Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035670 | XP_024634837.2 | 86.806 | 144 | 10 | 2 | 128 | 268 | 298 | 435 | 1.57e-74 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035670 | A0A396J7J0 | 86.111 | 144 | 11 | 2 | 128 | 268 | 579 | 716 | 2.60e-63 | 222 |
| Msa1035670 | A0A396J7J0 | 89.209 | 139 | 4 | 2 | 1 | 128 | 1 | 139 | 2.61e-73 | 249 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa1035670 | 0.839939 | 1.173638e-57 | -8.615850e-47 |
| Msa0776990 | Msa1035670 | 0.881807 | 1.765027e-70 | -8.615850e-47 |
| Msa0777230 | Msa1035670 | 0.800771 | 1.232892e-48 | -8.615850e-47 |
| Msa1014540 | Msa1035670 | 0.809712 | 1.652035e-50 | -8.615850e-47 |
| Msa1035660 | Msa1035670 | 0.954737 | 1.503513e-112 | -8.615850e-47 |
| Msa1035670 | Msa1075540 | 0.815440 | 9.236855e-52 | -8.615850e-47 |
| Msa1035670 | Msa1165540 | 0.900090 | 1.036533e-77 | -8.615850e-47 |
| Msa1035670 | Msa1312600 | 0.800982 | 1.116444e-48 | -8.615850e-47 |
| Msa0243460 | Msa1035670 | 0.887898 | 9.518610e-73 | -8.615850e-47 |
| Msa0346130 | Msa1035670 | 0.870782 | 1.124458e-66 | -8.615850e-47 |
| Msa0857640 | Msa1035670 | 0.812239 | 4.685781e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035670 | MtrunA17_Chr2g0296781 | 89.209 | 139 | 4 | 2 | 1 | 128 | 1 | 139 | 5.03e-77 | 249 |
| Msa1035670 | MtrunA17_Chr2g0296781 | 86.111 | 144 | 11 | 2 | 128 | 268 | 579 | 716 | 5.02e-67 | 222 |
| Msa1035670 | MtrunA17_Chr6g0476441 | 88.811 | 143 | 7 | 2 | 128 | 267 | 84 | 220 | 7.59e-73 | 226 |
| Msa1035670 | MtrunA17_Chr6g0477261 | 65.500 | 200 | 37 | 5 | 129 | 302 | 469 | 662 | 4.03e-64 | 213 |
| Msa1035670 | MtrunA17_Chr6g0476431 | 85.882 | 85 | 5 | 1 | 1 | 78 | 1 | 85 | 1.79e-44 | 146 |
| Msa1035670 | MtrunA17_Chr3g0077731 | 75.410 | 122 | 19 | 3 | 158 | 274 | 1 | 116 | 1.48e-42 | 142 |
| Msa1035670 | MtrunA17_Chr1g0196541 | 51.079 | 139 | 57 | 2 | 1 | 128 | 1 | 139 | 1.09e-35 | 135 |
| Msa1035670 | MtrunA17_Chr1g0196541 | 49.405 | 168 | 66 | 5 | 130 | 293 | 575 | 727 | 8.51e-32 | 124 |
| Msa1035670 | MtrunA17_Chr6g0451441 | 33.333 | 135 | 76 | 4 | 1 | 123 | 91 | 223 | 1.14e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACACTGCGTTTGAGTTAT+AGG | 0.177962 | 7_1:+71637791 | None:intergenic |
| CCTTTACTTCGAGCTACTTT+AGG | 0.245170 | 7_1:+71636061 | None:intergenic |
| TACTTGTTCTGATTTGTTAC+AGG | 0.246785 | 7_1:-71635124 | Msa1035670:intron |
| AATGCGTGTATTTATTTAGA+TGG | 0.249459 | 7_1:-71637758 | Msa1035670:CDS |
| TATGCTGAACGGGTGGGTTT+TGG | 0.279098 | 7_1:-71637926 | Msa1035670:CDS |
| AATCAGAACAAGTAGCATTA+TGG | 0.298354 | 7_1:+71635133 | None:intergenic |
| TTAGATCGAACAAGAATATA+GGG | 0.302032 | 7_1:-71637668 | Msa1035670:CDS |
| TGCGTTTGAGTTATAGGATT+TGG | 0.304891 | 7_1:+71637797 | None:intergenic |
| CGTTGAAGCAAATTCATAAA+AGG | 0.311900 | 7_1:+71636222 | None:intergenic |
| ATTTGAGTCTATTGATGAAT+TGG | 0.319207 | 7_1:-71638053 | Msa1035670:five_prime_UTR |
| CAATCTTCTTCTACAATTGT+AGG | 0.328846 | 7_1:+71636115 | None:intergenic |
| TTTAGATCGAACAAGAATAT+AGG | 0.366556 | 7_1:-71637669 | Msa1035670:CDS |
| AAGGGCGTCCTCCTTCTAAA+AGG | 0.371475 | 7_1:-71636042 | Msa1035670:CDS |
| CTAAAATACCTTGCTTTCCC+TGG | 0.410842 | 7_1:+71637687 | None:intergenic |
| CATAATCATGATCTAAGTCC+AGG | 0.436852 | 7_1:-71637705 | Msa1035670:CDS |
| TCTCAACTTGGTGATAGAAT+TGG | 0.438239 | 7_1:-71635790 | Msa1035670:CDS |
| GCAGGCTCCTTATTACTCTC+AGG | 0.438514 | 7_1:-71635163 | Msa1035670:intron |
| CCTTGTGATGGGATGTCATT+CGG | 0.449339 | 7_1:-71637983 | Msa1035670:exon |
| CCTAAAGTAGCTCGAAGTAA+AGG | 0.460010 | 7_1:-71636061 | Msa1035670:CDS |
| TTACAAGAATTATGCTGAAC+GGG | 0.461474 | 7_1:-71637936 | Msa1035670:CDS |
| GTAGGAGATGTTTCATTACA+TGG | 0.465504 | 7_1:+71636133 | None:intergenic |
| TATAACTCAAACGCAGTGTA+AGG | 0.477984 | 7_1:-71637789 | Msa1035670:CDS |
| AATGATTGTTTAGAAGCAAA+TGG | 0.480295 | 7_1:-71638025 | Msa1035670:five_prime_UTR |
| TTTATGACCTGAGAGTAATA+AGG | 0.482284 | 7_1:+71635156 | None:intergenic |
| CTAAAGTAGCTCGAAGTAAA+GGG | 0.483371 | 7_1:-71636060 | Msa1035670:CDS |
| TTTGTTGTATTAGTGCAAGA+AGG | 0.490969 | 7_1:-71638076 | None:intergenic |
| TAGGATCAAGAATGGTAGCT+TGG | 0.494392 | 7_1:+71636080 | None:intergenic |
| GATGTCATTCGGATCTGAAA+AGG | 0.494917 | 7_1:-71637972 | Msa1035670:CDS |
| TCCTTTGTCGTTGAAGCAGA+TGG | 0.513029 | 7_1:-71637579 | Msa1035670:intron |
| AGCTACTTTAGGATCAAGAA+TGG | 0.514436 | 7_1:+71636072 | None:intergenic |
| CTTGACCTCTAGATGTACAT+TGG | 0.528356 | 7_1:+71635839 | None:intergenic |
| ATCTAAGTCCAGGGAAAGCA+AGG | 0.538270 | 7_1:-71637695 | Msa1035670:CDS |
| AAGAATTATGCTGAACGGGT+GGG | 0.547191 | 7_1:-71637932 | Msa1035670:CDS |
| AGCATAATTCTTGTAATACT+CGG | 0.547475 | 7_1:+71637943 | None:intergenic |
| CAAGAATTATGCTGAACGGG+TGG | 0.555569 | 7_1:-71637933 | Msa1035670:CDS |
| TTAGAACTCAATGATCAAGC+TGG | 0.558672 | 7_1:-71637627 | Msa1035670:CDS |
| TAGAACTCAATGATCAAGCT+GGG | 0.577189 | 7_1:-71637626 | Msa1035670:CDS |
| CTGCTTCAACGACAAAGGAT+CGG | 0.586561 | 7_1:+71637583 | None:intergenic |
| AAATATTCAAGTTCAAGAAG+AGG | 0.587967 | 7_1:-71635942 | Msa1035670:CDS |
| ACCATCTGCTTCAACGACAA+AGG | 0.593984 | 7_1:+71637578 | None:intergenic |
| ATAATCATGATCTAAGTCCA+GGG | 0.602115 | 7_1:-71637704 | Msa1035670:CDS |
| ATTACAAGAATTATGCTGAA+CGG | 0.604383 | 7_1:-71637937 | Msa1035670:CDS |
| AAGAAGAAACACCTTGTGAT+GGG | 0.621474 | 7_1:-71637994 | Msa1035670:five_prime_UTR |
| ATATAGGGGCACAAATGAAG+AGG | 0.627813 | 7_1:-71637653 | Msa1035670:CDS |
| GAAGAAGAAACACCTTGTGA+TGG | 0.629834 | 7_1:-71637995 | Msa1035670:five_prime_UTR |
| TAGATCGAACAAGAATATAG+GGG | 0.631587 | 7_1:-71637667 | Msa1035670:CDS |
| CCGAATGACATCCCATCACA+AGG | 0.631658 | 7_1:+71637983 | None:intergenic |
| CAGGGCCAATGTACATCTAG+AGG | 0.633528 | 7_1:-71635844 | Msa1035670:CDS |
| TAGGGGCACAAATGAAGAGG+AGG | 0.634884 | 7_1:-71637650 | Msa1035670:CDS |
| GCGTCTCTATGATTATTGTG+CGG | 0.646780 | 7_1:+71634967 | None:intergenic |
| TATTGTGCGGATCTTTCATG+TGG | 0.661652 | 7_1:+71634980 | None:intergenic |
| TTTATGAATTTGCTTCAACG+AGG | 0.719121 | 7_1:-71636219 | Msa1035670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAGTTCAAAAAA+AGG | - | chr7_1:71635127-71635146 | Msa1035670:CDS | 10.0% |
| !! | TCATTTAATTAAAAAATGAT+TGG | - | chr7_1:71637588-71637607 | Msa1035670:CDS | 10.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | + | chr7_1:71635718-71635737 | None:intergenic | 15.0% |
| !! | ATTGAAAGATAAAATTGAAA+AGG | - | chr7_1:71636301-71636320 | Msa1035670:intron | 15.0% |
| !!! | CTTGAATATTTTTACTATTT+TGG | + | chr7_1:71637075-71637094 | None:intergenic | 15.0% |
| !!! | GTCTAATTTAAGAATTTTTA+TGG | - | chr7_1:71637159-71637178 | Msa1035670:intron | 15.0% |
| !!! | ATTTTTATAATGAACATAAG+TGG | - | chr7_1:71637823-71637842 | Msa1035670:CDS | 15.0% |
| !!! | CAATACAAAAATATTTTGTG+AGG | - | chr7_1:71635559-71635578 | Msa1035670:intron | 20.0% |
| !!! | TAAATGTGGTTTTGATAATT+TGG | - | chr7_1:71636739-71636758 | Msa1035670:intron | 20.0% |
| !!! | AATTTAAGAATTTTTATGGC+AGG | - | chr7_1:71637163-71637182 | Msa1035670:intron | 20.0% |
| !!! | ATTTAAGAATTTTTATGGCA+GGG | - | chr7_1:71637164-71637183 | Msa1035670:intron | 20.0% |
| !!! | ATTATAGTTTTTTCTATGAC+AGG | - | chr7_1:71637453-71637472 | Msa1035670:intron | 20.0% |
| !!! | TTATAGTTTTTTCTATGACA+GGG | - | chr7_1:71637454-71637473 | Msa1035670:intron | 20.0% |
| !! | TTAGGTATCAAATTATTGAT+GGG | - | chr7_1:71637521-71637540 | Msa1035670:intron | 20.0% |
| !! | TTAAATGAAAGTAAGAAATC+AGG | + | chr7_1:71637576-71637595 | None:intergenic | 20.0% |
| !! | GTTAATTATATATTCTTTGC+AGG | - | chr7_1:71637845-71637864 | Msa1035670:intron | 20.0% |
| ! | ATTTGAGTCTATTGATGAAT+TGG | - | chr7_1:71634973-71634992 | Msa1035670:CDS | 25.0% |
| ! | AATGATTGTTTAGAAGCAAA+TGG | - | chr7_1:71635001-71635020 | Msa1035670:intron | 25.0% |
| ! | AGCATAATTCTTGTAATACT+CGG | + | chr7_1:71635086-71635105 | None:intergenic | 25.0% |
| ! | ATTACAAGAATTATGCTGAA+CGG | - | chr7_1:71635089-71635108 | Msa1035670:intron | 25.0% |
| ! | AATGCGTGTATTTATTTAGA+TGG | - | chr7_1:71635268-71635287 | Msa1035670:intron | 25.0% |
| ! | TTTAGATCGAACAAGAATAT+AGG | - | chr7_1:71635357-71635376 | Msa1035670:intron | 25.0% |
| ! | TTAGATCGAACAAGAATATA+GGG | - | chr7_1:71635358-71635377 | Msa1035670:intron | 25.0% |
| !! | CAGTCAATTTTATTATGTGA+TGG | - | chr7_1:71635596-71635615 | Msa1035670:intron | 25.0% |
| !!! | ATTTTATTATGTGATGGATG+TGG | - | chr7_1:71635602-71635621 | Msa1035670:intron | 25.0% |
| !! | TTACTTGGTTATTTAAGACA+TGG | - | chr7_1:71635832-71635851 | Msa1035670:CDS | 25.0% |
| ! | AAAAAGATTCCAGAAAAGTT+TGG | - | chr7_1:71635978-71635997 | Msa1035670:CDS | 25.0% |
| ! | ATTTCTTGTATTAGTCACTT+TGG | - | chr7_1:71636359-71636378 | Msa1035670:intron | 25.0% |
| !!! | TGGTAAATGCTTTTTGAAAT+TGG | + | chr7_1:71636394-71636413 | None:intergenic | 25.0% |
| ! | ATTTACCAATGCAAAGTTTA+AGG | - | chr7_1:71636406-71636425 | Msa1035670:intron | 25.0% |
| ! | AAAGTTTAAGGAATTCCAAT+TGG | - | chr7_1:71636418-71636437 | Msa1035670:intron | 25.0% |
| ! | GATGAAAGATATTATGTTCA+TGG | - | chr7_1:71636538-71636557 | Msa1035670:intron | 25.0% |
| !!! | CATCTAATTATATTTTGGCA+CGG | - | chr7_1:71636681-71636700 | Msa1035670:intron | 25.0% |
| ! | AGGTATACACTTATTAAATG+TGG | - | chr7_1:71636725-71636744 | Msa1035670:intron | 25.0% |
| !! | AAATATTCAAGTTCAAGAAG+AGG | - | chr7_1:71637084-71637103 | Msa1035670:intron | 25.0% |
| ! | ATATAACCATTCAACCATTT+AGG | + | chr7_1:71637376-71637395 | None:intergenic | 25.0% |
| ! | CTTAGGTATCAAATTATTGA+TGG | - | chr7_1:71637520-71637539 | Msa1035670:intron | 25.0% |
| !! | AATCCAAATCAAGAACATTT+TGG | - | chr7_1:71637745-71637764 | Msa1035670:CDS | 25.0% |
| ! | TGTATGAAAATACAATCTGT+TGG | - | chr7_1:71637947-71637966 | Msa1035670:CDS | 25.0% |
| TTACAAGAATTATGCTGAAC+GGG | - | chr7_1:71635090-71635109 | Msa1035670:intron | 30.0% | |
| AAGTTCAAAAAAAGGAGATG+AGG | - | chr7_1:71635135-71635154 | Msa1035670:CDS | 30.0% | |
| AGTTCAAAAAAAGGAGATGA+GGG | - | chr7_1:71635136-71635155 | Msa1035670:CDS | 30.0% | |
| ATAATCATGATCTAAGTCCA+GGG | - | chr7_1:71635322-71635341 | Msa1035670:intron | 30.0% | |
| TAGATCGAACAAGAATATAG+GGG | - | chr7_1:71635359-71635378 | Msa1035670:intron | 30.0% | |
| GGTTATGAAAATCTCACATT+TGG | - | chr7_1:71635468-71635487 | Msa1035670:intron | 30.0% | |
| ! | AGGGTTGCATATGAATATTT+TGG | - | chr7_1:71635672-71635691 | Msa1035670:intron | 30.0% |
| TGATGATTTACTCCAACAAA+AGG | + | chr7_1:71635756-71635775 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+CGG | - | chr7_1:71635756-71635775 | Msa1035670:intron | 30.0% | |
| ! | AGGATACTGAAACTTTTACT+TGG | - | chr7_1:71635817-71635836 | Msa1035670:CDS | 30.0% |
| ! | TTGGTTATTTAAGACATGGT+TGG | - | chr7_1:71635836-71635855 | Msa1035670:CDS | 30.0% |
| ! | ACAAACTACATGATAACGAA+TGG | - | chr7_1:71636108-71636127 | Msa1035670:CDS | 30.0% |
| ! | ATATGTAAGGGACACATTTT+GGG | - | chr7_1:71636172-71636191 | Msa1035670:CDS | 30.0% |
| !!! | AGTATGAACTCGTTTTTTGA+TGG | - | chr7_1:71636224-71636243 | Msa1035670:CDS | 30.0% |
| GAATTCCTTAAACTTTGCAT+TGG | + | chr7_1:71636414-71636433 | None:intergenic | 30.0% | |
| ! | TCATAGAAGCTATTTCCAAT+TGG | + | chr7_1:71636436-71636455 | None:intergenic | 30.0% |
| TTTAAATTCAAACAAGCAGC+AGG | + | chr7_1:71636600-71636619 | None:intergenic | 30.0% | |
| ! | TGCTGCTTGTTTGAATTTAA+AGG | - | chr7_1:71636599-71636618 | Msa1035670:intron | 30.0% |
| ! | CGTGCCATCTAATTATATTT+TGG | - | chr7_1:71636676-71636695 | Msa1035670:intron | 30.0% |
| CGTGCCAAAATATAATTAGA+TGG | + | chr7_1:71636683-71636702 | None:intergenic | 30.0% | |
| CGTTGAAGCAAATTCATAAA+AGG | + | chr7_1:71636807-71636826 | None:intergenic | 30.0% | |
| ! | TTTATGAATTTGCTTCAACG+AGG | - | chr7_1:71636807-71636826 | Msa1035670:intron | 30.0% |
| CAATCTTCTTCTACAATTGT+AGG | + | chr7_1:71636914-71636933 | None:intergenic | 30.0% | |
| ! | ATAGAAGTCTTCCTTTTAGA+AGG | + | chr7_1:71636998-71637017 | None:intergenic | 30.0% |
| ATATACTAGTCATGCAAATC+AGG | - | chr7_1:71637289-71637308 | Msa1035670:intron | 30.0% | |
| GGTGCAAATATAAGATTCAT+TGG | - | chr7_1:71637310-71637329 | Msa1035670:intron | 30.0% | |
| CTACAAATGAAGAGTTTCTT+AGG | - | chr7_1:71637503-71637522 | Msa1035670:intron | 30.0% | |
| TATCAAATTATTGATGGGAC+TGG | - | chr7_1:71637526-71637545 | Msa1035670:intron | 30.0% | |
| ATCAAATTATTGATGGGACT+GGG | - | chr7_1:71637527-71637546 | Msa1035670:intron | 30.0% | |
| TGCATGTTAATATCTATACC+AGG | - | chr7_1:71637666-71637685 | Msa1035670:CDS | 30.0% | |
| TATGTTTGTAGCAGTGAAAA+TGG | - | chr7_1:71637697-71637716 | Msa1035670:CDS | 30.0% | |
| TGACCAAAATGTTCTTGATT+TGG | + | chr7_1:71637751-71637770 | None:intergenic | 30.0% | |
| !! | ACATTTTGGTCAAGTAAACA+AGG | - | chr7_1:71637759-71637778 | Msa1035670:CDS | 30.0% |
| ! | CAAGGTGCAAATATAGATTT+TGG | - | chr7_1:71637777-71637796 | Msa1035670:CDS | 30.0% |
| TTTATGACCTGAGAGTAATA+AGG | + | chr7_1:71637873-71637892 | None:intergenic | 30.0% | |
| AATCAGAACAAGTAGCATTA+TGG | + | chr7_1:71637896-71637915 | None:intergenic | 30.0% | |
| !! | TACTTGTTCTGATTTGTTAC+AGG | - | chr7_1:71637902-71637921 | Msa1035670:CDS | 30.0% |
| !!! | TCTGTTGGTTTTTTATTGTG+TGG | - | chr7_1:71637962-71637981 | Msa1035670:CDS | 30.0% |
| !!! | CTGTTGGTTTTTTATTGTGT+GGG | - | chr7_1:71637963-71637982 | Msa1035670:CDS | 30.0% |
| ! | TAATCCCTTTCTCTTTTTCT+AGG | - | chr7_1:71638016-71638035 | Msa1035670:five_prime_UTR | 30.0% |
| TGTTCCTAGAAAAAGAGAAA+GGG | + | chr7_1:71638023-71638042 | None:intergenic | 30.0% | |
| TTGTTCCTAGAAAAAGAGAA+AGG | + | chr7_1:71638024-71638043 | None:intergenic | 30.0% | |
| AAGAAGAAACACCTTGTGAT+GGG | - | chr7_1:71635032-71635051 | Msa1035670:intron | 35.0% | |
| GTTCAAAAAAAGGAGATGAG+GGG | - | chr7_1:71635137-71635156 | Msa1035670:CDS | 35.0% | |
| ! | TGCGTTTGAGTTATAGGATT+TGG | + | chr7_1:71635232-71635251 | None:intergenic | 35.0% |
| ! | TTACACTGCGTTTGAGTTAT+AGG | + | chr7_1:71635238-71635257 | None:intergenic | 35.0% |
| TATAACTCAAACGCAGTGTA+AGG | - | chr7_1:71635237-71635256 | Msa1035670:intron | 35.0% | |
| CATAATCATGATCTAAGTCC+AGG | - | chr7_1:71635321-71635340 | Msa1035670:intron | 35.0% | |
| TTAGAACTCAATGATCAAGC+TGG | - | chr7_1:71635399-71635418 | Msa1035670:intron | 35.0% | |
| TAGAACTCAATGATCAAGCT+GGG | - | chr7_1:71635400-71635419 | Msa1035670:intron | 35.0% | |
| ! | TCGGTTACGAAATGTGTTTT+GGG | - | chr7_1:71635635-71635654 | Msa1035670:intron | 35.0% |
| TGATCAGTGATTATGGCATT+TGG | + | chr7_1:71635882-71635901 | None:intergenic | 35.0% | |
| TCTGTCTTGATCAGTGATTA+TGG | + | chr7_1:71635889-71635908 | None:intergenic | 35.0% | |
| ! | CCTCGTCATAAAATCACTTT+TGG | + | chr7_1:71636066-71636085 | None:intergenic | 35.0% |
| ! | CCAAAAGTGATTTTATGACG+AGG | - | chr7_1:71636063-71636082 | Msa1035670:CDS | 35.0% |
| ! | AAAGTGATTTTATGACGAGG+TGG | - | chr7_1:71636066-71636085 | Msa1035670:CDS | 35.0% |
| ! | AAGTGATTTTATGACGAGGT+GGG | - | chr7_1:71636067-71636086 | Msa1035670:CDS | 35.0% |
| ! | ATGATAACGAATGGCTGAAA+GGG | - | chr7_1:71636117-71636136 | Msa1035670:CDS | 35.0% |
| ! | CATATGTAAGGGACACATTT+TGG | - | chr7_1:71636171-71636190 | Msa1035670:CDS | 35.0% |
| TCATGCATGTTTCAACAGAT+TGG | - | chr7_1:71636463-71636482 | Msa1035670:intron | 35.0% | |
| TTTGTGTGCTTAAGCTCATA+GGG | - | chr7_1:71636642-71636661 | Msa1035670:intron | 35.0% | |
| !!! | CTAATTATATTTTGGCACGG+TGG | - | chr7_1:71636684-71636703 | Msa1035670:intron | 35.0% |
| !!! | TGTGGTTTTGATAATTTGGC+TGG | - | chr7_1:71636743-71636762 | Msa1035670:intron | 35.0% |
| AAAACTGAATTGCAACGTGT+AGG | - | chr7_1:71636767-71636786 | Msa1035670:intron | 35.0% | |
| GTAGGAGATGTTTCATTACA+TGG | + | chr7_1:71636896-71636915 | None:intergenic | 35.0% | |
| !! | AGCTACTTTAGGATCAAGAA+TGG | + | chr7_1:71636957-71636976 | None:intergenic | 35.0% |
| CTAAAGTAGCTCGAAGTAAA+GGG | - | chr7_1:71636966-71636985 | Msa1035670:intron | 35.0% | |
| ! | GTGTTTTACAGATCTCAACT+TGG | - | chr7_1:71637224-71637243 | Msa1035670:intron | 35.0% |
| ! | TCTCAACTTGGTGATAGAAT+TGG | - | chr7_1:71637236-71637255 | Msa1035670:intron | 35.0% |
| AGTGTGAACATAGTCCTAAA+TGG | - | chr7_1:71637359-71637378 | Msa1035670:intron | 35.0% | |
| CATAGTCCTAAATGGTTGAA+TGG | - | chr7_1:71637367-71637386 | Msa1035670:intron | 35.0% | |
| GAAGAAGAAACACCTTGTGA+TGG | - | chr7_1:71635031-71635050 | Msa1035670:intron | 40.0% | |
| GATGTCATTCGGATCTGAAA+AGG | - | chr7_1:71635054-71635073 | Msa1035670:intron | 40.0% | |
| AAGAATTATGCTGAACGGGT+GGG | - | chr7_1:71635094-71635113 | Msa1035670:intron | 40.0% | |
| CTAAAATACCTTGCTTTCCC+TGG | + | chr7_1:71635342-71635361 | None:intergenic | 40.0% | |
| ! | ATATAGGGGCACAAATGAAG+AGG | - | chr7_1:71635373-71635392 | Msa1035670:intron | 40.0% |
| AAAGCAAGACAACTACGACT+TGG | - | chr7_1:71635519-71635538 | Msa1035670:intron | 40.0% | |
| AAGCAAGACAACTACGACTT+GGG | - | chr7_1:71635520-71635539 | Msa1035670:intron | 40.0% | |
| TGGATGTGGATGATGAAAGT+CGG | - | chr7_1:71635616-71635635 | Msa1035670:intron | 40.0% | |
| ! | GTCGGTTACGAAATGTGTTT+TGG | - | chr7_1:71635634-71635653 | Msa1035670:intron | 40.0% |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | - | chr7_1:71635741-71635760 | Msa1035670:intron | 40.0% |
| ACTCCAACAAAAGGAGCAAA+AGG | + | chr7_1:71635747-71635766 | None:intergenic | 40.0% | |
| TTGTGCTCTGTTGTCAAATG+AGG | - | chr7_1:71635797-71635816 | Msa1035670:CDS | 40.0% | |
| ACATGGTTGGAATGTATGCA+TGG | - | chr7_1:71635849-71635868 | Msa1035670:intron | 40.0% | |
| ! | CATGATAACGAATGGCTGAA+AGG | - | chr7_1:71636116-71636135 | Msa1035670:CDS | 40.0% |
| ! | TATTTGTTGAGCGACATCGT+TGG | - | chr7_1:71636141-71636160 | Msa1035670:CDS | 40.0% |
| ! | ATTTGTTGAGCGACATCGTT+GGG | - | chr7_1:71636142-71636161 | Msa1035670:CDS | 40.0% |
| ATGTGTCCCTTACATATGCA+GGG | + | chr7_1:71636169-71636188 | None:intergenic | 40.0% | |
| AATGTGTCCCTTACATATGC+AGG | + | chr7_1:71636170-71636189 | None:intergenic | 40.0% | |
| TGCATGTTTCAACAGATTGG+AGG | - | chr7_1:71636466-71636485 | Msa1035670:intron | 40.0% | |
| GCATGTTTCAACAGATTGGA+GGG | - | chr7_1:71636467-71636486 | Msa1035670:intron | 40.0% | |
| TTTCAACAGATTGGAGGGTT+TGG | - | chr7_1:71636472-71636491 | Msa1035670:intron | 40.0% | |
| CTATGAGCTTAAGCACACAA+AGG | + | chr7_1:71636643-71636662 | None:intergenic | 40.0% | |
| CTTTGTGTGCTTAAGCTCAT+AGG | - | chr7_1:71636641-71636660 | Msa1035670:intron | 40.0% | |
| !!! | ATTATATTTTGGCACGGTGG+AGG | - | chr7_1:71636687-71636706 | Msa1035670:intron | 40.0% |
| TAGGATCAAGAATGGTAGCT+TGG | + | chr7_1:71636949-71636968 | None:intergenic | 40.0% | |
| ! | CCTTTACTTCGAGCTACTTT+AGG | + | chr7_1:71636968-71636987 | None:intergenic | 40.0% |
| CCTAAAGTAGCTCGAAGTAA+AGG | - | chr7_1:71636965-71636984 | Msa1035670:intron | 40.0% | |
| !! | GAAGTCTTCCTTTTAGAAGG+AGG | + | chr7_1:71636995-71637014 | None:intergenic | 40.0% |
| CTTGACCTCTAGATGTACAT+TGG | + | chr7_1:71637190-71637209 | None:intergenic | 40.0% | |
| ! | TACAAACATAGTTCTGCTCC+TGG | + | chr7_1:71637687-71637706 | None:intergenic | 40.0% |
| TATTGTGCGGATCTTTCATG+TGG | + | chr7_1:71638049-71638068 | None:intergenic | 40.0% | |
| GCGTCTCTATGATTATTGTG+CGG | + | chr7_1:71638062-71638081 | None:intergenic | 40.0% | |
| ! | CCTTGTGATGGGATGTCATT+CGG | - | chr7_1:71635043-71635062 | Msa1035670:intron | 45.0% |
| CAAGAATTATGCTGAACGGG+TGG | - | chr7_1:71635093-71635112 | Msa1035670:intron | 45.0% | |
| ATCTAAGTCCAGGGAAAGCA+AGG | - | chr7_1:71635331-71635350 | Msa1035670:intron | 45.0% | |
| CTGCTTCAACGACAAAGGAT+CGG | + | chr7_1:71635446-71635465 | None:intergenic | 45.0% | |
| TCCTTTGTCGTTGAAGCAGA+TGG | - | chr7_1:71635447-71635466 | Msa1035670:intron | 45.0% | |
| ACCATCTGCTTCAACGACAA+AGG | + | chr7_1:71635451-71635470 | None:intergenic | 45.0% | |
| TTTGGGCAGATGCAAGATGT+AGG | - | chr7_1:71635652-71635671 | Msa1035670:intron | 45.0% | |
| TTGGGCAGATGCAAGATGTA+GGG | - | chr7_1:71635653-71635672 | Msa1035670:intron | 45.0% | |
| TCACGGTCAGTCTATGTTGT+TGG | - | chr7_1:71635773-71635792 | Msa1035670:CDS | 45.0% | |
| CACGGTCAGTCTATGTTGTT+GGG | - | chr7_1:71635774-71635793 | Msa1035670:CDS | 45.0% | |
| TCTTTCCGAAAGCTCGTCAT+CGG | - | chr7_1:71635934-71635953 | Msa1035670:CDS | 45.0% | |
| ! | GAGTGGCTACCAAACTTTTC+TGG | + | chr7_1:71635990-71636009 | None:intergenic | 45.0% |
| TGATAGACTCGTAGTCAGAG+TGG | + | chr7_1:71636007-71636026 | None:intergenic | 45.0% | |
| TTGGGTCCCTGCATATGTAA+GGG | - | chr7_1:71636160-71636179 | Msa1035670:CDS | 45.0% | |
| GGTGGAGGAAGGATATAAAG+CGG | - | chr7_1:71636702-71636721 | Msa1035670:intron | 45.0% | |
| CCGAATGACATCCCATCACA+AGG | + | chr7_1:71635046-71635065 | None:intergenic | 50.0% | |
| !! | TATGCTGAACGGGTGGGTTT+TGG | - | chr7_1:71635100-71635119 | Msa1035670:intron | 50.0% |
| ! | TAGGGGCACAAATGAAGAGG+AGG | - | chr7_1:71635376-71635395 | Msa1035670:intron | 50.0% |
| ! | AGACAACTACGACTTGGGAC+AGG | - | chr7_1:71635525-71635544 | Msa1035670:intron | 50.0% |
| GTTGGGTCCCTGCATATGTA+AGG | - | chr7_1:71636159-71636178 | Msa1035670:CDS | 50.0% | |
| ! | GTAAGGGACACATTTTGGGC+TGG | - | chr7_1:71636176-71636195 | Msa1035670:CDS | 50.0% |
| !!! | TATTTTGGCACGGTGGAGGA+AGG | - | chr7_1:71636691-71636710 | Msa1035670:intron | 50.0% |
| GGAGGAAGGATATAAAGCGG+AGG | - | chr7_1:71636705-71636724 | Msa1035670:intron | 50.0% | |
| !! | AAGGGCGTCCTCCTTCTAAA+AGG | - | chr7_1:71636984-71637003 | Msa1035670:intron | 50.0% |
| CAGGGCCAATGTACATCTAG+AGG | - | chr7_1:71637182-71637201 | Msa1035670:intron | 50.0% | |
| GCAGGCTCCTTATTACTCTC+AGG | - | chr7_1:71637863-71637882 | Msa1035670:intron | 50.0% | |
| TTCCGAAAGCTCGTCATCGG+TGG | - | chr7_1:71635937-71635956 | Msa1035670:CDS | 55.0% | |
| CACCACCGATGACGAGCTTT+CGG | + | chr7_1:71635942-71635961 | None:intergenic | 55.0% | |
| CTCGTCATCGGTGGTGCTTA+TGG | - | chr7_1:71635946-71635965 | Msa1035670:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 71634963 | 71638085 | 71634963 | ID=Msa1035670;Name=Msa1035670 |
| chr7_1 | mRNA | 71634963 | 71638085 | 71634963 | ID=Msa1035670-mRNA-1;Parent=Msa1035670;Name=Msa1035670-mRNA-1;_AED=0.23;_eAED=0.32;_QI=92|0|0|1|0.14|0.12|8|0|302 |
| chr7_1 | exon | 71637884 | 71638085 | 71637884 | ID=Msa1035670-mRNA-1:exon:17340;Parent=Msa1035670-mRNA-1 |
| chr7_1 | exon | 71637739 | 71637862 | 71637739 | ID=Msa1035670-mRNA-1:exon:17339;Parent=Msa1035670-mRNA-1 |
| chr7_1 | exon | 71637580 | 71637727 | 71637580 | ID=Msa1035670-mRNA-1:exon:17338;Parent=Msa1035670-mRNA-1 |
| chr7_1 | exon | 71636030 | 71636259 | 71636030 | ID=Msa1035670-mRNA-1:exon:17337;Parent=Msa1035670-mRNA-1 |
| chr7_1 | exon | 71635925 | 71636020 | 71635925 | ID=Msa1035670-mRNA-1:exon:17336;Parent=Msa1035670-mRNA-1 |
| chr7_1 | exon | 71635771 | 71635863 | 71635771 | ID=Msa1035670-mRNA-1:exon:17335;Parent=Msa1035670-mRNA-1 |
| chr7_1 | exon | 71635125 | 71635181 | 71635125 | ID=Msa1035670-mRNA-1:exon:17334;Parent=Msa1035670-mRNA-1 |
| chr7_1 | exon | 71634963 | 71635010 | 71634963 | ID=Msa1035670-mRNA-1:exon:17333;Parent=Msa1035670-mRNA-1 |
| chr7_1 | five_prime_UTR | 71637994 | 71638085 | 71637994 | ID=Msa1035670-mRNA-1:five_prime_utr;Parent=Msa1035670-mRNA-1 |
| chr7_1 | CDS | 71637884 | 71637993 | 71637884 | ID=Msa1035670-mRNA-1:cds;Parent=Msa1035670-mRNA-1 |
| chr7_1 | CDS | 71637739 | 71637862 | 71637739 | ID=Msa1035670-mRNA-1:cds;Parent=Msa1035670-mRNA-1 |
| chr7_1 | CDS | 71637580 | 71637727 | 71637580 | ID=Msa1035670-mRNA-1:cds;Parent=Msa1035670-mRNA-1 |
| chr7_1 | CDS | 71636030 | 71636259 | 71636030 | ID=Msa1035670-mRNA-1:cds;Parent=Msa1035670-mRNA-1 |
| chr7_1 | CDS | 71635925 | 71636020 | 71635925 | ID=Msa1035670-mRNA-1:cds;Parent=Msa1035670-mRNA-1 |
| chr7_1 | CDS | 71635771 | 71635863 | 71635771 | ID=Msa1035670-mRNA-1:cds;Parent=Msa1035670-mRNA-1 |
| chr7_1 | CDS | 71635125 | 71635181 | 71635125 | ID=Msa1035670-mRNA-1:cds;Parent=Msa1035670-mRNA-1 |
| chr7_1 | CDS | 71634963 | 71635010 | 71634963 | ID=Msa1035670-mRNA-1:cds;Parent=Msa1035670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
