AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165540 MtrunA17_Chr6g0476441 91.489 188 9 1 152 332 33 220 5.80e-112 328
Msa1165540 MtrunA17_Chr2g0296781 89.947 189 12 1 152 333 528 716 3.21e-105 325
Msa1165540 MtrunA17_Chr2g0296781 90.400 125 5 1 34 151 1 125 1.85e-69 231
Msa1165540 MtrunA17_Chr6g0477261 71.951 246 39 4 152 367 417 662 7.71e-102 314
Msa1165540 MtrunA17_Chr1g0196541 54.839 217 73 6 152 359 528 728 3.62e-56 195
Msa1165540 MtrunA17_Chr1g0196541 52.800 125 52 1 34 151 1 125 1.94e-33 131
Msa1165540 MtrunA17_Chr3g0077731 80.172 116 21 1 226 339 1 116 5.80e-47 155
Msa1165540 MtrunA17_Chr6g0476431 85.227 88 6 1 34 114 1 88 2.43e-45 150
Msa1165540 MtrunA17_Chr6g0451441 31.579 152 91 4 10 150 64 213 2.35e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165540 AT1G76320.2 34.259 108 63 2 34 133 1 108 6.90e-11 64.3
Msa1165540 AT1G76320.1 34.259 108 63 2 34 133 1 108 6.91e-11 64.3
Msa1165540 AT1G76320.4 34.259 108 63 2 34 133 1 108 6.91e-11 64.3
Msa1165540 AT1G76320.3 34.259 108 63 2 34 133 1 108 7.01e-11 64.3

Find 56 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGCCATCTAATTATATTT+TGG 0.139147 7_4:-57492382 Msa1165540:CDS
TTACACTGCGTTTGAGTTAT+AGG 0.177962 7_4:+57493824 None:intergenic
CCTTTACTTCGAGCTACTTT+AGG 0.245170 7_4:+57492093 None:intergenic
AATGCTTGTATTTATTTAGA+TGG 0.249459 7_4:-57493791 Msa1165540:CDS
TATGCTGAACGGGTGGGTTT+TGG 0.279098 7_4:-57493959 Msa1165540:CDS
CTTTGTGTGCTTAAGCTCAT+AGG 0.292164 7_4:-57492417 Msa1165540:CDS
AATCAAAACAAGTAGCATTA+TGG 0.298354 7_4:+57491165 None:intergenic
TTAGATCGAACAAGAATATA+GGG 0.302032 7_4:-57493700 Msa1165540:CDS
TGCGTTTGAGTTATAGGATT+TGG 0.304891 7_4:+57493830 None:intergenic
CGTTGAAGCAAATTCATAAA+AGG 0.311900 7_4:+57492254 None:intergenic
ATTTGAGTCTATTGATGAAT+TGG 0.319207 7_4:-57494086 Msa1165540:CDS
CAATCTTCTTCTACAATTGT+AGG 0.328846 7_4:+57492147 None:intergenic
TTTAGATCGAACAAGAATAT+AGG 0.366556 7_4:-57493701 Msa1165540:CDS
AAGGGCGTCCTCCTTCTAAA+AGG 0.371475 7_4:-57492074 Msa1165540:CDS
CTAAAATACCTTGCTTTCCC+TGG 0.410842 7_4:+57493719 None:intergenic
TCTCAACTTGGTGATAGAAT+TGG 0.438239 7_4:-57491822 Msa1165540:CDS
GCAGGCTCCTTATTACTCTC+AGG 0.438514 7_4:-57491195 Msa1165540:intron
CCTTGTGATGGGATGTCATT+CGG 0.449339 7_4:-57494016 Msa1165540:CDS
CGTGCCAAAATATAATTAGA+TGG 0.452638 7_4:+57492378 None:intergenic
CATAATCATGATCTAAGTCC+AGG 0.457184 7_4:-57493737 Msa1165540:CDS
CCTAAAGTAGCTCGAAGTAA+AGG 0.460010 7_4:-57492093 Msa1165540:CDS
TTACAAGAATTATGCTGAAC+GGG 0.461474 7_4:-57493969 Msa1165540:CDS
GTAGGAGATGTTTCATTACA+TGG 0.465504 7_4:+57492165 None:intergenic
TATAACTCAAACGCAGTGTA+AGG 0.477984 7_4:-57493822 Msa1165540:CDS
AATGATTGTTTAGAAGCAAA+TGG 0.480295 7_4:-57494058 Msa1165540:CDS
TTTATGACCTGAGAGTAATA+AGG 0.482284 7_4:+57491188 None:intergenic
CTAAAGTAGCTCGAAGTAAA+GGG 0.483371 7_4:-57492092 Msa1165540:CDS
TTTGTGTGCTTAAGCTCATA+GGG 0.489887 7_4:-57492416 Msa1165540:CDS
TTTGTTGTATTAGTGCAAGA+AGG 0.490969 7_4:-57494109 Msa1165540:intron
TAGGATCAAGAATGGTAGCT+TGG 0.494392 7_4:+57492112 None:intergenic
GATGTCATTCGGATCTGAAA+AGG 0.494917 7_4:-57494005 Msa1165540:CDS
AGCTACTTTAGGATCAAGAA+TGG 0.514436 7_4:+57492104 None:intergenic
CTTGACCTCTAGATGTACAT+TGG 0.528356 7_4:+57491871 None:intergenic
ATCTAAGTCCAGGGAAAGCA+AGG 0.538270 7_4:-57493727 Msa1165540:CDS
AAGAATTATGCTGAACGGGT+GGG 0.547191 7_4:-57493965 Msa1165540:CDS
AGCATAATTCTTGTAATACT+CGG 0.547475 7_4:+57493976 None:intergenic
AGGTATACACTTATTAAATG+TGG 0.553433 7_4:-57492333 Msa1165540:CDS
CAAGAATTATGCTGAACGGG+TGG 0.555569 7_4:-57493966 Msa1165540:CDS
TTAGAACTCAATGATCAAGC+TGG 0.558672 7_4:-57493659 Msa1165540:CDS
TAGAACTCAATGATCAAGCT+GGG 0.577189 7_4:-57493658 Msa1165540:CDS
AAATATTCAAGTTCAAGAAG+AGG 0.587967 7_4:-57491974 Msa1165540:intron
TATTGTGCTGATCTTTCATG+TGG 0.602890 7_4:+57491012 None:intergenic
ATTACAAGAATTATGCTGAA+CGG 0.604383 7_4:-57493970 Msa1165540:CDS
AAGAAGAAACACCTTGTGAT+GGG 0.621474 7_4:-57494027 Msa1165540:CDS
ATATAGGGGCACAAATGAAG+AGG 0.627813 7_4:-57493685 Msa1165540:CDS
GAAGAAGAAACACCTTGTGA+TGG 0.629834 7_4:-57494028 Msa1165540:CDS
TAGATCGAACAAGAATATAG+GGG 0.631587 7_4:-57493699 Msa1165540:CDS
CCGAATGACATCCCATCACA+AGG 0.631658 7_4:+57494016 None:intergenic
CAGGGCCAATGTACATCTAG+AGG 0.633528 7_4:-57491876 Msa1165540:CDS
TAGGGGCACAAATGAAGAGG+AGG 0.634884 7_4:-57493682 Msa1165540:CDS
ATAATCATGATCTAAGTCCA+GGG 0.638934 7_4:-57493736 Msa1165540:CDS
AAAACTGAATTGCAACGTGT+AGG 0.640613 7_4:-57492291 Msa1165540:CDS
CTATGAGCTTAAGCACACAA+AGG 0.703144 7_4:+57492418 None:intergenic
GGTGGAGGAAGGATATAAAG+CGG 0.707303 7_4:-57492356 Msa1165540:CDS
GGAGGAAGGATATAAAGCGG+AGG 0.711941 7_4:-57492353 Msa1165540:CDS
TTTATGAATTTGCTTCAACG+AGG 0.719121 7_4:-57492251 Msa1165540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAGTTCAAAAAA+AGG - chr7_4:57491258-57491277 Msa1165540:intron 10.0%
!!! CTTGAATATTTTTATTATTT+TGG + chr7_4:57493207-57493226 None:intergenic 10.0%
!! ATAGTATTTATTGATATTAT+AGG - chr7_4:57493253-57493272 Msa1165540:intron 10.0%
!! TCATTTAATTAAAAAATGAT+TGG - chr7_4:57493720-57493739 Msa1165540:CDS 10.0%
!! TAAATGAAAAATCAATCAAT+CGG + chr7_4:57491016-57491035 None:intergenic 15.0%
!!! ATATTTATTTGTTAAGTAAG+TGG + chr7_4:57491850-57491869 None:intergenic 15.0%
!! ATTGAAAGATAAAATTGAAA+AGG - chr7_4:57492433-57492452 Msa1165540:intron 15.0%
!!! GTCTAATTTAAGAATTTTTA+TGG - chr7_4:57493291-57493310 Msa1165540:intron 15.0%
!!! ATTTTTATAATGAACATAAG+TGG - chr7_4:57493955-57493974 Msa1165540:CDS 15.0%
!! CTGTGTTAGTTAATTAATAT+AGG - chr7_4:57491041-57491060 Msa1165540:intron 20.0%
!! AATGCTTGTATTTATTTAGA+TGG - chr7_4:57491399-57491418 Msa1165540:intron 20.0%
!!! CAATACAAAAATATTTTGTG+AGG - chr7_4:57491691-57491710 Msa1165540:intron 20.0%
!!! TAAATGTGGTTTTGATAATT+TGG - chr7_4:57492871-57492890 Msa1165540:intron 20.0%
!!! AATTTAAGAATTTTTATGGC+AGG - chr7_4:57493295-57493314 Msa1165540:intron 20.0%
!!! ATTTAAGAATTTTTATGGCA+GGG - chr7_4:57493296-57493315 Msa1165540:intron 20.0%
!!! ATTATAGTTTTTTCTATGAC+AGG - chr7_4:57493585-57493604 Msa1165540:intron 20.0%
!!! TTATAGTTTTTTCTATGACA+GGG - chr7_4:57493586-57493605 Msa1165540:intron 20.0%
!! TTAGGTATCAAATTATTGAT+GGG - chr7_4:57493653-57493672 Msa1165540:CDS 20.0%
!! TTAAATGAAAGTAAGAAATC+AGG + chr7_4:57493708-57493727 None:intergenic 20.0%
!! GTTAATTATATATTCTTTGC+AGG - chr7_4:57493977-57493996 Msa1165540:CDS 20.0%
! ATTTGAGTCTATTGATGAAT+TGG - chr7_4:57491104-57491123 Msa1165540:intron 25.0%
! AATGATTGTTTAGAAGCAAA+TGG - chr7_4:57491132-57491151 Msa1165540:intron 25.0%
! AGCATAATTCTTGTAATACT+CGG + chr7_4:57491217-57491236 None:intergenic 25.0%
! ATTACAAGAATTATGCTGAA+CGG - chr7_4:57491220-57491239 Msa1165540:intron 25.0%
! TTTAGATCGAACAAGAATAT+AGG - chr7_4:57491489-57491508 Msa1165540:intron 25.0%
! TTAGATCGAACAAGAATATA+GGG - chr7_4:57491490-57491509 Msa1165540:intron 25.0%
!! CAGTCAATTTTATTATGTGA+TGG - chr7_4:57491728-57491747 Msa1165540:intron 25.0%
!!! ATTTTATTATGTGATGGATG+TGG - chr7_4:57491734-57491753 Msa1165540:intron 25.0%
!! TTACTTGGTTATTTAAGACA+TGG - chr7_4:57491964-57491983 Msa1165540:intron 25.0%
! AAAAAGATTCCAGAAAAGTT+TGG - chr7_4:57492110-57492129 Msa1165540:CDS 25.0%
! ATTTCTTGTATTAGTCACTT+TGG - chr7_4:57492491-57492510 Msa1165540:intron 25.0%
!!! TGGTAAATGCTTTTTGAAAT+TGG + chr7_4:57492526-57492545 None:intergenic 25.0%
! ATTTACCAATGCAAAGTTTA+AGG - chr7_4:57492538-57492557 Msa1165540:intron 25.0%
! AAAGTTTAAGGAATTCCAAT+TGG - chr7_4:57492550-57492569 Msa1165540:intron 25.0%
! GATGAAAGATATTATGTTCA+TGG - chr7_4:57492670-57492689 Msa1165540:intron 25.0%
!!! CATCTAATTATATTTTGGCA+CGG - chr7_4:57492813-57492832 Msa1165540:intron 25.0%
! AGGTATACACTTATTAAATG+TGG - chr7_4:57492857-57492876 Msa1165540:intron 25.0%
!! AAATATTCAAGTTCAAGAAG+AGG - chr7_4:57493216-57493235 Msa1165540:intron 25.0%
! ATATAACCATTCAACCATTT+AGG + chr7_4:57493508-57493527 None:intergenic 25.0%
! CTTAGGTATCAAATTATTGA+TGG - chr7_4:57493652-57493671 Msa1165540:CDS 25.0%
!! AATCCAAATCAAGAACATTT+TGG - chr7_4:57493877-57493896 Msa1165540:intron 25.0%
! AATCAAAACAAGTAGCATTA+TGG + chr7_4:57494028-57494047 None:intergenic 25.0%
!!! TACTTGTTTTGATTTGTTAC+AGG - chr7_4:57494034-57494053 Msa1165540:CDS 25.0%
! TGTATGAAAATACAATCTGT+TGG - chr7_4:57494079-57494098 Msa1165540:CDS 25.0%
! TTTGTTGTATTAGTGCAAGA+AGG - chr7_4:57491081-57491100 Msa1165540:intron 30.0%
TTACAAGAATTATGCTGAAC+GGG - chr7_4:57491221-57491240 Msa1165540:intron 30.0%
AAGTTCAAAAAAAGGAGATG+AGG - chr7_4:57491266-57491285 Msa1165540:intron 30.0%
AGTTCAAAAAAAGGAGATGA+GGG - chr7_4:57491267-57491286 Msa1165540:intron 30.0%
ATAATCATGATCTAAGTCCA+GGG - chr7_4:57491454-57491473 Msa1165540:intron 30.0%
TAGATCGAACAAGAATATAG+GGG - chr7_4:57491491-57491510 Msa1165540:intron 30.0%
GGTTATGAAAATCTCACATT+TGG - chr7_4:57491600-57491619 Msa1165540:intron 30.0%
! AGGGTTGCATATGAATATTT+TGG - chr7_4:57491804-57491823 Msa1165540:CDS 30.0%
TGATGATTTACTCCAACAAA+AGG + chr7_4:57491888-57491907 None:intergenic 30.0%
TTTGTTGGAGTAAATCATCA+CGG - chr7_4:57491888-57491907 Msa1165540:intron 30.0%
! AGGATACTGAAACTTTTACT+TGG - chr7_4:57491949-57491968 Msa1165540:intron 30.0%
! TTGGTTATTTAAGACATGGT+TGG - chr7_4:57491968-57491987 Msa1165540:intron 30.0%
! ACAAACTACATGATAACGAA+TGG - chr7_4:57492240-57492259 Msa1165540:intron 30.0%
! ATATGTAAGGGACACATTTT+GGG - chr7_4:57492304-57492323 Msa1165540:CDS 30.0%
!!! AGTATGAACTCGTTTTTTGA+TGG - chr7_4:57492356-57492375 Msa1165540:CDS 30.0%
GAATTCCTTAAACTTTGCAT+TGG + chr7_4:57492546-57492565 None:intergenic 30.0%
! TCATAGAAGCTATTTCCAAT+TGG + chr7_4:57492568-57492587 None:intergenic 30.0%
TTTAAATTCAAACAAGCAGC+AGG + chr7_4:57492732-57492751 None:intergenic 30.0%
! TGCTGCTTGTTTGAATTTAA+AGG - chr7_4:57492731-57492750 Msa1165540:intron 30.0%
! CGTGCCATCTAATTATATTT+TGG - chr7_4:57492808-57492827 Msa1165540:intron 30.0%
CGTGCCAAAATATAATTAGA+TGG + chr7_4:57492815-57492834 None:intergenic 30.0%
CGTTGAAGCAAATTCATAAA+AGG + chr7_4:57492939-57492958 None:intergenic 30.0%
! TTTATGAATTTGCTTCAACG+AGG - chr7_4:57492939-57492958 Msa1165540:intron 30.0%
CAATCTTCTTCTACAATTGT+AGG + chr7_4:57493046-57493065 None:intergenic 30.0%
! ATAGAAGTCTTCCTTTTAGA+AGG + chr7_4:57493130-57493149 None:intergenic 30.0%
ATATACTAGTCATGCAAATC+AGG - chr7_4:57493421-57493440 Msa1165540:intron 30.0%
GGTGCAAATATAAGATTCAT+TGG - chr7_4:57493442-57493461 Msa1165540:intron 30.0%
CTACAAATGAAGAGTTTCTT+AGG - chr7_4:57493635-57493654 Msa1165540:intron 30.0%
TATCAAATTATTGATGGGAC+TGG - chr7_4:57493658-57493677 Msa1165540:CDS 30.0%
ATCAAATTATTGATGGGACT+GGG - chr7_4:57493659-57493678 Msa1165540:CDS 30.0%
TGCATGTTAATATCTATACC+AGG - chr7_4:57493798-57493817 Msa1165540:CDS 30.0%
TATGTTTGTAGCAGTGAAAA+TGG - chr7_4:57493829-57493848 Msa1165540:CDS 30.0%
TGACCAAAATGTTCTTGATT+TGG + chr7_4:57493883-57493902 None:intergenic 30.0%
!! ACATTTTGGTCAAGTAAACA+AGG - chr7_4:57493891-57493910 Msa1165540:intron 30.0%
! CAAGGTGCAAATATAGATTT+TGG - chr7_4:57493909-57493928 Msa1165540:intron 30.0%
TTTATGACCTGAGAGTAATA+AGG + chr7_4:57494005-57494024 None:intergenic 30.0%
!!! TCTGTTGGTTTTTTATTGTG+TGG - chr7_4:57494094-57494113 Msa1165540:CDS 30.0%
!!! CTGTTGGTTTTTTATTGTGT+GGG - chr7_4:57494095-57494114 Msa1165540:CDS 30.0%
! TAATCCCTTTCTCTTTTTCT+AGG - chr7_4:57494148-57494167 Msa1165540:intron 30.0%
TGTTCCTAGAAAAAGAGAAA+GGG + chr7_4:57494155-57494174 None:intergenic 30.0%
TTGTTCCTAGAAAAAGAGAA+AGG + chr7_4:57494156-57494175 None:intergenic 30.0%
AAGAAGAAACACCTTGTGAT+GGG - chr7_4:57491163-57491182 Msa1165540:CDS 35.0%
GTTCAAAAAAAGGAGATGAG+GGG - chr7_4:57491268-57491287 Msa1165540:intron 35.0%
! TGCGTTTGAGTTATAGGATT+TGG + chr7_4:57491363-57491382 None:intergenic 35.0%
! TTACACTGCGTTTGAGTTAT+AGG + chr7_4:57491369-57491388 None:intergenic 35.0%
TATAACTCAAACGCAGTGTA+AGG - chr7_4:57491368-57491387 Msa1165540:intron 35.0%
CATAATCATGATCTAAGTCC+AGG - chr7_4:57491453-57491472 Msa1165540:intron 35.0%
TTAGAACTCAATGATCAAGC+TGG - chr7_4:57491531-57491550 Msa1165540:intron 35.0%
TAGAACTCAATGATCAAGCT+GGG - chr7_4:57491532-57491551 Msa1165540:intron 35.0%
! TCGGTTACGAAATGTGTTTT+GGG - chr7_4:57491767-57491786 Msa1165540:intron 35.0%
TGATCAGTGATTATGGCATT+TGG + chr7_4:57492014-57492033 None:intergenic 35.0%
TCTGTCTTGATCAGTGATTA+TGG + chr7_4:57492021-57492040 None:intergenic 35.0%
! CCTCGTCATAAAATCACTTT+TGG + chr7_4:57492198-57492217 None:intergenic 35.0%
! CCAAAAGTGATTTTATGACG+AGG - chr7_4:57492195-57492214 Msa1165540:CDS 35.0%
! AAAGTGATTTTATGACGAGG+TGG - chr7_4:57492198-57492217 Msa1165540:CDS 35.0%
! AAGTGATTTTATGACGAGGT+GGG - chr7_4:57492199-57492218 Msa1165540:CDS 35.0%
! ATGATAACGAATGGCTGAAA+GGG - chr7_4:57492249-57492268 Msa1165540:CDS 35.0%
! CATATGTAAGGGACACATTT+TGG - chr7_4:57492303-57492322 Msa1165540:CDS 35.0%
TCATGCATGTTTCAACAGAT+TGG - chr7_4:57492595-57492614 Msa1165540:intron 35.0%
TTTGTGTGCTTAAGCTCATA+GGG - chr7_4:57492774-57492793 Msa1165540:intron 35.0%
!!! CTAATTATATTTTGGCACGG+TGG - chr7_4:57492816-57492835 Msa1165540:intron 35.0%
!!! TGTGGTTTTGATAATTTGGC+TGG - chr7_4:57492875-57492894 Msa1165540:intron 35.0%
AAAACTGAATTGCAACGTGT+AGG - chr7_4:57492899-57492918 Msa1165540:intron 35.0%
GTAGGAGATGTTTCATTACA+TGG + chr7_4:57493028-57493047 None:intergenic 35.0%
!! AGCTACTTTAGGATCAAGAA+TGG + chr7_4:57493089-57493108 None:intergenic 35.0%
CTAAAGTAGCTCGAAGTAAA+GGG - chr7_4:57493098-57493117 Msa1165540:intron 35.0%
! GTGTTTTACAGATCTCAACT+TGG - chr7_4:57493356-57493375 Msa1165540:intron 35.0%
! TCTCAACTTGGTGATAGAAT+TGG - chr7_4:57493368-57493387 Msa1165540:intron 35.0%
AGTGTGAACATAGTCCTAAA+TGG - chr7_4:57493491-57493510 Msa1165540:intron 35.0%
CATAGTCCTAAATGGTTGAA+TGG - chr7_4:57493499-57493518 Msa1165540:intron 35.0%
! TATTGTGCTGATCTTTCATG+TGG + chr7_4:57494181-57494200 None:intergenic 35.0%
GAAGAAGAAACACCTTGTGA+TGG - chr7_4:57491162-57491181 Msa1165540:CDS 40.0%
GATGTCATTCGGATCTGAAA+AGG - chr7_4:57491185-57491204 Msa1165540:CDS 40.0%
AAGAATTATGCTGAACGGGT+GGG - chr7_4:57491225-57491244 Msa1165540:intron 40.0%
CTAAAATACCTTGCTTTCCC+TGG + chr7_4:57491474-57491493 None:intergenic 40.0%
! ATATAGGGGCACAAATGAAG+AGG - chr7_4:57491505-57491524 Msa1165540:intron 40.0%
TGGATGTGGATGATGAAAGT+CGG - chr7_4:57491748-57491767 Msa1165540:intron 40.0%
! GTCGGTTACGAAATGTGTTT+TGG - chr7_4:57491766-57491785 Msa1165540:intron 40.0%
! ATGCCTTTTGCTCCTTTTGT+TGG - chr7_4:57491873-57491892 Msa1165540:CDS 40.0%
ACTCCAACAAAAGGAGCAAA+AGG + chr7_4:57491879-57491898 None:intergenic 40.0%
TTGTGCTCTGTTGTCAAATG+AGG - chr7_4:57491929-57491948 Msa1165540:intron 40.0%
ACATGGTTGGAATGTATGCA+TGG - chr7_4:57491981-57492000 Msa1165540:CDS 40.0%
! TCTTTCTGAAAGCTCGTCAT+CGG - chr7_4:57492066-57492085 Msa1165540:CDS 40.0%
! CATGATAACGAATGGCTGAA+AGG - chr7_4:57492248-57492267 Msa1165540:CDS 40.0%
! TATTTGTTGAGCGACATCGT+TGG - chr7_4:57492273-57492292 Msa1165540:CDS 40.0%
! ATTTGTTGAGCGACATCGTT+GGG - chr7_4:57492274-57492293 Msa1165540:CDS 40.0%
ATGTGTCCCTTACATATGCA+GGG + chr7_4:57492301-57492320 None:intergenic 40.0%
AATGTGTCCCTTACATATGC+AGG + chr7_4:57492302-57492321 None:intergenic 40.0%
TGCATGTTTCAACAGATTGG+AGG - chr7_4:57492598-57492617 Msa1165540:intron 40.0%
GCATGTTTCAACAGATTGGA+GGG - chr7_4:57492599-57492618 Msa1165540:intron 40.0%
TTTCAACAGATTGGAGGGTT+TGG - chr7_4:57492604-57492623 Msa1165540:intron 40.0%
CTATGAGCTTAAGCACACAA+AGG + chr7_4:57492775-57492794 None:intergenic 40.0%
CTTTGTGTGCTTAAGCTCAT+AGG - chr7_4:57492773-57492792 Msa1165540:intron 40.0%
!!! ATTATATTTTGGCACGGTGG+AGG - chr7_4:57492819-57492838 Msa1165540:intron 40.0%
TAGGATCAAGAATGGTAGCT+TGG + chr7_4:57493081-57493100 None:intergenic 40.0%
! CCTTTACTTCGAGCTACTTT+AGG + chr7_4:57493100-57493119 None:intergenic 40.0%
CCTAAAGTAGCTCGAAGTAA+AGG - chr7_4:57493097-57493116 Msa1165540:intron 40.0%
!! GAAGTCTTCCTTTTAGAAGG+AGG + chr7_4:57493127-57493146 None:intergenic 40.0%
CTTGACCTCTAGATGTACAT+TGG + chr7_4:57493322-57493341 None:intergenic 40.0%
! TACAAACATAGTTCTGCTCC+TGG + chr7_4:57493819-57493838 None:intergenic 40.0%
! CCTTGTGATGGGATGTCATT+CGG - chr7_4:57491174-57491193 Msa1165540:CDS 45.0%
CAAGAATTATGCTGAACGGG+TGG - chr7_4:57491224-57491243 Msa1165540:intron 45.0%
ATCTAAGTCCAGGGAAAGCA+AGG - chr7_4:57491463-57491482 Msa1165540:intron 45.0%
CTGCTTCAACGACAAAGGAT+CGG + chr7_4:57491578-57491597 None:intergenic 45.0%
TCCTTTGTCGTTGAAGCAGA+TGG - chr7_4:57491579-57491598 Msa1165540:intron 45.0%
ACCATCTGCTTCAACGACAA+AGG + chr7_4:57491583-57491602 None:intergenic 45.0%
AAAGCAAGACGACTACGACT+TGG - chr7_4:57491651-57491670 Msa1165540:intron 45.0%
AAGCAAGACGACTACGACTT+GGG - chr7_4:57491652-57491671 Msa1165540:intron 45.0%
TTTGGGCAGATGCAAGATGT+AGG - chr7_4:57491784-57491803 Msa1165540:intron 45.0%
TTGGGCAGATGCAAGATGTA+GGG - chr7_4:57491785-57491804 Msa1165540:intron 45.0%
TCACGGTCAGTCTATGTTGT+TGG - chr7_4:57491905-57491924 Msa1165540:intron 45.0%
CACGGTCAGTCTATGTTGTT+GGG - chr7_4:57491906-57491925 Msa1165540:intron 45.0%
! GAGTGGCTACCAAACTTTTC+TGG + chr7_4:57492122-57492141 None:intergenic 45.0%
TGATAGACTCGTAGTCAGAG+TGG + chr7_4:57492139-57492158 None:intergenic 45.0%
TTGGGTCCCTGCATATGTAA+GGG - chr7_4:57492292-57492311 Msa1165540:CDS 45.0%
GGTGGAGGAAGGATATAAAG+CGG - chr7_4:57492834-57492853 Msa1165540:intron 45.0%
CCGAATGACATCCCATCACA+AGG + chr7_4:57491177-57491196 None:intergenic 50.0%
!! TATGCTGAACGGGTGGGTTT+TGG - chr7_4:57491231-57491250 Msa1165540:intron 50.0%
! TAGGGGCACAAATGAAGAGG+AGG - chr7_4:57491508-57491527 Msa1165540:intron 50.0%
! TTCTGAAAGCTCGTCATCGG+TGG - chr7_4:57492069-57492088 Msa1165540:CDS 50.0%
GTTGGGTCCCTGCATATGTA+AGG - chr7_4:57492291-57492310 Msa1165540:CDS 50.0%
! GTAAGGGACACATTTTGGGC+TGG - chr7_4:57492308-57492327 Msa1165540:CDS 50.0%
!!! TATTTTGGCACGGTGGAGGA+AGG - chr7_4:57492823-57492842 Msa1165540:intron 50.0%
GGAGGAAGGATATAAAGCGG+AGG - chr7_4:57492837-57492856 Msa1165540:intron 50.0%
!! AAGGGCGTCCTCCTTCTAAA+AGG - chr7_4:57493116-57493135 Msa1165540:intron 50.0%
CAGGGCCAATGTACATCTAG+AGG - chr7_4:57493314-57493333 Msa1165540:intron 50.0%
GCAGGCTCCTTATTACTCTC+AGG - chr7_4:57493995-57494014 Msa1165540:CDS 50.0%
! AGACGACTACGACTTGGGAC+AGG - chr7_4:57491657-57491676 Msa1165540:intron 55.0%
CTCGTCATCGGTGGTGCTTA+TGG - chr7_4:57492078-57492097 Msa1165540:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 57490992 57494220 57490992 ID=Msa1165540;Name=Msa1165540
chr7_4 mRNA 57490992 57494220 57490992 ID=Msa1165540-mRNA-1;Parent=Msa1165540;Name=Msa1165540-mRNA-1;_AED=0.32;_eAED=0.39;_QI=0|0|0|0.87|0.28|0.25|8|0|367
chr7_4 exon 57494214 57494220 57494214 ID=Msa1165540-mRNA-1:exon:17467;Parent=Msa1165540-mRNA-1
chr7_4 exon 57493917 57494118 57493917 ID=Msa1165540-mRNA-1:exon:17466;Parent=Msa1165540-mRNA-1
chr7_4 exon 57493652 57493895 57493652 ID=Msa1165540-mRNA-1:exon:17465;Parent=Msa1165540-mRNA-1
chr7_4 exon 57492244 57492445 57492244 ID=Msa1165540-mRNA-1:exon:17464;Parent=Msa1165540-mRNA-1
chr7_4 exon 57491975 57492222 57491975 ID=Msa1165540-mRNA-1:exon:17463;Parent=Msa1165540-mRNA-1
chr7_4 exon 57491803 57491895 57491803 ID=Msa1165540-mRNA-1:exon:17462;Parent=Msa1165540-mRNA-1
chr7_4 exon 57491157 57491213 57491157 ID=Msa1165540-mRNA-1:exon:17461;Parent=Msa1165540-mRNA-1
chr7_4 exon 57490992 57491042 57490992 ID=Msa1165540-mRNA-1:exon:17460;Parent=Msa1165540-mRNA-1
chr7_4 CDS 57494214 57494220 57494214 ID=Msa1165540-mRNA-1:cds;Parent=Msa1165540-mRNA-1
chr7_4 CDS 57493917 57494118 57493917 ID=Msa1165540-mRNA-1:cds;Parent=Msa1165540-mRNA-1
chr7_4 CDS 57493652 57493895 57493652 ID=Msa1165540-mRNA-1:cds;Parent=Msa1165540-mRNA-1
chr7_4 CDS 57492244 57492445 57492244 ID=Msa1165540-mRNA-1:cds;Parent=Msa1165540-mRNA-1
chr7_4 CDS 57491975 57492222 57491975 ID=Msa1165540-mRNA-1:cds;Parent=Msa1165540-mRNA-1
chr7_4 CDS 57491803 57491895 57491803 ID=Msa1165540-mRNA-1:cds;Parent=Msa1165540-mRNA-1
chr7_4 CDS 57491157 57491213 57491157 ID=Msa1165540-mRNA-1:cds;Parent=Msa1165540-mRNA-1
chr7_4 CDS 57490992 57491042 57490992 ID=Msa1165540-mRNA-1:cds;Parent=Msa1165540-mRNA-1
Gene Sequence

>Msa1165540

ATCATTATGCAAGAAGGATTTGAGTCTATTGATGAATTGGAAACTAATGATTGTTTAGAAGCAAATGGTACTTGTGAAGAAGAAACACCTTGTGATGGGATGTCATTCGGATCTGAAAAGGAAATTACCGAGTATTACAAGAATTATGCTGAACGGGTGGGTTTTGGAGTTAAAAAAATAAGTTCAAAAAAAGGAGATGAGGGGAAAATTCGAGCTAGAAAGTATGTGAGTCGTTCAAAGAATCTGTTAGAGCCAAATCCTATAACTCAAACGCAGTGTAAGGCTAGATTGAATGCTTGTATTTATTTAGATGGAACAACTAAAATTAAAAGTGCTTTTTTTGAGCATAATCATGATCTAAGTCCAGGGAAAGCAAGGTATTTTAGATCGAACAAGAATATAGGGGCACAAATGAAGAGGAGGTTAGAACTCAATGATCAAGCTGGGATTAATCACATCCTTTGTGTGCTTAAGCTCATAGGGAAAACTGATTTCGTGCCATCTAATTATATTTTGGCACGGTGGAGGAAGGATATAAAGCGGAGGTATACACTTATTAAATGTGGTTTTGATAATTTGGCTGGAAAAACTGAATTGCAACGTGTAGGTAAAGCTTGTGATGCCTTTTATGAATTTGCTTCAACGAGGATAAATATGATGAACTTGATTGAAAACATGAAAATTGAGTTACCATGTAATGAAACATCTCCTACAATTGTAGAAGAAGATTGTTCAGCTCAAAACCAAGCTACCATTCTTGATCCTAAAGTAGCTCGAAGTAAAGGGCGTCCTCCTTCTAAAAGGAAGACTTCTATAGTTGATCAGATTGTGAAGAAGAAGCTTGCACAAAAGAAAACTAAAAAAAGCAACCAAAATAATAAAAATATTCAAGTTCAAGAAGAGGGCCAATGTACATCTAGAGGTCAAGAAATTGAACACGAAGTGTTTTACAGATCTCAACTTGGTGATAGAATTGGCACACAAGAGAGCATTCAAGCTCCTTATTACTCTCAGGTCATAAACCATAATGCTACTTGTTTTGATTTGTTACAGGAACAACACCACATGAAAGATCAGCACAATAATCATAGAGACGCAAGTTGA

Protein sequence

>Msa1165540

IIMQEGFESIDELETNDCLEANGTCEEETPCDGMSFGSEKEITEYYKNYAERVGFGVKKISSKKGDEGKIRARKYVSRSKNLLEPNPITQTQCKARLNACIYLDGTTKIKSAFFEHNHDLSPGKARYFRSNKNIGAQMKRRLELNDQAGINHILCVLKLIGKTDFVPSNYILARWRKDIKRRYTLIKCGFDNLAGKTELQRVGKACDAFYEFASTRINMMNLIENMKIELPCNETSPTIVEEDCSAQNQATILDPKVARSKGRPPSKRKTSIVDQIVKKKLAQKKTKKSNQNNKNIQVQEEGQCTSRGQEIEHEVFYRSQLGDRIGTQESIQAPYYSQVINHNATCFDLLQEQHHMKDQHNNHRDAS*