Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756920 | sp|F4JFU8|OBL1_ARATH | 38.723 | 501 | 265 | 7 | 2 | 460 | 8 | 508 | 2.05e-119 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756920 | G7K6N4 | 97.441 | 469 | 12 | 0 | 1 | 469 | 1 | 469 | 0.0 | 952 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714910 | Msa0756920 | 0.842057 | 3.261595e-58 | -8.615850e-47 |
| Msa0756920 | Msa0836480 | 0.988188 | 4.766605e-173 | -8.615850e-47 |
| Msa0756920 | Msa0962070 | 0.800403 | 1.465135e-48 | -8.615850e-47 |
| Msa0343170 | Msa0756920 | 0.984568 | 6.109349e-161 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756920 | MtrunA17_Chr5g0402171 | 97.441 | 469 | 12 | 0 | 1 | 469 | 1 | 469 | 0.0 | 952 |
| Msa0756920 | MtrunA17_Chr1g0153271 | 48.684 | 456 | 231 | 3 | 13 | 467 | 11 | 464 | 1.84e-159 | 459 |
| Msa0756920 | MtrunA17_Chr7g0276561 | 39.752 | 483 | 256 | 6 | 13 | 460 | 8 | 490 | 2.23e-121 | 363 |
| Msa0756920 | MtrunA17_Chr3g0123741 | 53.357 | 283 | 111 | 2 | 181 | 462 | 37 | 299 | 8.37e-105 | 314 |
| Msa0756920 | MtrunA17_Chr3g0123751 | 41.964 | 112 | 52 | 3 | 73 | 171 | 30 | 141 | 1.48e-16 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756920 | AT5G42930.1 | 50.985 | 457 | 217 | 4 | 12 | 462 | 6 | 461 | 4.95e-169 | 484 |
| Msa0756920 | AT1G56630.1 | 48.932 | 468 | 219 | 6 | 12 | 461 | 6 | 471 | 8.53e-158 | 456 |
| Msa0756920 | AT5G67050.1 | 47.436 | 468 | 231 | 7 | 1 | 459 | 1 | 462 | 6.51e-157 | 454 |
| Msa0756920 | AT5G42930.2 | 48.556 | 381 | 189 | 4 | 12 | 386 | 6 | 385 | 2.32e-133 | 391 |
| Msa0756920 | AT1G45201.1 | 44.635 | 466 | 251 | 5 | 3 | 464 | 2 | 464 | 2.40e-131 | 389 |
| Msa0756920 | AT1G45201.3 | 44.635 | 466 | 251 | 5 | 3 | 464 | 27 | 489 | 4.01e-131 | 389 |
| Msa0756920 | AT3G14360.1 | 38.723 | 501 | 265 | 7 | 2 | 460 | 8 | 508 | 2.08e-120 | 362 |
| Msa0756920 | AT1G45201.2 | 45.501 | 389 | 203 | 6 | 3 | 386 | 2 | 386 | 3.51e-106 | 321 |
Find 137 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTTGATAGTATATTTA+AGG | 0.110916 | 5_2:-11555171 | None:intergenic |
| CCTAGGACTACAAAAGAATT+TGG | 0.130121 | 5_2:+11556210 | Msa0756920:CDS |
| GATATTATTGGACAAATTTA+AGG | 0.140061 | 5_2:+11556057 | Msa0756920:CDS |
| CTTGTCTTGCATTGGAAATT+TGG | 0.140513 | 5_2:+11555048 | Msa0756920:CDS |
| TGGAACTTACATTTCAAATT+TGG | 0.161115 | 5_2:+11557584 | Msa0756920:three_prime_UTR |
| ATTAACCTCATTGCTCTTAA+TGG | 0.184975 | 5_2:+11553126 | Msa0756920:CDS |
| TCAAAATTCAACAATATTAT+AGG | 0.188034 | 5_2:+11557526 | Msa0756920:three_prime_UTR |
| CACTAGCCTATTATGTTATT+AGG | 0.196321 | 5_2:+11556272 | Msa0756920:CDS |
| CAATGAACAACAAGAATTTC+TGG | 0.201915 | 5_2:-11553062 | None:intergenic |
| AACCCAAGTCTTGATATTAT+TGG | 0.213124 | 5_2:+11556045 | Msa0756920:CDS |
| CACTTGCCAAGATTGGTTAT+TGG | 0.262528 | 5_2:+11553091 | Msa0756920:CDS |
| TATAATTACGGGTCATAGTT+TGG | 0.267812 | 5_2:+11556339 | Msa0756920:CDS |
| TCATCTCTTTCAATCTCTTT+AGG | 0.270056 | 5_2:-11556238 | None:intergenic |
| TCAAAGAAATGGGCATCTTC+TGG | 0.280117 | 5_2:-11552919 | None:intergenic |
| TCTATTATGAGGAATGATTT+AGG | 0.281682 | 5_2:-11557710 | None:intergenic |
| TAATGCAAAGTTTATAATTA+CGG | 0.300822 | 5_2:+11556327 | Msa0756920:CDS |
| TACGAATAATATCAAAGAAA+TGG | 0.318968 | 5_2:-11552930 | None:intergenic |
| ACTTGCCAAGATTGGTTATT+GGG | 0.319969 | 5_2:+11553092 | Msa0756920:CDS |
| ACTAGCCTATTATGTTATTA+GGG | 0.331798 | 5_2:+11556273 | Msa0756920:CDS |
| ATCTCTTGGTATGGGATTCC+CGG | 0.333988 | 5_2:+11556154 | Msa0756920:CDS |
| ATGGTTGGTTTACTAATTCC+AGG | 0.346840 | 5_2:+11557070 | Msa0756920:CDS |
| GTAATTATAAACTTTGCATT+AGG | 0.348338 | 5_2:-11556325 | None:intergenic |
| TGTTCTCTTCTCAAAGAGTT+AGG | 0.352505 | 5_2:+11557300 | Msa0756920:three_prime_UTR |
| AATGCAAAGTTTATAATTAC+GGG | 0.356213 | 5_2:+11556328 | Msa0756920:CDS |
| TATGTCCCTAATAACATAAT+AGG | 0.359007 | 5_2:-11556278 | None:intergenic |
| TTCTTTGAAATGTCTTTCAA+TGG | 0.359014 | 5_2:-11557143 | None:intergenic |
| GGTAGTTAATAGCACAATAA+TGG | 0.360302 | 5_2:-11552838 | None:intergenic |
| AAGACATGTGTTATGACTTA+TGG | 0.368603 | 5_2:-11557673 | None:intergenic |
| AGGAATGATTTAGGCTTATG+AGG | 0.381367 | 5_2:-11557701 | None:intergenic |
| GCTAAACCACTTGCCAAGAT+TGG | 0.383519 | 5_2:+11553084 | Msa0756920:CDS |
| ATAATTACGGGTCATAGTTT+GGG | 0.384486 | 5_2:+11556340 | Msa0756920:CDS |
| AGTTGAATTAATATAATCTT+GGG | 0.390448 | 5_2:-11557110 | None:intergenic |
| ATATGCTCTTCAAACACTTT+GGG | 0.390714 | 5_2:+11556581 | Msa0756920:CDS |
| TTTACCATTGCCTATAGAAA+TGG | 0.395799 | 5_2:+11557007 | Msa0756920:CDS |
| CATGATATTTAATGCCATAC+TGG | 0.399831 | 5_2:+11556970 | Msa0756920:CDS |
| TCAAAATACTTGTCTTGCAT+TGG | 0.400909 | 5_2:+11555040 | Msa0756920:CDS |
| CAGTATGGCATTAAATATCA+TGG | 0.402639 | 5_2:-11556969 | None:intergenic |
| CTAGGACTACAAAAGAATTT+GGG | 0.404063 | 5_2:+11556211 | Msa0756920:CDS |
| TATATTAATTCAACTCTCCT+TGG | 0.404606 | 5_2:+11557118 | Msa0756920:CDS |
| ATGGCTTCTACTTGCGATAA+GGG | 0.405244 | 5_2:+11552868 | Msa0756920:CDS |
| GATATGCTCTTCAAACACTT+TGG | 0.411572 | 5_2:+11556580 | Msa0756920:CDS |
| TTGGAAGGGATTTACACATT+TGG | 0.413556 | 5_2:+11556430 | Msa0756920:CDS |
| GATCTTGATATCTCTTGGTA+TGG | 0.418281 | 5_2:+11556145 | Msa0756920:CDS |
| GAGTTGAATTAATATAATCT+TGG | 0.418572 | 5_2:-11557111 | None:intergenic |
| CATGGCTTCTACTTGCGATA+AGG | 0.419594 | 5_2:+11552867 | Msa0756920:exon |
| GCAATAAACAAACCTACAAT+AGG | 0.419899 | 5_2:-11556521 | None:intergenic |
| ATTATAATTAACTTTCTCTC+AGG | 0.423060 | 5_2:+11553162 | Msa0756920:CDS |
| ATCGTTTCCAAGTGAAATGA+AGG | 0.424425 | 5_2:+11557501 | Msa0756920:three_prime_UTR |
| TCATGTAAGAACATAATTGT+TGG | 0.426080 | 5_2:-11556385 | None:intergenic |
| ACGAATAATATCAAAGAAAT+GGG | 0.427070 | 5_2:-11552929 | None:intergenic |
| GCTCCTTATGAGTTCCAGTA+TGG | 0.438651 | 5_2:-11556984 | None:intergenic |
| GAAATTGTTGATTGAGAGGT+TGG | 0.442736 | 5_2:+11556411 | Msa0756920:CDS |
| CTCAACCCAATAACCAATCT+TGG | 0.446288 | 5_2:-11553097 | None:intergenic |
| ATTTCCTATGCCCTATGTCC+CGG | 0.451521 | 5_2:-11552963 | None:intergenic |
| ATTAGGGACATATTAAGAAA+AGG | 0.454297 | 5_2:+11556289 | Msa0756920:CDS |
| AAAATCGTATAACCTATTGT+AGG | 0.457710 | 5_2:+11556509 | Msa0756920:CDS |
| CTAAAATAACAACTTTGCAT+TGG | 0.458839 | 5_2:-11557238 | None:intergenic |
| TTTCTTACAGATGGAGTATG+TGG | 0.459644 | 5_2:+11555309 | Msa0756920:intron |
| TATCTCTCATCTCCAACTCT+TGG | 0.464603 | 5_2:-11556457 | None:intergenic |
| GGAATGATTTAGGCTTATGA+GGG | 0.465369 | 5_2:-11557700 | None:intergenic |
| TTGTTGATTGAGAGGTTGGA+AGG | 0.470831 | 5_2:+11556415 | Msa0756920:CDS |
| GGACCATGAGCAGGTAATCC+TGG | 0.476008 | 5_2:-11557088 | None:intergenic |
| GCACCATGCATCTGCATCAA+AGG | 0.477633 | 5_2:-11556119 | None:intergenic |
| GTAGTGAGGTCCATTTCTAT+AGG | 0.479877 | 5_2:-11557017 | None:intergenic |
| GCACCGATCTTGATATCTCT+TGG | 0.481432 | 5_2:+11556140 | Msa0756920:CDS |
| CAAGTAGAAGCCATGGCTTA+AGG | 0.481455 | 5_2:-11552859 | None:intergenic |
| ATGCCATACTGGAACTCATA+AGG | 0.484427 | 5_2:+11556981 | Msa0756920:CDS |
| CATAGCGCCTATTAAAGAAA+AGG | 0.484819 | 5_2:-11556609 | None:intergenic |
| TTTGAAACCTTCATTTCACT+TGG | 0.488794 | 5_2:-11557508 | None:intergenic |
| CTATGTTAATCTATCTATGA+TGG | 0.490863 | 5_2:+11555117 | Msa0756920:CDS |
| AGGGAAGTTTCAGAGGTAGA+TGG | 0.492187 | 5_2:+11553016 | Msa0756920:CDS |
| GTCCAATAATATCAAGACTT+GGG | 0.497259 | 5_2:-11556047 | None:intergenic |
| TGTCCAATAATATCAAGACT+TGG | 0.500256 | 5_2:-11556048 | None:intergenic |
| GAGAAAGTTAATTATAATCA+TGG | 0.501031 | 5_2:-11553157 | None:intergenic |
| AAGGTTGCCCTACGATGATA+AGG | 0.503975 | 5_2:+11556558 | Msa0756920:CDS |
| GATGTGGAGGGAAGTTTCAG+AGG | 0.504440 | 5_2:+11553009 | Msa0756920:CDS |
| CATAGGGCATAGGAAATTTG+TGG | 0.508090 | 5_2:+11552969 | Msa0756920:CDS |
| ACATTTGGACAACCAAGAGT+TGG | 0.512602 | 5_2:+11556445 | Msa0756920:CDS |
| TTATCATCGTAGGGCAACCT+TGG | 0.514640 | 5_2:-11556556 | None:intergenic |
| AATATACTATCAAATATGAC+TGG | 0.515887 | 5_2:+11555176 | Msa0756920:CDS |
| TGGTATGGGATTCCCGGTGT+TGG | 0.520545 | 5_2:+11556160 | Msa0756920:CDS |
| ATCTTGATATCTCTTGGTAT+GGG | 0.521138 | 5_2:+11556146 | Msa0756920:CDS |
| CACCATGCATCTGCATCAAA+GGG | 0.523948 | 5_2:-11556118 | None:intergenic |
| TAATAACATAATAGGCTAGT+GGG | 0.524972 | 5_2:-11556270 | None:intergenic |
| TAATATCAAGACTTGGGTTG+TGG | 0.526921 | 5_2:-11556041 | None:intergenic |
| TGTTGATTGAGAGGTTGGAA+GGG | 0.531128 | 5_2:+11556416 | Msa0756920:CDS |
| TAATCTTGGGGACCATGAGC+AGG | 0.531416 | 5_2:-11557097 | None:intergenic |
| TTTCCTATGCCCTATGTCCC+GGG | 0.534655 | 5_2:-11552962 | None:intergenic |
| TTCTTACAGATGGAGTATGT+GGG | 0.535001 | 5_2:+11555310 | Msa0756920:intron |
| GAGCATATCCTTATCATCGT+AGG | 0.536248 | 5_2:-11556566 | None:intergenic |
| TGATTTAGGCTTATGAGGGG+AGG | 0.546732 | 5_2:-11557696 | None:intergenic |
| TAAGGACCGTGACACTTATG+TGG | 0.548736 | 5_2:+11556075 | Msa0756920:CDS |
| AGCATATCCTTATCATCGTA+GGG | 0.559509 | 5_2:-11556565 | None:intergenic |
| TACTATCAAATATGACTGGA+AGG | 0.569156 | 5_2:+11555180 | Msa0756920:CDS |
| ATGAGAAATTGTTGATTGAG+AGG | 0.569804 | 5_2:+11556407 | Msa0756920:CDS |
| AATGTCTTTCAATGGATCCA+AGG | 0.570092 | 5_2:-11557135 | None:intergenic |
| CCGTGTGCTCTTCCAACACC+GGG | 0.570804 | 5_2:-11556172 | None:intergenic |
| CTTGACGCTTGAGAATGTCG+AGG | 0.572164 | 5_2:-11555084 | None:intergenic |
| TAATGCTGAAGGAGATGTGG+AGG | 0.574281 | 5_2:+11552996 | Msa0756920:CDS |
| AACCTCATTGCTCTTAATGG+AGG | 0.577915 | 5_2:+11553129 | Msa0756920:CDS |
| CTATTAACTACCTTAAGCCA+TGG | 0.578599 | 5_2:+11552849 | Msa0756920:exon |
| GACTACAAAAGAATTTGGGT+TGG | 0.579558 | 5_2:+11556215 | Msa0756920:CDS |
| AGTATGGCATTAAATATCAT+GGG | 0.582068 | 5_2:-11556968 | None:intergenic |
| ACCGTGTGCTCTTCCAACAC+CGG | 0.586541 | 5_2:-11556173 | None:intergenic |
| CCCGGTGTTGGAAGAGCACA+CGG | 0.587015 | 5_2:+11556172 | Msa0756920:CDS |
| ATTGCAATGACGTTGTTCCA+AGG | 0.588263 | 5_2:+11556539 | Msa0756920:CDS |
| TCTTCTCAAAGAGTTAGGCA+TGG | 0.589207 | 5_2:+11557305 | Msa0756920:three_prime_UTR |
| CAATAACCAATCTTGGCAAG+TGG | 0.589271 | 5_2:-11553090 | None:intergenic |
| TAATAGGCGCTATGAACTCA+AGG | 0.589923 | 5_2:+11556618 | Msa0756920:CDS |
| CTAATAACATAATAGGCTAG+TGG | 0.592254 | 5_2:-11556271 | None:intergenic |
| TTTCCCGGGACATAGGGCAT+AGG | 0.592932 | 5_2:+11552959 | Msa0756920:CDS |
| AATGGACCTCACTACAGAGA+AGG | 0.595853 | 5_2:+11557025 | Msa0756920:CDS |
| ATTCCAGGATTACCTGCTCA+TGG | 0.596826 | 5_2:+11557085 | Msa0756920:CDS |
| AGGTCCATTTCTATAGGCAA+TGG | 0.597360 | 5_2:-11557011 | None:intergenic |
| ATTACGGGTCATAGTTTGGG+TGG | 0.597647 | 5_2:+11556343 | Msa0756920:CDS |
| ATGGACCTCACTACAGAGAA+GGG | 0.604978 | 5_2:+11557026 | Msa0756920:CDS |
| CTTATCGCAAGTAGAAGCCA+TGG | 0.610270 | 5_2:-11552866 | None:intergenic |
| AATGCTGAAGGAGATGTGGA+GGG | 0.614108 | 5_2:+11552997 | Msa0756920:CDS |
| GTCAAGACACTCACAACCAT+AGG | 0.616784 | 5_2:+11552774 | Msa0756920:five_prime_UTR |
| ATACCAAGAGATATCAAGAT+CGG | 0.620912 | 5_2:-11556143 | None:intergenic |
| TAGTAATGCTGAAGGAGATG+TGG | 0.621964 | 5_2:+11552993 | Msa0756920:CDS |
| GGTGGATTCATGAAAGCCCT+AGG | 0.622022 | 5_2:+11556193 | Msa0756920:CDS |
| AATAATGGAGAGGAGAGGAA+AGG | 0.627315 | 5_2:-11552823 | None:intergenic |
| TTTGTGGATAGTAATGCTGA+AGG | 0.630116 | 5_2:+11552985 | Msa0756920:CDS |
| AACCCTTTGATGCAGATGCA+TGG | 0.632417 | 5_2:+11556116 | Msa0756920:CDS |
| GTTGAATTAATATAATCTTG+GGG | 0.644078 | 5_2:-11557109 | None:intergenic |
| AATAACATAATAGGCTAGTG+GGG | 0.646861 | 5_2:-11556269 | None:intergenic |
| GGACCGTGACACTTATGTGG+TGG | 0.649989 | 5_2:+11556078 | Msa0756920:CDS |
| TTAATAGCACAATAATGGAG+AGG | 0.659188 | 5_2:-11552833 | None:intergenic |
| GAATGATTTAGGCTTATGAG+GGG | 0.664880 | 5_2:-11557699 | None:intergenic |
| ATCATGGGTATTACACACCA+AGG | 0.666303 | 5_2:-11556953 | None:intergenic |
| TTCCTCCATTAAGAGCAATG+AGG | 0.669764 | 5_2:-11553131 | None:intergenic |
| AAGCCACCACATAAGTGTCA+CGG | 0.670111 | 5_2:-11556081 | None:intergenic |
| AACCACCCTTCTCTGTAGTG+AGG | 0.670296 | 5_2:-11557031 | None:intergenic |
| AGCACAATAATGGAGAGGAG+AGG | 0.671684 | 5_2:-11552828 | None:intergenic |
| GACCTCACTACAGAGAAGGG+TGG | 0.721164 | 5_2:+11557029 | Msa0756920:CDS |
| GGTGTTGGAAGAGCACACGG+TGG | 0.802780 | 5_2:+11556175 | Msa0756920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTCTATTATTTTTAG+AGG | - | chr5_2:11553875-11553894 | None:intergenic | 10.0% |
| !! | TAATTTCAATATACAAATAT+TGG | - | chr5_2:11554466-11554485 | None:intergenic | 10.0% |
| !! | TTTATACAGATTCAAAATAT+GGG | - | chr5_2:11553805-11553824 | None:intergenic | 15.0% |
| !!! | TTTTATACAGATTCAAAATA+TGG | - | chr5_2:11553806-11553825 | None:intergenic | 15.0% |
| !! | GATGAAATTTATTAATTCAA+TGG | - | chr5_2:11554142-11554161 | None:intergenic | 15.0% |
| !! | CTATTTATTAAATGAAAACT+AGG | + | chr5_2:11554292-11554311 | Msa0756920:intron | 15.0% |
| !!! | AAGTCAACATAATTAAATTT+TGG | - | chr5_2:11554692-11554711 | None:intergenic | 15.0% |
| !!! | TCTATATATAAGTTGATTTT+TGG | + | chr5_2:11554731-11554750 | Msa0756920:intron | 15.0% |
| !!! | CTATATATAAGTTGATTTTT+GGG | + | chr5_2:11554732-11554751 | Msa0756920:intron | 15.0% |
| !!! | TATATATAAGTTGATTTTTG+GGG | + | chr5_2:11554733-11554752 | Msa0756920:intron | 15.0% |
| !!! | TTGTTATTATAAACAAAAAC+AGG | + | chr5_2:11554989-11555008 | Msa0756920:intron | 15.0% |
| !!! | CATATTTGATAGTATATTTA+AGG | - | chr5_2:11555174-11555193 | None:intergenic | 15.0% |
| !!! | AACTTATTTGTTAAGTTTTT+TGG | + | chr5_2:11555212-11555231 | Msa0756920:intron | 15.0% |
| !!! | ACTTATTTGTTAAGTTTTTT+GGG | + | chr5_2:11555213-11555232 | Msa0756920:intron | 15.0% |
| !! | AAGAAAGAAAGAAAAAAAAT+AGG | - | chr5_2:11555291-11555310 | None:intergenic | 15.0% |
| !! | TAATGCAAAGTTTATAATTA+CGG | + | chr5_2:11556327-11556346 | Msa0756920:CDS | 15.0% |
| !! | AGTTGAATTAATATAATCTT+GGG | - | chr5_2:11557113-11557132 | None:intergenic | 15.0% |
| !! | TCAAAATTCAACAATATTAT+AGG | + | chr5_2:11557526-11557545 | Msa0756920:three_prime_UTR | 15.0% |
| !! | ACGAATAATATCAAAGAAAT+GGG | - | chr5_2:11552932-11552951 | None:intergenic | 20.0% |
| !! | TACGAATAATATCAAAGAAA+TGG | - | chr5_2:11552933-11552952 | None:intergenic | 20.0% |
| !!! | TTATTCGTATTTTATTTTCC+CGG | + | chr5_2:11552944-11552963 | Msa0756920:CDS | 20.0% |
| !! | GAGAAAGTTAATTATAATCA+TGG | - | chr5_2:11553160-11553179 | None:intergenic | 20.0% |
| !! | ATTATAATTAACTTTCTCTC+AGG | + | chr5_2:11553162-11553181 | Msa0756920:CDS | 20.0% |
| !! | ATACCTAATTAACAAGTAAA+AGG | + | chr5_2:11553257-11553276 | Msa0756920:intron | 20.0% |
| !!! | TTTCCTTTTACTTGTTAATT+AGG | - | chr5_2:11553263-11553282 | None:intergenic | 20.0% |
| !! | TTATACAGATTCAAAATATG+GGG | - | chr5_2:11553804-11553823 | None:intergenic | 20.0% |
| !! | AGAATTGAACTAATTTGAAT+CGG | - | chr5_2:11554065-11554084 | None:intergenic | 20.0% |
| !!! | TATTGATTCCATGATAAAAA+AGG | + | chr5_2:11554221-11554240 | Msa0756920:intron | 20.0% |
| !! | ATGTATAAGCAAAATAATCT+TGG | - | chr5_2:11554261-11554280 | None:intergenic | 20.0% |
| !!! | AATAGCTCTATTATTTGATT+AGG | - | chr5_2:11554383-11554402 | None:intergenic | 20.0% |
| !! | ACTTATAGTATAAAAGACTT+TGG | + | chr5_2:11554708-11554727 | Msa0756920:intron | 20.0% |
| !!! | TATTTTGATGATTTAGGATT+TGG | - | chr5_2:11555028-11555047 | None:intergenic | 20.0% |
| !! | AATATACTATCAAATATGAC+TGG | + | chr5_2:11555176-11555195 | Msa0756920:CDS | 20.0% |
| !!! | CTTATTTGTTAAGTTTTTTG+GGG | + | chr5_2:11555214-11555233 | Msa0756920:intron | 20.0% |
| !! | AAGAAAAAAAACTCATTTAG+TGG | + | chr5_2:11555417-11555436 | Msa0756920:intron | 20.0% |
| !! | GATATTATTGGACAAATTTA+AGG | + | chr5_2:11556057-11556076 | Msa0756920:CDS | 20.0% |
| !! | GTAATTATAAACTTTGCATT+AGG | - | chr5_2:11556328-11556347 | None:intergenic | 20.0% |
| !! | AATGCAAAGTTTATAATTAC+GGG | + | chr5_2:11556328-11556347 | Msa0756920:CDS | 20.0% |
| !! | ATATATGCAACAAAAAATGA+AGG | + | chr5_2:11556486-11556505 | Msa0756920:CDS | 20.0% |
| !! | ATCAAAGTTCAAATTTCAAT+CGG | - | chr5_2:11556735-11556754 | None:intergenic | 20.0% |
| !!! | TATATCCAGTATATTACTTT+TGG | - | chr5_2:11556831-11556850 | None:intergenic | 20.0% |
| !! | GTTGAATTAATATAATCTTG+GGG | - | chr5_2:11557112-11557131 | None:intergenic | 20.0% |
| !! | GAGTTGAATTAATATAATCT+TGG | - | chr5_2:11557114-11557133 | None:intergenic | 20.0% |
| !!! | AACGATTTATACTTTTTGAT+AGG | - | chr5_2:11557487-11557506 | None:intergenic | 20.0% |
| !!! | TATAGTTCTTTTTTAGCCTA+TGG | - | chr5_2:11552793-11552812 | None:intergenic | 25.0% |
| !!! | TATTCGTATTTTATTTTCCC+GGG | + | chr5_2:11552945-11552964 | Msa0756920:CDS | 25.0% |
| ! | ACAAGTAAAAGGAAAAAAAG+TGG | + | chr5_2:11553268-11553287 | Msa0756920:intron | 25.0% |
| ! | CAGCTAAATGAATATTTGAT+GGG | + | chr5_2:11553301-11553320 | Msa0756920:intron | 25.0% |
| ! | TCACCACAAAAAAAAATATG+GGG | - | chr5_2:11553698-11553717 | None:intergenic | 25.0% |
| ! | GTCACCACAAAAAAAAATAT+GGG | - | chr5_2:11553699-11553718 | None:intergenic | 25.0% |
| ! | AGTCACCACAAAAAAAAATA+TGG | - | chr5_2:11553700-11553719 | None:intergenic | 25.0% |
| ! | TATAGTATATGAAATGTCTG+GGG | - | chr5_2:11553733-11553752 | None:intergenic | 25.0% |
| ! | GTATAGTATATGAAATGTCT+GGG | - | chr5_2:11553734-11553753 | None:intergenic | 25.0% |
| ! | TGTATAGTATATGAAATGTC+TGG | - | chr5_2:11553735-11553754 | None:intergenic | 25.0% |
| !!! | CACAAATACCTTTTTTATCA+TGG | - | chr5_2:11554232-11554251 | None:intergenic | 25.0% |
| !!! | ATAAAAAAGGTATTTGTGCA+TGG | + | chr5_2:11554234-11554253 | Msa0756920:intron | 25.0% |
| !!! | TTAGCATTCTAGAATTTTGT+TGG | + | chr5_2:11554524-11554543 | Msa0756920:intron | 25.0% |
| !!! | TAAAGAGCAACTTTTGTTTT+TGG | - | chr5_2:11554924-11554943 | None:intergenic | 25.0% |
| ! | ATAAACAAAAACAGGTCATT+TGG | + | chr5_2:11554997-11555016 | Msa0756920:intron | 25.0% |
| !!! | GACAAGTATTTTGATGATTT+AGG | - | chr5_2:11555034-11555053 | None:intergenic | 25.0% |
| ! | CTATGTTAATCTATCTATGA+TGG | + | chr5_2:11555117-11555136 | Msa0756920:CDS | 25.0% |
| !! | TAAAGTAGCTTTTTAGATAG+TGG | + | chr5_2:11555854-11555873 | Msa0756920:intron | 25.0% |
| ! | AAAGCAAGCAAAAATAAGTA+GGG | - | chr5_2:11555885-11555904 | None:intergenic | 25.0% |
| ! | AAAAGCAAGCAAAAATAAGT+AGG | - | chr5_2:11555886-11555905 | None:intergenic | 25.0% |
| ! | TTGAAGAATAGTTAACTGTA+TGG | + | chr5_2:11555965-11555984 | Msa0756920:intron | 25.0% |
| ! | TAATAACATAATAGGCTAGT+GGG | - | chr5_2:11556273-11556292 | None:intergenic | 25.0% |
| !! | ACTAGCCTATTATGTTATTA+GGG | + | chr5_2:11556273-11556292 | Msa0756920:CDS | 25.0% |
| ! | TATGTCCCTAATAACATAAT+AGG | - | chr5_2:11556281-11556300 | None:intergenic | 25.0% |
| ! | ATTAGGGACATATTAAGAAA+AGG | + | chr5_2:11556289-11556308 | Msa0756920:CDS | 25.0% |
| ! | TCATGTAAGAACATAATTGT+TGG | - | chr5_2:11556388-11556407 | None:intergenic | 25.0% |
| ! | AAAATCGTATAACCTATTGT+AGG | + | chr5_2:11556509-11556528 | Msa0756920:CDS | 25.0% |
| ! | TCAAATCAGATTAAGTCAAA+CGG | - | chr5_2:11556690-11556709 | None:intergenic | 25.0% |
| ! | TCAAAGTTCAAATTTCAATC+GGG | - | chr5_2:11556734-11556753 | None:intergenic | 25.0% |
| ! | TCATACCAAAAGTAATATAC+TGG | + | chr5_2:11556823-11556842 | Msa0756920:intron | 25.0% |
| ! | AGTATGGCATTAAATATCAT+GGG | - | chr5_2:11556971-11556990 | None:intergenic | 25.0% |
| ! | TATATTAATTCAACTCTCCT+TGG | + | chr5_2:11557118-11557137 | Msa0756920:CDS | 25.0% |
| !!! | TTCTTTGAAATGTCTTTCAA+TGG | - | chr5_2:11557146-11557165 | None:intergenic | 25.0% |
| ! | CTAAAATAACAACTTTGCAT+TGG | - | chr5_2:11557241-11557260 | None:intergenic | 25.0% |
| !!! | TTTTGAAGACTACAACTTTA+TGG | + | chr5_2:11557564-11557583 | Msa0756920:three_prime_UTR | 25.0% |
| ! | TGGAACTTACATTTCAAATT+TGG | + | chr5_2:11557584-11557603 | Msa0756920:three_prime_UTR | 25.0% |
| ! | TTAATAGCACAATAATGGAG+AGG | - | chr5_2:11552836-11552855 | None:intergenic | 30.0% |
| GGTAGTTAATAGCACAATAA+TGG | - | chr5_2:11552841-11552860 | None:intergenic | 30.0% | |
| CAATGAACAACAAGAATTTC+TGG | - | chr5_2:11553065-11553084 | None:intergenic | 30.0% | |
| ATTAACCTCATTGCTCTTAA+TGG | + | chr5_2:11553126-11553145 | Msa0756920:CDS | 30.0% | |
| CCATCAAATATTCATTTAGC+TGG | - | chr5_2:11553303-11553322 | None:intergenic | 30.0% | |
| CCAGCTAAATGAATATTTGA+TGG | + | chr5_2:11553300-11553319 | Msa0756920:intron | 30.0% | |
| !! | TATTTTCCTTAGTTCTTGAG+TGG | + | chr5_2:11553437-11553456 | Msa0756920:intron | 30.0% |
| ! | TATGGGGTCACTAATTTTAT+CGG | - | chr5_2:11553682-11553701 | None:intergenic | 30.0% |
| !!! | TGACCCCATATTTTTTTTTG+TGG | + | chr5_2:11553692-11553711 | Msa0756920:intron | 30.0% |
| CATTTCTTCATGAAAATAGC+TGG | + | chr5_2:11553981-11554000 | Msa0756920:intron | 30.0% | |
| !!! | TGCAAACTTTTGAAATGGAT+TGG | - | chr5_2:11554318-11554337 | None:intergenic | 30.0% |
| !! | AGCAATGCAAACTTTTGAAA+TGG | - | chr5_2:11554323-11554342 | None:intergenic | 30.0% |
| TTCAAAAGTTTGCATTGCTA+AGG | + | chr5_2:11554324-11554343 | Msa0756920:intron | 30.0% | |
| !! | GAAGTCAAAATCGTTTTAGA+CGG | - | chr5_2:11554961-11554980 | None:intergenic | 30.0% |
| TCAAAATACTTGTCTTGCAT+TGG | + | chr5_2:11555040-11555059 | Msa0756920:CDS | 30.0% | |
| TACTATCAAATATGACTGGA+AGG | + | chr5_2:11555180-11555199 | Msa0756920:CDS | 30.0% | |
| CTTTCTTTCTTTCTTACAGA+TGG | + | chr5_2:11555300-11555319 | Msa0756920:intron | 30.0% | |
| GGATAGTATATAGATAGAGT+TGG | - | chr5_2:11555375-11555394 | None:intergenic | 30.0% | |
| ACTCTATCTATATACTATCC+TGG | + | chr5_2:11555375-11555394 | Msa0756920:intron | 30.0% | |
| ! | CCATTCTTATATTTAAGACC+AGG | - | chr5_2:11555396-11555415 | None:intergenic | 30.0% |
| !! | CCTGGTCTTAAATATAAGAA+TGG | + | chr5_2:11555393-11555412 | Msa0756920:intron | 30.0% |
| !! | TAGCTTTTTAGATAGTGGTT+AGG | + | chr5_2:11555859-11555878 | Msa0756920:intron | 30.0% |
| CTTGATATTCTGCATATGTT+AGG | - | chr5_2:11556015-11556034 | None:intergenic | 30.0% | |
| AACCCAAGTCTTGATATTAT+TGG | + | chr5_2:11556045-11556064 | Msa0756920:CDS | 30.0% | |
| GTCCAATAATATCAAGACTT+GGG | - | chr5_2:11556050-11556069 | None:intergenic | 30.0% | |
| TGTCCAATAATATCAAGACT+TGG | - | chr5_2:11556051-11556070 | None:intergenic | 30.0% | |
| ATACCAAGAGATATCAAGAT+CGG | - | chr5_2:11556146-11556165 | None:intergenic | 30.0% | |
| ATCTTGATATCTCTTGGTAT+GGG | + | chr5_2:11556146-11556165 | Msa0756920:CDS | 30.0% | |
| ! | CAAATTCTTTTGTAGTCCTA+GGG | - | chr5_2:11556212-11556231 | None:intergenic | 30.0% |
| CTAGGACTACAAAAGAATTT+GGG | + | chr5_2:11556211-11556230 | Msa0756920:CDS | 30.0% | |
| TCATCTCTTTCAATCTCTTT+AGG | - | chr5_2:11556241-11556260 | None:intergenic | 30.0% | |
| AATAACATAATAGGCTAGTG+GGG | - | chr5_2:11556272-11556291 | None:intergenic | 30.0% | |
| CTAATAACATAATAGGCTAG+TGG | - | chr5_2:11556274-11556293 | None:intergenic | 30.0% | |
| ! | CACTAGCCTATTATGTTATT+AGG | + | chr5_2:11556272-11556291 | Msa0756920:CDS | 30.0% |
| TATAATTACGGGTCATAGTT+TGG | + | chr5_2:11556339-11556358 | Msa0756920:CDS | 30.0% | |
| ATAATTACGGGTCATAGTTT+GGG | + | chr5_2:11556340-11556359 | Msa0756920:CDS | 30.0% | |
| ! | ATGAGAAATTGTTGATTGAG+AGG | + | chr5_2:11556407-11556426 | Msa0756920:CDS | 30.0% |
| GCAATAAACAAACCTACAAT+AGG | - | chr5_2:11556524-11556543 | None:intergenic | 30.0% | |
| ATATGCTCTTCAAACACTTT+GGG | + | chr5_2:11556581-11556600 | Msa0756920:CDS | 30.0% | |
| ! | GTTTGACTTAATCTGATTTG+AGG | + | chr5_2:11556689-11556708 | Msa0756920:intron | 30.0% |
| CAAACATTATCTAGCTGAAA+GGG | - | chr5_2:11556780-11556799 | None:intergenic | 30.0% | |
| ACAAACATTATCTAGCTGAA+AGG | - | chr5_2:11556781-11556800 | None:intergenic | 30.0% | |
| TTCAGCTAGATAATGTTTGT+CGG | + | chr5_2:11556781-11556800 | Msa0756920:intron | 30.0% | |
| GGTGAAAAATAGTTCTTGTT+GGG | - | chr5_2:11556935-11556954 | None:intergenic | 30.0% | |
| AGGTGAAAAATAGTTCTTGT+TGG | - | chr5_2:11556936-11556955 | None:intergenic | 30.0% | |
| !! | ACAAGAACTATTTTTCACCT+TGG | + | chr5_2:11556936-11556955 | Msa0756920:CDS | 30.0% |
| CAGTATGGCATTAAATATCA+TGG | - | chr5_2:11556972-11556991 | None:intergenic | 30.0% | |
| CATGATATTTAATGCCATAC+TGG | + | chr5_2:11556970-11556989 | Msa0756920:CDS | 30.0% | |
| TTTACCATTGCCTATAGAAA+TGG | + | chr5_2:11557007-11557026 | Msa0756920:CDS | 30.0% | |
| !!! | GTTTCTCTTCTTTTTTAGGA+TGG | + | chr5_2:11557051-11557070 | Msa0756920:CDS | 30.0% |
| ! | TTTGAAACCTTCATTTCACT+TGG | - | chr5_2:11557511-11557530 | None:intergenic | 30.0% |
| !!! | AAAACATCGATTCACTTTTG+TGG | - | chr5_2:11557613-11557632 | None:intergenic | 30.0% |
| AAGACATGTGTTATGACTTA+TGG | - | chr5_2:11557676-11557695 | None:intergenic | 30.0% | |
| CTATTAACTACCTTAAGCCA+TGG | + | chr5_2:11552849-11552868 | Msa0756920:exon | 35.0% | |
| !!! | ATTTTATTTTCCCGGGACAT+AGG | + | chr5_2:11552952-11552971 | Msa0756920:CDS | 35.0% |
| !!! | TTTTATTTTCCCGGGACATA+GGG | + | chr5_2:11552953-11552972 | Msa0756920:CDS | 35.0% |
| TTTGTGGATAGTAATGCTGA+AGG | + | chr5_2:11552985-11553004 | Msa0756920:CDS | 35.0% | |
| ! | ACTTGCCAAGATTGGTTATT+GGG | + | chr5_2:11553092-11553111 | Msa0756920:CDS | 35.0% |
| ! | TTGAGTCTTTTACAAGTGTC+TGG | + | chr5_2:11553385-11553404 | Msa0756920:intron | 35.0% |
| ! | TCTTTTACAAGTGTCTGGTT+TGG | + | chr5_2:11553390-11553409 | Msa0756920:intron | 35.0% |
| AAGATCTGACCAATACACAT+GGG | - | chr5_2:11553472-11553491 | None:intergenic | 35.0% | |
| ! | TCACTAATTTTATCGGGACA+AGG | - | chr5_2:11553675-11553694 | None:intergenic | 35.0% |
| ! | ATGGGGTCACTAATTTTATC+GGG | - | chr5_2:11553681-11553700 | None:intergenic | 35.0% |
| ! | ATTTTTATTGTCGCATCGCA+TGG | - | chr5_2:11553919-11553938 | None:intergenic | 35.0% |
| ACGTAAACTTAAATGTGTGC+CGG | - | chr5_2:11554042-11554061 | None:intergenic | 35.0% | |
| ! | AAACAAGCTTTTGTGCATGA+TGG | - | chr5_2:11554116-11554135 | None:intergenic | 35.0% |
| CTTGTCTTGCATTGGAAATT+TGG | + | chr5_2:11555048-11555067 | Msa0756920:CDS | 35.0% | |
| TTTCTTACAGATGGAGTATG+TGG | + | chr5_2:11555309-11555328 | Msa0756920:intron | 35.0% | |
| TTCTTACAGATGGAGTATGT+GGG | + | chr5_2:11555310-11555329 | Msa0756920:intron | 35.0% | |
| ! | TAATATCAAGACTTGGGTTG+TGG | - | chr5_2:11556044-11556063 | None:intergenic | 35.0% |
| GATCTTGATATCTCTTGGTA+TGG | + | chr5_2:11556145-11556164 | Msa0756920:CDS | 35.0% | |
| ! | CCAAATTCTTTTGTAGTCCT+AGG | - | chr5_2:11556213-11556232 | None:intergenic | 35.0% |
| CCTAGGACTACAAAAGAATT+TGG | + | chr5_2:11556210-11556229 | Msa0756920:CDS | 35.0% | |
| GACTACAAAAGAATTTGGGT+TGG | + | chr5_2:11556215-11556234 | Msa0756920:CDS | 35.0% | |
| ! | GAAATTGTTGATTGAGAGGT+TGG | + | chr5_2:11556411-11556430 | Msa0756920:CDS | 35.0% |
| TTGGAAGGGATTTACACATT+TGG | + | chr5_2:11556430-11556449 | Msa0756920:CDS | 35.0% | |
| AGCATATCCTTATCATCGTA+GGG | - | chr5_2:11556568-11556587 | None:intergenic | 35.0% | |
| GATATGCTCTTCAAACACTT+TGG | + | chr5_2:11556580-11556599 | Msa0756920:CDS | 35.0% | |
| ! | GGATCTGCCTTTTCTTTAAT+AGG | + | chr5_2:11556602-11556621 | Msa0756920:CDS | 35.0% |
| CATAGCGCCTATTAAAGAAA+AGG | - | chr5_2:11556612-11556631 | None:intergenic | 35.0% | |
| ATCAGATTAAGTCAAACGGA+GGG | - | chr5_2:11556686-11556705 | None:intergenic | 35.0% | |
| AATCAGATTAAGTCAAACGG+AGG | - | chr5_2:11556687-11556706 | None:intergenic | 35.0% | |
| !!! | GGTGGTTTCTCTTCTTTTTT+AGG | + | chr5_2:11557047-11557066 | Msa0756920:CDS | 35.0% |
| !!! | CTCTTCTTTTTTAGGATGGT+TGG | + | chr5_2:11557055-11557074 | Msa0756920:CDS | 35.0% |
| !! | ATGGTTGGTTTACTAATTCC+AGG | + | chr5_2:11557070-11557089 | Msa0756920:CDS | 35.0% |
| AATGTCTTTCAATGGATCCA+AGG | - | chr5_2:11557138-11557157 | None:intergenic | 35.0% | |
| TGTTCTCTTCTCAAAGAGTT+AGG | + | chr5_2:11557300-11557319 | Msa0756920:three_prime_UTR | 35.0% | |
| ATCGTTTCCAAGTGAAATGA+AGG | + | chr5_2:11557501-11557520 | Msa0756920:three_prime_UTR | 35.0% | |
| GAATGATTTAGGCTTATGAG+GGG | - | chr5_2:11557702-11557721 | None:intergenic | 35.0% | |
| GGAATGATTTAGGCTTATGA+GGG | - | chr5_2:11557703-11557722 | None:intergenic | 35.0% | |
| AGGAATGATTTAGGCTTATG+AGG | - | chr5_2:11557704-11557723 | None:intergenic | 35.0% | |
| ! | AATAATGGAGAGGAGAGGAA+AGG | - | chr5_2:11552826-11552845 | None:intergenic | 40.0% |
| ATGGCTTCTACTTGCGATAA+GGG | + | chr5_2:11552868-11552887 | Msa0756920:CDS | 40.0% | |
| TCAAAGAAATGGGCATCTTC+TGG | - | chr5_2:11552922-11552941 | None:intergenic | 40.0% | |
| CATAGGGCATAGGAAATTTG+TGG | + | chr5_2:11552969-11552988 | Msa0756920:CDS | 40.0% | |
| TAGTAATGCTGAAGGAGATG+TGG | + | chr5_2:11552993-11553012 | Msa0756920:CDS | 40.0% | |
| CAATAACCAATCTTGGCAAG+TGG | - | chr5_2:11553093-11553112 | None:intergenic | 40.0% | |
| ! | CACTTGCCAAGATTGGTTAT+TGG | + | chr5_2:11553091-11553110 | Msa0756920:CDS | 40.0% |
| CTCAACCCAATAACCAATCT+TGG | - | chr5_2:11553100-11553119 | None:intergenic | 40.0% | |
| AACCTCATTGCTCTTAATGG+AGG | + | chr5_2:11553129-11553148 | Msa0756920:CDS | 40.0% | |
| TTCCTCCATTAAGAGCAATG+AGG | - | chr5_2:11553134-11553153 | None:intergenic | 40.0% | |
| AAGACTCAAATTGCCTGCTT+GGG | - | chr5_2:11553374-11553393 | None:intergenic | 40.0% | |
| AAAGACTCAAATTGCCTGCT+TGG | - | chr5_2:11553375-11553394 | None:intergenic | 40.0% | |
| ACCAATACAAGCAACGAAAC+AGG | - | chr5_2:11553416-11553435 | None:intergenic | 40.0% | |
| CAAGATCTGACCAATACACA+TGG | - | chr5_2:11553473-11553492 | None:intergenic | 40.0% | |
| ATAGCTGGCAAAGTAGCATA+AGG | + | chr5_2:11553996-11554015 | Msa0756920:intron | 40.0% | |
| TAGCTGGCAAAGTAGCATAA+GGG | + | chr5_2:11553997-11554016 | Msa0756920:intron | 40.0% | |
| AAGTTTGCATTGCTAAGGTG+AGG | + | chr5_2:11554329-11554348 | Msa0756920:intron | 40.0% | |
| !!! | ATGTGGGATTTTTTGACTGC+TGG | + | chr5_2:11555326-11555345 | Msa0756920:CDS | 40.0% |
| !!! | GGATTTTTTGACTGCTGGAA+TGG | + | chr5_2:11555331-11555350 | Msa0756920:CDS | 40.0% |
| ! | ACTTATGTGGTGGCTTTTAG+AGG | + | chr5_2:11556088-11556107 | Msa0756920:CDS | 40.0% |
| ! | TTGTTGATTGAGAGGTTGGA+AGG | + | chr5_2:11556415-11556434 | Msa0756920:CDS | 40.0% |
| ! | TGTTGATTGAGAGGTTGGAA+GGG | + | chr5_2:11556416-11556435 | Msa0756920:CDS | 40.0% |
| ACATTTGGACAACCAAGAGT+TGG | + | chr5_2:11556445-11556464 | Msa0756920:CDS | 40.0% | |
| TATCTCTCATCTCCAACTCT+TGG | - | chr5_2:11556460-11556479 | None:intergenic | 40.0% | |
| ATTGCAATGACGTTGTTCCA+AGG | + | chr5_2:11556539-11556558 | Msa0756920:CDS | 40.0% | |
| GAGCATATCCTTATCATCGT+AGG | - | chr5_2:11556569-11556588 | None:intergenic | 40.0% | |
| TAATAGGCGCTATGAACTCA+AGG | + | chr5_2:11556618-11556637 | Msa0756920:CDS | 40.0% | |
| GTTCAAATTTCAATCGGGAG+AGG | - | chr5_2:11556729-11556748 | None:intergenic | 40.0% | |
| AGGGTTAGAATCTCATAACG+TGG | - | chr5_2:11556761-11556780 | None:intergenic | 40.0% | |
| ATCATGGGTATTACACACCA+AGG | - | chr5_2:11556956-11556975 | None:intergenic | 40.0% | |
| ATGCCATACTGGAACTCATA+AGG | + | chr5_2:11556981-11557000 | Msa0756920:CDS | 40.0% | |
| AGGTCCATTTCTATAGGCAA+TGG | - | chr5_2:11557014-11557033 | None:intergenic | 40.0% | |
| GTAGTGAGGTCCATTTCTAT+AGG | - | chr5_2:11557020-11557039 | None:intergenic | 40.0% | |
| TCTTCTCAAAGAGTTAGGCA+TGG | + | chr5_2:11557305-11557324 | Msa0756920:three_prime_UTR | 40.0% | |
| GTCAAGACACTCACAACCAT+AGG | + | chr5_2:11552774-11552793 | Msa0756920:five_prime_UTR | 45.0% | |
| ! | AGCACAATAATGGAGAGGAG+AGG | - | chr5_2:11552831-11552850 | None:intergenic | 45.0% |
| CAAGTAGAAGCCATGGCTTA+AGG | - | chr5_2:11552862-11552881 | None:intergenic | 45.0% | |
| CTTATCGCAAGTAGAAGCCA+TGG | - | chr5_2:11552869-11552888 | None:intergenic | 45.0% | |
| CATGGCTTCTACTTGCGATA+AGG | + | chr5_2:11552867-11552886 | Msa0756920:exon | 45.0% | |
| ATTTCCTATGCCCTATGTCC+CGG | - | chr5_2:11552966-11552985 | None:intergenic | 45.0% | |
| TAATGCTGAAGGAGATGTGG+AGG | + | chr5_2:11552996-11553015 | Msa0756920:CDS | 45.0% | |
| AATGCTGAAGGAGATGTGGA+GGG | + | chr5_2:11552997-11553016 | Msa0756920:CDS | 45.0% | |
| AGGGAAGTTTCAGAGGTAGA+TGG | + | chr5_2:11553016-11553035 | Msa0756920:CDS | 45.0% | |
| GCTAAACCACTTGCCAAGAT+TGG | + | chr5_2:11553084-11553103 | Msa0756920:CDS | 45.0% | |
| GCCTGTTTCGTTGCTTGTAT+TGG | + | chr5_2:11553412-11553431 | Msa0756920:intron | 45.0% | |
| GAAGAGCCACTCAAGAACTA+AGG | - | chr5_2:11553446-11553465 | None:intergenic | 45.0% | |
| CTCTTCTGACCCATGTGTAT+TGG | + | chr5_2:11553460-11553479 | Msa0756920:intron | 45.0% | |
| ACTCGTGAGCTTAACTCAGT+TGG | - | chr5_2:11553767-11553786 | None:intergenic | 45.0% | |
| AGCTGGCAAAGTAGCATAAG+GGG | + | chr5_2:11553998-11554017 | Msa0756920:intron | 45.0% | |
| AAGGGGGTCTATATGCATCA+TGG | + | chr5_2:11554015-11554034 | Msa0756920:intron | 45.0% | |
| GGTCTATATGCATCATGGTC+CGG | + | chr5_2:11554020-11554039 | Msa0756920:intron | 45.0% | |
| TAAGGACCGTGACACTTATG+TGG | + | chr5_2:11556075-11556094 | Msa0756920:CDS | 45.0% | |
| AAGCCACCACATAAGTGTCA+CGG | - | chr5_2:11556084-11556103 | None:intergenic | 45.0% | |
| AACCCTTTGATGCAGATGCA+TGG | + | chr5_2:11556116-11556135 | Msa0756920:CDS | 45.0% | |
| CACCATGCATCTGCATCAAA+GGG | - | chr5_2:11556121-11556140 | None:intergenic | 45.0% | |
| ! | GCACCGATCTTGATATCTCT+TGG | + | chr5_2:11556140-11556159 | Msa0756920:CDS | 45.0% |
| ATCTCTTGGTATGGGATTCC+CGG | + | chr5_2:11556154-11556173 | Msa0756920:CDS | 45.0% | |
| ATTACGGGTCATAGTTTGGG+TGG | + | chr5_2:11556343-11556362 | Msa0756920:CDS | 45.0% | |
| TTATCATCGTAGGGCAACCT+TGG | - | chr5_2:11556559-11556578 | None:intergenic | 45.0% | |
| AAGGTTGCCCTACGATGATA+AGG | + | chr5_2:11556558-11556577 | Msa0756920:CDS | 45.0% | |
| GCTCCTTATGAGTTCCAGTA+TGG | - | chr5_2:11556987-11557006 | None:intergenic | 45.0% | |
| AATGGACCTCACTACAGAGA+AGG | + | chr5_2:11557025-11557044 | Msa0756920:CDS | 45.0% | |
| ATGGACCTCACTACAGAGAA+GGG | + | chr5_2:11557026-11557045 | Msa0756920:CDS | 45.0% | |
| ATTCCAGGATTACCTGCTCA+TGG | + | chr5_2:11557085-11557104 | Msa0756920:CDS | 45.0% | |
| TGATTTAGGCTTATGAGGGG+AGG | - | chr5_2:11557699-11557718 | None:intergenic | 45.0% | |
| !!! | AATTTTTCTTAATTTTTTAA+AGG | - | chr5_2:11554502-11554521 | None:intergenic | 5.0% |
| !!! | TTATAAAATAATTTTTAAGA+AGG | + | chr5_2:11554784-11554803 | Msa0756920:intron | 5.0% |
| !!! | TAAAAAATATTTTCATAAAA+AGG | - | chr5_2:11555587-11555606 | None:intergenic | 5.0% |
| TTTCCTATGCCCTATGTCCC+GGG | - | chr5_2:11552965-11552984 | None:intergenic | 50.0% | |
| GATGTGGAGGGAAGTTTCAG+AGG | + | chr5_2:11553009-11553028 | Msa0756920:CDS | 50.0% | |
| ATCAGATCTCAGTCCCAAGC+AGG | + | chr5_2:11553358-11553377 | Msa0756920:intron | 50.0% | |
| AGTTAAGCTCACGAGTCACG+AGG | + | chr5_2:11553771-11553790 | Msa0756920:intron | 50.0% | |
| TGTCGCATCGCATGGACATA+GGG | - | chr5_2:11553911-11553930 | None:intergenic | 50.0% | |
| TTGTCGCATCGCATGGACAT+AGG | - | chr5_2:11553912-11553931 | None:intergenic | 50.0% | |
| GCTGGCAAAGTAGCATAAGG+GGG | + | chr5_2:11553999-11554018 | Msa0756920:intron | 50.0% | |
| CTTGACGCTTGAGAATGTCG+AGG | - | chr5_2:11555087-11555106 | None:intergenic | 50.0% | |
| GCACCATGCATCTGCATCAA+AGG | - | chr5_2:11556122-11556141 | None:intergenic | 50.0% | |
| ! | GGTGGATTCATGAAAGCCCT+AGG | + | chr5_2:11556193-11556212 | Msa0756920:CDS | 50.0% |
| TCAATCGGGAGAGGTCGTTT+CGG | - | chr5_2:11556720-11556739 | None:intergenic | 50.0% | |
| AACCACCCTTCTCTGTAGTG+AGG | - | chr5_2:11557034-11557053 | None:intergenic | 50.0% | |
| TAATCTTGGGGACCATGAGC+AGG | - | chr5_2:11557100-11557119 | None:intergenic | 50.0% | |
| TTTCCCGGGACATAGGGCAT+AGG | + | chr5_2:11552959-11552978 | Msa0756920:CDS | 55.0% | |
| GGACCGTGACACTTATGTGG+TGG | + | chr5_2:11556078-11556097 | Msa0756920:CDS | 55.0% | |
| TGGTATGGGATTCCCGGTGT+TGG | + | chr5_2:11556160-11556179 | Msa0756920:CDS | 55.0% | |
| ACCGTGTGCTCTTCCAACAC+CGG | - | chr5_2:11556176-11556195 | None:intergenic | 55.0% | |
| GACCTCACTACAGAGAAGGG+TGG | + | chr5_2:11557029-11557048 | Msa0756920:CDS | 55.0% | |
| GGACCATGAGCAGGTAATCC+TGG | - | chr5_2:11557091-11557110 | None:intergenic | 55.0% | |
| CGCATCGCATGGACATAGGG+TGG | - | chr5_2:11553908-11553927 | None:intergenic | 60.0% | |
| CCGTGTGCTCTTCCAACACC+GGG | - | chr5_2:11556175-11556194 | None:intergenic | 60.0% | |
| ! | CCCGGTGTTGGAAGAGCACA+CGG | + | chr5_2:11556172-11556191 | Msa0756920:CDS | 60.0% |
| ! | GGTGTTGGAAGAGCACACGG+TGG | + | chr5_2:11556175-11556194 | Msa0756920:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 11552767 | 11557724 | 11552767 | ID=Msa0756920;Name=Msa0756920 |
| chr5_2 | mRNA | 11552767 | 11557724 | 11552767 | ID=Msa0756920-mRNA-1;Parent=Msa0756920;Name=Msa0756920-mRNA-1;_AED=0.07;_eAED=0.07;_QI=101|1|1|1|0.8|0.66|6|453|469 |
| chr5_2 | exon | 11552767 | 11553183 | 11552767 | ID=Msa0756920-mRNA-1:exon:5190;Parent=Msa0756920-mRNA-1 |
| chr5_2 | exon | 11555011 | 11555201 | 11555011 | ID=Msa0756920-mRNA-1:exon:5191;Parent=Msa0756920-mRNA-1 |
| chr5_2 | exon | 11555319 | 11555352 | 11555319 | ID=Msa0756920-mRNA-1:exon:5192;Parent=Msa0756920-mRNA-1 |
| chr5_2 | exon | 11556026 | 11556639 | 11556026 | ID=Msa0756920-mRNA-1:exon:5193;Parent=Msa0756920-mRNA-1 |
| chr5_2 | exon | 11556917 | 11557361 | 11556917 | ID=Msa0756920-mRNA-1:exon:5194;Parent=Msa0756920-mRNA-1 |
| chr5_2 | exon | 11557462 | 11557724 | 11557462 | ID=Msa0756920-mRNA-1:exon:5195;Parent=Msa0756920-mRNA-1 |
| chr5_2 | five_prime_UTR | 11552767 | 11552867 | 11552767 | ID=Msa0756920-mRNA-1:five_prime_utr;Parent=Msa0756920-mRNA-1 |
| chr5_2 | CDS | 11552868 | 11553183 | 11552868 | ID=Msa0756920-mRNA-1:cds;Parent=Msa0756920-mRNA-1 |
| chr5_2 | CDS | 11555011 | 11555201 | 11555011 | ID=Msa0756920-mRNA-1:cds;Parent=Msa0756920-mRNA-1 |
| chr5_2 | CDS | 11555319 | 11555352 | 11555319 | ID=Msa0756920-mRNA-1:cds;Parent=Msa0756920-mRNA-1 |
| chr5_2 | CDS | 11556026 | 11556639 | 11556026 | ID=Msa0756920-mRNA-1:cds;Parent=Msa0756920-mRNA-1 |
| chr5_2 | CDS | 11556917 | 11557171 | 11556917 | ID=Msa0756920-mRNA-1:cds;Parent=Msa0756920-mRNA-1 |
| chr5_2 | three_prime_UTR | 11557172 | 11557361 | 11557172 | ID=Msa0756920-mRNA-1:three_prime_utr;Parent=Msa0756920-mRNA-1 |
| chr5_2 | three_prime_UTR | 11557462 | 11557724 | 11557462 | ID=Msa0756920-mRNA-1:three_prime_utr;Parent=Msa0756920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
