Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348620 | XP_013458946.1 | 83.896 | 652 | 38 | 4 | 1 | 585 | 709 | 1360 | 0.0 | 1088 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348620 | A0A072UVA4 | 83.896 | 652 | 38 | 4 | 1 | 585 | 709 | 1360 | 0.0 | 1088 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015460 | Msa0348620 | 0.811420 | 7.064391e-51 | -8.615850e-47 |
| Msa0155880 | Msa0348620 | 0.804283 | 2.326858e-49 | -8.615850e-47 |
| Msa0348620 | Msa0483800 | 0.805660 | 1.198952e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348620 | MtrunA17_Chr3g0081531 | 83.896 | 652 | 38 | 4 | 1 | 585 | 709 | 1360 | 0.0 | 1088 |
| Msa0348620 | MtrunA17_Chr6g0482111 | 28.728 | 731 | 363 | 18 | 1 | 585 | 719 | 1437 | 9.62e-72 | 251 |
| Msa0348620 | MtrunA17_Chr6g0482091 | 40.299 | 335 | 136 | 8 | 309 | 585 | 49 | 377 | 1.38e-57 | 199 |
| Msa0348620 | MtrunA17_Chr3g0084151 | 27.761 | 335 | 167 | 10 | 1 | 265 | 703 | 1032 | 3.54e-25 | 110 |
| Msa0348620 | MtrunA17_Chr6g0482261 | 33.333 | 201 | 116 | 4 | 392 | 582 | 9 | 201 | 4.50e-21 | 92.8 |
| Msa0348620 | MtrunA17_Chr4g0010521 | 25.217 | 345 | 174 | 9 | 1 | 269 | 710 | 1046 | 1.16e-18 | 90.5 |
| Msa0348620 | MtrunA17_Chr6g0481001 | 29.693 | 293 | 164 | 14 | 1 | 268 | 691 | 966 | 1.66e-17 | 86.7 |
| Msa0348620 | MtrunA17_Chr8g0354711 | 23.064 | 581 | 346 | 23 | 27 | 562 | 864 | 1388 | 1.83e-17 | 86.7 |
| Msa0348620 | MtrunA17_Chr6g0481011 | 27.439 | 328 | 163 | 13 | 1 | 268 | 735 | 1047 | 4.06e-17 | 85.5 |
| Msa0348620 | MtrunA17_Chr6g0480911 | 26.748 | 329 | 173 | 11 | 1 | 268 | 731 | 1052 | 1.17e-16 | 84.0 |
| Msa0348620 | MtrunA17_Chr6g0480981 | 26.970 | 330 | 159 | 14 | 3 | 268 | 463 | 774 | 3.96e-16 | 82.0 |
| Msa0348620 | MtrunA17_Chr8g0371711 | 26.686 | 341 | 152 | 13 | 1 | 268 | 724 | 1039 | 7.47e-16 | 81.3 |
| Msa0348620 | MtrunA17_Chr8g0353381 | 29.375 | 160 | 97 | 6 | 118 | 268 | 6 | 158 | 1.96e-15 | 74.3 |
| Msa0348620 | MtrunA17_Chr8g0354701 | 25.574 | 305 | 195 | 9 | 3 | 295 | 824 | 1108 | 5.30e-15 | 79.0 |
| Msa0348620 | MtrunA17_Chr8g0354701 | 39.516 | 124 | 70 | 3 | 1 | 123 | 722 | 841 | 4.00e-12 | 69.7 |
| Msa0348620 | MtrunA17_Chr8g0354721 | 27.526 | 287 | 168 | 11 | 3 | 268 | 823 | 1090 | 9.02e-15 | 78.2 |
| Msa0348620 | MtrunA17_Chr8g0354721 | 36.066 | 122 | 75 | 2 | 1 | 122 | 721 | 839 | 4.76e-11 | 66.2 |
| Msa0348620 | MtrunA17_Chr8g0353371 | 28.125 | 160 | 99 | 5 | 118 | 268 | 955 | 1107 | 7.88e-14 | 75.1 |
| Msa0348620 | MtrunA17_Chr4g0010651 | 32.520 | 123 | 83 | 0 | 1 | 123 | 712 | 834 | 9.22e-14 | 74.7 |
| Msa0348620 | MtrunA17_Chr6g0478451 | 22.933 | 375 | 205 | 11 | 1 | 309 | 710 | 1066 | 1.83e-13 | 73.9 |
| Msa0348620 | MtrunA17_Chr5g0442761 | 39.370 | 127 | 68 | 3 | 1 | 123 | 718 | 839 | 2.49e-13 | 73.6 |
| Msa0348620 | MtrunA17_Chr5g0442761 | 28.269 | 283 | 156 | 13 | 11 | 270 | 807 | 1065 | 2.94e-13 | 73.2 |
| Msa0348620 | MtrunA17_Chr6g0472561 | 24.837 | 306 | 184 | 12 | 1 | 268 | 24 | 321 | 1.23e-12 | 69.7 |
| Msa0348620 | MtrunA17_Chr6g0451551 | 27.019 | 322 | 163 | 15 | 1 | 268 | 867 | 1170 | 3.74e-12 | 69.7 |
| Msa0348620 | MtrunA17_Chr6g0482321 | 28.777 | 278 | 151 | 16 | 14 | 272 | 899 | 1148 | 4.27e-12 | 69.3 |
| Msa0348620 | MtrunA17_Chr2g0299791 | 26.316 | 247 | 145 | 10 | 1 | 234 | 717 | 939 | 6.32e-12 | 68.9 |
| Msa0348620 | MtrunA17_Chr6g0479701 | 25.413 | 303 | 158 | 15 | 1 | 268 | 714 | 983 | 6.40e-12 | 68.9 |
| Msa0348620 | MtrunA17_Chr2g0299881 | 26.230 | 244 | 147 | 9 | 1 | 233 | 721 | 942 | 6.43e-12 | 68.9 |
| Msa0348620 | MtrunA17_Chr6g0484161 | 23.262 | 374 | 174 | 17 | 8 | 280 | 689 | 1050 | 9.51e-12 | 68.2 |
| Msa0348620 | MtrunA17_Chr1g0153501 | 24.224 | 161 | 106 | 6 | 116 | 273 | 2 | 149 | 3.77e-11 | 61.6 |
| Msa0348620 | MtrunA17_Chr2g0299851 | 26.337 | 243 | 145 | 9 | 1 | 233 | 716 | 934 | 4.47e-11 | 66.2 |
| Msa0348620 | MtrunA17_Chr3g0077971 | 27.160 | 162 | 98 | 5 | 116 | 271 | 1413 | 1560 | 5.86e-11 | 65.9 |
| Msa0348620 | MtrunA17_Chr6g0482141 | 24.214 | 318 | 180 | 12 | 1 | 271 | 893 | 1196 | 6.08e-11 | 65.9 |
| Msa0348620 | MtrunA17_Chr2g0299841 | 26.829 | 246 | 147 | 10 | 1 | 233 | 758 | 983 | 9.21e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGACTAATGATGCTAAATT+TGG | 0.127613 | 3_1:+11379268 | None:intergenic |
| TTGACAAAATTGAGAGAATT+AGG | 0.185884 | 3_1:-11379385 | Msa0348620:CDS |
| ATTTCATGTGACAAAATAAT+TGG | 0.198481 | 3_1:-11378217 | Msa0348620:CDS |
| GTGCAATGAGTTGGAATATT+TGG | 0.209236 | 3_1:-11376638 | Msa0348620:CDS |
| TTAGCATCATTAGTCCTTTC+AGG | 0.228530 | 3_1:-11379262 | Msa0348620:CDS |
| TGTATGAACAACCTTGTTCT+TGG | 0.283181 | 3_1:+11376546 | None:intergenic |
| AAGTGTCTTCAAAGCTTTCT+TGG | 0.293883 | 3_1:+11377057 | None:intergenic |
| TGAGAAGATTGATTCTGATT+TGG | 0.294045 | 3_1:-11378080 | Msa0348620:CDS |
| AAGAACTAATAAATGGTGTT+AGG | 0.296835 | 3_1:-11376594 | Msa0348620:CDS |
| AAGGAGAATATACGACCTTT+TGG | 0.300151 | 3_1:-11378486 | Msa0348620:CDS |
| CAGCTTATAGTTACATTTGA+TGG | 0.302656 | 3_1:+11378193 | None:intergenic |
| ACAAACACCAATTGCTAATC+TGG | 0.307419 | 3_1:-11377194 | Msa0348620:CDS |
| GGGAAACAGTTGAAAATTAT+CGG | 0.341872 | 3_1:+11379289 | None:intergenic |
| GTGATGTGGTCAAACCATTC+TGG | 0.342082 | 3_1:+11378511 | None:intergenic |
| TTTCAAGACAATTCACTTGT+TGG | 0.342188 | 3_1:-11376895 | Msa0348620:CDS |
| AATCATATTTAGTTGATGAT+TGG | 0.344669 | 3_1:-11378252 | Msa0348620:CDS |
| TAAAAGAACAGAAAAGTCTT+TGG | 0.345629 | 3_1:+11377021 | None:intergenic |
| GAGCTAGAAGAACTAATAAA+TGG | 0.354948 | 3_1:-11376601 | Msa0348620:CDS |
| CTTAGAAACCTTGATATTGA+AGG | 0.361310 | 3_1:-11379430 | Msa0348620:CDS |
| TAATTCAGAAATTATGTCAT+TGG | 0.363137 | 3_1:+11377108 | None:intergenic |
| CTCATATCTATTTCTATTGA+AGG | 0.367320 | 3_1:-11379571 | Msa0348620:CDS |
| TAATGTTCAATCATTGAATC+TGG | 0.368021 | 3_1:-11379341 | Msa0348620:CDS |
| GCAGAGCATAAAATAATTGC+TGG | 0.380817 | 3_1:+11378448 | None:intergenic |
| GAATTACAAGTTATGGTTCC+TGG | 0.381826 | 3_1:-11378544 | Msa0348620:CDS |
| GGCATGTGAATTACAAGTTA+TGG | 0.383966 | 3_1:-11378551 | Msa0348620:CDS |
| TACATTTGTGAGGTAATCTA+AGG | 0.395126 | 3_1:+11376967 | None:intergenic |
| ACCAAGATGCTTTACAGAAA+TGG | 0.396372 | 3_1:-11378338 | Msa0348620:CDS |
| AGTTCAGAGAGATGAGTTAA+GGG | 0.397832 | 3_1:-11376488 | Msa0348620:CDS |
| AAGTTCAGAGAGATGAGTTA+AGG | 0.406623 | 3_1:-11376489 | Msa0348620:CDS |
| CCTCACTGTTTATATAGAAT+CGG | 0.407250 | 3_1:+11378380 | None:intergenic |
| GCTTTCTTGGTTTCTTCACT+TGG | 0.408748 | 3_1:+11377070 | None:intergenic |
| ACGTATGGCTTTATGATTTG+AGG | 0.412646 | 3_1:-11378306 | Msa0348620:CDS |
| CAGTGAGGAAGTTTATGAAT+TGG | 0.415920 | 3_1:-11378365 | Msa0348620:CDS |
| GATGAAAGAATAAAGTCAAT+TGG | 0.418182 | 3_1:-11378046 | Msa0348620:CDS |
| GGACTAATGATGCTAAATTT+GGG | 0.425238 | 3_1:+11379269 | None:intergenic |
| AAAGGTCGTATATTCTCCTT+TGG | 0.430189 | 3_1:+11378489 | None:intergenic |
| CATTCTGGAATACTAGTTCC+AGG | 0.430810 | 3_1:+11378526 | None:intergenic |
| GTAATCTAAGGTAGATTTCA+TGG | 0.436164 | 3_1:+11376979 | None:intergenic |
| TTTCTACTGTTTCAAGAACT+TGG | 0.440001 | 3_1:-11377993 | Msa0348620:CDS |
| ACCATTTCTGTAAAGCATCT+TGG | 0.440124 | 3_1:+11378337 | None:intergenic |
| AGAACTAATAAATGGTGTTA+GGG | 0.442237 | 3_1:-11376593 | Msa0348620:CDS |
| TTCAAGATCATTCATTCTGA+TGG | 0.452608 | 3_1:+11378273 | None:intergenic |
| GTGGACAACCTTCAATATCA+AGG | 0.452825 | 3_1:+11379422 | None:intergenic |
| GAAGAATTGCCTCCTTCCAT+TGG | 0.476597 | 3_1:-11379538 | Msa0348620:CDS |
| AGTTATGATTACACAAATGA+AGG | 0.477628 | 3_1:-11376872 | Msa0348620:CDS |
| CTTGAATCTAAATCAAGATC+AGG | 0.485494 | 3_1:+11378112 | None:intergenic |
| ATCTGTTGATATAAGATCAA+TGG | 0.486123 | 3_1:-11376927 | Msa0348620:CDS |
| AGATCATTCATTCTGATGGA+TGG | 0.492953 | 3_1:+11378277 | None:intergenic |
| TCTATTTCTATTGAAGGGAC+TGG | 0.493287 | 3_1:-11379565 | Msa0348620:CDS |
| TATATTCTCCTTTGGTGATG+TGG | 0.501369 | 3_1:+11378497 | None:intergenic |
| TTACAAAATTATTTCCTGAA+AGG | 0.512220 | 3_1:+11379248 | None:intergenic |
| TTCATGGCATTGTACTCATT+AGG | 0.514710 | 3_1:+11376995 | None:intergenic |
| CTGGAACTAGTATTCCAGAA+TGG | 0.515502 | 3_1:-11378525 | Msa0348620:CDS |
| TTGTATAAAACTTGTGACTT+CGG | 0.520734 | 3_1:+11377213 | None:intergenic |
| GTGTGGAGTTCATATATGTA+GGG | 0.523463 | 3_1:-11378170 | Msa0348620:CDS |
| TTGCCTCTAAAACATACTAA+AGG | 0.524433 | 3_1:+11377869 | None:intergenic |
| AAATGAGTTGTGCAATGAGT+TGG | 0.526689 | 3_1:-11376647 | Msa0348620:CDS |
| GCATCATCCAGATTAGCAAT+TGG | 0.527952 | 3_1:+11377187 | None:intergenic |
| TCATATCTATTTCTATTGAA+GGG | 0.528337 | 3_1:-11379570 | Msa0348620:CDS |
| GGACAATCTACTCTTACCTT+CGG | 0.534348 | 3_1:-11379364 | Msa0348620:CDS |
| AAGAGCAACAAGATTTCCAA+TGG | 0.536104 | 3_1:+11379522 | None:intergenic |
| CATCAAATGTAACTATAAGC+TGG | 0.548693 | 3_1:-11378192 | Msa0348620:CDS |
| GGTGTGGAGTTCATATATGT+AGG | 0.548836 | 3_1:-11378171 | Msa0348620:CDS |
| ACAAATGTACCATCAGAAGA+TGG | 0.557757 | 3_1:-11376953 | Msa0348620:CDS |
| TGCTGCAAGTCACACTGAGA+TGG | 0.564753 | 3_1:-11377957 | Msa0348620:CDS |
| AATGTAACTATAAGCTGGTG+TGG | 0.570909 | 3_1:-11378187 | Msa0348620:CDS |
| GCAACAAGATTTCCAATGGA+AGG | 0.578109 | 3_1:+11379526 | None:intergenic |
| AGAGGCAACAATGTTGTCGA+AGG | 0.580698 | 3_1:-11377854 | Msa0348620:intron |
| ACAGATATTCCATCTTCTGA+TGG | 0.593873 | 3_1:+11376944 | None:intergenic |
| ATGTAGGGAAGAAGCTAACA+TGG | 0.595589 | 3_1:-11378155 | Msa0348620:CDS |
| AAATGGTGACAGATCACGTA+TGG | 0.599241 | 3_1:-11378321 | Msa0348620:CDS |
| GACATCTTGCTTGAGTCTCA+AGG | 0.599665 | 3_1:-11379485 | Msa0348620:CDS |
| CAATGAGTTGGAATATTTGG+AGG | 0.603641 | 3_1:-11376635 | Msa0348620:CDS |
| CAATGATTGAACATTACCGA+AGG | 0.623523 | 3_1:+11379348 | None:intergenic |
| TTCACAAGAAGCCAAGAACA+AGG | 0.623636 | 3_1:-11376557 | Msa0348620:CDS |
| CTTCTGATGGTACATTTGTG+AGG | 0.626448 | 3_1:+11376957 | None:intergenic |
| TGGTTTGACCACATCACCAA+AGG | 0.634241 | 3_1:-11378505 | Msa0348620:CDS |
| ACAAGATTTCCAATGGAAGG+AGG | 0.655112 | 3_1:+11379529 | None:intergenic |
| TAATCTGGATGATGCAGACA+TGG | 0.669382 | 3_1:-11377179 | Msa0348620:CDS |
| ATTGGAAACTGAAAGAACTG+AGG | 0.673824 | 3_1:+11377126 | None:intergenic |
| CCGATTCTATATAAACAGTG+AGG | 0.694658 | 3_1:-11378380 | Msa0348620:CDS |
| TCATTGAATCTGGAAAATTG+CGG | 0.710394 | 3_1:-11379331 | Msa0348620:CDS |
| TAGGGAAGAAGCTAACATGG+AGG | 0.762411 | 3_1:-11378152 | Msa0348620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTATTTGAAAATTTATAA+AGG | - | chr3_1:11377046-11377065 | Msa0348620:CDS | 10.0% |
| !! | CTTAAAAATAATTATTAATC+AGG | + | chr3_1:11377307-11377326 | None:intergenic | 10.0% |
| !!! | AATTATAAACTTTGAGTTTA+GGG | + | chr3_1:11377073-11377092 | None:intergenic | 15.0% |
| !!! | AAATTATAAACTTTGAGTTT+AGG | + | chr3_1:11377074-11377093 | None:intergenic | 15.0% |
| !!! | TATTTCATATTTCTTTTTAC+AGG | - | chr3_1:11377479-11377498 | Msa0348620:intron | 15.0% |
| !!! | TCATATCTATTTCTATTGAA+GGG | - | chr3_1:11376493-11376512 | Msa0348620:CDS | 20.0% |
| !! | TTACAAAATTATTTCCTGAA+AGG | + | chr3_1:11376818-11376837 | None:intergenic | 20.0% |
| !! | GCATTAATGTATTGTAAATT+CGG | + | chr3_1:11376930-11376949 | None:intergenic | 20.0% |
| !! | AATTAAACCATTAAAGAATG+AGG | + | chr3_1:11377010-11377029 | None:intergenic | 20.0% |
| !! | AAAGTTATTTAGAAAGTTCA+CGG | + | chr3_1:11377250-11377269 | None:intergenic | 20.0% |
| !! | TACAAAATATTGGTAAGTTT+AGG | - | chr3_1:11377341-11377360 | Msa0348620:intron | 20.0% |
| !! | AAAATGTAGGAAGATTATAA+AGG | + | chr3_1:11377438-11377457 | None:intergenic | 20.0% |
| !!! | AAATTTTTTTCTAACCCAAA+AGG | + | chr3_1:11377595-11377614 | None:intergenic | 20.0% |
| !!! | AATCATATTTAGTTGATGAT+TGG | - | chr3_1:11377811-11377830 | Msa0348620:intron | 20.0% |
| !! | ATTTCATGTGACAAAATAAT+TGG | - | chr3_1:11377846-11377865 | Msa0348620:intron | 20.0% |
| !! | CATTTAGAAATAGATATGAA+TGG | + | chr3_1:11378385-11378404 | None:intergenic | 20.0% |
| !! | ATTTCTAAATGACACATAAT+TGG | - | chr3_1:11378394-11378413 | Msa0348620:CDS | 20.0% |
| !! | GAATTTCTACTTACTATAAA+CGG | + | chr3_1:11378643-11378662 | None:intergenic | 20.0% |
| !!! | AATTCAAGTTATTCAAAGTA+AGG | + | chr3_1:11378665-11378684 | None:intergenic | 20.0% |
| !! | TAATTCAGAAATTATGTCAT+TGG | + | chr3_1:11378958-11378977 | None:intergenic | 20.0% |
| !!! | CTCATATCTATTTCTATTGA+AGG | - | chr3_1:11376492-11376511 | Msa0348620:CDS | 25.0% |
| ! | TTGACAAAATTGAGAGAATT+AGG | - | chr3_1:11376678-11376697 | Msa0348620:CDS | 25.0% |
| ! | TAATGTTCAATCATTGAATC+TGG | - | chr3_1:11376722-11376741 | Msa0348620:intron | 25.0% |
| !! | ATAATTTTGTAACTCTTCCA+AGG | - | chr3_1:11376826-11376845 | Msa0348620:intron | 25.0% |
| ! | TTAATGTATTGTAAATTCGG+AGG | + | chr3_1:11376927-11376946 | None:intergenic | 25.0% |
| ! | AGAGAATGTAAGTTATAAGT+GGG | + | chr3_1:11377161-11377180 | None:intergenic | 25.0% |
| ! | TAGAGAATGTAAGTTATAAG+TGG | + | chr3_1:11377162-11377181 | None:intergenic | 25.0% |
| ! | ATTATGTAACGTTTCATAGA+CGG | + | chr3_1:11377215-11377234 | None:intergenic | 25.0% |
| ! | TCGATCTGATTACAAAATAT+TGG | - | chr3_1:11377331-11377350 | Msa0348620:intron | 25.0% |
| !!! | AAACACAAGTTTTTTGGTTT+CGG | - | chr3_1:11377368-11377387 | Msa0348620:intron | 25.0% |
| ! | TGCAACAAAAGAAAAAATGT+AGG | + | chr3_1:11377451-11377470 | None:intergenic | 25.0% |
| ! | GATGAAAGAATAAAGTCAAT+TGG | - | chr3_1:11378017-11378036 | Msa0348620:CDS | 25.0% |
| ! | TTTATTGCATCCAAAAACAT+TGG | - | chr3_1:11378148-11378167 | Msa0348620:CDS | 25.0% |
| ! | TAAATGACACATAATTGGTT+GGG | - | chr3_1:11378399-11378418 | Msa0348620:CDS | 25.0% |
| ! | TTGGAATAGTAAAATGGAAA+CGG | + | chr3_1:11378511-11378530 | None:intergenic | 25.0% |
| ! | GTCACTGAAAATAATTCAAT+AGG | - | chr3_1:11378591-11378610 | Msa0348620:intron | 25.0% |
| ! | ATTCAATAGGATTTACAATG+TGG | - | chr3_1:11378604-11378623 | Msa0348620:intron | 25.0% |
| !! | TATACCAAATGTTGTGTTTT+TGG | + | chr3_1:11378740-11378759 | None:intergenic | 25.0% |
| ! | TTGTATAAAACTTGTGACTT+CGG | + | chr3_1:11378853-11378872 | None:intergenic | 25.0% |
| ! | TAAAAGAACAGAAAAGTCTT+TGG | + | chr3_1:11379045-11379064 | None:intergenic | 25.0% |
| !! | AAGACTTTTCTGTTCTTTTA+AGG | - | chr3_1:11379045-11379064 | Msa0348620:intron | 25.0% |
| ! | ATCTGTTGATATAAGATCAA+TGG | - | chr3_1:11379136-11379155 | Msa0348620:intron | 25.0% |
| ! | AGTTATGATTACACAAATGA+AGG | - | chr3_1:11379191-11379210 | Msa0348620:intron | 25.0% |
| !!! | TTCATCACTTTTCAACAATT+TGG | + | chr3_1:11379240-11379259 | None:intergenic | 25.0% |
| ! | ATATTTGGAGGAAAGAAAAA+AGG | - | chr3_1:11379440-11379459 | Msa0348620:CDS | 25.0% |
| ! | AAGAACTAATAAATGGTGTT+AGG | - | chr3_1:11379469-11379488 | Msa0348620:CDS | 25.0% |
| !! | AGAACTAATAAATGGTGTTA+GGG | - | chr3_1:11379470-11379489 | Msa0348620:CDS | 25.0% |
| ! | TGCAACATATCAATGTTTTC+AGG | + | chr3_1:11376609-11376628 | None:intergenic | 30.0% |
| CTTAGAAACCTTGATATTGA+AGG | - | chr3_1:11376633-11376652 | Msa0348620:CDS | 30.0% | |
| GTCAAAAAACTTCTCAATTG+TGG | + | chr3_1:11376663-11376682 | None:intergenic | 30.0% | |
| TCATTGAATCTGGAAAATTG+CGG | - | chr3_1:11376732-11376751 | Msa0348620:intron | 30.0% | |
| GGGAAACAGTTGAAAATTAT+CGG | + | chr3_1:11376777-11376796 | None:intergenic | 30.0% | |
| GGACTAATGATGCTAAATTT+GGG | + | chr3_1:11376797-11376816 | None:intergenic | 30.0% | |
| AGGACTAATGATGCTAAATT+TGG | + | chr3_1:11376798-11376817 | None:intergenic | 30.0% | |
| ATCAAACTTATTACTAAGCC+AGG | - | chr3_1:11376980-11376999 | Msa0348620:CDS | 30.0% | |
| ATTAAAGAATGAGGAAAACC+TGG | + | chr3_1:11377001-11377020 | None:intergenic | 30.0% | |
| ! | AGGTTTTCCTCATTCTTTAA+TGG | - | chr3_1:11377000-11377019 | Msa0348620:CDS | 30.0% |
| AGAATGTAAGTTATAAGTGG+GGG | + | chr3_1:11377159-11377178 | None:intergenic | 30.0% | |
| GAGAATGTAAGTTATAAGTG+GGG | + | chr3_1:11377160-11377179 | None:intergenic | 30.0% | |
| GAAACCAAAAAACTTGTGTT+TGG | + | chr3_1:11377369-11377388 | None:intergenic | 30.0% | |
| ! | TAGTCTGTTTCTCAACAATT+TGG | + | chr3_1:11377409-11377428 | None:intergenic | 30.0% |
| ! | CTTTTTACAGGAAACTTTTG+AGG | - | chr3_1:11377491-11377510 | Msa0348620:intron | 30.0% |
| CCTCACTGTTTATATAGAAT+CGG | + | chr3_1:11377686-11377705 | None:intergenic | 30.0% | |
| TTCAAGATCATTCATTCTGA+TGG | + | chr3_1:11377793-11377812 | None:intergenic | 30.0% | |
| CAGCTTATAGTTACATTTGA+TGG | + | chr3_1:11377873-11377892 | None:intergenic | 30.0% | |
| CATCAAATGTAACTATAAGC+TGG | - | chr3_1:11377871-11377890 | Msa0348620:CDS | 30.0% | |
| CTTGAATCTAAATCAAGATC+AGG | + | chr3_1:11377954-11377973 | None:intergenic | 30.0% | |
| ! | TGAGAAGATTGATTCTGATT+TGG | - | chr3_1:11377983-11378002 | Msa0348620:CDS | 30.0% |
| TTTCTACTGTTTCAAGAACT+TGG | - | chr3_1:11378070-11378089 | Msa0348620:CDS | 30.0% | |
| ! | GTAACACTATCCAATGTTTT+TGG | + | chr3_1:11378161-11378180 | None:intergenic | 30.0% |
| !! | ATGCCTTTAGTATGTTTTAG+AGG | - | chr3_1:11378191-11378210 | Msa0348620:CDS | 30.0% |
| !! | TTGCCTCTAAAACATACTAA+AGG | + | chr3_1:11378197-11378216 | None:intergenic | 30.0% |
| !!! | TACACTTTTACTTTTTGCTG+TGG | - | chr3_1:11378297-11378316 | Msa0348620:CDS | 30.0% |
| CTAAATGACACATAATTGGT+TGG | - | chr3_1:11378398-11378417 | Msa0348620:CDS | 30.0% | |
| AAATGACACATAATTGGTTG+GGG | - | chr3_1:11378400-11378419 | Msa0348620:CDS | 30.0% | |
| GTTGGATCACAAAATAGAAA+AGG | + | chr3_1:11378465-11378484 | None:intergenic | 30.0% | |
| TTATCGAAAAACAATGGAGT+TGG | + | chr3_1:11378483-11378502 | None:intergenic | 30.0% | |
| !! | ACTCCATTGTTTTTCGATAA+AGG | - | chr3_1:11378483-11378502 | Msa0348620:CDS | 30.0% |
| GATCCTTTATCGAAAAACAA+TGG | + | chr3_1:11378489-11378508 | None:intergenic | 30.0% | |
| AATAGGATTTACAATGTGGT+CGG | - | chr3_1:11378608-11378627 | Msa0348620:intron | 30.0% | |
| TACTTACTATAAACGGCATA+GGG | + | chr3_1:11378636-11378655 | None:intergenic | 30.0% | |
| TCTACCAAAAACACAACATT+TGG | - | chr3_1:11378733-11378752 | Msa0348620:intron | 30.0% | |
| TAAATATCTCCTCTTCATGT+AGG | - | chr3_1:11378780-11378799 | Msa0348620:intron | 30.0% | |
| ! | GTAATCTAAGGTAGATTTCA+TGG | + | chr3_1:11379087-11379106 | None:intergenic | 30.0% |
| TACATTTGTGAGGTAATCTA+AGG | + | chr3_1:11379099-11379118 | None:intergenic | 30.0% | |
| TTTCAAGACAATTCACTTGT+TGG | - | chr3_1:11379168-11379187 | Msa0348620:intron | 30.0% | |
| GAGCTAGAAGAACTAATAAA+TGG | - | chr3_1:11379462-11379481 | Msa0348620:CDS | 30.0% | |
| !! | TCTATTTCTATTGAAGGGAC+TGG | - | chr3_1:11376498-11376517 | Msa0348620:CDS | 35.0% |
| AAGAGCAACAAGATTTCCAA+TGG | + | chr3_1:11376544-11376563 | None:intergenic | 35.0% | |
| CAATGATTGAACATTACCGA+AGG | + | chr3_1:11376718-11376737 | None:intergenic | 35.0% | |
| TTAGCATCATTAGTCCTTTC+AGG | - | chr3_1:11376801-11376820 | Msa0348620:intron | 35.0% | |
| TGATATTCATGAATGCACCT+TGG | + | chr3_1:11376846-11376865 | None:intergenic | 35.0% | |
| CATTCATGAATATCATGCCT+TGG | - | chr3_1:11376851-11376870 | Msa0348620:CDS | 35.0% | |
| GAGGAAGACTTAGAATTTCT+TGG | + | chr3_1:11376908-11376927 | None:intergenic | 35.0% | |
| !! | CTTACAAGTTGGTTTCGTAA+GGG | + | chr3_1:11377126-11377145 | None:intergenic | 35.0% |
| !! | TCATAGACGGACTAAAATTC+AGG | + | chr3_1:11377202-11377221 | None:intergenic | 35.0% |
| !! | AGGTTCTGAAAGTTGTCAAT+AGG | + | chr3_1:11377287-11377306 | None:intergenic | 35.0% |
| !!! | GGATCCAAACACAAGTTTTT+TGG | - | chr3_1:11377362-11377381 | Msa0348620:intron | 35.0% |
| GGCATGTGAATTACAAGTTA+TGG | - | chr3_1:11377512-11377531 | Msa0348620:intron | 35.0% | |
| GAATTACAAGTTATGGTTCC+TGG | - | chr3_1:11377519-11377538 | Msa0348620:intron | 35.0% | |
| !! | TATATTCTCCTTTGGTGATG+TGG | + | chr3_1:11377569-11377588 | None:intergenic | 35.0% |
| AAAGGTCGTATATTCTCCTT+TGG | + | chr3_1:11377577-11377596 | None:intergenic | 35.0% | |
| ! | AAGGAGAATATACGACCTTT+TGG | - | chr3_1:11377577-11377596 | Msa0348620:intron | 35.0% |
| ! | AGGAGAATATACGACCTTTT+GGG | - | chr3_1:11377578-11377597 | Msa0348620:intron | 35.0% |
| GCAGAGCATAAAATAATTGC+TGG | + | chr3_1:11377618-11377637 | None:intergenic | 35.0% | |
| CCGATTCTATATAAACAGTG+AGG | - | chr3_1:11377683-11377702 | Msa0348620:intron | 35.0% | |
| CAGTGAGGAAGTTTATGAAT+TGG | - | chr3_1:11377698-11377717 | Msa0348620:intron | 35.0% | |
| ACCAAGATGCTTTACAGAAA+TGG | - | chr3_1:11377725-11377744 | Msa0348620:intron | 35.0% | |
| ! | ACCATTTCTGTAAAGCATCT+TGG | + | chr3_1:11377729-11377748 | None:intergenic | 35.0% |
| !! | ACGTATGGCTTTATGATTTG+AGG | - | chr3_1:11377757-11377776 | Msa0348620:intron | 35.0% |
| AGATCATTCATTCTGATGGA+TGG | + | chr3_1:11377789-11377808 | None:intergenic | 35.0% | |
| AATGTAACTATAAGCTGGTG+TGG | - | chr3_1:11377876-11377895 | Msa0348620:CDS | 35.0% | |
| GTGTGGAGTTCATATATGTA+GGG | - | chr3_1:11377893-11377912 | Msa0348620:CDS | 35.0% | |
| ATTATGCATTGCATTCTTGG+TGG | + | chr3_1:11378539-11378558 | None:intergenic | 35.0% | |
| GCTATTATGCATTGCATTCT+TGG | + | chr3_1:11378542-11378561 | None:intergenic | 35.0% | |
| CTACTTACTATAAACGGCAT+AGG | + | chr3_1:11378637-11378656 | None:intergenic | 35.0% | |
| TCTGCATAATTTCCAGCATT+TGG | - | chr3_1:11378690-11378709 | Msa0348620:intron | 35.0% | |
| ! | GAGGAGATATTTAAAGCACA+AGG | + | chr3_1:11378773-11378792 | None:intergenic | 35.0% |
| ATGTTTGATCCTACATGAAG+AGG | + | chr3_1:11378792-11378811 | None:intergenic | 35.0% | |
| CTGATCATCAAGCAAAAACT+CGG | - | chr3_1:11378820-11378839 | Msa0348620:intron | 35.0% | |
| TGATCATCAAGCAAAAACTC+GGG | - | chr3_1:11378821-11378840 | Msa0348620:intron | 35.0% | |
| ACAAACACCAATTGCTAATC+TGG | - | chr3_1:11378869-11378888 | Msa0348620:intron | 35.0% | |
| ATTGGAAACTGAAAGAACTG+AGG | + | chr3_1:11378940-11378959 | None:intergenic | 35.0% | |
| !! | TTCACTTGGAATTTTGCTGT+TGG | + | chr3_1:11378982-11379001 | None:intergenic | 35.0% |
| AAGTGTCTTCAAAGCTTTCT+TGG | + | chr3_1:11379009-11379028 | None:intergenic | 35.0% | |
| TTCATGGCATTGTACTCATT+AGG | + | chr3_1:11379071-11379090 | None:intergenic | 35.0% | |
| ACAAATGTACCATCAGAAGA+TGG | - | chr3_1:11379110-11379129 | Msa0348620:intron | 35.0% | |
| ACAGATATTCCATCTTCTGA+TGG | + | chr3_1:11379122-11379141 | None:intergenic | 35.0% | |
| AAATGAGTTGTGCAATGAGT+TGG | - | chr3_1:11379416-11379435 | Msa0348620:CDS | 35.0% | |
| ! | GTGCAATGAGTTGGAATATT+TGG | - | chr3_1:11379425-11379444 | Msa0348620:CDS | 35.0% |
| ! | CAATGAGTTGGAATATTTGG+AGG | - | chr3_1:11379428-11379447 | Msa0348620:CDS | 35.0% |
| TGTATGAACAACCTTGTTCT+TGG | + | chr3_1:11379520-11379539 | None:intergenic | 35.0% | |
| AAGTTCAGAGAGATGAGTTA+AGG | - | chr3_1:11379574-11379593 | Msa0348620:CDS | 35.0% | |
| AGTTCAGAGAGATGAGTTAA+GGG | - | chr3_1:11379575-11379594 | Msa0348620:CDS | 35.0% | |
| ACAAGATTTCCAATGGAAGG+AGG | + | chr3_1:11376537-11376556 | None:intergenic | 40.0% | |
| GCAACAAGATTTCCAATGGA+AGG | + | chr3_1:11376540-11376559 | None:intergenic | 40.0% | |
| GTGGACAACCTTCAATATCA+AGG | + | chr3_1:11376644-11376663 | None:intergenic | 40.0% | |
| GGACAATCTACTCTTACCTT+CGG | - | chr3_1:11376699-11376718 | Msa0348620:intron | 40.0% | |
| GTCTAAGTGAAGCAATTCCA+AGG | + | chr3_1:11376871-11376890 | None:intergenic | 40.0% | |
| !! | CCTTACAAGTTGGTTTCGTA+AGG | + | chr3_1:11377127-11377146 | None:intergenic | 40.0% |
| CCTTACGAAACCAACTTGTA+AGG | - | chr3_1:11377124-11377143 | Msa0348620:CDS | 40.0% | |
| !! | CATTCTGGAATACTAGTTCC+AGG | + | chr3_1:11377540-11377559 | None:intergenic | 40.0% |
| CTGGAACTAGTATTCCAGAA+TGG | - | chr3_1:11377538-11377557 | Msa0348620:intron | 40.0% | |
| AAATGGTGACAGATCACGTA+TGG | - | chr3_1:11377742-11377761 | Msa0348620:intron | 40.0% | |
| GGTGTGGAGTTCATATATGT+AGG | - | chr3_1:11377892-11377911 | Msa0348620:CDS | 40.0% | |
| ATGTAGGGAAGAAGCTAACA+TGG | - | chr3_1:11377908-11377927 | Msa0348620:CDS | 40.0% | |
| !! | GACGGGTTGGAATAGTAAAA+TGG | + | chr3_1:11378517-11378536 | None:intergenic | 40.0% |
| GCATCATCCAGATTAGCAAT+TGG | + | chr3_1:11378879-11378898 | None:intergenic | 40.0% | |
| TAATCTGGATGATGCAGACA+TGG | - | chr3_1:11378884-11378903 | Msa0348620:intron | 40.0% | |
| GCTTTCTTGGTTTCTTCACT+TGG | + | chr3_1:11378996-11379015 | None:intergenic | 40.0% | |
| CTTCTGATGGTACATTTGTG+AGG | + | chr3_1:11379109-11379128 | None:intergenic | 40.0% | |
| TTCACAAGAAGCCAAGAACA+AGG | - | chr3_1:11379506-11379525 | Msa0348620:CDS | 40.0% | |
| GAAGAATTGCCTCCTTCCAT+TGG | - | chr3_1:11376525-11376544 | Msa0348620:CDS | 45.0% | |
| GACATCTTGCTTGAGTCTCA+AGG | - | chr3_1:11376578-11376597 | Msa0348620:CDS | 45.0% | |
| CGAAACCAACTTGTAAGGTG+AGG | - | chr3_1:11377129-11377148 | Msa0348620:CDS | 45.0% | |
| GTGATGTGGTCAAACCATTC+TGG | + | chr3_1:11377555-11377574 | None:intergenic | 45.0% | |
| TGGTTTGACCACATCACCAA+AGG | - | chr3_1:11377558-11377577 | Msa0348620:intron | 45.0% | |
| TAGGGAAGAAGCTAACATGG+AGG | - | chr3_1:11377911-11377930 | Msa0348620:CDS | 45.0% | |
| AGAGGCAACAATGTTGTCGA+AGG | - | chr3_1:11378209-11378228 | Msa0348620:CDS | 45.0% | |
| TGCATTGCATTCTTGGTGGA+CGG | + | chr3_1:11378535-11378554 | None:intergenic | 45.0% | |
| CTGCATGTGTTTCCAAATGC+TGG | + | chr3_1:11378705-11378724 | None:intergenic | 45.0% | |
| TGGAAACACATGCAGATCAC+TGG | - | chr3_1:11378710-11378729 | Msa0348620:intron | 45.0% | |
| GACGTCCTCACCTTACAAGT+TGG | + | chr3_1:11377137-11377156 | None:intergenic | 50.0% | |
| TGCTGCAAGTCACACTGAGA+TGG | - | chr3_1:11378106-11378125 | Msa0348620:CDS | 50.0% | |
| ! | GCATTGCATTCTTGGTGGAC+GGG | + | chr3_1:11378534-11378553 | None:intergenic | 50.0% |
| ! | TGCATTCTTGGTGGACGGGT+TGG | + | chr3_1:11378530-11378549 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 11376483 | 11379602 | 11376483 | ID=Msa0348620;Name=Msa0348620 |
| chr3_1 | mRNA | 11376483 | 11379602 | 11376483 | ID=Msa0348620-mRNA-1;Parent=Msa0348620;Name=Msa0348620-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|4|0|585 |
| chr3_1 | exon | 11379252 | 11379602 | 11379252 | ID=Msa0348620-mRNA-1:exon:2977;Parent=Msa0348620-mRNA-1 |
| chr3_1 | exon | 11377855 | 11378584 | 11377855 | ID=Msa0348620-mRNA-1:exon:2976;Parent=Msa0348620-mRNA-1 |
| chr3_1 | exon | 11376834 | 11377283 | 11376834 | ID=Msa0348620-mRNA-1:exon:2975;Parent=Msa0348620-mRNA-1 |
| chr3_1 | exon | 11376483 | 11376706 | 11376483 | ID=Msa0348620-mRNA-1:exon:2974;Parent=Msa0348620-mRNA-1 |
| chr3_1 | CDS | 11379252 | 11379602 | 11379252 | ID=Msa0348620-mRNA-1:cds;Parent=Msa0348620-mRNA-1 |
| chr3_1 | CDS | 11377855 | 11378584 | 11377855 | ID=Msa0348620-mRNA-1:cds;Parent=Msa0348620-mRNA-1 |
| chr3_1 | CDS | 11376834 | 11377283 | 11376834 | ID=Msa0348620-mRNA-1:cds;Parent=Msa0348620-mRNA-1 |
| chr3_1 | CDS | 11376483 | 11376706 | 11376483 | ID=Msa0348620-mRNA-1:cds;Parent=Msa0348620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
