 15.0% |
| !! | TTTATACAGATTCAAAATAT+GGG | - | chr5_1:7742887-7742906 | None:intergenic | 15.0% |
| !!! | TTTTATACAGATTCAAAATA+TGG | - | chr5_1:7742888-7742907 | None:intergenic | 15.0% |
| !! | GATGAAATTTATTAATTCAA+TGG | - | chr5_1:7743224-7743243 | None:intergenic | 15.0% |
| !! | CTATTTATTAAATGAAAACT+AGG | + | chr5_1:7743524-7743543 | Msa0714910:intron | 15.0% |
| !! | AATAATTACATGTTTGAATT+TGG | + | chr5_1:7743866-7743885 | Msa0714910:intron | 15.0% |
| !!! | AAGTCAACATAATTAAATTT+TGG | - | chr5_1:7743924-7743943 | None:intergenic | 15.0% |
| !!! | TCTATATATAAGTTGATTTT+TGG | + | chr5_1:7743963-7743982 | Msa0714910:intron | 15.0% |
| !!! | CTATATATAAGTTGATTTTT+GGG | + | chr5_1:7743964-7743983 | Msa0714910:intron | 15.0% |
| !!! | TATATATAAGTTGATTTTTG+GGG | + | chr5_1:7743965-7743984 | Msa0714910:intron | 15.0% |
| !!! | TTGTTATTATAAACAAAAAC+AGG | + | chr5_1:7744226-7744245 | Msa0714910:intron | 15.0% |
| !!! | CATATTTGATAGTATATTTA+AGG | - | chr5_1:7744411-7744430 | None:intergenic | 15.0% |
| !!! | AACTTATTTGTTAAGTTTTT+TGG | + | chr5_1:7744449-7744468 | Msa0714910:intron | 15.0% |
| !!! | ACTTATTTGTTAAGTTTTTT+GGG | + | chr5_1:7744450-7744469 | Msa0714910:intron | 15.0% |
| !! | AAGAAAGAAAGAAAAAAAAT+AGG | - | chr5_1:7744528-7744547 | None:intergenic | 15.0% |
| !! | TAATTATAAACTTTGCATTA+GGG | - | chr5_1:7745561-7745580 | None:intergenic | 15.0% |
| !! | TAATGCAAAGTTTATAATTA+CGG | + | chr5_1:7745561-7745580 | Msa0714910:CDS | 15.0% |
| !! | AGTTGAATTAATATAATCTT+GGG | - | chr5_1:7746357-7746376 | None:intergenic | 15.0% |
| !! | ACGAATAATATCAAAGAAAT+GGG | - | chr5_1:7742012-7742031 | None:intergenic | 20.0% |
| !! | TACGAATAATATCAAAGAAA+TGG | - | chr5_1:7742013-7742032 | None:intergenic | 20.0% |
| !!! | TTATTCGTATTTTATTTTCC+CGG | + | chr5_1:7742024-7742043 | Msa0714910:CDS | 20.0% |
| !! | GAGAAAGTTAATTATAATCA+TGG | - | chr5_1:7742240-7742259 | None:intergenic | 20.0% |
| !! | ATTATAATTAACTTTCTCTC+AGG | + | chr5_1:7742242-7742261 | Msa0714910:CDS | 20.0% |
| !! | ACAAGTAAAAGAAAAAAAAG+TGG | + | chr5_1:7742350-7742369 | Msa0714910:intron | 20.0% |
| !! | TTATACAGATTCAAAATATG+GGG | - | chr5_1:7742886-7742905 | None:intergenic | 20.0% |
| !! | AGAATTGAACTAATTTGAAT+CGG | - | chr5_1:7743147-7743166 | None:intergenic | 20.0% |
| !! | ATTAAGTCCATGATAAAAAA+AGG | + | chr5_1:7743304-7743323 | Msa0714910:intron | 20.0% |
| !!! | ACAAATACCTTTTTTTATCA+TGG | - | chr5_1:7743314-7743333 | None:intergenic | 20.0% |
| !!! | AATAGCTCTATTATTTGATT+AGG | - | chr5_1:7743615-7743634 | None:intergenic | 20.0% |
| !! | ACTTATAGTATAAAAGACTT+TGG | + | chr5_1:7743940-7743959 | Msa0714910:intron | 20.0% |
| !!! | TATTTTGATGATTTAGGATT+TGG | - | chr5_1:7744265-7744284 | None:intergenic | 20.0% |
| !! | AATATACTATCAAATATGAC+TGG | + | chr5_1:7744413-7744432 | Msa0714910:CDS | 20.0% |
| !!! | CTTATTTGTTAAGTTTTTTG+GGG | + | chr5_1:7744451-7744470 | Msa0714910:intron | 20.0% |
| !! | AGAAAAAAAAACTCATTTAG+TGG | + | chr5_1:7744654-7744673 | Msa0714910:intron | 20.0% |
| !! | GATATTATTGGACAAATTTA+AGG | + | chr5_1:7745291-7745310 | Msa0714910:CDS | 20.0% |
| !! | TATATCCCTAATAACATAAT+AGG | - | chr5_1:7745515-7745534 | None:intergenic | 20.0% |
| !! | GTAATTATAAACTTTGCATT+AGG | - | chr5_1:7745562-7745581 | None:intergenic | 20.0% |
| !! | AATGCAAAGTTTATAATTAC+GGG | + | chr5_1:7745562-7745581 | Msa0714910:CDS | 20.0% |
| !! | ATATATGCAACAAAAAATGA+AGG | + | chr5_1:7745720-7745739 | Msa0714910:CDS | 20.0% |
| !! | AAAATCGTATAACATATTGT+AGG | + | chr5_1:7745743-7745762 | Msa0714910:CDS | 20.0% |
| !!! | TCATTATTTAATTTCAATGC+AGG | + | chr5_1:7746139-7746158 | Msa0714910:intron | 20.0% |
| !! | GTTGAATTAATATAATCTTG+GGG | - | chr5_1:7746356-7746375 | None:intergenic | 20.0% |
| !! | GAGTTGAATTAATATAATCT+TGG | - | chr5_1:7746358-7746377 | None:intergenic | 20.0% |
| !!! | AACGATTTATACTTTTTGAT+AGG | - | chr5_1:7746627-7746646 | None:intergenic | 20.0% |
| !! | TCAAACTTCAACAATATTAT+AGG | + | chr5_1:7746666-7746685 | Msa0714910:three_prime_UTR | 20.0% |
| !!! | TATTCGTATTTTATTTTCCC+GGG | + | chr5_1:7742025-7742044 | Msa0714910:CDS | 25.0% |
| ! | CAGCTAAATGAATATTTGAT+GGG | + | chr5_1:7742383-7742402 | Msa0714910:intron | 25.0% |
| ! | TCACCACAAAAAAAAATATG+GGG | - | chr5_1:7742780-7742799 | None:intergenic | 25.0% |
| ! | GTCACCACAAAAAAAAATAT+GGG | - | chr5_1:7742781-7742800 | None:intergenic | 25.0% |
| ! | TATAGTATATGAAATGTCTG+GGG | - | chr5_1:7742815-7742834 | None:intergenic | 25.0% |
| ! | GTATAGTATATGAAATGTCT+GGG | - | chr5_1:7742816-7742835 | None:intergenic | 25.0% |
| ! | TGTATAGTATATGAAATGTC+TGG | - | chr5_1:7742817-7742836 | None:intergenic | 25.0% |
| !!! | TAAAAAAAGGTATTTGTGCA+TGG | + | chr5_1:7743317-7743336 | Msa0714910:intron | 25.0% |
| ! | GTGTATAAGCAAAATAATCT+TGG | - | chr5_1:7743344-7743363 | None:intergenic | 25.0% |
| !!! | TTAGCATTCTAGAATTTTGT+TGG | + | chr5_1:7743756-7743775 | Msa0714910:intron | 25.0% |
| !!! | TAAAGAGCAACTTTTGTTTT+TGG | - | chr5_1:7744161-7744180 | None:intergenic | 25.0% |
| ! | ATAAACAAAAACAGGTCATT+TGG | + | chr5_1:7744234-7744253 | Msa0714910:intron | 25.0% |
| !!! | GACAAGTATTTTGATGATTT+AGG | - | chr5_1:7744271-7744290 | None:intergenic | 25.0% |
| ! | CTATGTTAATCTATCTATGA+TGG | + | chr5_1:7744354-7744373 | Msa0714910:CDS | 25.0% |
| !! | TTTTCTTTCTTTCTTACAGA+TGG | + | chr5_1:7744533-7744552 | Msa0714910:intron | 25.0% |
| !! | TTCTTCTTATATTTAAGACC+AGG | - | chr5_1:7744629-7744648 | None:intergenic | 25.0% |
| ! | GGTCTTAAATATAAGAAGAA+TGG | + | chr5_1:7744629-7744648 | Msa0714910:intron | 25.0% |
| !! | TAAAGTAGCTTTTTAGATAG+TGG | + | chr5_1:7745088-7745107 | Msa0714910:intron | 25.0% |
| ! | AAAGCAAGCAAAAATAAGTA+GGG | - | chr5_1:7745119-7745138 | None:intergenic | 25.0% |
| ! | AAAAGCAAGCAAAAATAAGT+AGG | - | chr5_1:7745120-7745139 | None:intergenic | 25.0% |
| ! | TTGAAGAATAGTTAACTGTA+TGG | + | chr5_1:7745199-7745218 | Msa0714910:intron | 25.0% |
| ! | TTAGGACTACAAAAGAATTT+GGG | + | chr5_1:7745445-7745464 | Msa0714910:CDS | 25.0% |
| ! | TAATAACATAATAGGCTAGT+GGG | - | chr5_1:7745507-7745526 | None:intergenic | 25.0% |
| !! | ACTAGCCTATTATGTTATTA+GGG | + | chr5_1:7745507-7745526 | Msa0714910:CDS | 25.0% |
| ! | ATTAGGGATATACTAAGAAA+AGG | + | chr5_1:7745523-7745542 | Msa0714910:CDS | 25.0% |
| ! | TCATGTAAGAACATAATTGT+TGG | - | chr5_1:7745622-7745641 | None:intergenic | 25.0% |
| ! | ATAAGATTAAGTCAAATGGA+GGG | - | chr5_1:7745925-7745944 | None:intergenic | 25.0% |
| ! | AATAAGATTAAGTCAAATGG+AGG | - | chr5_1:7745926-7745945 | None:intergenic | 25.0% |
| ! | TCGAATAAGATTAAGTCAAA+TGG | - | chr5_1:7745929-7745948 | None:intergenic | 25.0% |
| !! | ATTTGACTTAATCTTATTCG+AGG | + | chr5_1:7745928-7745947 | Msa0714910:intron | 25.0% |
| ! | TTTCAAATTTCAACTGAAAG+AGG | - | chr5_1:7745968-7745987 | None:intergenic | 25.0% |
| ! | AGTATGGCATTAAATATCAT+GGG | - | chr5_1:7746215-7746234 | None:intergenic | 25.0% |
| ! | TATATTAATTCAACTCTCCT+TGG | + | chr5_1:7746362-7746381 | Msa0714910:CDS | 25.0% |
| !!! | TTCTTTGAAATGTCTTTCAA+TGG | - | chr5_1:7746390-7746409 | None:intergenic | 25.0% |
| ! | CTAAAATAACAACTTTGCAT+TGG | - | chr5_1:7746485-7746504 | None:intergenic | 25.0% |
| !!! | TTTTGAAGACTACAACTTTA+TGG | + | chr5_1:7746704-7746723 | Msa0714910:three_prime_UTR | 25.0% |
| ! | TGGAACTTACATTTCAAATT+TGG | + | chr5_1:7746724-7746743 | Msa0714910:three_prime_UTR | 25.0% |
| TATAGTTCTTTCTTAGCCTA+TGG | - | chr5_1:7741868-7741887 | None:intergenic | 30.0% | |
| ! | TTAATAGCACAATAATGGAG+AGG | - | chr5_1:7741916-7741935 | None:intergenic | 30.0% |
| GGTAGTTAATAGCACAATAA+TGG | - | chr5_1:7741921-7741940 | None:intergenic | 30.0% | |
| CAATGAACAACAAGAATTTC+TGG | - | chr5_1:7742145-7742164 | None:intergenic | 30.0% | |
| ATTAACCTCATTGCTCTTAA+TGG | + | chr5_1:7742206-7742225 | Msa0714910:CDS | 30.0% | |
| CCATCAAATATTCATTTAGC+TGG | - | chr5_1:7742385-7742404 | None:intergenic | 30.0% | |
| CCAGCTAAATGAATATTTGA+TGG | + | chr5_1:7742382-7742401 | Msa0714910:intron | 30.0% | |
| ! | TATTTTCCTTACTTCTTGAG+TGG | + | chr5_1:7742519-7742538 | Msa0714910:intron | 30.0% |
| ! | TATGGGGTCACTAATTTTAT+CGG | - | chr5_1:7742764-7742783 | None:intergenic | 30.0% |
| !!! | TGACCCCATATTTTTTTTTG+TGG | + | chr5_1:7742774-7742793 | Msa0714910:intron | 30.0% |
| GGTCACCACAAAAAAAAATA+TGG | - | chr5_1:7742782-7742801 | None:intergenic | 30.0% | |
| CATTTCTTCATGAAAATAGC+TGG | + | chr5_1:7743063-7743082 | Msa0714910:intron | 30.0% | |
| ! | CTTTTGCTTATATTAGTGAC+CGG | - | chr5_1:7743479-7743498 | None:intergenic | 30.0% |
| ! | CTTTTGCTTATATTAGTGAC+CGG | + | chr5_1:7743479-7743498 | Msa0714910:intron | 30.0% |
| !!! | TGCAAACTTTTGAAATGGAT+TGG | - | chr5_1:7743550-7743569 | None:intergenic | 30.0% |
| !! | AGCAATGCAAACTTTTGAAA+TGG | - | chr5_1:7743555-7743574 | None:intergenic | 30.0% |
| TTCAAAAGTTTGCATTGCTA+AGG | + | chr5_1:7743556-7743575 | Msa0714910:intron | 30.0% | |
| !! | GAAGACAAAATCGTTTTAGA+CGG | - | chr5_1:7744198-7744217 | None:intergenic | 30.0% |
| TCAAAATACTTGTCTTGCAT+TGG | + | chr5_1:7744277-7744296 | Msa0714910:CDS | 30.0% | |
| TACTATCAAATATGACTGGA+AGG | + | chr5_1:7744417-7744436 | Msa0714910:CDS | 30.0% | |
| GGATAGTATATAGATAGAGT+TGG | - | chr5_1:7744608-7744627 | None:intergenic | 30.0% | |
| ACTCTATCTATATACTATCC+TGG | + | chr5_1:7744608-7744627 | Msa0714910:intron | 30.0% | |
| !! | TAGCTTTTTAGATAGTGGTT+AGG | + | chr5_1:7745093-7745112 | Msa0714910:intron | 30.0% |
| CTTGATATTCTGCATATGTT+AGG | - | chr5_1:7745249-7745268 | None:intergenic | 30.0% | |
| AACCCAAGTCTTGATATTAT+TGG | + | chr5_1:7745279-7745298 | Msa0714910:CDS | 30.0% | |
| GTCCAATAATATCAAGACTT+GGG | - | chr5_1:7745284-7745303 | None:intergenic | 30.0% | |
| TGTCCAATAATATCAAGACT+TGG | - | chr5_1:7745285-7745304 | None:intergenic | 30.0% | |
| ATACCAAGAGATATCTAGAT+CGG | - | chr5_1:7745380-7745399 | None:intergenic | 30.0% | |
| ATCTAGATATCTCTTGGTAT+GGG | + | chr5_1:7745380-7745399 | Msa0714910:CDS | 30.0% | |
| ! | CAAATTCTTTTGTAGTCCTA+AGG | - | chr5_1:7745446-7745465 | None:intergenic | 30.0% |
| CTTAGGACTACAAAAGAATT+TGG | + | chr5_1:7745444-7745463 | Msa0714910:CDS | 30.0% | |
| TCATCTCTTTCAATCTCTTT+AGG | - | chr5_1:7745475-7745494 | None:intergenic | 30.0% | |
| AATAACATAATAGGCTAGTG+GGG | - | chr5_1:7745506-7745525 | None:intergenic | 30.0% | |
| CTAATAACATAATAGGCTAG+TGG | - | chr5_1:7745508-7745527 | None:intergenic | 30.0% | |
| ! | CACTAGCCTATTATGTTATT+AGG | + | chr5_1:7745506-7745525 | Msa0714910:CDS | 30.0% |
| TATAATTACGGGTCATAGTT+TGG | + | chr5_1:7745573-7745592 | Msa0714910:CDS | 30.0% | |
| ATAATTACGGGTCATAGTTT+GGG | + | chr5_1:7745574-7745593 | Msa0714910:CDS | 30.0% | |
| ! | ATGAGAAATTGTTGATTGAG+AGG | + | chr5_1:7745641-7745660 | Msa0714910:CDS | 30.0% |
| AGCATATCCTTATCATCATA+GGG | - | chr5_1:7745802-7745821 | None:intergenic | 30.0% | |
| ATATGCTCTTCAAACACTTT+GGG | + | chr5_1:7745815-7745834 | Msa0714910:CDS | 30.0% | |
| TTCATCTAAACAACGTTTGT+TGG | + | chr5_1:7746020-7746039 | Msa0714910:intron | 30.0% | |
| GGTGAAAAATAGTTCTTGTT+GGG | - | chr5_1:7746179-7746198 | None:intergenic | 30.0% | |
| AGGTGAAAAATAGTTCTTGT+TGG | - | chr5_1:7746180-7746199 | None:intergenic | 30.0% | |
| !! | ACAAGAACTATTTTTCACCT+TGG | + | chr5_1:7746180-7746199 | Msa0714910:CDS | 30.0% |
| CAGTATGGCATTAAATATCA+TGG | - | chr5_1:7746216-7746235 | None:intergenic | 30.0% | |
| CATGATATTTAATGCCATAC+TGG | + | chr5_1:7746214-7746233 | Msa0714910:CDS | 30.0% | |
| TTTACCATTGCCTATAGAAA+TGG | + | chr5_1:7746251-7746270 | Msa0714910:CDS | 30.0% | |
| !!! | GATGGTTTCTCTTCTTTTTT+AGG | + | chr5_1:7746291-7746310 | Msa0714910:CDS | 30.0% |
| !!! | GTTTCTCTTCTTTTTTAGGA+TGG | + | chr5_1:7746295-7746314 | Msa0714910:CDS | 30.0% |
| ATCGTTTCTAAGTGAAATGA+AGG | + | chr5_1:7746641-7746660 | Msa0714910:three_prime_UTR | 30.0% | |
| !!! | AAAACATCGATTCACTTTTG+TGG | - | chr5_1:7746753-7746772 | None:intergenic | 30.0% |
| AAGACATGTGTTATGACTTA+TGG | - | chr5_1:7746816-7746835 | None:intergenic | 30.0% | |
| CTATTAACTACCTTTAGCCA+TGG | + | chr5_1:7741929-7741948 | Msa0714910:exon | 35.0% | |
| !!! | ATTTTATTTTCCCGGGACAT+AGG | + | chr5_1:7742032-7742051 | Msa0714910:CDS | 35.0% |
| !!! | TTTTATTTTCCCGGGACATA+GGG | + | chr5_1:7742033-7742052 | Msa0714910:CDS | 35.0% |
| TTTGTGGATAGTAATGCTGA+AGG | + | chr5_1:7742065-7742084 | Msa0714910:CDS | 35.0% | |
| ! | ACTTGCCAAGATTGGTTATT+GGG | + | chr5_1:7742172-7742191 | Msa0714910:CDS | 35.0% |
| ! | TTGAGTCTTTTACAAGTGTC+TGG | + | chr5_1:7742467-7742486 | Msa0714910:intron | 35.0% |
| ! | TCTTTTACAAGTGTCTGGTT+TGG | + | chr5_1:7742472-7742491 | Msa0714910:intron | 35.0% |
| AAGATCTGACCAATACACAT+GGG | - | chr5_1:7742554-7742573 | None:intergenic | 35.0% | |
| ! | TCACTAATTTTATCGGGACA+AGG | - | chr5_1:7742757-7742776 | None:intergenic | 35.0% |
| ! | ATGGGGTCACTAATTTTATC+GGG | - | chr5_1:7742763-7742782 | None:intergenic | 35.0% |
| ! | ATTTTTATTGTCGCATCGCA+TGG | - | chr5_1:7743001-7743020 | None:intergenic | 35.0% |
| ACGTAAACTTAAATGTGTGC+CGG | - | chr5_1:7743124-7743143 | None:intergenic | 35.0% | |
| ! | AAACAAGCTTTTGTGCATGA+TGG | - | chr5_1:7743198-7743217 | None:intergenic | 35.0% |
| ! | TATTTTGCTTATACACCCTC+CGG | + | chr5_1:7743348-7743367 | Msa0714910:intron | 35.0% |
| CTTGTCTTGCATTGGAAATT+TGG | + | chr5_1:7744285-7744304 | Msa0714910:CDS | 35.0% | |
| TTTCTTACAGATGGAGTATG+TGG | + | chr5_1:7744542-7744561 | Msa0714910:intron | 35.0% | |
| TTCTTACAGATGGAGTATGT+GGG | + | chr5_1:7744543-7744562 | Msa0714910:intron | 35.0% | |
| ! | TAATATCAAGACTTGGGTTG+TGG | - | chr5_1:7745278-7745297 | None:intergenic | 35.0% |
| GATCTAGATATCTCTTGGTA+TGG | + | chr5_1:7745379-7745398 | Msa0714910:CDS | 35.0% | |
| GACTACAAAAGAATTTGGGT+TGG | + | chr5_1:7745449-7745468 | Msa0714910:CDS | 35.0% | |
| ! | GAAATTGTTGATTGAGAGGT+TGG | + | chr5_1:7745645-7745664 | Msa0714910:CDS | 35.0% |
| TTGGAAGGGATTTACACATT+TGG | + | chr5_1:7745664-7745683 | Msa0714910:CDS | 35.0% | |
| ATTGCAATGACATTGTTCCA+AGG | + | chr5_1:7745773-7745792 | Msa0714910:CDS | 35.0% | |
| GAGCATATCCTTATCATCAT+AGG | - | chr5_1:7745803-7745822 | None:intergenic | 35.0% | |
| GATATGCTCTTCAAACACTT+TGG | + | chr5_1:7745814-7745833 | Msa0714910:CDS | 35.0% | |
| ! | GGATCTGCCTTTTCTTTAAT+AGG | + | chr5_1:7745836-7745855 | Msa0714910:CDS | 35.0% |
| CATAGCGCCTATTAAAGAAA+AGG | - | chr5_1:7745846-7745865 | None:intergenic | 35.0% | |
| CAAACGTTGTTTAGATGAAG+AGG | - | chr5_1:7746019-7746038 | None:intergenic | 35.0% | |
| !!! | CTCTTCTTTTTTAGGATGGT+TGG | + | chr5_1:7746299-7746318 | Msa0714910:CDS | 35.0% |
| !! | ATGGTTGGTTTACTAATTCC+AGG | + | chr5_1:7746314-7746333 | Msa0714910:CDS | 35.0% |
| AATGTCTTTCAATGGATCCA+AGG | - | chr5_1:7746382-7746401 | None:intergenic | 35.0% | |
| TGTTCTCTTCTCAAAGAGTT+AGG | + | chr5_1:7746546-7746565 | Msa0714910:three_prime_UTR | 35.0% | |
| !! | AAACGATGCTATAGTTCTAG+AGG | - | chr5_1:7746601-7746620 | None:intergenic | 35.0% |
| ATGGCTTCTACTTGCGATAA+GGG | + | chr5_1:7741948-7741967 | Msa0714910:CDS | 40.0% | |
| TCAAAGAAATGGGCATCTTC+TGG | - | chr5_1:7742002-7742021 | None:intergenic | 40.0% | |
| CATAGGGCATAGGAAATTTG+TGG | + | chr5_1:7742049-7742068 | Msa0714910:CDS | 40.0% | |
| TAGTAATGCTGAAGGAGATG+TGG | + | chr5_1:7742073-7742092 | Msa0714910:CDS | 40.0% | |
| CAATAACCAATCTTGGCAAG+TGG | - | chr5_1:7742173-7742192 | None:intergenic | 40.0% | |
| ! | CACTTGCCAAGATTGGTTAT+TGG | + | chr5_1:7742171-7742190 | Msa0714910:CDS | 40.0% |
| CTCAACCCAATAACCAATCT+TGG | - | chr5_1:7742180-7742199 | None:intergenic | 40.0% | |
| AACCTCATTGCTCTTAATGG+AGG | + | chr5_1:7742209-7742228 | Msa0714910:CDS | 40.0% | |
| TTCCTCCATTAAGAGCAATG+AGG | - | chr5_1:7742214-7742233 | None:intergenic | 40.0% | |
| AAGACTCAAATTGCCTGCTT+GGG | - | chr5_1:7742456-7742475 | None:intergenic | 40.0% | |
| AAAGACTCAAATTGCCTGCT+TGG | - | chr5_1:7742457-7742476 | None:intergenic | 40.0% | |
| ACCAATACAAGCAACGAAAC+AGG | - | chr5_1:7742498-7742517 | None:intergenic | 40.0% | |
| CAAGATCTGACCAATACACA+TGG | - | chr5_1:7742555-7742574 | None:intergenic | 40.0% | |
| ! | AATGTCTGGGGTTCAAACTT+CGG | - | chr5_1:7742803-7742822 | None:intergenic | 40.0% |
| ATAGCTGGCAAAGTAGCATA+AGG | + | chr5_1:7743078-7743097 | Msa0714910:intron | 40.0% | |
| TAGCTGGCAAAGTAGCATAA+GGG | + | chr5_1:7743079-7743098 | Msa0714910:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | - | chr5_1:7743483-7743502 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | - | chr5_1:7743482-7743501 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr5_1:7743482-7743501 | Msa0714910:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr5_1:7743483-7743502 | Msa0714910:intron | 40.0% | |
| ! | TGTCTAAAATGTACACCCTC+CGG | - | chr5_1:7743501-7743520 | None:intergenic | 40.0% |
| AAGTTTGCATTGCTAAGGTG+AGG | + | chr5_1:7743561-7743580 | Msa0714910:intron | 40.0% | |
| !!! | ATGTGGGATTTTTTGACTGC+TGG | + | chr5_1:7744559-7744578 | Msa0714910:CDS | 40.0% |
| !!! | GGATTTTTTGACTGCTGGAA+TGG | + | chr5_1:7744564-7744583 | Msa0714910:CDS | 40.0% |
| ! | ACTTATGTGGTGGCTTTTAG+AGG | + | chr5_1:7745322-7745341 | Msa0714910:CDS | 40.0% |
| ! | TTGTTGATTGAGAGGTTGGA+AGG | + | chr5_1:7745649-7745668 | Msa0714910:CDS | 40.0% |
| ! | TGTTGATTGAGAGGTTGGAA+GGG | + | chr5_1:7745650-7745669 | Msa0714910:CDS | 40.0% |
| ACATTTGGACAACCAAGAGT+TGG | + | chr5_1:7745679-7745698 | Msa0714910:CDS | 40.0% | |
| TATCTCTCATCTCCAACTCT+TGG | - | chr5_1:7745694-7745713 | None:intergenic | 40.0% | |
| TTATCATCATAGGGCAACCT+TGG | - | chr5_1:7745793-7745812 | None:intergenic | 40.0% | |
| AAGGTTGCCCTATGATGATA+AGG | + | chr5_1:7745792-7745811 | Msa0714910:CDS | 40.0% | |
| TAATAGGCGCTATGAACTCA+AGG | + | chr5_1:7745852-7745871 | Msa0714910:CDS | 40.0% | |
| CAACTGAAAGAGGTAGTGTA+TGG | - | chr5_1:7745958-7745977 | None:intergenic | 40.0% | |
| ATGCCATACTGGAACTCATA+AGG | + | chr5_1:7746225-7746244 | Msa0714910:CDS | 40.0% | |
| AGGTCCATTTCTATAGGCAA+TGG | - | chr5_1:7746258-7746277 | None:intergenic | 40.0% | |
| GTAGTGAGGTCCATTTCTAT+AGG | - | chr5_1:7746264-7746283 | None:intergenic | 40.0% | |
| TCTTCTCAAAGAGTTAGGCA+TGG | + | chr5_1:7746551-7746570 | Msa0714910:three_prime_UTR | 40.0% | |
| GTCAAGACACTCACAACCAT+AGG | + | chr5_1:7741849-7741868 | Msa0714910:five_prime_UTR | 45.0% | |
| ! | AATAATGGAGAGGAGAGGAG+AGG | - | chr5_1:7741906-7741925 | None:intergenic | 45.0% |
| ! | AGCACAATAATGGAGAGGAG+AGG | - | chr5_1:7741911-7741930 | None:intergenic | 45.0% |
| CAAGTAGAAGCCATGGCTAA+AGG | - | chr5_1:7741942-7741961 | None:intergenic | 45.0% | |
| CTTATCGCAAGTAGAAGCCA+TGG | - | chr5_1:7741949-7741968 | None:intergenic | 45.0% | |
| CATGGCTTCTACTTGCGATA+AGG | + | chr5_1:7741947-7741966 | Msa0714910:exon | 45.0% | |
| ATTTCCTATGCCCTATGTCC+CGG | - | chr5_1:7742046-7742065 | None:intergenic | 45.0% | |
| TAATGCTGAAGGAGATGTGG+AGG | + | chr5_1:7742076-7742095 | Msa0714910:CDS | 45.0% | |
| AATGCTGAAGGAGATGTGGA+GGG | + | chr5_1:7742077-7742096 | Msa0714910:CDS | 45.0% | |
| AGGGAAGTTTCAGAGGTAGA+TGG | + | chr5_1:7742096-7742115 | Msa0714910:CDS | 45.0% | |
| GCTAAACCACTTGCCAAGAT+TGG | + | chr5_1:7742164-7742183 | Msa0714910:CDS | 45.0% | |
| GCCTGTTTCGTTGCTTGTAT+TGG | + | chr5_1:7742494-7742513 | Msa0714910:intron | 45.0% | |
| GAAGAGCCACTCAAGAAGTA+AGG | - | chr5_1:7742528-7742547 | None:intergenic | 45.0% | |
| CTCTTCTGACCCATGTGTAT+TGG | + | chr5_1:7742542-7742561 | Msa0714910:intron | 45.0% | |
| AGCTGGCAAAGTAGCATAAG+GGG | + | chr5_1:7743080-7743099 | Msa0714910:intron | 45.0% | |
| AAGGGGGTCTATATGCATCA+TGG | + | chr5_1:7743097-7743116 | Msa0714910:intron | 45.0% | |
| GGTCTATATGCATCATGGTC+CGG | + | chr5_1:7743102-7743121 | Msa0714910:intron | 45.0% | |
| TAAGGACCGTGACACTTATG+TGG | + | chr5_1:7745309-7745328 | Msa0714910:CDS | 45.0% | |
| AAGCCACCACATAAGTGTCA+CGG | - | chr5_1:7745318-7745337 | None:intergenic | 45.0% | |
| AACCCTTTGATGCAGATGCA+TGG | + | chr5_1:7745350-7745369 | Msa0714910:CDS | 45.0% | |
| CACCATGCATCTGCATCAAA+GGG | - | chr5_1:7745355-7745374 | None:intergenic | 45.0% | |
| ! | GCACCGATCTAGATATCTCT+TGG | + | chr5_1:7745374-7745393 | Msa0714910:CDS | 45.0% |
| ATCTCTTGGTATGGGATTCC+CGG | + | chr5_1:7745388-7745407 | Msa0714910:CDS | 45.0% | |
| ! | GGTGGATTCATGAAAGCCTT+AGG | + | chr5_1:7745427-7745446 | Msa0714910:CDS | 45.0% |
| ATTACGGGTCATAGTTTGGG+TGG | + | chr5_1:7745577-7745596 | Msa0714910:CDS | 45.0% | |
| ATCATGGGTATCACACACCA+AGG | - | chr5_1:7746200-7746219 | None:intergenic | 45.0% | |
| GCTCCTTATGAGTTCCAGTA+TGG | - | chr5_1:7746231-7746250 | None:intergenic | 45.0% | |
| AATGGACCTCACTACAGAGA+AGG | + | chr5_1:7746269-7746288 | Msa0714910:CDS | 45.0% | |
| AACCATCCTTCTCTGTAGTG+AGG | - | chr5_1:7746278-7746297 | None:intergenic | 45.0% | |
| ATTCCAGGATTACCTGCTCA+TGG | + | chr5_1:7746329-7746348 | Msa0714910:CDS | 45.0% | |
| !!! | AATTTTTCTTAATTTTTTAA+AGG | - | chr5_1:7743734-7743753 | None:intergenic | 5.0% |
| !!! | TTATAAAATAATTTTTAAGA+AGG | + | chr5_1:7744016-7744035 | Msa0714910:intron | 5.0% |
| !!! | TAAAAAATATTTTCATAAAA+AGG | - | chr5_1:7744824-7744843 | None:intergenic | 5.0% |
| TTTCCTATGCCCTATGTCCC+GGG | - | chr5_1:7742045-7742064 | None:intergenic | 50.0% | |
| GATGTGGAGGGAAGTTTCAG+AGG | + | chr5_1:7742089-7742108 | Msa0714910:CDS | 50.0% | |
| ATCAGATCTCAGTCCCAAGC+AGG | + | chr5_1:7742440-7742459 | Msa0714910:intron | 50.0% | |
| ACTCGTGAGCTTAGCTCAGT+TGG | - | chr5_1:7742849-7742868 | None:intergenic | 50.0% | |
| TGTCGCATCGCATGGACATA+GGG | - | chr5_1:7742993-7743012 | None:intergenic | 50.0% | |
| TTGTCGCATCGCATGGACAT+AGG | - | chr5_1:7742994-7743013 | None:intergenic | 50.0% | |
| GCTGGCAAAGTAGCATAAGG+GGG | + | chr5_1:7743081-7743100 | Msa0714910:intron | 50.0% | |
| CTTGACGCTTGAGAATGTCG+AGG | - | chr5_1:7744324-7744343 | None:intergenic | 50.0% | |
| GCACCATGCATCTGCATCAA+AGG | - | chr5_1:7745356-7745375 | None:intergenic | 50.0% | |
| GACCTCACTACAGAGAAGGA+TGG | + | chr5_1:7746273-7746292 | Msa0714910:CDS | 50.0% | |
| TAATCTTGGGGACCATGAGC+AGG | - | chr5_1:7746344-7746363 | None:intergenic | 50.0% | |
| TGGAGAGGAGAGGAGAGGAA+AGG | - | chr5_1:7741901-7741920 | None:intergenic | 55.0% | |
| TTTCCCGGGACATAGGGCAT+AGG | + | chr5_1:7742039-7742058 | Msa0714910:CDS | 55.0% | |
| AGCTAAGCTCACGAGTCACG+AGG | + | chr5_1:7742853-7742872 | Msa0714910:intron | 55.0% | |
| GGACCGTGACACTTATGTGG+TGG | + | chr5_1:7745312-7745331 | Msa0714910:CDS | 55.0% | |
| TGGTATGGGATTCCCGGTGT+AGG | + | chr5_1:7745394-7745413 | Msa0714910:CDS | 55.0% | |
| ATGGGATTCCCGGTGTAGGA+AGG | + | chr5_1:7745398-7745417 | Msa0714910:CDS | 55.0% | |
| TGGGATTCCCGGTGTAGGAA+GGG | + | chr5_1:7745399-7745418 | Msa0714910:CDS | 55.0% | |
| GGACCATGAGCAGGTAATCC+TGG | - | chr5_1:7746335-7746354 | None:intergenic | 55.0% | |
| CGCATCGCATGGACATAGGG+TGG | - | chr5_1:7742990-7743009 | None:intergenic | 60.0% | |
| ACCGTGTGCCCTTCCTACAC+CGG | - | chr5_1:7745410-7745429 | None:intergenic | 60.0% | |
| CCGTGTGCCCTTCCTACACC+GGG | - | chr5_1:7745409-7745428 | None:intergenic | 65.0% | |
| ! | CCCGGTGTAGGAAGGGCACA+CGG | + | chr5_1:7745406-7745425 | Msa0714910:CDS | 65.0% |
| ! | GGTGTAGGAAGGGCACACGG+TGG | + | chr5_1:7745409-7745428 | Msa0714910:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 7741842 | 7746840 | 7741842 | ID=Msa0714910;Name=Msa0714910 |
| chr5_1 | mRNA | 7741842 | 7746840 | 7741842 | ID=Msa0714910-mRNA-1;Parent=Msa0714910;Name=Msa0714910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=106|1|1|1|1|1|5|425|469 |
| chr5_1 | exon | 7741842 | 7742263 | 7741842 | ID=Msa0714910-mRNA-1:exon:3226;Parent=Msa0714910-mRNA-1 |
| chr5_1 | exon | 7744248 | 7744438 | 7744248 | ID=Msa0714910-mRNA-1:exon:3227;Parent=Msa0714910-mRNA-1 |
| chr5_1 | exon | 7744552 | 7744585 | 7744552 | ID=Msa0714910-mRNA-1:exon:3228;Parent=Msa0714910-mRNA-1 |
| chr5_1 | exon | 7745260 | 7745873 | 7745260 | ID=Msa0714910-mRNA-1:exon:3229;Parent=Msa0714910-mRNA-1 |
| chr5_1 | exon | 7746161 | 7746840 | 7746161 | ID=Msa0714910-mRNA-1:exon:3230;Parent=Msa0714910-mRNA-1 |
| chr5_1 | five_prime_UTR | 7741842 | 7741947 | 7741842 | ID=Msa0714910-mRNA-1:five_prime_utr;Parent=Msa0714910-mRNA-1 |
| chr5_1 | CDS | 7741948 | 7742263 | 7741948 | ID=Msa0714910-mRNA-1:cds;Parent=Msa0714910-mRNA-1 |
| chr5_1 | CDS | 7744248 | 7744438 | 7744248 | ID=Msa0714910-mRNA-1:cds;Parent=Msa0714910-mRNA-1 |
| chr5_1 | CDS | 7744552 | 7744585 | 7744552 | ID=Msa0714910-mRNA-1:cds;Parent=Msa0714910-mRNA-1 |
| chr5_1 | CDS | 7745260 | 7745873 | 7745260 | ID=Msa0714910-mRNA-1:cds;Parent=Msa0714910-mRNA-1 |
| chr5_1 | CDS | 7746161 | 7746415 | 7746161 | ID=Msa0714910-mRNA-1:cds;Parent=Msa0714910-mRNA-1 |
| chr5_1 | three_prime_UTR | 7746416 | 7746840 | 7746416 | ID=Msa0714910-mRNA-1:three_prime_utr;Parent=Msa0714910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
