Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035660 | XP_039686389.1 | 86.111 | 144 | 11 | 2 | 163 | 303 | 610 | 747 | 2.85e-61 | 220 |
| Msa1035660 | XP_039686389.1 | 90.000 | 170 | 6 | 2 | 5 | 163 | 1 | 170 | 9.80e-96 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035660 | A0A396J7J0 | 86.111 | 144 | 11 | 2 | 163 | 303 | 579 | 716 | 1.87e-62 | 221 |
| Msa1035660 | A0A396J7J0 | 89.209 | 139 | 4 | 2 | 36 | 163 | 1 | 139 | 1.01e-72 | 248 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa1035660 | 0.846683 | 1.861920e-59 | -8.615850e-47 |
| Msa0776990 | Msa1035660 | 0.864981 | 8.223408e-65 | -8.615850e-47 |
| Msa0791880 | Msa1035660 | 0.811512 | 6.745552e-51 | -8.615850e-47 |
| Msa0832040 | Msa1035660 | 0.819735 | 9.936645e-53 | -8.615850e-47 |
| Msa0182680 | Msa1035660 | 0.801584 | 8.406027e-49 | -8.615850e-47 |
| Msa1014540 | Msa1035660 | 0.806779 | 6.969500e-50 | -8.615850e-47 |
| Msa1035660 | Msa1035670 | 0.954737 | 1.503513e-112 | -8.615850e-47 |
| Msa1035660 | Msa1075540 | 0.818272 | 2.137167e-52 | -8.615850e-47 |
| Msa1035660 | Msa1165540 | 0.872378 | 3.330675e-67 | -8.615850e-47 |
| Msa1035660 | Msa1312600 | 0.827692 | 1.359688e-54 | -8.615850e-47 |
| Msa1035660 | Msa1366810 | 0.808109 | 3.640058e-50 | -8.615850e-47 |
| Msa1035660 | Msa1366970 | 0.814213 | 1.727436e-51 | -8.615850e-47 |
| Msa0243460 | Msa1035660 | 0.876315 | 1.539728e-68 | -8.615850e-47 |
| Msa0278110 | Msa1035660 | 0.805038 | 1.619046e-49 | -8.615850e-47 |
| Msa0346130 | Msa1035660 | 0.867861 | 1.001213e-65 | -8.615850e-47 |
| Msa0857640 | Msa1035660 | 0.825862 | 3.718374e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035660 | MtrunA17_Chr2g0296781 | 89.209 | 139 | 4 | 2 | 36 | 163 | 1 | 139 | 1.94e-76 | 248 |
| Msa1035660 | MtrunA17_Chr2g0296781 | 86.111 | 144 | 11 | 2 | 163 | 303 | 579 | 716 | 3.61e-66 | 221 |
| Msa1035660 | MtrunA17_Chr6g0476441 | 88.811 | 143 | 7 | 2 | 163 | 302 | 84 | 220 | 4.86e-72 | 224 |
| Msa1035660 | MtrunA17_Chr6g0477261 | 65.000 | 200 | 27 | 4 | 164 | 326 | 469 | 662 | 2.25e-62 | 209 |
| Msa1035660 | MtrunA17_Chr6g0476431 | 85.882 | 85 | 5 | 1 | 36 | 113 | 1 | 85 | 6.45e-44 | 145 |
| Msa1035660 | MtrunA17_Chr3g0077731 | 75.410 | 122 | 19 | 3 | 193 | 309 | 1 | 116 | 7.49e-42 | 141 |
| Msa1035660 | MtrunA17_Chr1g0196541 | 51.079 | 139 | 57 | 2 | 36 | 163 | 1 | 139 | 2.22e-35 | 135 |
| Msa1035660 | MtrunA17_Chr1g0196541 | 47.368 | 152 | 61 | 5 | 165 | 312 | 575 | 711 | 1.26e-23 | 101 |
| Msa1035660 | MtrunA17_Chr6g0451441 | 31.481 | 162 | 94 | 5 | 12 | 158 | 64 | 223 | 2.71e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACACTGCGTTTGAGTTAT+AGG | 0.177962 | 7_1:-71628277 | None:intergenic |
| CCTTTACTTCGAGCTACTTT+AGG | 0.245170 | 7_1:-71630008 | None:intergenic |
| AATGCGTGTATTTATTTAGA+TGG | 0.249459 | 7_1:+71628310 | Msa1035660:CDS |
| TATGCTGAACGGGTGGGTTT+TGG | 0.279098 | 7_1:+71628142 | Msa1035660:CDS |
| TTAGATCGAACAAGAATATA+GGG | 0.302032 | 7_1:+71628401 | Msa1035660:CDS |
| TGCGTTTGAGTTATAGGATT+TGG | 0.304891 | 7_1:-71628271 | None:intergenic |
| CGTTGAAGCAAATTCATAAA+AGG | 0.311900 | 7_1:-71629847 | None:intergenic |
| ATTTGAGTCTATTGATGAAT+TGG | 0.319207 | 7_1:+71628015 | Msa1035660:CDS |
| CAATCTTCTTCTACAATTGT+AGG | 0.328846 | 7_1:-71629954 | None:intergenic |
| TTTAGATCGAACAAGAATAT+AGG | 0.366556 | 7_1:+71628400 | Msa1035660:CDS |
| AAGGGCGTCCTCCTTCTAAA+AGG | 0.371475 | 7_1:+71630027 | Msa1035660:CDS |
| CTAAAATACCTTGCTTTCCC+TGG | 0.410842 | 7_1:-71628382 | None:intergenic |
| CATAATCATGATCTAAGTCC+AGG | 0.436852 | 7_1:+71628364 | Msa1035660:CDS |
| TCTCAACTTGGTGATAGAAT+TGG | 0.438239 | 7_1:+71630279 | Msa1035660:CDS |
| GCAGGCTCCTTATTACTCTC+AGG | 0.438514 | 7_1:+71630906 | Msa1035660:intron |
| CCTTGTGATGGGATGTCATT+CGG | 0.449339 | 7_1:+71628085 | Msa1035660:CDS |
| CCTAAAGTAGCTCGAAGTAA+AGG | 0.460010 | 7_1:+71630008 | Msa1035660:CDS |
| TTACAAGAATTATGCTGAAC+GGG | 0.461474 | 7_1:+71628132 | Msa1035660:CDS |
| GTAGGAGATGTTTCATTACA+TGG | 0.465504 | 7_1:-71629936 | None:intergenic |
| TATAACTCAAACGCAGTGTA+AGG | 0.477984 | 7_1:+71628279 | Msa1035660:CDS |
| AATGATTGTTTAGAAGCAAA+TGG | 0.480295 | 7_1:+71628043 | Msa1035660:CDS |
| TTTATGACCTGAGAGTAATA+AGG | 0.482284 | 7_1:-71630913 | None:intergenic |
| CTAAAGTAGCTCGAAGTAAA+GGG | 0.483371 | 7_1:+71630009 | Msa1035660:CDS |
| TTTGTTGTATTAGTGCAAGA+AGG | 0.490969 | 7_1:+71627992 | Msa1035660:intron |
| TAGGATCAAGAATGGTAGCT+TGG | 0.494392 | 7_1:-71629989 | None:intergenic |
| GATGTCATTCGGATCTGAAA+AGG | 0.494917 | 7_1:+71628096 | Msa1035660:CDS |
| TCCTTTGTCGTTGAAGCAGA+TGG | 0.513029 | 7_1:+71628490 | Msa1035660:CDS |
| AGCTACTTTAGGATCAAGAA+TGG | 0.514436 | 7_1:-71629997 | None:intergenic |
| CTTGACCTCTAGATGTACAT+TGG | 0.528356 | 7_1:-71630230 | None:intergenic |
| ATCTAAGTCCAGGGAAAGCA+AGG | 0.538270 | 7_1:+71628374 | Msa1035660:CDS |
| AAGAATTATGCTGAACGGGT+GGG | 0.547191 | 7_1:+71628136 | Msa1035660:CDS |
| AGCATAATTCTTGTAATACT+CGG | 0.547475 | 7_1:-71628125 | None:intergenic |
| CAAGAATTATGCTGAACGGG+TGG | 0.555569 | 7_1:+71628135 | Msa1035660:CDS |
| TTAGAACTCAATGATCAAGC+TGG | 0.558672 | 7_1:+71628442 | Msa1035660:CDS |
| TAGAACTCAATGATCAAGCT+GGG | 0.577189 | 7_1:+71628443 | Msa1035660:CDS |
| CTGCTTCAACGACAAAGGAT+CGG | 0.586561 | 7_1:-71628486 | None:intergenic |
| AAATATTCAAGTTCAAGAAG+AGG | 0.587967 | 7_1:+71630127 | Msa1035660:CDS |
| ACCATCTGCTTCAACGACAA+AGG | 0.593984 | 7_1:-71628491 | None:intergenic |
| ATAATCATGATCTAAGTCCA+GGG | 0.602115 | 7_1:+71628365 | Msa1035660:CDS |
| ATTACAAGAATTATGCTGAA+CGG | 0.604383 | 7_1:+71628131 | Msa1035660:CDS |
| AAGAAGAAACACCTTGTGAT+GGG | 0.621474 | 7_1:+71628074 | Msa1035660:CDS |
| ATATAGGGGCACAAATGAAG+AGG | 0.627813 | 7_1:+71628416 | Msa1035660:CDS |
| GAAGAAGAAACACCTTGTGA+TGG | 0.629834 | 7_1:+71628073 | Msa1035660:CDS |
| TAGATCGAACAAGAATATAG+GGG | 0.631587 | 7_1:+71628402 | Msa1035660:CDS |
| CCGAATGACATCCCATCACA+AGG | 0.631658 | 7_1:-71628085 | None:intergenic |
| CAGGGCCAATGTACATCTAG+AGG | 0.633528 | 7_1:+71630225 | Msa1035660:intron |
| TAGGGGCACAAATGAAGAGG+AGG | 0.634884 | 7_1:+71628419 | Msa1035660:CDS |
| GCGTCTCTATGATTATTGTG+CGG | 0.646780 | 7_1:-71631102 | None:intergenic |
| TATTGTGCGGATCTTTCATG+TGG | 0.661652 | 7_1:-71631089 | None:intergenic |
| TTTATGAATTTGCTTCAACG+AGG | 0.719121 | 7_1:+71629850 | Msa1035660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAGTTCAAAAAA+AGG | + | chr7_1:71628169-71628188 | Msa1035660:CDS | 10.0% |
| !! | TCATTTAATTAAAAAATGAT+TGG | + | chr7_1:71630631-71630650 | Msa1035660:intron | 10.0% |
| !!! | CCAAAATTTTGAAAAAAAAA+TGG | - | chr7_1:71627305-71627324 | None:intergenic | 15.0% |
| !!! | CCATTTTTTTTTCAAAATTT+TGG | + | chr7_1:71627302-71627321 | Msa1035660:intron | 15.0% |
| !!! | TCAAATACGTAATTTTAAAA+TGG | - | chr7_1:71627415-71627434 | None:intergenic | 15.0% |
| !!! | TAATTTAATTTTCATTTCTC+TGG | - | chr7_1:71627567-71627586 | None:intergenic | 15.0% |
| !! | TAAATGAAAAATCAATCAAT+CGG | - | chr7_1:71627932-71627951 | None:intergenic | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | - | chr7_1:71628761-71628780 | None:intergenic | 15.0% |
| !! | ATTGAAAGATAAAATTGAAA+AGG | + | chr7_1:71629344-71629363 | Msa1035660:intron | 15.0% |
| !!! | CTTGAATATTTTTACTATTT+TGG | - | chr7_1:71630118-71630137 | None:intergenic | 15.0% |
| !!! | GTCTAATTTAAGAATTTTTA+TGG | + | chr7_1:71630202-71630221 | Msa1035660:intron | 15.0% |
| !!! | ATTTTTATAATGAACATAAG+TGG | + | chr7_1:71630866-71630885 | Msa1035660:intron | 15.0% |
| !! | ACATATAAAAAAAAATGGAG+CGG | - | chr7_1:71627374-71627393 | None:intergenic | 20.0% |
| !!! | GTATTTGATGATTTTATGAA+GGG | + | chr7_1:71627455-71627474 | Msa1035660:intron | 20.0% |
| !!! | TGTTTTTATAGATCATTAGT+AGG | + | chr7_1:71627897-71627916 | Msa1035660:intron | 20.0% |
| !! | CTGTGTTAGTTAATTAATAT+AGG | + | chr7_1:71627957-71627976 | Msa1035660:intron | 20.0% |
| !!! | CAATACAAAAATATTTTGTG+AGG | + | chr7_1:71628602-71628621 | Msa1035660:intron | 20.0% |
| !!! | TAAATGTGGTTTTGATAATT+TGG | + | chr7_1:71629782-71629801 | Msa1035660:intron | 20.0% |
| !!! | AATTTAAGAATTTTTATGGC+AGG | + | chr7_1:71630206-71630225 | Msa1035660:intron | 20.0% |
| !!! | ATTTAAGAATTTTTATGGCA+GGG | + | chr7_1:71630207-71630226 | Msa1035660:intron | 20.0% |
| !!! | ATTATAGTTTTTTCTATGAC+AGG | + | chr7_1:71630496-71630515 | Msa1035660:intron | 20.0% |
| !!! | TTATAGTTTTTTCTATGACA+GGG | + | chr7_1:71630497-71630516 | Msa1035660:intron | 20.0% |
| !! | TTAGGTATCAAATTATTGAT+GGG | + | chr7_1:71630564-71630583 | Msa1035660:intron | 20.0% |
| !! | TTAAATGAAAGTAAGAAATC+AGG | - | chr7_1:71630619-71630638 | None:intergenic | 20.0% |
| !! | GTTAATTATATATTCTTTGC+AGG | + | chr7_1:71630888-71630907 | Msa1035660:intron | 20.0% |
| ! | AAAGGAAAATGAAAGTTAAG+CGG | - | chr7_1:71627344-71627363 | None:intergenic | 25.0% |
| ! | CATATAAAAAAAAATGGAGC+GGG | - | chr7_1:71627373-71627392 | None:intergenic | 25.0% |
| ! | AATCATCAAATACGTAATAG+AGG | - | chr7_1:71627448-71627467 | None:intergenic | 25.0% |
| !!! | CGTATTTGATGATTTTATGA+AGG | + | chr7_1:71627454-71627473 | Msa1035660:intron | 25.0% |
| ! | TTATGAAGGGAAATGATAAT+TGG | + | chr7_1:71627468-71627487 | Msa1035660:intron | 25.0% |
| !!! | TGTTTTGACAAGAATAAACA+CGG | + | chr7_1:71627497-71627516 | Msa1035660:intron | 25.0% |
| !!! | AAGGGTATCATTTCTATTAA+AGG | - | chr7_1:71627607-71627626 | None:intergenic | 25.0% |
| ! | ATTTGAGTCTATTGATGAAT+TGG | + | chr7_1:71628015-71628034 | Msa1035660:CDS | 25.0% |
| ! | AATGATTGTTTAGAAGCAAA+TGG | + | chr7_1:71628043-71628062 | Msa1035660:CDS | 25.0% |
| ! | AGCATAATTCTTGTAATACT+CGG | - | chr7_1:71628128-71628147 | None:intergenic | 25.0% |
| ! | ATTACAAGAATTATGCTGAA+CGG | + | chr7_1:71628131-71628150 | Msa1035660:CDS | 25.0% |
| ! | AATGCGTGTATTTATTTAGA+TGG | + | chr7_1:71628310-71628329 | Msa1035660:CDS | 25.0% |
| ! | TTTAGATCGAACAAGAATAT+AGG | + | chr7_1:71628400-71628419 | Msa1035660:CDS | 25.0% |
| ! | TTAGATCGAACAAGAATATA+GGG | + | chr7_1:71628401-71628420 | Msa1035660:CDS | 25.0% |
| !! | CAGTCAATTTTATTATGTGA+TGG | + | chr7_1:71628639-71628658 | Msa1035660:intron | 25.0% |
| !!! | ATTTTATTATGTGATGGATG+TGG | + | chr7_1:71628645-71628664 | Msa1035660:intron | 25.0% |
| !! | TTACTTGGTTATTTAAGACA+TGG | + | chr7_1:71628875-71628894 | Msa1035660:intron | 25.0% |
| ! | AAAAAGATTCCAGAAAAGTT+TGG | + | chr7_1:71629021-71629040 | Msa1035660:intron | 25.0% |
| ! | ATTTCTTGTATTAGTCACTT+TGG | + | chr7_1:71629402-71629421 | Msa1035660:intron | 25.0% |
| !!! | TGGTAAATGCTTTTTGAAAT+TGG | - | chr7_1:71629437-71629456 | None:intergenic | 25.0% |
| ! | ATTTACCAATGCAAAGTTTA+AGG | + | chr7_1:71629449-71629468 | Msa1035660:intron | 25.0% |
| ! | AAAGTTTAAGGAATTCCAAT+TGG | + | chr7_1:71629461-71629480 | Msa1035660:intron | 25.0% |
| ! | GATGAAAGATATTATGTTCA+TGG | + | chr7_1:71629581-71629600 | Msa1035660:intron | 25.0% |
| !!! | CATCTAATTATATTTTGGCA+CGG | + | chr7_1:71629724-71629743 | Msa1035660:intron | 25.0% |
| ! | AGGTATACACTTATTAAATG+TGG | + | chr7_1:71629768-71629787 | Msa1035660:intron | 25.0% |
| !! | AAATATTCAAGTTCAAGAAG+AGG | + | chr7_1:71630127-71630146 | Msa1035660:CDS | 25.0% |
| ! | ATATAACCATTCAACCATTT+AGG | - | chr7_1:71630419-71630438 | None:intergenic | 25.0% |
| ! | CTTAGGTATCAAATTATTGA+TGG | + | chr7_1:71630563-71630582 | Msa1035660:intron | 25.0% |
| !! | AATCCAAATCAAGAACATTT+TGG | + | chr7_1:71630788-71630807 | Msa1035660:intron | 25.0% |
| ! | TGTATGAAAATACAATCTGT+TGG | + | chr7_1:71630990-71631009 | Msa1035660:intron | 25.0% |
| CTGTATAAAAAGTAGCAGTT+TGG | + | chr7_1:71627277-71627296 | Msa1035660:intron | 30.0% | |
| AAGGAAAATGAAAGTTAAGC+GGG | - | chr7_1:71627343-71627362 | None:intergenic | 30.0% | |
| AAGGGAAATGATAATTGGTA+CGG | + | chr7_1:71627473-71627492 | Msa1035660:intron | 30.0% | |
| ! | TTTGTTGTATTAGTGCAAGA+AGG | + | chr7_1:71627992-71628011 | Msa1035660:intron | 30.0% |
| TTACAAGAATTATGCTGAAC+GGG | + | chr7_1:71628132-71628151 | Msa1035660:CDS | 30.0% | |
| AAGTTCAAAAAAAGGAGATG+AGG | + | chr7_1:71628177-71628196 | Msa1035660:CDS | 30.0% | |
| AGTTCAAAAAAAGGAGATGA+GGG | + | chr7_1:71628178-71628197 | Msa1035660:CDS | 30.0% | |
| ATAATCATGATCTAAGTCCA+GGG | + | chr7_1:71628365-71628384 | Msa1035660:CDS | 30.0% | |
| TAGATCGAACAAGAATATAG+GGG | + | chr7_1:71628402-71628421 | Msa1035660:CDS | 30.0% | |
| GGTTATGAAAATCTCACATT+TGG | + | chr7_1:71628511-71628530 | Msa1035660:intron | 30.0% | |
| ! | AGGGTTGCATATGAATATTT+TGG | + | chr7_1:71628715-71628734 | Msa1035660:intron | 30.0% |
| TGATGATTTACTCCAACAAA+AGG | - | chr7_1:71628799-71628818 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+CGG | + | chr7_1:71628799-71628818 | Msa1035660:intron | 30.0% | |
| ! | AGGATACTGAAACTTTTACT+TGG | + | chr7_1:71628860-71628879 | Msa1035660:intron | 30.0% |
| ! | TTGGTTATTTAAGACATGGT+TGG | + | chr7_1:71628879-71628898 | Msa1035660:intron | 30.0% |
| ! | ACAAACTACATGATAACGAA+TGG | + | chr7_1:71629151-71629170 | Msa1035660:intron | 30.0% |
| ! | ATATGTAAGGGACACATTTT+GGG | + | chr7_1:71629215-71629234 | Msa1035660:intron | 30.0% |
| !!! | AGTATGAACTCGTTTTTTGA+TGG | + | chr7_1:71629267-71629286 | Msa1035660:intron | 30.0% |
| GAATTCCTTAAACTTTGCAT+TGG | - | chr7_1:71629457-71629476 | None:intergenic | 30.0% | |
| ! | TCATAGAAGCTATTTCCAAT+TGG | - | chr7_1:71629479-71629498 | None:intergenic | 30.0% |
| TTTAAATTCAAACAAGCAGC+AGG | - | chr7_1:71629643-71629662 | None:intergenic | 30.0% | |
| ! | TGCTGCTTGTTTGAATTTAA+AGG | + | chr7_1:71629642-71629661 | Msa1035660:intron | 30.0% |
| ! | CGTGCCATCTAATTATATTT+TGG | + | chr7_1:71629719-71629738 | Msa1035660:intron | 30.0% |
| CGTGCCAAAATATAATTAGA+TGG | - | chr7_1:71629726-71629745 | None:intergenic | 30.0% | |
| CGTTGAAGCAAATTCATAAA+AGG | - | chr7_1:71629850-71629869 | None:intergenic | 30.0% | |
| ! | TTTATGAATTTGCTTCAACG+AGG | + | chr7_1:71629850-71629869 | Msa1035660:CDS | 30.0% |
| CAATCTTCTTCTACAATTGT+AGG | - | chr7_1:71629957-71629976 | None:intergenic | 30.0% | |
| ! | ATAGAAGTCTTCCTTTTAGA+AGG | - | chr7_1:71630041-71630060 | None:intergenic | 30.0% |
| ATATACTAGTCATGCAAATC+AGG | + | chr7_1:71630332-71630351 | Msa1035660:intron | 30.0% | |
| GGTGCAAATATAAGATTCAT+TGG | + | chr7_1:71630353-71630372 | Msa1035660:intron | 30.0% | |
| CTACAAATGAAGAGTTTCTT+AGG | + | chr7_1:71630546-71630565 | Msa1035660:intron | 30.0% | |
| TATCAAATTATTGATGGGAC+TGG | + | chr7_1:71630569-71630588 | Msa1035660:intron | 30.0% | |
| ATCAAATTATTGATGGGACT+GGG | + | chr7_1:71630570-71630589 | Msa1035660:intron | 30.0% | |
| TGCATGTTAATATCTATACC+AGG | + | chr7_1:71630709-71630728 | Msa1035660:intron | 30.0% | |
| TATGTTTGTAGCAGTGAAAA+TGG | + | chr7_1:71630740-71630759 | Msa1035660:intron | 30.0% | |
| TGACCAAAATGTTCTTGATT+TGG | - | chr7_1:71630794-71630813 | None:intergenic | 30.0% | |
| !! | ACATTTTGGTCAAGTAAACA+AGG | + | chr7_1:71630802-71630821 | Msa1035660:intron | 30.0% |
| ! | CAAGGTGCAAATATAGATTT+TGG | + | chr7_1:71630820-71630839 | Msa1035660:intron | 30.0% |
| TTTATGACCTGAGAGTAATA+AGG | - | chr7_1:71630916-71630935 | None:intergenic | 30.0% | |
| AATCAGAACAAGTAGCATTA+TGG | - | chr7_1:71630939-71630958 | None:intergenic | 30.0% | |
| !! | TACTTGTTCTGATTTGTTAC+AGG | + | chr7_1:71630945-71630964 | Msa1035660:intron | 30.0% |
| !!! | TCTGTTGGTTTTTTATTGTG+TGG | + | chr7_1:71631005-71631024 | Msa1035660:intron | 30.0% |
| !!! | CTGTTGGTTTTTTATTGTGT+GGG | + | chr7_1:71631006-71631025 | Msa1035660:intron | 30.0% |
| ! | TAATCCCTTTCTCTTTTTCT+AGG | + | chr7_1:71631059-71631078 | Msa1035660:intron | 30.0% |
| TGTTCCTAGAAAAAGAGAAA+GGG | - | chr7_1:71631066-71631085 | None:intergenic | 30.0% | |
| TTGTTCCTAGAAAAAGAGAA+AGG | - | chr7_1:71631067-71631086 | None:intergenic | 30.0% | |
| !!! | CGTAGCTTTGTTTTTGTGAA+GGG | - | chr7_1:71627625-71627644 | None:intergenic | 35.0% |
| !!! | ACGTAGCTTTGTTTTTGTGA+AGG | - | chr7_1:71627626-71627645 | None:intergenic | 35.0% |
| ! | TCAATCAGTCTTTGATTCGT+GGG | - | chr7_1:71627680-71627699 | None:intergenic | 35.0% |
| ! | TTCAATCAGTCTTTGATTCG+TGG | - | chr7_1:71627681-71627700 | None:intergenic | 35.0% |
| ATATGAGATCTGATTCACAG+AGG | - | chr7_1:71627763-71627782 | None:intergenic | 35.0% | |
| TGAATCAATGGATGTTGTGA+TGG | - | chr7_1:71627815-71627834 | None:intergenic | 35.0% | |
| GCTTTAGTGCTATGAATCAA+TGG | - | chr7_1:71627827-71627846 | None:intergenic | 35.0% | |
| AAGAAGAAACACCTTGTGAT+GGG | + | chr7_1:71628074-71628093 | Msa1035660:CDS | 35.0% | |
| GTTCAAAAAAAGGAGATGAG+GGG | + | chr7_1:71628179-71628198 | Msa1035660:CDS | 35.0% | |
| ! | TGCGTTTGAGTTATAGGATT+TGG | - | chr7_1:71628274-71628293 | None:intergenic | 35.0% |
| ! | TTACACTGCGTTTGAGTTAT+AGG | - | chr7_1:71628280-71628299 | None:intergenic | 35.0% |
| TATAACTCAAACGCAGTGTA+AGG | + | chr7_1:71628279-71628298 | Msa1035660:CDS | 35.0% | |
| CATAATCATGATCTAAGTCC+AGG | + | chr7_1:71628364-71628383 | Msa1035660:CDS | 35.0% | |
| TTAGAACTCAATGATCAAGC+TGG | + | chr7_1:71628442-71628461 | Msa1035660:CDS | 35.0% | |
| TAGAACTCAATGATCAAGCT+GGG | + | chr7_1:71628443-71628462 | Msa1035660:CDS | 35.0% | |
| ! | TCGGTTACGAAATGTGTTTT+GGG | + | chr7_1:71628678-71628697 | Msa1035660:intron | 35.0% |
| TGATCAGTGATTATGGCATT+TGG | - | chr7_1:71628925-71628944 | None:intergenic | 35.0% | |
| TCTGTCTTGATCAGTGATTA+TGG | - | chr7_1:71628932-71628951 | None:intergenic | 35.0% | |
| ! | CCTCGTCATAAAATCACTTT+TGG | - | chr7_1:71629109-71629128 | None:intergenic | 35.0% |
| ! | CCAAAAGTGATTTTATGACG+AGG | + | chr7_1:71629106-71629125 | Msa1035660:intron | 35.0% |
| ! | AAAGTGATTTTATGACGAGG+TGG | + | chr7_1:71629109-71629128 | Msa1035660:intron | 35.0% |
| ! | AAGTGATTTTATGACGAGGT+GGG | + | chr7_1:71629110-71629129 | Msa1035660:intron | 35.0% |
| ! | ATGATAACGAATGGCTGAAA+GGG | + | chr7_1:71629160-71629179 | Msa1035660:intron | 35.0% |
| ! | CATATGTAAGGGACACATTT+TGG | + | chr7_1:71629214-71629233 | Msa1035660:intron | 35.0% |
| TCATGCATGTTTCAACAGAT+TGG | + | chr7_1:71629506-71629525 | Msa1035660:intron | 35.0% | |
| TTTGTGTGCTTAAGCTCATA+GGG | + | chr7_1:71629685-71629704 | Msa1035660:intron | 35.0% | |
| !!! | CTAATTATATTTTGGCACGG+TGG | + | chr7_1:71629727-71629746 | Msa1035660:intron | 35.0% |
| !!! | TGTGGTTTTGATAATTTGGC+TGG | + | chr7_1:71629786-71629805 | Msa1035660:intron | 35.0% |
| AAAACTGAATTGCAACGTGT+AGG | + | chr7_1:71629810-71629829 | Msa1035660:intron | 35.0% | |
| GTAGGAGATGTTTCATTACA+TGG | - | chr7_1:71629939-71629958 | None:intergenic | 35.0% | |
| !! | AGCTACTTTAGGATCAAGAA+TGG | - | chr7_1:71630000-71630019 | None:intergenic | 35.0% |
| CTAAAGTAGCTCGAAGTAAA+GGG | + | chr7_1:71630009-71630028 | Msa1035660:CDS | 35.0% | |
| ! | GTGTTTTACAGATCTCAACT+TGG | + | chr7_1:71630267-71630286 | Msa1035660:CDS | 35.0% |
| ! | TCTCAACTTGGTGATAGAAT+TGG | + | chr7_1:71630279-71630298 | Msa1035660:CDS | 35.0% |
| AGTGTGAACATAGTCCTAAA+TGG | + | chr7_1:71630402-71630421 | Msa1035660:intron | 35.0% | |
| CATAGTCCTAAATGGTTGAA+TGG | + | chr7_1:71630410-71630429 | Msa1035660:intron | 35.0% | |
| GTTAAGCGGGAACTGAAAAA+AGG | - | chr7_1:71627330-71627349 | None:intergenic | 40.0% | |
| AAATGGAGCGGGAAAGAAAA+AGG | - | chr7_1:71627362-71627381 | None:intergenic | 40.0% | |
| TGGGAAAGAGGAAACAATTG+CGG | - | chr7_1:71627661-71627680 | None:intergenic | 40.0% | |
| AGCTGAAACAGAGTTATGTG+AGG | - | chr7_1:71627790-71627809 | None:intergenic | 40.0% | |
| GAAGAAGAAACACCTTGTGA+TGG | + | chr7_1:71628073-71628092 | Msa1035660:CDS | 40.0% | |
| GATGTCATTCGGATCTGAAA+AGG | + | chr7_1:71628096-71628115 | Msa1035660:CDS | 40.0% | |
| AAGAATTATGCTGAACGGGT+GGG | + | chr7_1:71628136-71628155 | Msa1035660:CDS | 40.0% | |
| CTAAAATACCTTGCTTTCCC+TGG | - | chr7_1:71628385-71628404 | None:intergenic | 40.0% | |
| ! | ATATAGGGGCACAAATGAAG+AGG | + | chr7_1:71628416-71628435 | Msa1035660:CDS | 40.0% |
| AAAGCAAGACAACTACGACT+TGG | + | chr7_1:71628562-71628581 | Msa1035660:intron | 40.0% | |
| AAGCAAGACAACTACGACTT+GGG | + | chr7_1:71628563-71628582 | Msa1035660:intron | 40.0% | |
| TGGATGTGGATGATGAAAGT+CGG | + | chr7_1:71628659-71628678 | Msa1035660:intron | 40.0% | |
| ! | GTCGGTTACGAAATGTGTTT+TGG | + | chr7_1:71628677-71628696 | Msa1035660:intron | 40.0% |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | + | chr7_1:71628784-71628803 | Msa1035660:intron | 40.0% |
| ACTCCAACAAAAGGAGCAAA+AGG | - | chr7_1:71628790-71628809 | None:intergenic | 40.0% | |
| TTGTGCTCTGTTGTCAAATG+AGG | + | chr7_1:71628840-71628859 | Msa1035660:intron | 40.0% | |
| ACATGGTTGGAATGTATGCA+TGG | + | chr7_1:71628892-71628911 | Msa1035660:intron | 40.0% | |
| ! | CATGATAACGAATGGCTGAA+AGG | + | chr7_1:71629159-71629178 | Msa1035660:intron | 40.0% |
| ! | TATTTGTTGAGCGACATCGT+TGG | + | chr7_1:71629184-71629203 | Msa1035660:intron | 40.0% |
| ! | ATTTGTTGAGCGACATCGTT+GGG | + | chr7_1:71629185-71629204 | Msa1035660:intron | 40.0% |
| ATGTGTCCCTTACATATGCA+GGG | - | chr7_1:71629212-71629231 | None:intergenic | 40.0% | |
| AATGTGTCCCTTACATATGC+AGG | - | chr7_1:71629213-71629232 | None:intergenic | 40.0% | |
| TGCATGTTTCAACAGATTGG+AGG | + | chr7_1:71629509-71629528 | Msa1035660:intron | 40.0% | |
| GCATGTTTCAACAGATTGGA+GGG | + | chr7_1:71629510-71629529 | Msa1035660:intron | 40.0% | |
| TTTCAACAGATTGGAGGGTT+TGG | + | chr7_1:71629515-71629534 | Msa1035660:intron | 40.0% | |
| CTATGAGCTTAAGCACACAA+AGG | - | chr7_1:71629686-71629705 | None:intergenic | 40.0% | |
| CTTTGTGTGCTTAAGCTCAT+AGG | + | chr7_1:71629684-71629703 | Msa1035660:intron | 40.0% | |
| !!! | ATTATATTTTGGCACGGTGG+AGG | + | chr7_1:71629730-71629749 | Msa1035660:intron | 40.0% |
| TAGGATCAAGAATGGTAGCT+TGG | - | chr7_1:71629992-71630011 | None:intergenic | 40.0% | |
| ! | CCTTTACTTCGAGCTACTTT+AGG | - | chr7_1:71630011-71630030 | None:intergenic | 40.0% |
| CCTAAAGTAGCTCGAAGTAA+AGG | + | chr7_1:71630008-71630027 | Msa1035660:CDS | 40.0% | |
| !! | GAAGTCTTCCTTTTAGAAGG+AGG | - | chr7_1:71630038-71630057 | None:intergenic | 40.0% |
| CTTGACCTCTAGATGTACAT+TGG | - | chr7_1:71630233-71630252 | None:intergenic | 40.0% | |
| ! | TACAAACATAGTTCTGCTCC+TGG | - | chr7_1:71630730-71630749 | None:intergenic | 40.0% |
| TATTGTGCGGATCTTTCATG+TGG | - | chr7_1:71631092-71631111 | None:intergenic | 40.0% | |
| GCGTCTCTATGATTATTGTG+CGG | - | chr7_1:71631105-71631124 | None:intergenic | 40.0% | |
| AAAGAGGAAACAATTGCGGC+GGG | - | chr7_1:71627657-71627676 | None:intergenic | 45.0% | |
| GAAAGAGGAAACAATTGCGG+CGG | - | chr7_1:71627658-71627677 | None:intergenic | 45.0% | |
| ! | GTCTTTGATTCGTGGGAAAG+AGG | - | chr7_1:71627673-71627692 | None:intergenic | 45.0% |
| ! | CCTTGTGATGGGATGTCATT+CGG | + | chr7_1:71628085-71628104 | Msa1035660:CDS | 45.0% |
| CAAGAATTATGCTGAACGGG+TGG | + | chr7_1:71628135-71628154 | Msa1035660:CDS | 45.0% | |
| ATCTAAGTCCAGGGAAAGCA+AGG | + | chr7_1:71628374-71628393 | Msa1035660:CDS | 45.0% | |
| CTGCTTCAACGACAAAGGAT+CGG | - | chr7_1:71628489-71628508 | None:intergenic | 45.0% | |
| TCCTTTGTCGTTGAAGCAGA+TGG | + | chr7_1:71628490-71628509 | Msa1035660:CDS | 45.0% | |
| ACCATCTGCTTCAACGACAA+AGG | - | chr7_1:71628494-71628513 | None:intergenic | 45.0% | |
| TTTGGGCAGATGCAAGATGT+AGG | + | chr7_1:71628695-71628714 | Msa1035660:intron | 45.0% | |
| TTGGGCAGATGCAAGATGTA+GGG | + | chr7_1:71628696-71628715 | Msa1035660:intron | 45.0% | |
| TCACGGTCAGTCTATGTTGT+TGG | + | chr7_1:71628816-71628835 | Msa1035660:intron | 45.0% | |
| CACGGTCAGTCTATGTTGTT+GGG | + | chr7_1:71628817-71628836 | Msa1035660:intron | 45.0% | |
| TCTTTCCGAAAGCTCGTCAT+CGG | + | chr7_1:71628977-71628996 | Msa1035660:intron | 45.0% | |
| ! | GAGTGGCTACCAAACTTTTC+TGG | - | chr7_1:71629033-71629052 | None:intergenic | 45.0% |
| TGATAGACTCGTAGTCAGAG+TGG | - | chr7_1:71629050-71629069 | None:intergenic | 45.0% | |
| TTGGGTCCCTGCATATGTAA+GGG | + | chr7_1:71629203-71629222 | Msa1035660:intron | 45.0% | |
| GGTGGAGGAAGGATATAAAG+CGG | + | chr7_1:71629745-71629764 | Msa1035660:intron | 45.0% | |
| !! | AAAATACATATAAAAAAAAA+TGG | - | chr7_1:71627379-71627398 | None:intergenic | 5.0% |
| !!! | TTTTTTTATATGTATTTTTT+AGG | + | chr7_1:71627381-71627400 | Msa1035660:intron | 5.0% |
| GAAACTACAGCGCGTGGAAT+TGG | - | chr7_1:71627537-71627556 | None:intergenic | 50.0% | |
| CCGAATGACATCCCATCACA+AGG | - | chr7_1:71628088-71628107 | None:intergenic | 50.0% | |
| !! | TATGCTGAACGGGTGGGTTT+TGG | + | chr7_1:71628142-71628161 | Msa1035660:CDS | 50.0% |
| ! | TAGGGGCACAAATGAAGAGG+AGG | + | chr7_1:71628419-71628438 | Msa1035660:CDS | 50.0% |
| ! | AGACAACTACGACTTGGGAC+AGG | + | chr7_1:71628568-71628587 | Msa1035660:intron | 50.0% |
| GTTGGGTCCCTGCATATGTA+AGG | + | chr7_1:71629202-71629221 | Msa1035660:intron | 50.0% | |
| ! | GTAAGGGACACATTTTGGGC+TGG | + | chr7_1:71629219-71629238 | Msa1035660:intron | 50.0% |
| !!! | TATTTTGGCACGGTGGAGGA+AGG | + | chr7_1:71629734-71629753 | Msa1035660:intron | 50.0% |
| GGAGGAAGGATATAAAGCGG+AGG | + | chr7_1:71629748-71629767 | Msa1035660:intron | 50.0% | |
| !! | AAGGGCGTCCTCCTTCTAAA+AGG | + | chr7_1:71630027-71630046 | Msa1035660:CDS | 50.0% |
| CAGGGCCAATGTACATCTAG+AGG | + | chr7_1:71630225-71630244 | Msa1035660:intron | 50.0% | |
| GCAGGCTCCTTATTACTCTC+AGG | + | chr7_1:71630906-71630925 | Msa1035660:intron | 50.0% | |
| CAGTGAGAAACTACAGCGCG+TGG | - | chr7_1:71627543-71627562 | None:intergenic | 55.0% | |
| TTCCGAAAGCTCGTCATCGG+TGG | + | chr7_1:71628980-71628999 | Msa1035660:intron | 55.0% | |
| CACCACCGATGACGAGCTTT+CGG | - | chr7_1:71628985-71629004 | None:intergenic | 55.0% | |
| CTCGTCATCGGTGGTGCTTA+TGG | + | chr7_1:71628989-71629008 | Msa1035660:intron | 55.0% | |
| GGAAACAATTGCGGCGGGAG+TGG | - | chr7_1:71627652-71627671 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 71627233 | 71631131 | 71627233 | ID=Msa1035660;Name=Msa1035660 |
| chr7_1 | mRNA | 71627233 | 71631131 | 71627233 | ID=Msa1035660-mRNA-1;Parent=Msa1035660;Name=Msa1035660-mRNA-1;_AED=0.26;_eAED=0.37;_QI=0|0|0|0.81|0.2|0.27|11|0|326 |
| chr7_1 | exon | 71627233 | 71627238 | 71627233 | ID=Msa1035660-mRNA-1:exon:17297;Parent=Msa1035660-mRNA-1 |
| chr7_1 | exon | 71627908 | 71627914 | 71627908 | ID=Msa1035660-mRNA-1:exon:17298;Parent=Msa1035660-mRNA-1 |
| chr7_1 | exon | 71628005 | 71628206 | 71628005 | ID=Msa1035660-mRNA-1:exon:17299;Parent=Msa1035660-mRNA-1 |
| chr7_1 | exon | 71628228 | 71628351 | 71628228 | ID=Msa1035660-mRNA-1:exon:17300;Parent=Msa1035660-mRNA-1 |
| chr7_1 | exon | 71628364 | 71628511 | 71628364 | ID=Msa1035660-mRNA-1:exon:17301;Parent=Msa1035660-mRNA-1 |
| chr7_1 | exon | 71629832 | 71630061 | 71629832 | ID=Msa1035660-mRNA-1:exon:17302;Parent=Msa1035660-mRNA-1 |
| chr7_1 | exon | 71630071 | 71630166 | 71630071 | ID=Msa1035660-mRNA-1:exon:17303;Parent=Msa1035660-mRNA-1 |
| chr7_1 | exon | 71630228 | 71630320 | 71630228 | ID=Msa1035660-mRNA-1:exon:17304;Parent=Msa1035660-mRNA-1 |
| chr7_1 | exon | 71630910 | 71630927 | 71630910 | ID=Msa1035660-mRNA-1:exon:17305;Parent=Msa1035660-mRNA-1 |
| chr7_1 | exon | 71630967 | 71630972 | 71630967 | ID=Msa1035660-mRNA-1:exon:17306;Parent=Msa1035660-mRNA-1 |
| chr7_1 | exon | 71631081 | 71631131 | 71631081 | ID=Msa1035660-mRNA-1:exon:17307;Parent=Msa1035660-mRNA-1 |
| chr7_1 | CDS | 71627233 | 71627238 | 71627233 | ID=Msa1035660-mRNA-1:cds;Parent=Msa1035660-mRNA-1 |
| chr7_1 | CDS | 71627908 | 71627914 | 71627908 | ID=Msa1035660-mRNA-1:cds;Parent=Msa1035660-mRNA-1 |
| chr7_1 | CDS | 71628005 | 71628206 | 71628005 | ID=Msa1035660-mRNA-1:cds;Parent=Msa1035660-mRNA-1 |
| chr7_1 | CDS | 71628228 | 71628351 | 71628228 | ID=Msa1035660-mRNA-1:cds;Parent=Msa1035660-mRNA-1 |
| chr7_1 | CDS | 71628364 | 71628511 | 71628364 | ID=Msa1035660-mRNA-1:cds;Parent=Msa1035660-mRNA-1 |
| chr7_1 | CDS | 71629832 | 71630061 | 71629832 | ID=Msa1035660-mRNA-1:cds;Parent=Msa1035660-mRNA-1 |
| chr7_1 | CDS | 71630071 | 71630166 | 71630071 | ID=Msa1035660-mRNA-1:cds;Parent=Msa1035660-mRNA-1 |
| chr7_1 | CDS | 71630228 | 71630320 | 71630228 | ID=Msa1035660-mRNA-1:cds;Parent=Msa1035660-mRNA-1 |
| chr7_1 | CDS | 71630910 | 71630927 | 71630910 | ID=Msa1035660-mRNA-1:cds;Parent=Msa1035660-mRNA-1 |
| chr7_1 | CDS | 71630967 | 71630972 | 71630967 | ID=Msa1035660-mRNA-1:cds;Parent=Msa1035660-mRNA-1 |
| chr7_1 | CDS | 71631081 | 71631131 | 71631081 | ID=Msa1035660-mRNA-1:cds;Parent=Msa1035660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
