Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346130 | XP_039686389.1 | 74.638 | 138 | 10 | 1 | 162 | 274 | 610 | 747 | 4.82e-55 | 202 |
| Msa0346130 | XP_039686389.1 | 90.588 | 170 | 6 | 2 | 3 | 162 | 1 | 170 | 3.45e-96 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346130 | A0A396J7J0 | 74.638 | 138 | 10 | 1 | 162 | 274 | 579 | 716 | 3.66e-56 | 203 |
| Msa0346130 | A0A396J7J0 | 89.928 | 139 | 4 | 2 | 34 | 162 | 1 | 139 | 1.93e-73 | 249 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0346130 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0346130 | 0.825781 | 3.887078e-54 | -8.615850e-47 |
| Msa0243460 | Msa0346130 | 0.842976 | 1.860593e-58 | -8.615850e-47 |
| Msa0346130 | Msa0776990 | 0.835372 | 1.743507e-56 | -8.615850e-47 |
| Msa0346130 | Msa1035660 | 0.867861 | 1.001213e-65 | -8.615850e-47 |
| Msa0346130 | Msa1035670 | 0.870782 | 1.124458e-66 | -8.615850e-47 |
| Msa0346130 | Msa1165540 | 0.842803 | 2.068543e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346130 | MtrunA17_Chr2g0296781 | 89.928 | 139 | 4 | 2 | 34 | 162 | 1 | 139 | 3.72e-77 | 249 |
| Msa0346130 | MtrunA17_Chr2g0296781 | 74.638 | 138 | 10 | 1 | 162 | 274 | 579 | 716 | 7.04e-60 | 203 |
| Msa0346130 | MtrunA17_Chr6g0476441 | 76.642 | 137 | 7 | 1 | 162 | 273 | 84 | 220 | 8.44e-65 | 206 |
| Msa0346130 | MtrunA17_Chr6g0477261 | 58.247 | 194 | 33 | 4 | 163 | 308 | 469 | 662 | 2.85e-60 | 203 |
| Msa0346130 | MtrunA17_Chr6g0476431 | 86.364 | 88 | 5 | 1 | 34 | 114 | 1 | 88 | 6.40e-47 | 152 |
| Msa0346130 | MtrunA17_Chr3g0077731 | 62.931 | 116 | 16 | 2 | 192 | 280 | 1 | 116 | 6.19e-38 | 130 |
| Msa0346130 | MtrunA17_Chr1g0196541 | 49.640 | 139 | 60 | 2 | 34 | 162 | 1 | 139 | 6.09e-34 | 131 |
| Msa0346130 | MtrunA17_Chr1g0196541 | 43.293 | 164 | 56 | 4 | 164 | 300 | 575 | 728 | 4.89e-25 | 105 |
| Msa0346130 | MtrunA17_Chr6g0451441 | 30.247 | 162 | 97 | 5 | 10 | 157 | 64 | 223 | 5.66e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACACTGCGTTTGAGTTAT+AGG | 0.177962 | 3_1:-6046565 | None:intergenic |
| CCTTTACTTCGAGCTACTTT+AGG | 0.238096 | 3_1:-6048296 | None:intergenic |
| TACTTGTTCTGATTTGTTAC+AGG | 0.246785 | 3_1:+6049233 | Msa0346130:CDS |
| AATGCGTGTATTTATTTAGA+TGG | 0.249459 | 3_1:+6046598 | Msa0346130:CDS |
| TATGCTGAACGGGTGGGTTT+TGG | 0.279098 | 3_1:+6046430 | Msa0346130:CDS |
| AATCAGAACAAGTAGCATTA+TGG | 0.298354 | 3_1:-6049224 | None:intergenic |
| TTAGATCGAACAAGAATATA+GGG | 0.302032 | 3_1:+6046689 | Msa0346130:intron |
| TGCGTTTGAGTTATAGGATT+TGG | 0.304891 | 3_1:-6046559 | None:intergenic |
| CGTTGAAGCAAATTCATAAA+AGG | 0.311900 | 3_1:-6048135 | None:intergenic |
| ATTTGAGTCTATTGATGAAT+TGG | 0.319207 | 3_1:+6046303 | Msa0346130:CDS |
| CAATCTTCTTCTACAATTGT+AGG | 0.328846 | 3_1:-6048242 | None:intergenic |
| AAGGGCATCCTCCTTCTAAA+AGG | 0.337152 | 3_1:+6048315 | Msa0346130:CDS |
| TTTAGATCGAACAAGAATAT+AGG | 0.366556 | 3_1:+6046688 | Msa0346130:intron |
| CTAAAATACCTTGCTTTCCC+TGG | 0.410842 | 3_1:-6046670 | None:intergenic |
| TCTCAACTTGGTGATAGAAT+TGG | 0.438239 | 3_1:+6048569 | Msa0346130:CDS |
| GCAGGCTCCTTATTACTCTC+AGG | 0.438514 | 3_1:+6049194 | Msa0346130:intron |
| CCTTGTGATGGGATGTCATT+CGG | 0.449339 | 3_1:+6046373 | Msa0346130:CDS |
| CATAATCATGATCTAAGTCC+AGG | 0.457184 | 3_1:+6046652 | Msa0346130:CDS |
| CCTAAAGTAGCTCGAAGTAA+AGG | 0.460010 | 3_1:+6048296 | Msa0346130:CDS |
| TTACAAGAATTATGCTGAAC+GGG | 0.461474 | 3_1:+6046420 | Msa0346130:CDS |
| GTAGGAGATGTTTCATTACA+TGG | 0.465504 | 3_1:-6048224 | None:intergenic |
| CTAAAGTAGCTCGAAGTAAA+GGG | 0.475018 | 3_1:+6048297 | Msa0346130:CDS |
| TATAACTCAAACGCAGTGTA+AGG | 0.477984 | 3_1:+6046567 | Msa0346130:CDS |
| AATGATTGTTTAGAAGCAAA+TGG | 0.480295 | 3_1:+6046331 | Msa0346130:CDS |
| TTTATGACCTGAGAGTAATA+AGG | 0.482284 | 3_1:-6049201 | None:intergenic |
| TTTGTTGTATTAGTGCAAGA+AGG | 0.490969 | 3_1:+6046280 | Msa0346130:intron |
| TAGGATCAAGAATGGTAGCT+TGG | 0.494392 | 3_1:-6048277 | None:intergenic |
| GATGTCATTCGGATCTGAAA+AGG | 0.494917 | 3_1:+6046384 | Msa0346130:CDS |
| TCCTTTGTCGTTGAAGCAGA+TGG | 0.513029 | 3_1:+6046778 | Msa0346130:CDS |
| AGCTACTTTAGGATCAAGAA+TGG | 0.514436 | 3_1:-6048285 | None:intergenic |
| CTTGACCTCTAGATGTACAT+TGG | 0.528356 | 3_1:-6048520 | None:intergenic |
| ATCTAAGTCCAGGGAAAGCA+AGG | 0.538270 | 3_1:+6046662 | Msa0346130:CDS |
| AAGAATTATGCTGAACGGGT+GGG | 0.547191 | 3_1:+6046424 | Msa0346130:CDS |
| AGCATAATTCTTGTAATACT+CGG | 0.547475 | 3_1:-6046413 | None:intergenic |
| CAAGAATTATGCTGAACGGG+TGG | 0.555569 | 3_1:+6046423 | Msa0346130:CDS |
| CTGCTTCAACGACAAAGGAT+CGG | 0.586561 | 3_1:-6046774 | None:intergenic |
| ACCATCTGCTTCAACGACAA+AGG | 0.593984 | 3_1:-6046779 | None:intergenic |
| TATTGTGCTGATCTTTCATG+TGG | 0.602890 | 3_1:-6049377 | None:intergenic |
| ATTACAAGAATTATGCTGAA+CGG | 0.604383 | 3_1:+6046419 | Msa0346130:CDS |
| TTAGAACTCAATGATCAAGC+TGG | 0.618622 | 3_1:+6046730 | Msa0346130:CDS |
| AAGAAGAAACACCTTGTGAT+GGG | 0.621474 | 3_1:+6046362 | Msa0346130:CDS |
| ATATAGGGGCACAAATGAAG+AGG | 0.627813 | 3_1:+6046704 | Msa0346130:CDS |
| GAAGAAGAAACACCTTGTGA+TGG | 0.629834 | 3_1:+6046361 | Msa0346130:CDS |
| TAGATCGAACAAGAATATAG+GGG | 0.631587 | 3_1:+6046690 | Msa0346130:intron |
| CCGAATGACATCCCATCACA+AGG | 0.631658 | 3_1:-6046373 | None:intergenic |
| CAGGGCCAATGTACATCTAG+AGG | 0.633528 | 3_1:+6048515 | Msa0346130:intron |
| TAGGGGCACAAATGAAGAGG+AGG | 0.634884 | 3_1:+6046707 | Msa0346130:CDS |
| ATAATCATGATCTAAGTCCA+GGG | 0.638934 | 3_1:+6046653 | Msa0346130:CDS |
| TTTATGAATTTGCTTCAACG+AGG | 0.719121 | 3_1:+6048138 | Msa0346130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAGTTCAAAAAA+AGG | + | chr3_1:6046457-6046476 | Msa0346130:CDS | 10.0% |
| !! | ATAGTATTTATTGATATTAT+AGG | + | chr3_1:6048452-6048471 | Msa0346130:intron | 10.0% |
| !! | TCATTTAATTAAAAAATGAT+TGG | + | chr3_1:6048919-6048938 | Msa0346130:intron | 10.0% |
| !! | TAAATGAAAAATCAATCAAT+CGG | - | chr3_1:6046219-6046238 | None:intergenic | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | - | chr3_1:6047049-6047068 | None:intergenic | 15.0% |
| !! | ATTGAAAGATAAAATTGAAA+AGG | + | chr3_1:6047632-6047651 | Msa0346130:intron | 15.0% |
| !!! | CTTGAATATTTTTACTATTT+TGG | - | chr3_1:6048406-6048425 | None:intergenic | 15.0% |
| !!! | GTCTAATTTAAGAATTTTTA+TGG | + | chr3_1:6048492-6048511 | Msa0346130:intron | 15.0% |
| !!! | ATTTTTATAATGAACATAAG+TGG | + | chr3_1:6049154-6049173 | Msa0346130:intron | 15.0% |
| !! | CTGTGTTAGTTAATTAATAT+AGG | + | chr3_1:6046244-6046263 | Msa0346130:intron | 20.0% |
| !!! | CAATACAAAAATATTTTGTG+AGG | + | chr3_1:6046890-6046909 | Msa0346130:intron | 20.0% |
| !!! | TAAATGTGGTTTTGATAATT+TGG | + | chr3_1:6048070-6048089 | Msa0346130:intron | 20.0% |
| !!! | AATTTAAGAATTTTTATGGC+AGG | + | chr3_1:6048496-6048515 | Msa0346130:intron | 20.0% |
| !!! | ATTTAAGAATTTTTATGGCA+GGG | + | chr3_1:6048497-6048516 | Msa0346130:intron | 20.0% |
| !!! | ATTATAGTTTTTTCTATGAC+AGG | + | chr3_1:6048784-6048803 | Msa0346130:intron | 20.0% |
| !!! | TTATAGTTTTTTCTATGACA+GGG | + | chr3_1:6048785-6048804 | Msa0346130:intron | 20.0% |
| !! | TTAGGTATCAAATTATTGAT+GGG | + | chr3_1:6048852-6048871 | Msa0346130:intron | 20.0% |
| !! | TTAAATGAAAGTAAGAAATC+AGG | - | chr3_1:6048907-6048926 | None:intergenic | 20.0% |
| !! | GTTAATTATATATTCTTTGC+AGG | + | chr3_1:6049176-6049195 | Msa0346130:intron | 20.0% |
| ! | ATTTGAGTCTATTGATGAAT+TGG | + | chr3_1:6046303-6046322 | Msa0346130:CDS | 25.0% |
| ! | AATGATTGTTTAGAAGCAAA+TGG | + | chr3_1:6046331-6046350 | Msa0346130:CDS | 25.0% |
| ! | AGCATAATTCTTGTAATACT+CGG | - | chr3_1:6046416-6046435 | None:intergenic | 25.0% |
| ! | ATTACAAGAATTATGCTGAA+CGG | + | chr3_1:6046419-6046438 | Msa0346130:CDS | 25.0% |
| ! | AATGCGTGTATTTATTTAGA+TGG | + | chr3_1:6046598-6046617 | Msa0346130:CDS | 25.0% |
| ! | TTTAGATCGAACAAGAATAT+AGG | + | chr3_1:6046688-6046707 | Msa0346130:intron | 25.0% |
| ! | TTAGATCGAACAAGAATATA+GGG | + | chr3_1:6046689-6046708 | Msa0346130:intron | 25.0% |
| !! | CAGTCAATTTTATTATGTGA+TGG | + | chr3_1:6046927-6046946 | Msa0346130:intron | 25.0% |
| !!! | ATTTTATTATGTGATGGATG+TGG | + | chr3_1:6046933-6046952 | Msa0346130:intron | 25.0% |
| !! | TTACTTGGTTATTTAAGACA+TGG | + | chr3_1:6047163-6047182 | Msa0346130:intron | 25.0% |
| ! | AAAAAGATTCCAGAAAAGTT+TGG | + | chr3_1:6047309-6047328 | Msa0346130:intron | 25.0% |
| ! | ATTTCTTGTATTAGTCACTT+TGG | + | chr3_1:6047690-6047709 | Msa0346130:intron | 25.0% |
| !!! | TGGTAAATGCTTTTTGAAAT+TGG | - | chr3_1:6047725-6047744 | None:intergenic | 25.0% |
| ! | ATTTACCAATGCAAAGTTTA+AGG | + | chr3_1:6047737-6047756 | Msa0346130:intron | 25.0% |
| ! | AAAGTTTAAGGAATTCCAAT+TGG | + | chr3_1:6047749-6047768 | Msa0346130:intron | 25.0% |
| ! | GATGAAAGATATTATGTTCA+TGG | + | chr3_1:6047869-6047888 | Msa0346130:intron | 25.0% |
| !!! | CATCTAATTATATTTTGGCA+CGG | + | chr3_1:6048012-6048031 | Msa0346130:intron | 25.0% |
| ! | AGGTATACACTTATTAAATG+TGG | + | chr3_1:6048056-6048075 | Msa0346130:intron | 25.0% |
| !! | AAATATTCAAGTTCAAGAAG+AGG | + | chr3_1:6048415-6048434 | Msa0346130:intron | 25.0% |
| ! | ATATAACCATTCAACCATTT+AGG | - | chr3_1:6048709-6048728 | None:intergenic | 25.0% |
| ! | CTTAGGTATCAAATTATTGA+TGG | + | chr3_1:6048851-6048870 | Msa0346130:intron | 25.0% |
| !! | AATCCAAATCAAGAACATTT+TGG | + | chr3_1:6049076-6049095 | Msa0346130:intron | 25.0% |
| ! | TGTATGAAAATACAATCTGT+TGG | + | chr3_1:6049278-6049297 | Msa0346130:intron | 25.0% |
| ! | TTTGTTGTATTAGTGCAAGA+AGG | + | chr3_1:6046280-6046299 | Msa0346130:intron | 30.0% |
| TTACAAGAATTATGCTGAAC+GGG | + | chr3_1:6046420-6046439 | Msa0346130:CDS | 30.0% | |
| AAGTTCAAAAAAAGGAGATG+AGG | + | chr3_1:6046465-6046484 | Msa0346130:CDS | 30.0% | |
| AGTTCAAAAAAAGGAGATGA+GGG | + | chr3_1:6046466-6046485 | Msa0346130:CDS | 30.0% | |
| ATAATCATGATCTAAGTCCA+GGG | + | chr3_1:6046653-6046672 | Msa0346130:CDS | 30.0% | |
| TAGATCGAACAAGAATATAG+GGG | + | chr3_1:6046690-6046709 | Msa0346130:intron | 30.0% | |
| GGTTATGAAAATCTCACATT+TGG | + | chr3_1:6046799-6046818 | Msa0346130:intron | 30.0% | |
| ! | AGGGTTGCATATGAATATTT+TGG | + | chr3_1:6047003-6047022 | Msa0346130:intron | 30.0% |
| TGATGATTTACTCCAACAAA+AGG | - | chr3_1:6047087-6047106 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+CGG | + | chr3_1:6047087-6047106 | Msa0346130:intron | 30.0% | |
| ! | AGGATACTGAAACTTTTACT+TGG | + | chr3_1:6047148-6047167 | Msa0346130:intron | 30.0% |
| ! | TTGGTTATTTAAGACATGGT+TGG | + | chr3_1:6047167-6047186 | Msa0346130:intron | 30.0% |
| ! | ACAAACTACATGATAACGAA+TGG | + | chr3_1:6047439-6047458 | Msa0346130:intron | 30.0% |
| ! | ATATGTAAGGGACACATTTT+GGG | + | chr3_1:6047503-6047522 | Msa0346130:intron | 30.0% |
| !!! | AGTATGAACTCGTTTTTTGA+TGG | + | chr3_1:6047555-6047574 | Msa0346130:intron | 30.0% |
| GAATTCCTTAAACTTTGCAT+TGG | - | chr3_1:6047745-6047764 | None:intergenic | 30.0% | |
| ! | TCATAGAAGCTATTTCCAAT+TGG | - | chr3_1:6047767-6047786 | None:intergenic | 30.0% |
| TTTAAATTCAAACAAGCAGC+AGG | - | chr3_1:6047931-6047950 | None:intergenic | 30.0% | |
| ! | TGCTGCTTGTTTGAATTTAA+AGG | + | chr3_1:6047930-6047949 | Msa0346130:intron | 30.0% |
| ! | CGTGCCATCTAATTATATTT+TGG | + | chr3_1:6048007-6048026 | Msa0346130:intron | 30.0% |
| CGTGCCAAAATATAATTAGA+TGG | - | chr3_1:6048014-6048033 | None:intergenic | 30.0% | |
| CGTTGAAGCAAATTCATAAA+AGG | - | chr3_1:6048138-6048157 | None:intergenic | 30.0% | |
| ! | TTTATGAATTTGCTTCAACG+AGG | + | chr3_1:6048138-6048157 | Msa0346130:CDS | 30.0% |
| CAATCTTCTTCTACAATTGT+AGG | - | chr3_1:6048245-6048264 | None:intergenic | 30.0% | |
| ! | ATAGAAGTCTTCCTTTTAGA+AGG | - | chr3_1:6048329-6048348 | None:intergenic | 30.0% |
| ATATACTAGTCATGCAAATC+AGG | + | chr3_1:6048622-6048641 | Msa0346130:intron | 30.0% | |
| GGTGCAAATATAAGATTCAT+TGG | + | chr3_1:6048643-6048662 | Msa0346130:intron | 30.0% | |
| CTACAAATGAAGAGTTTCTT+AGG | + | chr3_1:6048834-6048853 | Msa0346130:intron | 30.0% | |
| TATCAAATTATTGATGGGAC+TGG | + | chr3_1:6048857-6048876 | Msa0346130:intron | 30.0% | |
| ATCAAATTATTGATGGGACT+GGG | + | chr3_1:6048858-6048877 | Msa0346130:intron | 30.0% | |
| TGCATGTTAATATCTATACC+AGG | + | chr3_1:6048997-6049016 | Msa0346130:intron | 30.0% | |
| TATGTTTGTAGCAGTGAAAA+TGG | + | chr3_1:6049028-6049047 | Msa0346130:intron | 30.0% | |
| TGACCAAAATGTTCTTGATT+TGG | - | chr3_1:6049082-6049101 | None:intergenic | 30.0% | |
| !! | ACATTTTGGTCAAGTAAACA+AGG | + | chr3_1:6049090-6049109 | Msa0346130:intron | 30.0% |
| ! | CAAGGTGCAAATATAGATTT+TGG | + | chr3_1:6049108-6049127 | Msa0346130:intron | 30.0% |
| TTTATGACCTGAGAGTAATA+AGG | - | chr3_1:6049204-6049223 | None:intergenic | 30.0% | |
| AATCAGAACAAGTAGCATTA+TGG | - | chr3_1:6049227-6049246 | None:intergenic | 30.0% | |
| !! | TACTTGTTCTGATTTGTTAC+AGG | + | chr3_1:6049233-6049252 | Msa0346130:CDS | 30.0% |
| !!! | TCTGTTGGTTTTTTATTGTG+TGG | + | chr3_1:6049293-6049312 | Msa0346130:intron | 30.0% |
| !!! | CTGTTGGTTTTTTATTGTGT+GGG | + | chr3_1:6049294-6049313 | Msa0346130:intron | 30.0% |
| ! | TAATCCCTTTCTCTTTTTCT+AGG | + | chr3_1:6049347-6049366 | Msa0346130:intron | 30.0% |
| TGTTCCTAGAAAAAGAGAAA+GGG | - | chr3_1:6049354-6049373 | None:intergenic | 30.0% | |
| TTGTTCCTAGAAAAAGAGAA+AGG | - | chr3_1:6049355-6049374 | None:intergenic | 30.0% | |
| AAGAAGAAACACCTTGTGAT+GGG | + | chr3_1:6046362-6046381 | Msa0346130:CDS | 35.0% | |
| GTTCAAAAAAAGGAGATGAG+GGG | + | chr3_1:6046467-6046486 | Msa0346130:CDS | 35.0% | |
| ! | TGCGTTTGAGTTATAGGATT+TGG | - | chr3_1:6046562-6046581 | None:intergenic | 35.0% |
| ! | TTACACTGCGTTTGAGTTAT+AGG | - | chr3_1:6046568-6046587 | None:intergenic | 35.0% |
| TATAACTCAAACGCAGTGTA+AGG | + | chr3_1:6046567-6046586 | Msa0346130:CDS | 35.0% | |
| CATAATCATGATCTAAGTCC+AGG | + | chr3_1:6046652-6046671 | Msa0346130:CDS | 35.0% | |
| TTAGAACTCAATGATCAAGC+TGG | + | chr3_1:6046730-6046749 | Msa0346130:CDS | 35.0% | |
| ! | TCGGTTACGAAATGTGTTTT+GGG | + | chr3_1:6046966-6046985 | Msa0346130:intron | 35.0% |
| TGATCAGTGATTATGGCATT+TGG | - | chr3_1:6047213-6047232 | None:intergenic | 35.0% | |
| TCTGTCTTGATCAGTGATTA+TGG | - | chr3_1:6047220-6047239 | None:intergenic | 35.0% | |
| ! | CCTCGTCATAAAATCACTTT+TGG | - | chr3_1:6047397-6047416 | None:intergenic | 35.0% |
| ! | CCAAAAGTGATTTTATGACG+AGG | + | chr3_1:6047394-6047413 | Msa0346130:intron | 35.0% |
| ! | AAAGTGATTTTATGACGAGG+TGG | + | chr3_1:6047397-6047416 | Msa0346130:intron | 35.0% |
| ! | AAGTGATTTTATGACGAGGT+GGG | + | chr3_1:6047398-6047417 | Msa0346130:intron | 35.0% |
| ! | ATGATAACGAATGGCTGAAA+GGG | + | chr3_1:6047448-6047467 | Msa0346130:intron | 35.0% |
| ! | CATATGTAAGGGACACATTT+TGG | + | chr3_1:6047502-6047521 | Msa0346130:intron | 35.0% |
| TCATGCATGTTTCAACAGAT+TGG | + | chr3_1:6047794-6047813 | Msa0346130:intron | 35.0% | |
| TTTGTGTGCTTAAGCTCATA+GGG | + | chr3_1:6047973-6047992 | Msa0346130:intron | 35.0% | |
| !!! | CTAATTATATTTTGGCACGG+TGG | + | chr3_1:6048015-6048034 | Msa0346130:intron | 35.0% |
| !!! | TGTGGTTTTGATAATTTGGC+TGG | + | chr3_1:6048074-6048093 | Msa0346130:intron | 35.0% |
| AAAACTGAATTGCAACGTGT+AGG | + | chr3_1:6048098-6048117 | Msa0346130:intron | 35.0% | |
| GTAGGAGATGTTTCATTACA+TGG | - | chr3_1:6048227-6048246 | None:intergenic | 35.0% | |
| !! | AGCTACTTTAGGATCAAGAA+TGG | - | chr3_1:6048288-6048307 | None:intergenic | 35.0% |
| CTAAAGTAGCTCGAAGTAAA+GGG | + | chr3_1:6048297-6048316 | Msa0346130:CDS | 35.0% | |
| ! | GTGTTTTACAGATCTCAACT+TGG | + | chr3_1:6048557-6048576 | Msa0346130:CDS | 35.0% |
| ! | TCTCAACTTGGTGATAGAAT+TGG | + | chr3_1:6048569-6048588 | Msa0346130:CDS | 35.0% |
| AGTGTGAACATAGTCCTAAA+TGG | + | chr3_1:6048692-6048711 | Msa0346130:intron | 35.0% | |
| CATAGTCCTAAATGGTTGAA+TGG | + | chr3_1:6048700-6048719 | Msa0346130:intron | 35.0% | |
| ! | TATTGTGCTGATCTTTCATG+TGG | - | chr3_1:6049380-6049399 | None:intergenic | 35.0% |
| GAAGAAGAAACACCTTGTGA+TGG | + | chr3_1:6046361-6046380 | Msa0346130:CDS | 40.0% | |
| GATGTCATTCGGATCTGAAA+AGG | + | chr3_1:6046384-6046403 | Msa0346130:CDS | 40.0% | |
| AAGAATTATGCTGAACGGGT+GGG | + | chr3_1:6046424-6046443 | Msa0346130:CDS | 40.0% | |
| CTAAAATACCTTGCTTTCCC+TGG | - | chr3_1:6046673-6046692 | None:intergenic | 40.0% | |
| ! | ATATAGGGGCACAAATGAAG+AGG | + | chr3_1:6046704-6046723 | Msa0346130:CDS | 40.0% |
| TGGATGTGGATGATGAAAGT+CGG | + | chr3_1:6046947-6046966 | Msa0346130:intron | 40.0% | |
| ! | GTCGGTTACGAAATGTGTTT+TGG | + | chr3_1:6046965-6046984 | Msa0346130:intron | 40.0% |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | + | chr3_1:6047072-6047091 | Msa0346130:intron | 40.0% |
| ACTCCAACAAAAGGAGCAAA+AGG | - | chr3_1:6047078-6047097 | None:intergenic | 40.0% | |
| TTGTGCTCTGTTGTCAAATG+AGG | + | chr3_1:6047128-6047147 | Msa0346130:intron | 40.0% | |
| ACATGGTTGGAATGTATGCA+TGG | + | chr3_1:6047180-6047199 | Msa0346130:intron | 40.0% | |
| ! | CATGATAACGAATGGCTGAA+AGG | + | chr3_1:6047447-6047466 | Msa0346130:intron | 40.0% |
| ! | TATTTGTTGAGCGACATCGT+TGG | + | chr3_1:6047472-6047491 | Msa0346130:intron | 40.0% |
| ! | ATTTGTTGAGCGACATCGTT+GGG | + | chr3_1:6047473-6047492 | Msa0346130:intron | 40.0% |
| ATGTGTCCCTTACATATGCA+GGG | - | chr3_1:6047500-6047519 | None:intergenic | 40.0% | |
| AATGTGTCCCTTACATATGC+AGG | - | chr3_1:6047501-6047520 | None:intergenic | 40.0% | |
| TGCATGTTTCAACAGATTGG+AGG | + | chr3_1:6047797-6047816 | Msa0346130:intron | 40.0% | |
| GCATGTTTCAACAGATTGGA+GGG | + | chr3_1:6047798-6047817 | Msa0346130:intron | 40.0% | |
| TTTCAACAGATTGGAGGGTT+TGG | + | chr3_1:6047803-6047822 | Msa0346130:intron | 40.0% | |
| CTATGAGCTTAAGCACACAA+AGG | - | chr3_1:6047974-6047993 | None:intergenic | 40.0% | |
| CTTTGTGTGCTTAAGCTCAT+AGG | + | chr3_1:6047972-6047991 | Msa0346130:intron | 40.0% | |
| !!! | ATTATATTTTGGCACGGTGG+AGG | + | chr3_1:6048018-6048037 | Msa0346130:intron | 40.0% |
| TAGGATCAAGAATGGTAGCT+TGG | - | chr3_1:6048280-6048299 | None:intergenic | 40.0% | |
| ! | CCTTTACTTCGAGCTACTTT+AGG | - | chr3_1:6048299-6048318 | None:intergenic | 40.0% |
| CCTAAAGTAGCTCGAAGTAA+AGG | + | chr3_1:6048296-6048315 | Msa0346130:CDS | 40.0% | |
| !! | GAAGTCTTCCTTTTAGAAGG+AGG | - | chr3_1:6048326-6048345 | None:intergenic | 40.0% |
| CTTGACCTCTAGATGTACAT+TGG | - | chr3_1:6048523-6048542 | None:intergenic | 40.0% | |
| ! | TACAAACATAGTTCTGCTCC+TGG | - | chr3_1:6049018-6049037 | None:intergenic | 40.0% |
| ! | CCTTGTGATGGGATGTCATT+CGG | + | chr3_1:6046373-6046392 | Msa0346130:CDS | 45.0% |
| CAAGAATTATGCTGAACGGG+TGG | + | chr3_1:6046423-6046442 | Msa0346130:CDS | 45.0% | |
| ATCTAAGTCCAGGGAAAGCA+AGG | + | chr3_1:6046662-6046681 | Msa0346130:CDS | 45.0% | |
| CTGCTTCAACGACAAAGGAT+CGG | - | chr3_1:6046777-6046796 | None:intergenic | 45.0% | |
| TCCTTTGTCGTTGAAGCAGA+TGG | + | chr3_1:6046778-6046797 | Msa0346130:CDS | 45.0% | |
| ACCATCTGCTTCAACGACAA+AGG | - | chr3_1:6046782-6046801 | None:intergenic | 45.0% | |
| AAAGCAAGACGACTACGACT+TGG | + | chr3_1:6046850-6046869 | Msa0346130:intron | 45.0% | |
| AAGCAAGACGACTACGACTT+GGG | + | chr3_1:6046851-6046870 | Msa0346130:intron | 45.0% | |
| TTTGGGCAGATGCAAGATGT+AGG | + | chr3_1:6046983-6047002 | Msa0346130:intron | 45.0% | |
| TTGGGCAGATGCAAGATGTA+GGG | + | chr3_1:6046984-6047003 | Msa0346130:intron | 45.0% | |
| TCACGGTCAGTCTATGTTGT+TGG | + | chr3_1:6047104-6047123 | Msa0346130:intron | 45.0% | |
| CACGGTCAGTCTATGTTGTT+GGG | + | chr3_1:6047105-6047124 | Msa0346130:intron | 45.0% | |
| TCTTTCCGAAAGCTCGTCAT+CGG | + | chr3_1:6047265-6047284 | Msa0346130:intron | 45.0% | |
| ! | GAGTGGCTACCAAACTTTTC+TGG | - | chr3_1:6047321-6047340 | None:intergenic | 45.0% |
| TGATAGACTCGTAGTCAGAG+TGG | - | chr3_1:6047338-6047357 | None:intergenic | 45.0% | |
| TTGGGTCCCTGCATATGTAA+GGG | + | chr3_1:6047491-6047510 | Msa0346130:intron | 45.0% | |
| GGTGGAGGAAGGATATAAAG+CGG | + | chr3_1:6048033-6048052 | Msa0346130:intron | 45.0% | |
| !! | AAGGGCATCCTCCTTCTAAA+AGG | + | chr3_1:6048315-6048334 | Msa0346130:CDS | 45.0% |
| CCGAATGACATCCCATCACA+AGG | - | chr3_1:6046376-6046395 | None:intergenic | 50.0% | |
| !! | TATGCTGAACGGGTGGGTTT+TGG | + | chr3_1:6046430-6046449 | Msa0346130:CDS | 50.0% |
| ! | TAGGGGCACAAATGAAGAGG+AGG | + | chr3_1:6046707-6046726 | Msa0346130:CDS | 50.0% |
| GTTGGGTCCCTGCATATGTA+AGG | + | chr3_1:6047490-6047509 | Msa0346130:intron | 50.0% | |
| ! | GTAAGGGACACATTTTGGGC+TGG | + | chr3_1:6047507-6047526 | Msa0346130:intron | 50.0% |
| !!! | TATTTTGGCACGGTGGAGGA+AGG | + | chr3_1:6048022-6048041 | Msa0346130:intron | 50.0% |
| GGAGGAAGGATATAAAGCGG+AGG | + | chr3_1:6048036-6048055 | Msa0346130:intron | 50.0% | |
| CAGGGCCAATGTACATCTAG+AGG | + | chr3_1:6048515-6048534 | Msa0346130:intron | 50.0% | |
| GCAGGCTCCTTATTACTCTC+AGG | + | chr3_1:6049194-6049213 | Msa0346130:intron | 50.0% | |
| ! | AGACGACTACGACTTGGGAC+AGG | + | chr3_1:6046856-6046875 | Msa0346130:intron | 55.0% |
| TTCCGAAAGCTCGTCATCGG+TGG | + | chr3_1:6047268-6047287 | Msa0346130:intron | 55.0% | |
| CACCACCGATGACGAGCTTT+CGG | - | chr3_1:6047273-6047292 | None:intergenic | 55.0% | |
| CTCGTCATCGGTGGTGCTTA+TGG | + | chr3_1:6047277-6047296 | Msa0346130:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 6046195 | 6049419 | 6046195 | ID=Msa0346130;Name=Msa0346130 |
| chr3_1 | mRNA | 6046195 | 6049419 | 6046195 | ID=Msa0346130-mRNA-1;Parent=Msa0346130;Name=Msa0346130-mRNA-1;_AED=0.25;_eAED=0.33;_QI=0|0|0|0.87|0.14|0.25|8|0|308 |
| chr3_1 | exon | 6046195 | 6046201 | 6046195 | ID=Msa0346130-mRNA-1:exon:1744;Parent=Msa0346130-mRNA-1 |
| chr3_1 | exon | 6046293 | 6046494 | 6046293 | ID=Msa0346130-mRNA-1:exon:1745;Parent=Msa0346130-mRNA-1 |
| chr3_1 | exon | 6046516 | 6046683 | 6046516 | ID=Msa0346130-mRNA-1:exon:1746;Parent=Msa0346130-mRNA-1 |
| chr3_1 | exon | 6046693 | 6046799 | 6046693 | ID=Msa0346130-mRNA-1:exon:1747;Parent=Msa0346130-mRNA-1 |
| chr3_1 | exon | 6048120 | 6048361 | 6048120 | ID=Msa0346130-mRNA-1:exon:1748;Parent=Msa0346130-mRNA-1 |
| chr3_1 | exon | 6048518 | 6048610 | 6048518 | ID=Msa0346130-mRNA-1:exon:1749;Parent=Msa0346130-mRNA-1 |
| chr3_1 | exon | 6049198 | 6049254 | 6049198 | ID=Msa0346130-mRNA-1:exon:1750;Parent=Msa0346130-mRNA-1 |
| chr3_1 | exon | 6049369 | 6049419 | 6049369 | ID=Msa0346130-mRNA-1:exon:1751;Parent=Msa0346130-mRNA-1 |
| chr3_1 | CDS | 6046195 | 6046201 | 6046195 | ID=Msa0346130-mRNA-1:cds;Parent=Msa0346130-mRNA-1 |
| chr3_1 | CDS | 6046293 | 6046494 | 6046293 | ID=Msa0346130-mRNA-1:cds;Parent=Msa0346130-mRNA-1 |
| chr3_1 | CDS | 6046516 | 6046683 | 6046516 | ID=Msa0346130-mRNA-1:cds;Parent=Msa0346130-mRNA-1 |
| chr3_1 | CDS | 6046693 | 6046799 | 6046693 | ID=Msa0346130-mRNA-1:cds;Parent=Msa0346130-mRNA-1 |
| chr3_1 | CDS | 6048120 | 6048361 | 6048120 | ID=Msa0346130-mRNA-1:cds;Parent=Msa0346130-mRNA-1 |
| chr3_1 | CDS | 6048518 | 6048610 | 6048518 | ID=Msa0346130-mRNA-1:cds;Parent=Msa0346130-mRNA-1 |
| chr3_1 | CDS | 6049198 | 6049254 | 6049198 | ID=Msa0346130-mRNA-1:cds;Parent=Msa0346130-mRNA-1 |
| chr3_1 | CDS | 6049369 | 6049419 | 6049369 | ID=Msa0346130-mRNA-1:cds;Parent=Msa0346130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
