Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155880 | XP_013467041.1 | 96.715 | 274 | 9 | 0 | 1 | 274 | 1 | 274 | 0.0 | 551 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155880 | sp|Q9LW60|P2C44_ARATH | 43.369 | 279 | 132 | 7 | 1 | 273 | 1 | 259 | 8.73e-70 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155880 | A0A072VHH4 | 96.715 | 274 | 9 | 0 | 1 | 274 | 1 | 274 | 0.0 | 551 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015460 | Msa0155880 | 0.979039 | 4.223958e-147 | -8.615850e-47 |
| Msa0015480 | Msa0155880 | 0.920901 | 7.109574e-88 | -8.615850e-47 |
| Msa0037540 | Msa0155880 | -0.818783 | 1.636789e-52 | -8.615850e-47 |
| Msa0037590 | Msa0155880 | -0.818999 | 1.462218e-52 | -8.615850e-47 |
| Msa0064700 | Msa0155880 | 0.846825 | 1.702887e-59 | -8.615850e-47 |
| Msa0065010 | Msa0155880 | 0.804149 | 2.481126e-49 | -8.615850e-47 |
| Msa0082680 | Msa0155880 | -0.803188 | 3.928016e-49 | -8.615850e-47 |
| Msa0090390 | Msa0155880 | 0.831678 | 1.456408e-55 | -8.615850e-47 |
| Msa0109590 | Msa0155880 | 0.896491 | 3.507319e-76 | -8.615850e-47 |
| Msa0118540 | Msa0155880 | 0.823638 | 1.243523e-53 | -8.615850e-47 |
| Msa0129190 | Msa0155880 | -0.814986 | 1.164885e-51 | -8.615850e-47 |
| Msa0130520 | Msa0155880 | 0.807756 | 4.326543e-50 | -8.615850e-47 |
| Msa0137870 | Msa0155880 | 0.806024 | 1.005299e-49 | -8.615850e-47 |
| Msa0140520 | Msa0155880 | -0.812796 | 3.540359e-51 | -8.615850e-47 |
| Msa0148120 | Msa0155880 | 0.814301 | 1.651906e-51 | -8.615850e-47 |
| Msa0155880 | Msa0177700 | -0.818506 | 1.891321e-52 | -8.615850e-47 |
| Msa0155880 | Msa0183460 | 0.828191 | 1.031230e-54 | -8.615850e-47 |
| Msa0155880 | Msa0186310 | 0.823118 | 1.644865e-53 | -8.615850e-47 |
| Msa0155880 | Msa0187230 | 0.826789 | 2.236744e-54 | -8.615850e-47 |
| Msa0155880 | Msa0189520 | 0.815653 | 8.281127e-52 | -8.615850e-47 |
| Msa0155880 | Msa0197660 | 0.828526 | 8.562996e-55 | -8.615850e-47 |
| Msa0155880 | Msa0231660 | 0.807990 | 3.858260e-50 | -8.615850e-47 |
| Msa0155880 | Msa0231790 | 0.800807 | 1.211902e-48 | -8.615850e-47 |
| Msa0155880 | Msa0239490 | 0.805717 | 1.166341e-49 | -8.615850e-47 |
| Msa0155880 | Msa0239800 | 0.834538 | 2.829290e-56 | -8.615850e-47 |
| Msa0155880 | Msa0245310 | 0.811286 | 7.552514e-51 | -8.615850e-47 |
| Msa0155880 | Msa0268090 | 0.813513 | 2.464473e-51 | -8.615850e-47 |
| Msa0155880 | Msa0271360 | 0.834372 | 3.113835e-56 | -8.615850e-47 |
| Msa0155880 | Msa0277820 | 0.802235 | 6.176654e-49 | -8.615850e-47 |
| Msa0155880 | Msa0295330 | 0.808182 | 3.511330e-50 | -8.615850e-47 |
| Msa0155880 | Msa0308200 | 0.802013 | 6.862901e-49 | -8.615850e-47 |
| Msa0155880 | Msa0309880 | 0.809457 | 1.874838e-50 | -8.615850e-47 |
| Msa0155880 | Msa0314120 | 0.810987 | 8.769034e-51 | -8.615850e-47 |
| Msa0155880 | Msa0317510 | 0.826224 | 3.050241e-54 | -8.615850e-47 |
| Msa0155880 | Msa0340690 | 0.812801 | 3.531111e-51 | -8.615850e-47 |
| Msa0155880 | Msa0340710 | 0.800463 | 1.424418e-48 | -8.615850e-47 |
| Msa0155880 | Msa0347610 | 0.806298 | 8.804508e-50 | -8.615850e-47 |
| Msa0155880 | Msa0348620 | 0.804283 | 2.326858e-49 | -8.615850e-47 |
| Msa0155880 | Msa0385490 | 0.829382 | 5.312330e-55 | -8.615850e-47 |
| Msa0155880 | Msa0386040 | 0.829126 | 6.127958e-55 | -8.615850e-47 |
| Msa0155880 | Msa0387910 | 0.808440 | 3.094660e-50 | -8.615850e-47 |
| Msa0155880 | Msa0394340 | 0.803187 | 3.929247e-49 | -8.615850e-47 |
| Msa0155880 | Msa0429950 | 0.817023 | 4.089069e-52 | -8.615850e-47 |
| Msa0155880 | Msa0436190 | 0.816814 | 4.553986e-52 | -8.615850e-47 |
| Msa0155880 | Msa0436920 | -0.806582 | 7.668324e-50 | -8.615850e-47 |
| Msa0155880 | Msa0457510 | 0.826712 | 2.333394e-54 | -8.615850e-47 |
| Msa0155880 | Msa0467220 | 0.801538 | 8.590853e-49 | -8.615850e-47 |
| Msa0155880 | Msa0473830 | -0.806239 | 9.060761e-50 | -8.615850e-47 |
| Msa0155880 | Msa0489610 | 0.826438 | 2.713316e-54 | -8.615850e-47 |
| Msa0155880 | Msa0524600 | 0.805770 | 1.136896e-49 | -8.615850e-47 |
| Msa0155880 | Msa0530100 | 0.821075 | 4.895092e-53 | -8.615850e-47 |
| Msa0155880 | Msa0534410 | 0.823315 | 1.479526e-53 | -8.615850e-47 |
| Msa0155880 | Msa0590650 | 0.823778 | 1.153465e-53 | -8.615850e-47 |
| Msa0155880 | Msa0597000 | 0.826734 | 2.305414e-54 | -8.615850e-47 |
| Msa0155880 | Msa0602370 | 0.802936 | 4.428131e-49 | -8.615850e-47 |
| Msa0155880 | Msa0610130 | 0.813211 | 2.871318e-51 | -8.615850e-47 |
| Msa0155880 | Msa0618200 | -0.810504 | 1.115608e-50 | -8.615850e-47 |
| Msa0155880 | Msa0619920 | 0.810637 | 1.043969e-50 | -8.615850e-47 |
| Msa0155880 | Msa0620620 | 0.806995 | 6.275302e-50 | -8.615850e-47 |
| Msa0155880 | Msa0630950 | 0.816716 | 4.791127e-52 | -8.615850e-47 |
| Msa0155880 | Msa0654010 | 0.800454 | 1.430324e-48 | -8.615850e-47 |
| Msa0155880 | Msa0661710 | 0.817717 | 2.853649e-52 | -8.615850e-47 |
| Msa0155880 | Msa0669190 | 0.827209 | 1.775538e-54 | -8.615850e-47 |
| Msa0155880 | Msa0670270 | 0.805816 | 1.111811e-49 | -8.615850e-47 |
| Msa0155880 | Msa0679550 | 0.805963 | 1.035466e-49 | -8.615850e-47 |
| Msa0155880 | Msa0683140 | 0.804803 | 1.812776e-49 | -8.615850e-47 |
| Msa0155880 | Msa0683600 | 0.807192 | 5.700357e-50 | -8.615850e-47 |
| Msa0155880 | Msa0689780 | 0.812660 | 3.791473e-51 | -8.615850e-47 |
| Msa0155880 | Msa0703910 | 0.814057 | 1.870100e-51 | -8.615850e-47 |
| Msa0155880 | Msa0705600 | 0.822927 | 1.822992e-53 | -8.615850e-47 |
| Msa0155880 | Msa0706400 | 0.810621 | 1.052385e-50 | -8.615850e-47 |
| Msa0155880 | Msa0713350 | 0.802026 | 6.820340e-49 | -8.615850e-47 |
| Msa0155880 | Msa0715410 | 0.830832 | 2.352095e-55 | -8.615850e-47 |
| Msa0155880 | Msa0719420 | 0.805611 | 1.227943e-49 | -8.615850e-47 |
| Msa0155880 | Msa0742150 | 0.826766 | 2.265127e-54 | -8.615850e-47 |
| Msa0155880 | Msa0779090 | 0.828858 | 7.114776e-55 | -8.615850e-47 |
| Msa0155880 | Msa0782520 | 0.802033 | 6.795830e-49 | -8.615850e-47 |
| Msa0155880 | Msa0784380 | 0.815711 | 8.035768e-52 | -8.615850e-47 |
| Msa0155880 | Msa0784860 | 0.801578 | 8.427694e-49 | -8.615850e-47 |
| Msa0155880 | Msa0789680 | 0.805311 | 1.419096e-49 | -8.615850e-47 |
| Msa0155880 | Msa0791820 | 0.800201 | 1.610718e-48 | -8.615850e-47 |
| Msa0155880 | Msa0793390 | 0.801773 | 7.686297e-49 | -8.615850e-47 |
| Msa0155880 | Msa0802410 | 0.816437 | 5.531462e-52 | -8.615850e-47 |
| Msa0155880 | Msa0818170 | 0.807466 | 4.986636e-50 | -8.615850e-47 |
| Msa0155880 | Msa0826760 | 0.816146 | 6.427311e-52 | -8.615850e-47 |
| Msa0155880 | Msa0861470 | 0.813844 | 2.083614e-51 | -8.615850e-47 |
| Msa0155880 | Msa0861570 | 0.813695 | 2.247358e-51 | -8.615850e-47 |
| Msa0155880 | Msa0864470 | -0.803099 | 4.098369e-49 | -8.615850e-47 |
| Msa0155880 | Msa0870150 | 0.812938 | 3.294653e-51 | -8.615850e-47 |
| Msa0155880 | Msa0895310 | 0.823930 | 1.062411e-53 | -8.615850e-47 |
| Msa0155880 | Msa0898890 | 0.822001 | 2.992370e-53 | -8.615850e-47 |
| Msa0155880 | Msa0932100 | 0.808683 | 2.745157e-50 | -8.615850e-47 |
| Msa0155880 | Msa0932190 | 0.800118 | 1.674363e-48 | -8.615850e-47 |
| Msa0155880 | Msa0937330 | 0.824819 | 6.565799e-54 | -8.615850e-47 |
| Msa0155880 | Msa0942550 | -0.819263 | 1.273187e-52 | -8.615850e-47 |
| Msa0155880 | Msa0945100 | 0.814801 | 1.280109e-51 | -8.615850e-47 |
| Msa0155880 | Msa0945120 | 0.836475 | 9.157514e-57 | -8.615850e-47 |
| Msa0155880 | Msa0970230 | 0.808005 | 3.830230e-50 | -8.615850e-47 |
| Msa0155880 | Msa0993240 | 0.801766 | 7.712441e-49 | -8.615850e-47 |
| Msa0155880 | Msa0994370 | 0.816675 | 4.893408e-52 | -8.615850e-47 |
| Msa0155880 | Msa0994390 | 0.831674 | 1.460270e-55 | -8.615850e-47 |
| Msa0155880 | Msa1000930 | 0.828974 | 6.672035e-55 | -8.615850e-47 |
| Msa0155880 | Msa1029080 | -0.809454 | 1.877663e-50 | -8.615850e-47 |
| Msa0155880 | Msa1062030 | 0.804622 | 1.977938e-49 | -8.615850e-47 |
| Msa0155880 | Msa1064250 | 0.809780 | 1.598040e-50 | -8.615850e-47 |
| Msa0155880 | Msa1071320 | 0.811850 | 5.695342e-51 | -8.615850e-47 |
| Msa0155880 | Msa1088290 | 0.803069 | 4.155693e-49 | -8.615850e-47 |
| Msa0155880 | Msa1094430 | 0.834652 | 2.647747e-56 | -8.615850e-47 |
| Msa0155880 | Msa1103660 | -0.813009 | 3.178724e-51 | -8.615850e-47 |
| Msa0155880 | Msa1107190 | 0.803531 | 3.334389e-49 | -8.615850e-47 |
| Msa0155880 | Msa1115280 | 0.800506 | 1.395919e-48 | -8.615850e-47 |
| Msa0155880 | Msa1120810 | 0.811502 | 6.780663e-51 | -8.615850e-47 |
| Msa0155880 | Msa1126850 | 0.817438 | 3.297702e-52 | -8.615850e-47 |
| Msa0155880 | Msa1133250 | 0.809208 | 2.119300e-50 | -8.615850e-47 |
| Msa0155880 | Msa1156170 | -0.800422 | 1.452277e-48 | -8.615850e-47 |
| Msa0155880 | Msa1164020 | 0.805573 | 1.250572e-49 | -8.615850e-47 |
| Msa0155880 | Msa1206310 | 0.811698 | 6.146379e-51 | -8.615850e-47 |
| Msa0155880 | Msa1206360 | 0.819518 | 1.113548e-52 | -8.615850e-47 |
| Msa0155880 | Msa1253810 | 0.805319 | 1.413770e-49 | -8.615850e-47 |
| Msa0155880 | Msa1270660 | 0.809288 | 2.037390e-50 | -8.615850e-47 |
| Msa0155880 | Msa1276340 | 0.823505 | 1.335928e-53 | -8.615850e-47 |
| Msa0155880 | Msa1355890 | 0.816734 | 4.747212e-52 | -8.615850e-47 |
| Msa0155880 | Msa1363700 | 0.806878 | 6.641012e-50 | -8.615850e-47 |
| Msa0155880 | Msa1371090 | 0.807866 | 4.100265e-50 | -8.615850e-47 |
| Msa0155880 | Msa1403340 | 0.809207 | 2.120675e-50 | -8.615850e-47 |
| Msa0155880 | Msa1420270 | 0.808841 | 2.540126e-50 | -8.615850e-47 |
| Msa0155880 | Msa1443610 | 0.838982 | 2.080543e-57 | -8.615850e-47 |
| Msa0155880 | Msa1454950 | 0.805266 | 1.450153e-49 | -8.615850e-47 |
| Msa0155880 | Msa1457160 | 0.800017 | 1.755675e-48 | -8.615850e-47 |
| Msa0155880 | Msa1459760 | -0.819020 | 1.446206e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155880 | MtrunA17_Chr1g0166481 | 96.715 | 274 | 9 | 0 | 1 | 274 | 1 | 274 | 0.0 | 551 |
| Msa0155880 | MtrunA17_Chr1g0187481 | 60.072 | 278 | 107 | 1 | 1 | 274 | 1 | 278 | 2.54e-119 | 342 |
| Msa0155880 | MtrunA17_Chr8g0360351 | 37.891 | 256 | 129 | 6 | 41 | 273 | 33 | 281 | 3.70e-39 | 138 |
| Msa0155880 | MtrunA17_Chr2g0279151 | 34.457 | 267 | 145 | 5 | 30 | 273 | 21 | 280 | 1.69e-34 | 125 |
| Msa0155880 | MtrunA17_Chr4g0050381 | 32.143 | 280 | 160 | 5 | 17 | 273 | 4 | 276 | 5.14e-34 | 124 |
| Msa0155880 | MtrunA17_Chr2g0317021 | 36.328 | 256 | 133 | 6 | 41 | 273 | 84 | 332 | 4.68e-33 | 123 |
| Msa0155880 | MtrunA17_Chr5g0426141 | 35.398 | 226 | 121 | 4 | 71 | 273 | 58 | 281 | 4.67e-32 | 119 |
| Msa0155880 | MtrunA17_Chr3g0115851 | 32.743 | 226 | 127 | 4 | 71 | 273 | 58 | 281 | 5.53e-28 | 108 |
| Msa0155880 | MtrunA17_Chr4g0051661 | 32.031 | 256 | 143 | 5 | 41 | 273 | 150 | 397 | 3.31e-25 | 103 |
| Msa0155880 | MtrunA17_Chr1g0150451 | 28.837 | 215 | 132 | 3 | 80 | 273 | 109 | 323 | 3.63e-24 | 99.4 |
| Msa0155880 | MtrunA17_Chr3g0136711 | 28.372 | 215 | 133 | 3 | 80 | 273 | 66 | 280 | 4.84e-23 | 95.9 |
| Msa0155880 | MtrunA17_Chr1g0212961 | 26.728 | 217 | 134 | 6 | 79 | 274 | 126 | 338 | 1.01e-16 | 79.0 |
| Msa0155880 | MtrunA17_Chr3g0126511 | 26.840 | 231 | 144 | 5 | 67 | 274 | 113 | 341 | 5.12e-14 | 71.2 |
| Msa0155880 | MtrunA17_Chr5g0407161 | 26.104 | 249 | 148 | 9 | 59 | 273 | 99 | 345 | 2.10e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155880 | AT3G23360.1 | 43.369 | 279 | 132 | 7 | 1 | 273 | 1 | 259 | 8.87e-71 | 219 |
| Msa0155880 | AT4G28400.3 | 35.938 | 256 | 134 | 5 | 41 | 273 | 12 | 260 | 5.15e-38 | 134 |
| Msa0155880 | AT4G28400.1 | 35.938 | 256 | 134 | 5 | 41 | 273 | 34 | 282 | 8.73e-38 | 134 |
| Msa0155880 | AT2G20630.1 | 34.375 | 256 | 138 | 5 | 41 | 273 | 30 | 278 | 1.24e-37 | 134 |
| Msa0155880 | AT2G20630.2 | 33.984 | 256 | 139 | 5 | 41 | 273 | 30 | 278 | 2.98e-35 | 128 |
| Msa0155880 | AT3G15260.2 | 33.574 | 277 | 153 | 7 | 20 | 273 | 20 | 288 | 1.17e-34 | 127 |
| Msa0155880 | AT3G15260.1 | 33.574 | 277 | 153 | 7 | 20 | 273 | 20 | 288 | 1.17e-34 | 127 |
| Msa0155880 | AT1G22280.1 | 34.222 | 225 | 123 | 4 | 72 | 273 | 58 | 280 | 5.21e-30 | 114 |
| Msa0155880 | AT1G22280.3 | 33.766 | 231 | 122 | 5 | 72 | 273 | 58 | 286 | 2.86e-29 | 112 |
| Msa0155880 | AT1G78200.1 | 34.274 | 248 | 135 | 6 | 52 | 273 | 37 | 282 | 1.02e-28 | 110 |
| Msa0155880 | AT1G78200.3 | 34.274 | 248 | 135 | 6 | 52 | 273 | 37 | 282 | 1.02e-28 | 110 |
| Msa0155880 | AT1G78200.2 | 34.274 | 248 | 135 | 6 | 52 | 273 | 37 | 282 | 1.02e-28 | 110 |
| Msa0155880 | AT1G78200.5 | 35.111 | 225 | 118 | 6 | 75 | 273 | 15 | 237 | 1.03e-28 | 110 |
| Msa0155880 | AT1G78200.4 | 35.111 | 225 | 118 | 6 | 75 | 273 | 15 | 237 | 1.03e-28 | 110 |
| Msa0155880 | AT1G34750.2 | 30.496 | 282 | 171 | 4 | 15 | 273 | 2 | 281 | 1.48e-27 | 107 |
| Msa0155880 | AT1G34750.1 | 30.496 | 282 | 171 | 4 | 15 | 273 | 2 | 281 | 1.48e-27 | 107 |
| Msa0155880 | AT1G34750.3 | 30.496 | 282 | 171 | 4 | 15 | 273 | 2 | 281 | 1.48e-27 | 107 |
| Msa0155880 | AT4G31750.2 | 28.837 | 215 | 132 | 3 | 80 | 273 | 65 | 279 | 9.84e-25 | 100 |
| Msa0155880 | AT4G31750.1 | 28.837 | 215 | 132 | 3 | 80 | 273 | 65 | 279 | 1.03e-24 | 100 |
| Msa0155880 | AT4G31750.3 | 28.837 | 215 | 132 | 3 | 80 | 273 | 65 | 279 | 1.03e-24 | 100 |
| Msa0155880 | AT2G34740.1 | 29.412 | 255 | 148 | 5 | 43 | 273 | 88 | 334 | 1.79e-23 | 98.2 |
| Msa0155880 | AT5G24940.1 | 29.224 | 219 | 132 | 5 | 77 | 273 | 62 | 279 | 6.17e-23 | 97.8 |
| Msa0155880 | AT4G28400.2 | 33.803 | 213 | 111 | 5 | 41 | 230 | 34 | 239 | 3.45e-21 | 90.1 |
| Msa0155880 | AT5G10740.1 | 26.512 | 215 | 137 | 3 | 80 | 273 | 65 | 279 | 1.25e-20 | 90.5 |
| Msa0155880 | AT5G10740.2 | 26.512 | 215 | 137 | 3 | 80 | 273 | 65 | 279 | 1.25e-20 | 90.5 |
| Msa0155880 | AT5G53140.1 | 26.512 | 215 | 137 | 3 | 80 | 273 | 133 | 347 | 6.30e-17 | 80.5 |
| Msa0155880 | AT5G53140.2 | 26.512 | 215 | 137 | 3 | 80 | 273 | 133 | 347 | 6.30e-17 | 80.5 |
| Msa0155880 | AT2G34740.3 | 27.570 | 214 | 123 | 5 | 41 | 230 | 82 | 287 | 4.73e-13 | 68.6 |
| Msa0155880 | AT2G34740.2 | 27.830 | 212 | 121 | 5 | 43 | 230 | 102 | 305 | 5.09e-13 | 68.6 |
| Msa0155880 | AT1G34750.4 | 27.197 | 239 | 149 | 4 | 15 | 230 | 2 | 238 | 1.45e-11 | 63.5 |
| Msa0155880 | AT3G51470.2 | 22.857 | 245 | 160 | 6 | 57 | 273 | 40 | 283 | 3.08e-11 | 63.2 |
| Msa0155880 | AT3G51470.1 | 22.634 | 243 | 159 | 6 | 59 | 273 | 86 | 327 | 3.64e-11 | 63.2 |
Find 49 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTGGCTTGCAAATATT+TGG | 0.170520 | 1_4:+21523667 | None:intergenic |
| GAGATTCTTGTCAAAATAAT+TGG | 0.178491 | 1_4:+21523652 | None:intergenic |
| TGCTCTCTTGAGTGTTTCTT+TGG | 0.223443 | 1_4:+21523062 | None:intergenic |
| ACATCTGTGATGATAATAAA+TGG | 0.273873 | 1_4:-21522973 | Msa0155880:CDS |
| TGATAAGATTCACTGCTTCT+TGG | 0.281632 | 1_4:+21521962 | None:intergenic |
| AACTTGTGGTTGGAAGTTAT+TGG | 0.296396 | 1_4:-21522223 | Msa0155880:CDS |
| GTGGAGCATGATTGGATTAA+TGG | 0.328700 | 1_4:-21523800 | Msa0155880:CDS |
| GAATGATTAAACATGAAATA+TGG | 0.342084 | 1_4:+21521869 | None:intergenic |
| TAGTACTGAATTTGTGATCT+TGG | 0.359368 | 1_4:-21522192 | Msa0155880:CDS |
| CTTAGGAATCTTTGATACTT+TGG | 0.361268 | 1_4:-21523705 | Msa0155880:CDS |
| TTGACTTGCACAGGCACTTC+GGG | 0.367269 | 1_4:-21523921 | Msa0155880:intron |
| TCTGTGATACCAATGTTTCT+TGG | 0.370921 | 1_4:+21522855 | None:intergenic |
| ACATGATGACCATGTGATAT+TGG | 0.372321 | 1_4:+21523824 | None:intergenic |
| CGGGTGAAACTCTCATGTTT+AGG | 0.373283 | 1_4:-21523902 | Msa0155880:CDS |
| AAGAAGCAGTGAATCTTATC+AGG | 0.393702 | 1_4:-21521960 | Msa0155880:CDS |
| TCAGATGAAACATGCATCAT+AGG | 0.400144 | 1_4:-21523000 | Msa0155880:CDS |
| GGAATCTTTGATACTTTGGT+TGG | 0.403046 | 1_4:-21523701 | Msa0155880:CDS |
| ACAAGAAGCAGCAGAGTGTT+TGG | 0.405610 | 1_4:-21521923 | Msa0155880:CDS |
| GGCGTAGCTTATCAGACAAT+TGG | 0.418185 | 1_4:-21522895 | Msa0155880:CDS |
| GTGATACAAAGAGAGCAAAT+TGG | 0.443813 | 1_4:-21523746 | Msa0155880:CDS |
| GTAAGAAGAAATCATGGAGT+TGG | 0.448595 | 1_4:-21523869 | Msa0155880:CDS |
| ATCATGTGGTGGAGCATGAT+TGG | 0.450402 | 1_4:-21523808 | Msa0155880:CDS |
| AATTATGTTAGTCTCATTTG+AGG | 0.462042 | 1_4:-21523092 | Msa0155880:intron |
| AGAAAGGTAAGAAGAAATCA+TGG | 0.465978 | 1_4:-21523875 | Msa0155880:CDS |
| TGGCTAAGGAAGCATTGGTT+AGG | 0.478204 | 1_4:-21521903 | Msa0155880:CDS |
| TGTGAATCAGGTAATGCAAC+AGG | 0.482738 | 1_4:-21522269 | Msa0155880:intron |
| TCTTGGCAAGCAATGGCATA+TGG | 0.488135 | 1_4:-21522175 | Msa0155880:CDS |
| AGCAGCAGAGTGTTTGGCTA+AGG | 0.497684 | 1_4:-21521917 | Msa0155880:CDS |
| GAGACAGAATTGTGGTACTT+AGG | 0.501693 | 1_4:-21523722 | Msa0155880:CDS |
| TTCTAAAGCTTCAGAACTTG+TGG | 0.505454 | 1_4:-21522237 | Msa0155880:CDS |
| AAAGCTTCAGAACTTGTGGT+TGG | 0.510242 | 1_4:-21522233 | Msa0155880:CDS |
| ATTGACTTGCACAGGCACTT+CGG | 0.511916 | 1_4:-21523922 | Msa0155880:intron |
| AAACACTCTGCTGCTTCTTG+TGG | 0.521856 | 1_4:+21521925 | None:intergenic |
| CTCATGTTTAGGAAATAGAA+AGG | 0.530586 | 1_4:-21523891 | Msa0155880:CDS |
| GTGTTTGGCTAAGGAAGCAT+TGG | 0.535898 | 1_4:-21521908 | Msa0155880:CDS |
| ATCAATCATCCAAGAAACAT+TGG | 0.538131 | 1_4:-21522864 | Msa0155880:CDS |
| GAGTTGGAAGCAAGCCATCA+TGG | 0.546613 | 1_4:-21523853 | Msa0155880:CDS |
| GGCAAGCAATGGCATATGGC+AGG | 0.549047 | 1_4:-21522171 | Msa0155880:intron |
| GAATCTTATCAGGCACATAG+AGG | 0.593854 | 1_4:-21521950 | Msa0155880:CDS |
| AGTTCTGTAATCTCCGATGT+TGG | 0.599281 | 1_4:+21522933 | None:intergenic |
| AGGTAATGCAACAGGTACAA+AGG | 0.604493 | 1_4:-21522261 | Msa0155880:CDS |
| TTTGTGATCTTGGCAAGCAA+TGG | 0.607158 | 1_4:-21522182 | Msa0155880:CDS |
| ATCACATGGTCATCATGTGG+TGG | 0.639046 | 1_4:-21523819 | Msa0155880:CDS |
| GATATTGGCATCATCCATGA+TGG | 0.650715 | 1_4:+21523839 | None:intergenic |
| AAACTCGTGCTAGCCAACAT+CGG | 0.656947 | 1_4:-21522946 | Msa0155880:CDS |
| ACACTCAAGAGAGCATACCT+AGG | 0.689445 | 1_4:-21523054 | Msa0155880:CDS |
| TGGATGATGCCAATATCACA+TGG | 0.692201 | 1_4:-21523833 | Msa0155880:CDS |
| AAATTGGTGAGACAGAATTG+TGG | 0.696148 | 1_4:-21523730 | Msa0155880:CDS |
| AATATCACATGGTCATCATG+TGG | 0.739236 | 1_4:-21523822 | Msa0155880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGAAAACAAATATTTAA+GGG | - | chr1_4:21521951-21521970 | Msa0155880:CDS | 10.0% |
| !! | ATAAGAAAACAAATATTTAA+GGG | - | chr1_4:21521951-21521970 | Msa0155880:CDS | 10.0% |
| !! | CATAAGAAAACAAATATTTA+AGG | - | chr1_4:21521950-21521969 | Msa0155880:CDS | 15.0% |
| !! | TTTAAGGGAAAAATAATATA+TGG | - | chr1_4:21521966-21521985 | Msa0155880:CDS | 15.0% |
| !! | CATAAGAAAACAAATATTTA+AGG | - | chr1_4:21521950-21521969 | Msa0155880:CDS | 15.0% |
| !! | TTTAAGGGAAAAATAATATA+TGG | - | chr1_4:21521966-21521985 | Msa0155880:CDS | 15.0% |
| !! | TAAAGAACATAATCTCATAA+GGG | + | chr1_4:21521998-21522017 | None:intergenic | 20.0% |
| !! | ATAAAGAACATAATCTCATA+AGG | + | chr1_4:21521999-21522018 | None:intergenic | 20.0% |
| !! | TACTTTAATGAAGAGTAAAA+GGG | - | chr1_4:21522751-21522770 | Msa0155880:intron | 20.0% |
| !! | GAGAAAATAGGAAATTATAT+GGG | + | chr1_4:21522816-21522835 | None:intergenic | 20.0% |
| !! | TGAGAAAATAGGAAATTATA+TGG | + | chr1_4:21522817-21522836 | None:intergenic | 20.0% |
| !!! | TCTTTTTGAAATGTTTAGAA+TGG | - | chr1_4:21523170-21523189 | Msa0155880:intron | 20.0% |
| !! | TAATATTGTTATATTGAGAG+AGG | + | chr1_4:21523576-21523595 | None:intergenic | 20.0% |
| !!! | CTATAAATGAGTATATGTTT+TGG | - | chr1_4:21523626-21523645 | Msa0155880:intron | 20.0% |
| !!! | TTGTAATGGATAAATATCTT+GGG | + | chr1_4:21523831-21523850 | None:intergenic | 20.0% |
| !!! | TTTGTAATGGATAAATATCT+TGG | + | chr1_4:21523832-21523851 | None:intergenic | 20.0% |
| !! | GAATGATTAAACATGAAATA+TGG | + | chr1_4:21524105-21524124 | None:intergenic | 20.0% |
| !! | TAAAGAACATAATCTCATAA+GGG | + | chr1_4:21521998-21522017 | None:intergenic | 20.0% |
| !! | ATAAAGAACATAATCTCATA+AGG | + | chr1_4:21521999-21522018 | None:intergenic | 20.0% |
| !! | TACTTTAATGAAGAGTAAAA+GGG | - | chr1_4:21522751-21522770 | Msa0155880:intron | 20.0% |
| !! | GAGAAAATAGGAAATTATAT+GGG | + | chr1_4:21522816-21522835 | None:intergenic | 20.0% |
| !! | TGAGAAAATAGGAAATTATA+TGG | + | chr1_4:21522817-21522836 | None:intergenic | 20.0% |
| !!! | TCTTTTTGAAATGTTTAGAA+TGG | - | chr1_4:21523170-21523189 | Msa0155880:intron | 20.0% |
| !! | TAATATTGTTATATTGAGAG+AGG | + | chr1_4:21523576-21523595 | None:intergenic | 20.0% |
| !!! | CTATAAATGAGTATATGTTT+TGG | - | chr1_4:21523626-21523645 | Msa0155880:intron | 20.0% |
| !!! | TTGTAATGGATAAATATCTT+GGG | + | chr1_4:21523831-21523850 | None:intergenic | 20.0% |
| !!! | TTTGTAATGGATAAATATCT+TGG | + | chr1_4:21523832-21523851 | None:intergenic | 20.0% |
| !! | GAATGATTAAACATGAAATA+TGG | + | chr1_4:21524105-21524124 | None:intergenic | 20.0% |
| !!! | ATAATTGGCTTGCAAATATT+TGG | + | chr1_4:21522307-21522326 | None:intergenic | 25.0% |
| ! | GAGATTCTTGTCAAAATAAT+TGG | + | chr1_4:21522322-21522341 | None:intergenic | 25.0% |
| !! | TCTATTTTCATAAGCTATCT+TGG | - | chr1_4:21522564-21522583 | Msa0155880:intron | 25.0% |
| ! | GAAAGTTTATGGATATAAGA+TGG | - | chr1_4:21522586-21522605 | Msa0155880:intron | 25.0% |
| ! | GTACTTTAATGAAGAGTAAA+AGG | - | chr1_4:21522750-21522769 | Msa0155880:intron | 25.0% |
| !! | AATTATGTTAGTCTCATTTG+AGG | - | chr1_4:21522879-21522898 | Msa0155880:CDS | 25.0% |
| ! | ACATCTGTGATGATAATAAA+TGG | - | chr1_4:21522998-21523017 | Msa0155880:CDS | 25.0% |
| ! | TAAGCTATGAAAATAGCTTA+TGG | - | chr1_4:21523355-21523374 | Msa0155880:intron | 25.0% |
| !!! | TCCATCTTTTTCATTCAATT+GGG | - | chr1_4:21523523-21523542 | Msa0155880:intron | 25.0% |
| !!! | TGTAATGGATAAATATCTTG+GGG | + | chr1_4:21523830-21523849 | None:intergenic | 25.0% |
| !!! | TTACTCGGAATTTTTTGTAA+TGG | + | chr1_4:21523845-21523864 | None:intergenic | 25.0% |
| !!! | ATAATTGGCTTGCAAATATT+TGG | + | chr1_4:21522307-21522326 | None:intergenic | 25.0% |
| ! | GAGATTCTTGTCAAAATAAT+TGG | + | chr1_4:21522322-21522341 | None:intergenic | 25.0% |
| !! | TCTATTTTCATAAGCTATCT+TGG | - | chr1_4:21522564-21522583 | Msa0155880:intron | 25.0% |
| ! | GAAAGTTTATGGATATAAGA+TGG | - | chr1_4:21522586-21522605 | Msa0155880:intron | 25.0% |
| ! | GTACTTTAATGAAGAGTAAA+AGG | - | chr1_4:21522750-21522769 | Msa0155880:intron | 25.0% |
| !! | AATTATGTTAGTCTCATTTG+AGG | - | chr1_4:21522879-21522898 | Msa0155880:CDS | 25.0% |
| ! | ACATCTGTGATGATAATAAA+TGG | - | chr1_4:21522998-21523017 | Msa0155880:CDS | 25.0% |
| ! | TAAGCTATGAAAATAGCTTA+TGG | - | chr1_4:21523355-21523374 | Msa0155880:intron | 25.0% |
| !!! | TCCATCTTTTTCATTCAATT+GGG | - | chr1_4:21523523-21523542 | Msa0155880:intron | 25.0% |
| !!! | TGTAATGGATAAATATCTTG+GGG | + | chr1_4:21523830-21523849 | None:intergenic | 25.0% |
| !!! | TTACTCGGAATTTTTTGTAA+TGG | + | chr1_4:21523845-21523864 | None:intergenic | 25.0% |
| ! | AGATTTTCACTTCAAAGTCA+AGG | - | chr1_4:21521869-21521888 | Msa0155880:CDS | 30.0% |
| CTTCATGTAACAATGGAATA+AGG | + | chr1_4:21521917-21521936 | None:intergenic | 30.0% | |
| CTTATTCCATTGTTACATGA+AGG | - | chr1_4:21521915-21521934 | Msa0155880:CDS | 30.0% | |
| CTCATGTTTAGGAAATAGAA+AGG | - | chr1_4:21522080-21522099 | Msa0155880:intron | 30.0% | |
| AGAAAGGTAAGAAGAAATCA+TGG | - | chr1_4:21522096-21522115 | Msa0155880:intron | 30.0% | |
| CTTAGGAATCTTTGATACTT+TGG | - | chr1_4:21522266-21522285 | Msa0155880:intron | 30.0% | |
| ! | TTTTGACAAGAATCTCAAAG+AGG | - | chr1_4:21522326-21522345 | Msa0155880:intron | 30.0% |
| AAGCTATCTTGGAAAGTTTA+TGG | - | chr1_4:21522575-21522594 | Msa0155880:intron | 30.0% | |
| GTCTTTGCTTGTTTACTTAT+TGG | - | chr1_4:21522726-21522745 | Msa0155880:intron | 30.0% | |
| GCAATAAATCACAATGCATT+TGG | + | chr1_4:21522778-21522797 | None:intergenic | 30.0% | |
| ! | CCAGAAGTATATGAGAAAAT+AGG | + | chr1_4:21522828-21522847 | None:intergenic | 30.0% |
| ! | CCTATTTTCTCATATACTTC+TGG | - | chr1_4:21522825-21522844 | Msa0155880:intron | 30.0% |
| ATCAATCATCCAAGAAACAT+TGG | - | chr1_4:21523107-21523126 | Msa0155880:intron | 30.0% | |
| CTTGTCATAAGCATTTAAGA+TGG | + | chr1_4:21523416-21523435 | None:intergenic | 30.0% | |
| !! | ACTGATTTGTTTCCTACTTA+GGG | + | chr1_4:21523472-21523491 | None:intergenic | 30.0% |
| !! | AACTGATTTGTTTCCTACTT+AGG | + | chr1_4:21523473-21523492 | None:intergenic | 30.0% |
| !! | CTCCATCTTTTTCATTCAAT+TGG | - | chr1_4:21523522-21523541 | Msa0155880:intron | 30.0% |
| TCCCAATTGAATGAAAAAGA+TGG | + | chr1_4:21523527-21523546 | None:intergenic | 30.0% | |
| TTGGCAGTCACATTTAATAA+TGG | - | chr1_4:21523645-21523664 | Msa0155880:intron | 30.0% | |
| AAAGTAATAGCATGTGAATC+AGG | - | chr1_4:21523690-21523709 | Msa0155880:CDS | 30.0% | |
| ! | TAGTACTGAATTTGTGATCT+TGG | - | chr1_4:21523779-21523798 | Msa0155880:CDS | 30.0% |
| ! | ATCCTCGAAAATGTTTTACT+CGG | + | chr1_4:21523860-21523879 | None:intergenic | 30.0% |
| TTCATCACCTACAAATACAT+AGG | + | chr1_4:21523986-21524005 | None:intergenic | 30.0% | |
| ! | AGATTTTCACTTCAAAGTCA+AGG | - | chr1_4:21521869-21521888 | Msa0155880:CDS | 30.0% |
| CTTCATGTAACAATGGAATA+AGG | + | chr1_4:21521917-21521936 | None:intergenic | 30.0% | |
| CTTATTCCATTGTTACATGA+AGG | - | chr1_4:21521915-21521934 | Msa0155880:CDS | 30.0% | |
| CTCATGTTTAGGAAATAGAA+AGG | - | chr1_4:21522080-21522099 | Msa0155880:intron | 30.0% | |
| AGAAAGGTAAGAAGAAATCA+TGG | - | chr1_4:21522096-21522115 | Msa0155880:intron | 30.0% | |
| CTTAGGAATCTTTGATACTT+TGG | - | chr1_4:21522266-21522285 | Msa0155880:intron | 30.0% | |
| ! | TTTTGACAAGAATCTCAAAG+AGG | - | chr1_4:21522326-21522345 | Msa0155880:intron | 30.0% |
| AAGCTATCTTGGAAAGTTTA+TGG | - | chr1_4:21522575-21522594 | Msa0155880:intron | 30.0% | |
| GTCTTTGCTTGTTTACTTAT+TGG | - | chr1_4:21522726-21522745 | Msa0155880:intron | 30.0% | |
| GCAATAAATCACAATGCATT+TGG | + | chr1_4:21522778-21522797 | None:intergenic | 30.0% | |
| ! | CCAGAAGTATATGAGAAAAT+AGG | + | chr1_4:21522828-21522847 | None:intergenic | 30.0% |
| ! | CCTATTTTCTCATATACTTC+TGG | - | chr1_4:21522825-21522844 | Msa0155880:intron | 30.0% |
| ATCAATCATCCAAGAAACAT+TGG | - | chr1_4:21523107-21523126 | Msa0155880:intron | 30.0% | |
| CTTGTCATAAGCATTTAAGA+TGG | + | chr1_4:21523416-21523435 | None:intergenic | 30.0% | |
| !! | ACTGATTTGTTTCCTACTTA+GGG | + | chr1_4:21523472-21523491 | None:intergenic | 30.0% |
| !! | AACTGATTTGTTTCCTACTT+AGG | + | chr1_4:21523473-21523492 | None:intergenic | 30.0% |
| !! | CTCCATCTTTTTCATTCAAT+TGG | - | chr1_4:21523522-21523541 | Msa0155880:intron | 30.0% |
| TCCCAATTGAATGAAAAAGA+TGG | + | chr1_4:21523527-21523546 | None:intergenic | 30.0% | |
| TTGGCAGTCACATTTAATAA+TGG | - | chr1_4:21523645-21523664 | Msa0155880:intron | 30.0% | |
| AAAGTAATAGCATGTGAATC+AGG | - | chr1_4:21523690-21523709 | Msa0155880:CDS | 30.0% | |
| ! | TAGTACTGAATTTGTGATCT+TGG | - | chr1_4:21523779-21523798 | Msa0155880:CDS | 30.0% |
| ! | ATCCTCGAAAATGTTTTACT+CGG | + | chr1_4:21523860-21523879 | None:intergenic | 30.0% |
| TTCATCACCTACAAATACAT+AGG | + | chr1_4:21523986-21524005 | None:intergenic | 30.0% | |
| AAAGAGCCTTCATGTAACAA+TGG | + | chr1_4:21521924-21521943 | None:intergenic | 35.0% | |
| !! | GAATTTCTATTGACTTGCAC+AGG | - | chr1_4:21522041-21522060 | Msa0155880:intron | 35.0% |
| GTAAGAAGAAATCATGGAGT+TGG | - | chr1_4:21522102-21522121 | Msa0155880:intron | 35.0% | |
| ACATGATGACCATGTGATAT+TGG | + | chr1_4:21522150-21522169 | None:intergenic | 35.0% | |
| AATATCACATGGTCATCATG+TGG | - | chr1_4:21522149-21522168 | Msa0155880:intron | 35.0% | |
| GTGATACAAAGAGAGCAAAT+TGG | - | chr1_4:21522225-21522244 | Msa0155880:CDS | 35.0% | |
| AAATTGGTGAGACAGAATTG+TGG | - | chr1_4:21522241-21522260 | Msa0155880:CDS | 35.0% | |
| GGAATCTTTGATACTTTGGT+TGG | - | chr1_4:21522270-21522289 | Msa0155880:intron | 35.0% | |
| !! | GCTCAAAAGCATCATTGATT+TGG | + | chr1_4:21522407-21522426 | None:intergenic | 35.0% |
| ! | ATCAATGATGCTTTTGAGCT+TGG | - | chr1_4:21522408-21522427 | Msa0155880:intron | 35.0% |
| ! | TCAATGATGCTTTTGAGCTT+GGG | - | chr1_4:21522409-21522428 | Msa0155880:intron | 35.0% |
| CTCGAATGGAAGAACAAAAT+AGG | - | chr1_4:21522437-21522456 | Msa0155880:intron | 35.0% | |
| AGTCTGACAAGTACTTATGT+CGG | - | chr1_4:21522656-21522675 | Msa0155880:intron | 35.0% | |
| !!! | TGATCTTTGTTTTTGCACCT+AGG | + | chr1_4:21522937-21522956 | None:intergenic | 35.0% |
| TCAGATGAAACATGCATCAT+AGG | - | chr1_4:21522971-21522990 | Msa0155880:CDS | 35.0% | |
| ! | AGAACTGTTTTGTGTAGAGA+TGG | - | chr1_4:21523055-21523074 | Msa0155880:CDS | 35.0% |
| TCTGTGATACCAATGTTTCT+TGG | + | chr1_4:21523119-21523138 | None:intergenic | 35.0% | |
| !!! | TGGTATCACAGACTTTTTTC+AGG | - | chr1_4:21523127-21523146 | Msa0155880:intron | 35.0% |
| !! | AATGGCTATGTCGATTCATT+TGG | - | chr1_4:21523188-21523207 | Msa0155880:intron | 35.0% |
| !! | ATGGCTATGTCGATTCATTT+GGG | - | chr1_4:21523189-21523208 | Msa0155880:intron | 35.0% |
| AAGCAGTATTAGGTCATGTT+TGG | - | chr1_4:21523219-21523238 | Msa0155880:intron | 35.0% | |
| AGATGGTTTAGAAGAGCTTA+TGG | + | chr1_4:21523399-21523418 | None:intergenic | 35.0% | |
| ! | TTTCCTACTTAGGGTTTGTT+TGG | + | chr1_4:21523463-21523482 | None:intergenic | 35.0% |
| !! | TTCTAAAGCTTCAGAACTTG+TGG | - | chr1_4:21523734-21523753 | Msa0155880:CDS | 35.0% |
| AACTTGTGGTTGGAAGTTAT+TGG | - | chr1_4:21523748-21523767 | Msa0155880:CDS | 35.0% | |
| ! | TTCCGAGTAAAACATTTTCG+AGG | - | chr1_4:21523855-21523874 | Msa0155880:CDS | 35.0% |
| TGAGTCTCCTATGTATTTGT+AGG | - | chr1_4:21523976-21523995 | Msa0155880:intron | 35.0% | |
| TGATAAGATTCACTGCTTCT+TGG | + | chr1_4:21524012-21524031 | None:intergenic | 35.0% | |
| AAGAAGCAGTGAATCTTATC+AGG | - | chr1_4:21524011-21524030 | Msa0155880:intron | 35.0% | |
| AAAGAGCCTTCATGTAACAA+TGG | + | chr1_4:21521924-21521943 | None:intergenic | 35.0% | |
| !! | GAATTTCTATTGACTTGCAC+AGG | - | chr1_4:21522041-21522060 | Msa0155880:intron | 35.0% |
| GTAAGAAGAAATCATGGAGT+TGG | - | chr1_4:21522102-21522121 | Msa0155880:intron | 35.0% | |
| ACATGATGACCATGTGATAT+TGG | + | chr1_4:21522150-21522169 | None:intergenic | 35.0% | |
| AATATCACATGGTCATCATG+TGG | - | chr1_4:21522149-21522168 | Msa0155880:intron | 35.0% | |
| GTGATACAAAGAGAGCAAAT+TGG | - | chr1_4:21522225-21522244 | Msa0155880:CDS | 35.0% | |
| AAATTGGTGAGACAGAATTG+TGG | - | chr1_4:21522241-21522260 | Msa0155880:CDS | 35.0% | |
| GGAATCTTTGATACTTTGGT+TGG | - | chr1_4:21522270-21522289 | Msa0155880:intron | 35.0% | |
| !! | GCTCAAAAGCATCATTGATT+TGG | + | chr1_4:21522407-21522426 | None:intergenic | 35.0% |
| ! | ATCAATGATGCTTTTGAGCT+TGG | - | chr1_4:21522408-21522427 | Msa0155880:intron | 35.0% |
| ! | TCAATGATGCTTTTGAGCTT+GGG | - | chr1_4:21522409-21522428 | Msa0155880:intron | 35.0% |
| CTCGAATGGAAGAACAAAAT+AGG | - | chr1_4:21522437-21522456 | Msa0155880:intron | 35.0% | |
| AGTCTGACAAGTACTTATGT+CGG | - | chr1_4:21522656-21522675 | Msa0155880:intron | 35.0% | |
| !!! | TGATCTTTGTTTTTGCACCT+AGG | + | chr1_4:21522937-21522956 | None:intergenic | 35.0% |
| TCAGATGAAACATGCATCAT+AGG | - | chr1_4:21522971-21522990 | Msa0155880:CDS | 35.0% | |
| ! | AGAACTGTTTTGTGTAGAGA+TGG | - | chr1_4:21523055-21523074 | Msa0155880:CDS | 35.0% |
| TCTGTGATACCAATGTTTCT+TGG | + | chr1_4:21523119-21523138 | None:intergenic | 35.0% | |
| !!! | TGGTATCACAGACTTTTTTC+AGG | - | chr1_4:21523127-21523146 | Msa0155880:intron | 35.0% |
| !! | AATGGCTATGTCGATTCATT+TGG | - | chr1_4:21523188-21523207 | Msa0155880:intron | 35.0% |
| !! | ATGGCTATGTCGATTCATTT+GGG | - | chr1_4:21523189-21523208 | Msa0155880:intron | 35.0% |
| AAGCAGTATTAGGTCATGTT+TGG | - | chr1_4:21523219-21523238 | Msa0155880:intron | 35.0% | |
| AGATGGTTTAGAAGAGCTTA+TGG | + | chr1_4:21523399-21523418 | None:intergenic | 35.0% | |
| ! | TTTCCTACTTAGGGTTTGTT+TGG | + | chr1_4:21523463-21523482 | None:intergenic | 35.0% |
| !! | TTCTAAAGCTTCAGAACTTG+TGG | - | chr1_4:21523734-21523753 | Msa0155880:CDS | 35.0% |
| AACTTGTGGTTGGAAGTTAT+TGG | - | chr1_4:21523748-21523767 | Msa0155880:CDS | 35.0% | |
| ! | TTCCGAGTAAAACATTTTCG+AGG | - | chr1_4:21523855-21523874 | Msa0155880:CDS | 35.0% |
| TGAGTCTCCTATGTATTTGT+AGG | - | chr1_4:21523976-21523995 | Msa0155880:intron | 35.0% | |
| TGATAAGATTCACTGCTTCT+TGG | + | chr1_4:21524012-21524031 | None:intergenic | 35.0% | |
| AAGAAGCAGTGAATCTTATC+AGG | - | chr1_4:21524011-21524030 | Msa0155880:intron | 35.0% | |
| GATATTGGCATCATCCATGA+TGG | + | chr1_4:21522135-21522154 | None:intergenic | 40.0% | |
| TGGATGATGCCAATATCACA+TGG | - | chr1_4:21522138-21522157 | Msa0155880:intron | 40.0% | |
| GTGGAGCATGATTGGATTAA+TGG | - | chr1_4:21522171-21522190 | Msa0155880:intron | 40.0% | |
| GAGACAGAATTGTGGTACTT+AGG | - | chr1_4:21522249-21522268 | Msa0155880:CDS | 40.0% | |
| TGCTCTCTTGAGTGTTTCTT+TGG | + | chr1_4:21522912-21522931 | None:intergenic | 40.0% | |
| AGTTCTGTAATCTCCGATGT+TGG | + | chr1_4:21523041-21523060 | None:intergenic | 40.0% | |
| !! | ATGTCGATTCATTTGGGAGA+TGG | - | chr1_4:21523195-21523214 | Msa0155880:intron | 40.0% |
| AGTCCAAACAAACCCTAAGT+AGG | - | chr1_4:21523457-21523476 | Msa0155880:intron | 40.0% | |
| TGTGAATCAGGTAATGCAAC+AGG | - | chr1_4:21523702-21523721 | Msa0155880:CDS | 40.0% | |
| AGGTAATGCAACAGGTACAA+AGG | - | chr1_4:21523710-21523729 | Msa0155880:CDS | 40.0% | |
| AAAGCTTCAGAACTTGTGGT+TGG | - | chr1_4:21523738-21523757 | Msa0155880:CDS | 40.0% | |
| TTTGTGATCTTGGCAAGCAA+TGG | - | chr1_4:21523789-21523808 | Msa0155880:CDS | 40.0% | |
| GAATCTTATCAGGCACATAG+AGG | - | chr1_4:21524021-21524040 | Msa0155880:intron | 40.0% | |
| GATATTGGCATCATCCATGA+TGG | + | chr1_4:21522135-21522154 | None:intergenic | 40.0% | |
| TGGATGATGCCAATATCACA+TGG | - | chr1_4:21522138-21522157 | Msa0155880:intron | 40.0% | |
| GTGGAGCATGATTGGATTAA+TGG | - | chr1_4:21522171-21522190 | Msa0155880:intron | 40.0% | |
| GAGACAGAATTGTGGTACTT+AGG | - | chr1_4:21522249-21522268 | Msa0155880:CDS | 40.0% | |
| TGCTCTCTTGAGTGTTTCTT+TGG | + | chr1_4:21522912-21522931 | None:intergenic | 40.0% | |
| AGTTCTGTAATCTCCGATGT+TGG | + | chr1_4:21523041-21523060 | None:intergenic | 40.0% | |
| !! | ATGTCGATTCATTTGGGAGA+TGG | - | chr1_4:21523195-21523214 | Msa0155880:intron | 40.0% |
| AGTCCAAACAAACCCTAAGT+AGG | - | chr1_4:21523457-21523476 | Msa0155880:intron | 40.0% | |
| TGTGAATCAGGTAATGCAAC+AGG | - | chr1_4:21523702-21523721 | Msa0155880:CDS | 40.0% | |
| AGGTAATGCAACAGGTACAA+AGG | - | chr1_4:21523710-21523729 | Msa0155880:CDS | 40.0% | |
| AAAGCTTCAGAACTTGTGGT+TGG | - | chr1_4:21523738-21523757 | Msa0155880:CDS | 40.0% | |
| TTTGTGATCTTGGCAAGCAA+TGG | - | chr1_4:21523789-21523808 | Msa0155880:CDS | 40.0% | |
| GAATCTTATCAGGCACATAG+AGG | - | chr1_4:21524021-21524040 | Msa0155880:intron | 40.0% | |
| !! | ATTGACTTGCACAGGCACTT+CGG | - | chr1_4:21522049-21522068 | Msa0155880:intron | 45.0% |
| CGGGTGAAACTCTCATGTTT+AGG | - | chr1_4:21522069-21522088 | Msa0155880:intron | 45.0% | |
| ATCACATGGTCATCATGTGG+TGG | - | chr1_4:21522152-21522171 | Msa0155880:intron | 45.0% | |
| ! | ATCATGTGGTGGAGCATGAT+TGG | - | chr1_4:21522163-21522182 | Msa0155880:intron | 45.0% |
| ! | ACACTCAAGAGAGCATACCT+AGG | - | chr1_4:21522917-21522936 | Msa0155880:CDS | 45.0% |
| AAACTCGTGCTAGCCAACAT+CGG | - | chr1_4:21523025-21523044 | Msa0155880:CDS | 45.0% | |
| GGCGTAGCTTATCAGACAAT+TGG | - | chr1_4:21523076-21523095 | Msa0155880:CDS | 45.0% | |
| GGGAGATGGAAAGCAGTATT+AGG | - | chr1_4:21523209-21523228 | Msa0155880:intron | 45.0% | |
| GCTAATTCAGTGCTGCATTC+TGG | + | chr1_4:21523503-21523522 | None:intergenic | 45.0% | |
| TCTTGGCAAGCAATGGCATA+TGG | - | chr1_4:21523796-21523815 | Msa0155880:CDS | 45.0% | |
| ! | AAACACTCTGCTGCTTCTTG+TGG | + | chr1_4:21524049-21524068 | None:intergenic | 45.0% |
| ! | ACAAGAAGCAGCAGAGTGTT+TGG | - | chr1_4:21524048-21524067 | Msa0155880:intron | 45.0% |
| ! | GTGTTTGGCTAAGGAAGCAT+TGG | - | chr1_4:21524063-21524082 | Msa0155880:intron | 45.0% |
| !! | TGGCTAAGGAAGCATTGGTT+AGG | - | chr1_4:21524068-21524087 | Msa0155880:intron | 45.0% |
| !! | ATTGACTTGCACAGGCACTT+CGG | - | chr1_4:21522049-21522068 | Msa0155880:intron | 45.0% |
| CGGGTGAAACTCTCATGTTT+AGG | - | chr1_4:21522069-21522088 | Msa0155880:intron | 45.0% | |
| ATCACATGGTCATCATGTGG+TGG | - | chr1_4:21522152-21522171 | Msa0155880:intron | 45.0% | |
| ! | ATCATGTGGTGGAGCATGAT+TGG | - | chr1_4:21522163-21522182 | Msa0155880:intron | 45.0% |
| ! | ACACTCAAGAGAGCATACCT+AGG | - | chr1_4:21522917-21522936 | Msa0155880:CDS | 45.0% |
| AAACTCGTGCTAGCCAACAT+CGG | - | chr1_4:21523025-21523044 | Msa0155880:CDS | 45.0% | |
| GGCGTAGCTTATCAGACAAT+TGG | - | chr1_4:21523076-21523095 | Msa0155880:CDS | 45.0% | |
| GGGAGATGGAAAGCAGTATT+AGG | - | chr1_4:21523209-21523228 | Msa0155880:intron | 45.0% | |
| GCTAATTCAGTGCTGCATTC+TGG | + | chr1_4:21523503-21523522 | None:intergenic | 45.0% | |
| TCTTGGCAAGCAATGGCATA+TGG | - | chr1_4:21523796-21523815 | Msa0155880:CDS | 45.0% | |
| ! | AAACACTCTGCTGCTTCTTG+TGG | + | chr1_4:21524049-21524068 | None:intergenic | 45.0% |
| ! | ACAAGAAGCAGCAGAGTGTT+TGG | - | chr1_4:21524048-21524067 | Msa0155880:intron | 45.0% |
| ! | GTGTTTGGCTAAGGAAGCAT+TGG | - | chr1_4:21524063-21524082 | Msa0155880:intron | 45.0% |
| !! | TGGCTAAGGAAGCATTGGTT+AGG | - | chr1_4:21524068-21524087 | Msa0155880:intron | 45.0% |
| !!! | GTTTTTTTTAAAAAATTAAT+AGG | - | chr1_4:21523932-21523951 | Msa0155880:intron | 5.0% |
| !!! | GTTTTTTTTAAAAAATTAAT+AGG | - | chr1_4:21523932-21523951 | Msa0155880:intron | 5.0% |
| !! | TTGACTTGCACAGGCACTTC+GGG | - | chr1_4:21522050-21522069 | Msa0155880:intron | 50.0% |
| GAGTTGGAAGCAAGCCATCA+TGG | - | chr1_4:21522118-21522137 | Msa0155880:intron | 50.0% | |
| ! | AGCAGCAGAGTGTTTGGCTA+AGG | - | chr1_4:21524054-21524073 | Msa0155880:intron | 50.0% |
| !! | TTGACTTGCACAGGCACTTC+GGG | - | chr1_4:21522050-21522069 | Msa0155880:intron | 50.0% |
| GAGTTGGAAGCAAGCCATCA+TGG | - | chr1_4:21522118-21522137 | Msa0155880:intron | 50.0% | |
| ! | AGCAGCAGAGTGTTTGGCTA+AGG | - | chr1_4:21524054-21524073 | Msa0155880:intron | 50.0% |
| GAGCTTGGGAGACTCTCGAA+TGG | - | chr1_4:21522423-21522442 | Msa0155880:intron | 55.0% | |
| GGCAAGCAATGGCATATGGC+AGG | - | chr1_4:21523800-21523819 | Msa0155880:CDS | 55.0% | |
| GAGCTTGGGAGACTCTCGAA+TGG | - | chr1_4:21522423-21522442 | Msa0155880:intron | 55.0% | |
| GGCAAGCAATGGCATATGGC+AGG | - | chr1_4:21523800-21523819 | Msa0155880:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 21521858 | 21524135 | 21521858 | ID=Msa0155880;Name=Msa0155880 |
| chr1_4 | mRNA | 21521858 | 21524135 | 21521858 | ID=Msa0155880-mRNA-1;Parent=Msa0155880;Name=Msa0155880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.2|1|1|1|5|0|274 |
| chr1_4 | exon | 21524103 | 21524135 | 21524103 | ID=Msa0155880-mRNA-1:exon:7787;Parent=Msa0155880-mRNA-1 |
| chr1_4 | exon | 21523646 | 21523930 | 21523646 | ID=Msa0155880-mRNA-1:exon:7786;Parent=Msa0155880-mRNA-1 |
| chr1_4 | exon | 21522845 | 21523103 | 21522845 | ID=Msa0155880-mRNA-1:exon:7785;Parent=Msa0155880-mRNA-1 |
| chr1_4 | exon | 21522172 | 21522281 | 21522172 | ID=Msa0155880-mRNA-1:exon:7784;Parent=Msa0155880-mRNA-1 |
| chr1_4 | exon | 21521858 | 21521995 | 21521858 | ID=Msa0155880-mRNA-1:exon:7783;Parent=Msa0155880-mRNA-1 |
| chr1_4 | CDS | 21524103 | 21524135 | 21524103 | ID=Msa0155880-mRNA-1:cds;Parent=Msa0155880-mRNA-1 |
| chr1_4 | CDS | 21523646 | 21523930 | 21523646 | ID=Msa0155880-mRNA-1:cds;Parent=Msa0155880-mRNA-1 |
| chr1_4 | CDS | 21522845 | 21523103 | 21522845 | ID=Msa0155880-mRNA-1:cds;Parent=Msa0155880-mRNA-1 |
| chr1_4 | CDS | 21522172 | 21522281 | 21522172 | ID=Msa0155880-mRNA-1:cds;Parent=Msa0155880-mRNA-1 |
| chr1_4 | CDS | 21521858 | 21521995 | 21521858 | ID=Msa0155880-mRNA-1:cds;Parent=Msa0155880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
