AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0015460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015460 MtrunA17_Chr1g0166481 96.715 274 9 0 1 274 1 274 0.0 551
Msa0015460 MtrunA17_Chr1g0187481 60.072 278 107 1 1 274 1 278 2.54e-119 342
Msa0015460 MtrunA17_Chr8g0360351 37.891 256 129 6 41 273 33 281 3.70e-39 138
Msa0015460 MtrunA17_Chr2g0279151 34.457 267 145 5 30 273 21 280 1.69e-34 125
Msa0015460 MtrunA17_Chr4g0050381 32.143 280 160 5 17 273 4 276 5.14e-34 124
Msa0015460 MtrunA17_Chr2g0317021 36.328 256 133 6 41 273 84 332 4.68e-33 123
Msa0015460 MtrunA17_Chr5g0426141 35.398 226 121 4 71 273 58 281 4.67e-32 119
Msa0015460 MtrunA17_Chr3g0115851 32.743 226 127 4 71 273 58 281 5.53e-28 108
Msa0015460 MtrunA17_Chr4g0051661 32.031 256 143 5 41 273 150 397 3.31e-25 103
Msa0015460 MtrunA17_Chr1g0150451 28.837 215 132 3 80 273 109 323 3.63e-24 99.4
Msa0015460 MtrunA17_Chr3g0136711 28.372 215 133 3 80 273 66 280 4.84e-23 95.9
Msa0015460 MtrunA17_Chr1g0212961 26.728 217 134 6 79 274 126 338 1.01e-16 79.0
Msa0015460 MtrunA17_Chr3g0126511 26.840 231 144 5 67 274 113 341 5.12e-14 71.2
Msa0015460 MtrunA17_Chr5g0407161 26.104 249 148 9 59 273 99 345 2.10e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015460 AT3G23360.1 43.369 279 132 7 1 273 1 259 8.87e-71 219
Msa0015460 AT4G28400.3 35.938 256 134 5 41 273 12 260 5.15e-38 134
Msa0015460 AT4G28400.1 35.938 256 134 5 41 273 34 282 8.73e-38 134
Msa0015460 AT2G20630.1 34.375 256 138 5 41 273 30 278 1.24e-37 134
Msa0015460 AT2G20630.2 33.984 256 139 5 41 273 30 278 2.98e-35 128
Msa0015460 AT3G15260.2 33.574 277 153 7 20 273 20 288 1.17e-34 127
Msa0015460 AT3G15260.1 33.574 277 153 7 20 273 20 288 1.17e-34 127
Msa0015460 AT1G22280.1 34.222 225 123 4 72 273 58 280 5.21e-30 114
Msa0015460 AT1G22280.3 33.766 231 122 5 72 273 58 286 2.86e-29 112
Msa0015460 AT1G78200.1 34.274 248 135 6 52 273 37 282 1.02e-28 110
Msa0015460 AT1G78200.3 34.274 248 135 6 52 273 37 282 1.02e-28 110
Msa0015460 AT1G78200.2 34.274 248 135 6 52 273 37 282 1.02e-28 110
Msa0015460 AT1G78200.5 35.111 225 118 6 75 273 15 237 1.03e-28 110
Msa0015460 AT1G78200.4 35.111 225 118 6 75 273 15 237 1.03e-28 110
Msa0015460 AT1G34750.2 30.496 282 171 4 15 273 2 281 1.48e-27 107
Msa0015460 AT1G34750.1 30.496 282 171 4 15 273 2 281 1.48e-27 107
Msa0015460 AT1G34750.3 30.496 282 171 4 15 273 2 281 1.48e-27 107
Msa0015460 AT4G31750.2 28.837 215 132 3 80 273 65 279 9.84e-25 100
Msa0015460 AT4G31750.1 28.837 215 132 3 80 273 65 279 1.03e-24 100
Msa0015460 AT4G31750.3 28.837 215 132 3 80 273 65 279 1.03e-24 100
Msa0015460 AT2G34740.1 29.412 255 148 5 43 273 88 334 1.79e-23 98.2
Msa0015460 AT5G24940.1 29.224 219 132 5 77 273 62 279 6.17e-23 97.8
Msa0015460 AT4G28400.2 33.803 213 111 5 41 230 34 239 3.45e-21 90.1
Msa0015460 AT5G10740.1 26.512 215 137 3 80 273 65 279 1.25e-20 90.5
Msa0015460 AT5G10740.2 26.512 215 137 3 80 273 65 279 1.25e-20 90.5
Msa0015460 AT5G53140.1 26.512 215 137 3 80 273 133 347 6.30e-17 80.5
Msa0015460 AT5G53140.2 26.512 215 137 3 80 273 133 347 6.30e-17 80.5
Msa0015460 AT2G34740.3 27.570 214 123 5 41 230 82 287 4.73e-13 68.6
Msa0015460 AT2G34740.2 27.830 212 121 5 43 230 102 305 5.09e-13 68.6
Msa0015460 AT1G34750.4 27.197 239 149 4 15 230 2 238 1.45e-11 63.5
Msa0015460 AT3G51470.2 22.857 245 160 6 57 273 40 283 3.08e-11 63.2
Msa0015460 AT3G51470.1 22.634 243 159 6 59 273 86 327 3.64e-11 63.2

Find 49 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTGGCTTGCAAATATT+TGG 0.170520 1_1:-25004796 None:intergenic
GAGATTCTTGTCAAAATAAT+TGG 0.178491 1_1:-25004811 None:intergenic
TGCTCTCTTGAGTGTTTCTT+TGG 0.223443 1_1:-25005401 None:intergenic
ACATCTGTGATGATAATAAA+TGG 0.273873 1_1:+25005490 Msa0015460:CDS
TGATAAGATTCACTGCTTCT+TGG 0.281632 1_1:-25006501 None:intergenic
AACTTGTGGTTGGAAGTTAT+TGG 0.296396 1_1:+25006240 Msa0015460:CDS
GTGGAGCATGATTGGATTAA+TGG 0.328700 1_1:+25004663 Msa0015460:CDS
GAATGATTAAACATGAAATA+TGG 0.342084 1_1:-25006594 None:intergenic
TAGTACTGAATTTGTGATCT+TGG 0.359368 1_1:+25006271 Msa0015460:CDS
CTTAGGAATCTTTGATACTT+TGG 0.361268 1_1:+25004758 Msa0015460:CDS
TTGACTTGCACAGGCACTTC+GGG 0.367269 1_1:+25004542 Msa0015460:intron
TCTGTGATACCAATGTTTCT+TGG 0.370921 1_1:-25005608 None:intergenic
ACATGATGACCATGTGATAT+TGG 0.372321 1_1:-25004639 None:intergenic
CGGGTGAAACTCTCATGTTT+AGG 0.373283 1_1:+25004561 Msa0015460:CDS
AAGAAGCAGTGAATCTTATC+AGG 0.393702 1_1:+25006503 Msa0015460:CDS
TCAGATGAAACATGCATCAT+AGG 0.400144 1_1:+25005463 Msa0015460:CDS
GGAATCTTTGATACTTTGGT+TGG 0.403046 1_1:+25004762 Msa0015460:CDS
ACAAGAAGCAGCAGAGTGTT+TGG 0.405610 1_1:+25006540 Msa0015460:CDS
GGCGTAGCTTATCAGACAAT+TGG 0.418185 1_1:+25005568 Msa0015460:CDS
GTGATACAAAGAGAGCAAAT+TGG 0.443813 1_1:+25004717 Msa0015460:CDS
GTAAGAAGAAATCATGGAGT+TGG 0.448595 1_1:+25004594 Msa0015460:CDS
ATCATGTGGTGGAGCATGAT+TGG 0.450402 1_1:+25004655 Msa0015460:CDS
AATTATGTTAGTCTCATTTG+AGG 0.462042 1_1:+25005371 Msa0015460:intron
AGAAAGGTAAGAAGAAATCA+TGG 0.465978 1_1:+25004588 Msa0015460:CDS
TGGCTAAGGAAGCATTGGTT+AGG 0.478204 1_1:+25006560 Msa0015460:CDS
TGTGAATCAGGTAATGCAAC+AGG 0.482738 1_1:+25006194 Msa0015460:intron
TCTTGGCAAGCAATGGCATA+TGG 0.488135 1_1:+25006288 Msa0015460:CDS
AGCAGCAGAGTGTTTGGCTA+AGG 0.497684 1_1:+25006546 Msa0015460:CDS
GAGACAGAATTGTGGTACTT+AGG 0.501693 1_1:+25004741 Msa0015460:CDS
TTCTAAAGCTTCAGAACTTG+TGG 0.505454 1_1:+25006226 Msa0015460:CDS
AAAGCTTCAGAACTTGTGGT+TGG 0.510242 1_1:+25006230 Msa0015460:CDS
ATTGACTTGCACAGGCACTT+CGG 0.511916 1_1:+25004541 Msa0015460:intron
AAACACTCTGCTGCTTCTTG+TGG 0.521856 1_1:-25006538 None:intergenic
CTCATGTTTAGGAAATAGAA+AGG 0.530586 1_1:+25004572 Msa0015460:CDS
GTGTTTGGCTAAGGAAGCAT+TGG 0.535898 1_1:+25006555 Msa0015460:CDS
ATCAATCATCCAAGAAACAT+TGG 0.538131 1_1:+25005599 Msa0015460:CDS
GAGTTGGAAGCAAGCCATCA+TGG 0.546613 1_1:+25004610 Msa0015460:CDS
GGCAAGCAATGGCATATGGC+AGG 0.549047 1_1:+25006292 Msa0015460:CDS
GAATCTTATCAGGCACATAG+AGG 0.593854 1_1:+25006513 Msa0015460:CDS
AGTTCTGTAATCTCCGATGT+TGG 0.599281 1_1:-25005530 None:intergenic
AGGTAATGCAACAGGTACAA+AGG 0.604493 1_1:+25006202 Msa0015460:intron
TTTGTGATCTTGGCAAGCAA+TGG 0.607158 1_1:+25006281 Msa0015460:CDS
ATCACATGGTCATCATGTGG+TGG 0.639046 1_1:+25004644 Msa0015460:CDS
GATATTGGCATCATCCATGA+TGG 0.650715 1_1:-25004624 None:intergenic
AAACTCGTGCTAGCCAACAT+CGG 0.656947 1_1:+25005517 Msa0015460:CDS
ACACTCAAGAGAGCATACCT+AGG 0.689445 1_1:+25005409 Msa0015460:CDS
TGGATGATGCCAATATCACA+TGG 0.692201 1_1:+25004630 Msa0015460:CDS
AAATTGGTGAGACAGAATTG+TGG 0.696148 1_1:+25004733 Msa0015460:CDS
AATATCACATGGTCATCATG+TGG 0.739236 1_1:+25004641 Msa0015460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGAAAACAAATATTTAA+GGG + chr1_1:25004443-25004462 Msa0015460:intron 10.0%
!! ATAAGAAAACAAATATTTAA+GGG + chr1_1:25004443-25004462 Msa0015460:intron 10.0%
!! CATAAGAAAACAAATATTTA+AGG + chr1_1:25004442-25004461 Msa0015460:intron 15.0%
!! TTTAAGGGAAAAATAATATA+TGG + chr1_1:25004458-25004477 Msa0015460:intron 15.0%
!! CATAAGAAAACAAATATTTA+AGG + chr1_1:25004442-25004461 Msa0015460:intron 15.0%
!! TTTAAGGGAAAAATAATATA+TGG + chr1_1:25004458-25004477 Msa0015460:intron 15.0%
!! TAAAGAACATAATCTCATAA+GGG - chr1_1:25004490-25004509 None:intergenic 20.0%
!! ATAAAGAACATAATCTCATA+AGG - chr1_1:25004491-25004510 None:intergenic 20.0%
!! TACTTTAATGAAGAGTAAAA+GGG + chr1_1:25005243-25005262 Msa0015460:intron 20.0%
!! GAGAAAATAGGAAATTATAT+GGG - chr1_1:25005308-25005327 None:intergenic 20.0%
!! TGAGAAAATAGGAAATTATA+TGG - chr1_1:25005309-25005328 None:intergenic 20.0%
!!! TCTTTTTGAAATGTTTAGAA+TGG + chr1_1:25005662-25005681 Msa0015460:intron 20.0%
!! TAATATTGTTATATTGAGAG+AGG - chr1_1:25006068-25006087 None:intergenic 20.0%
!!! CTATAAATGAGTATATGTTT+TGG + chr1_1:25006118-25006137 Msa0015460:intron 20.0%
!!! TTGTAATGGATAAATATCTT+GGG - chr1_1:25006323-25006342 None:intergenic 20.0%
!!! TTTGTAATGGATAAATATCT+TGG - chr1_1:25006324-25006343 None:intergenic 20.0%
!! GAATGATTAAACATGAAATA+TGG - chr1_1:25006597-25006616 None:intergenic 20.0%
!! TAAAGAACATAATCTCATAA+GGG - chr1_1:25004490-25004509 None:intergenic 20.0%
!! ATAAAGAACATAATCTCATA+AGG - chr1_1:25004491-25004510 None:intergenic 20.0%
!! TACTTTAATGAAGAGTAAAA+GGG + chr1_1:25005243-25005262 Msa0015460:intron 20.0%
!! GAGAAAATAGGAAATTATAT+GGG - chr1_1:25005308-25005327 None:intergenic 20.0%
!! TGAGAAAATAGGAAATTATA+TGG - chr1_1:25005309-25005328 None:intergenic 20.0%
!!! TCTTTTTGAAATGTTTAGAA+TGG + chr1_1:25005662-25005681 Msa0015460:intron 20.0%
!! TAATATTGTTATATTGAGAG+AGG - chr1_1:25006068-25006087 None:intergenic 20.0%
!!! CTATAAATGAGTATATGTTT+TGG + chr1_1:25006118-25006137 Msa0015460:intron 20.0%
!!! TTGTAATGGATAAATATCTT+GGG - chr1_1:25006323-25006342 None:intergenic 20.0%
!!! TTTGTAATGGATAAATATCT+TGG - chr1_1:25006324-25006343 None:intergenic 20.0%
!! GAATGATTAAACATGAAATA+TGG - chr1_1:25006597-25006616 None:intergenic 20.0%
!!! ATAATTGGCTTGCAAATATT+TGG - chr1_1:25004799-25004818 None:intergenic 25.0%
! GAGATTCTTGTCAAAATAAT+TGG - chr1_1:25004814-25004833 None:intergenic 25.0%
!! TCTATTTTCATAAGCTATCT+TGG + chr1_1:25005056-25005075 Msa0015460:intron 25.0%
! GAAAGTTTATGGATATAAGA+TGG + chr1_1:25005078-25005097 Msa0015460:intron 25.0%
! GTACTTTAATGAAGAGTAAA+AGG + chr1_1:25005242-25005261 Msa0015460:intron 25.0%
!! AATTATGTTAGTCTCATTTG+AGG + chr1_1:25005371-25005390 Msa0015460:intron 25.0%
! ACATCTGTGATGATAATAAA+TGG + chr1_1:25005490-25005509 Msa0015460:CDS 25.0%
! TAAGCTATGAAAATAGCTTA+TGG + chr1_1:25005847-25005866 Msa0015460:intron 25.0%
!!! TCCATCTTTTTCATTCAATT+GGG + chr1_1:25006015-25006034 Msa0015460:intron 25.0%
!!! TGTAATGGATAAATATCTTG+GGG - chr1_1:25006322-25006341 None:intergenic 25.0%
!!! TTACTCGGAATTTTTTGTAA+TGG - chr1_1:25006337-25006356 None:intergenic 25.0%
!!! ATAATTGGCTTGCAAATATT+TGG - chr1_1:25004799-25004818 None:intergenic 25.0%
! GAGATTCTTGTCAAAATAAT+TGG - chr1_1:25004814-25004833 None:intergenic 25.0%
!! TCTATTTTCATAAGCTATCT+TGG + chr1_1:25005056-25005075 Msa0015460:intron 25.0%
! GAAAGTTTATGGATATAAGA+TGG + chr1_1:25005078-25005097 Msa0015460:intron 25.0%
! GTACTTTAATGAAGAGTAAA+AGG + chr1_1:25005242-25005261 Msa0015460:intron 25.0%
!! AATTATGTTAGTCTCATTTG+AGG + chr1_1:25005371-25005390 Msa0015460:intron 25.0%
! ACATCTGTGATGATAATAAA+TGG + chr1_1:25005490-25005509 Msa0015460:CDS 25.0%
! TAAGCTATGAAAATAGCTTA+TGG + chr1_1:25005847-25005866 Msa0015460:intron 25.0%
!!! TCCATCTTTTTCATTCAATT+GGG + chr1_1:25006015-25006034 Msa0015460:intron 25.0%
!!! TGTAATGGATAAATATCTTG+GGG - chr1_1:25006322-25006341 None:intergenic 25.0%
!!! TTACTCGGAATTTTTTGTAA+TGG - chr1_1:25006337-25006356 None:intergenic 25.0%
! AGATTTTCACTTCAAAGTCA+AGG + chr1_1:25004361-25004380 Msa0015460:CDS 30.0%
CTTCATGTAACAATGGAATA+AGG - chr1_1:25004409-25004428 None:intergenic 30.0%
CTTATTCCATTGTTACATGA+AGG + chr1_1:25004407-25004426 Msa0015460:intron 30.0%
CTCATGTTTAGGAAATAGAA+AGG + chr1_1:25004572-25004591 Msa0015460:CDS 30.0%
AGAAAGGTAAGAAGAAATCA+TGG + chr1_1:25004588-25004607 Msa0015460:CDS 30.0%
CTTAGGAATCTTTGATACTT+TGG + chr1_1:25004758-25004777 Msa0015460:CDS 30.0%
! TTTTGACAAGAATCTCAAAG+AGG + chr1_1:25004818-25004837 Msa0015460:CDS 30.0%
AAGCTATCTTGGAAAGTTTA+TGG + chr1_1:25005067-25005086 Msa0015460:intron 30.0%
GTCTTTGCTTGTTTACTTAT+TGG + chr1_1:25005218-25005237 Msa0015460:intron 30.0%
GCAATAAATCACAATGCATT+TGG - chr1_1:25005270-25005289 None:intergenic 30.0%
! CCAGAAGTATATGAGAAAAT+AGG - chr1_1:25005320-25005339 None:intergenic 30.0%
! CCTATTTTCTCATATACTTC+TGG + chr1_1:25005317-25005336 Msa0015460:intron 30.0%
ATCAATCATCCAAGAAACAT+TGG + chr1_1:25005599-25005618 Msa0015460:CDS 30.0%
GCTTATGGACATATTATAAG+TGG + chr1_1:25005862-25005881 Msa0015460:intron 30.0%
! ATAAGCATTTGAGATGGTTT+GGG - chr1_1:25005902-25005921 None:intergenic 30.0%
!! ACTGATTTGTTTCCTACTTA+GGG - chr1_1:25005964-25005983 None:intergenic 30.0%
!! AACTGATTTGTTTCCTACTT+AGG - chr1_1:25005965-25005984 None:intergenic 30.0%
!! CTCCATCTTTTTCATTCAAT+TGG + chr1_1:25006014-25006033 Msa0015460:intron 30.0%
TCCCAATTGAATGAAAAAGA+TGG - chr1_1:25006019-25006038 None:intergenic 30.0%
TTGGCAGTCACATTTAATAA+TGG + chr1_1:25006137-25006156 Msa0015460:intron 30.0%
AAAGTAATAGCATGTGAATC+AGG + chr1_1:25006182-25006201 Msa0015460:intron 30.0%
! TAGTACTGAATTTGTGATCT+TGG + chr1_1:25006271-25006290 Msa0015460:CDS 30.0%
! ATCCTCGAAAATGTTTTACT+CGG - chr1_1:25006352-25006371 None:intergenic 30.0%
TTCATCACCTACAAATACAT+AGG - chr1_1:25006478-25006497 None:intergenic 30.0%
! AGATTTTCACTTCAAAGTCA+AGG + chr1_1:25004361-25004380 Msa0015460:CDS 30.0%
CTTCATGTAACAATGGAATA+AGG - chr1_1:25004409-25004428 None:intergenic 30.0%
CTTATTCCATTGTTACATGA+AGG + chr1_1:25004407-25004426 Msa0015460:intron 30.0%
CTCATGTTTAGGAAATAGAA+AGG + chr1_1:25004572-25004591 Msa0015460:CDS 30.0%
AGAAAGGTAAGAAGAAATCA+TGG + chr1_1:25004588-25004607 Msa0015460:CDS 30.0%
CTTAGGAATCTTTGATACTT+TGG + chr1_1:25004758-25004777 Msa0015460:CDS 30.0%
! TTTTGACAAGAATCTCAAAG+AGG + chr1_1:25004818-25004837 Msa0015460:CDS 30.0%
AAGCTATCTTGGAAAGTTTA+TGG + chr1_1:25005067-25005086 Msa0015460:intron 30.0%
GTCTTTGCTTGTTTACTTAT+TGG + chr1_1:25005218-25005237 Msa0015460:intron 30.0%
GCAATAAATCACAATGCATT+TGG - chr1_1:25005270-25005289 None:intergenic 30.0%
! CCAGAAGTATATGAGAAAAT+AGG - chr1_1:25005320-25005339 None:intergenic 30.0%
! CCTATTTTCTCATATACTTC+TGG + chr1_1:25005317-25005336 Msa0015460:intron 30.0%
ATCAATCATCCAAGAAACAT+TGG + chr1_1:25005599-25005618 Msa0015460:CDS 30.0%
GCTTATGGACATATTATAAG+TGG + chr1_1:25005862-25005881 Msa0015460:intron 30.0%
! ATAAGCATTTGAGATGGTTT+GGG - chr1_1:25005902-25005921 None:intergenic 30.0%
!! ACTGATTTGTTTCCTACTTA+GGG - chr1_1:25005964-25005983 None:intergenic 30.0%
!! AACTGATTTGTTTCCTACTT+AGG - chr1_1:25005965-25005984 None:intergenic 30.0%
!! CTCCATCTTTTTCATTCAAT+TGG + chr1_1:25006014-25006033 Msa0015460:intron 30.0%
TCCCAATTGAATGAAAAAGA+TGG - chr1_1:25006019-25006038 None:intergenic 30.0%
TTGGCAGTCACATTTAATAA+TGG + chr1_1:25006137-25006156 Msa0015460:intron 30.0%
AAAGTAATAGCATGTGAATC+AGG + chr1_1:25006182-25006201 Msa0015460:intron 30.0%
! TAGTACTGAATTTGTGATCT+TGG + chr1_1:25006271-25006290 Msa0015460:CDS 30.0%
! ATCCTCGAAAATGTTTTACT+CGG - chr1_1:25006352-25006371 None:intergenic 30.0%
TTCATCACCTACAAATACAT+AGG - chr1_1:25006478-25006497 None:intergenic 30.0%
AAAGAGCCTTCATGTAACAA+TGG - chr1_1:25004416-25004435 None:intergenic 35.0%
!! GAATTTCTATTGACTTGCAC+AGG + chr1_1:25004533-25004552 Msa0015460:intron 35.0%
GTAAGAAGAAATCATGGAGT+TGG + chr1_1:25004594-25004613 Msa0015460:CDS 35.0%
ACATGATGACCATGTGATAT+TGG - chr1_1:25004642-25004661 None:intergenic 35.0%
AATATCACATGGTCATCATG+TGG + chr1_1:25004641-25004660 Msa0015460:CDS 35.0%
GTGATACAAAGAGAGCAAAT+TGG + chr1_1:25004717-25004736 Msa0015460:CDS 35.0%
AAATTGGTGAGACAGAATTG+TGG + chr1_1:25004733-25004752 Msa0015460:CDS 35.0%
GGAATCTTTGATACTTTGGT+TGG + chr1_1:25004762-25004781 Msa0015460:CDS 35.0%
!! GCTCAAAAGCATCATTGATT+TGG - chr1_1:25004899-25004918 None:intergenic 35.0%
! ATCAATGATGCTTTTGAGCT+TGG + chr1_1:25004900-25004919 Msa0015460:intron 35.0%
! TCAATGATGCTTTTGAGCTT+GGG + chr1_1:25004901-25004920 Msa0015460:intron 35.0%
CTCGAATGGAAGAACAAAAT+AGG + chr1_1:25004929-25004948 Msa0015460:intron 35.0%
AGTCTGACAAGTACTTATGT+CGG + chr1_1:25005148-25005167 Msa0015460:intron 35.0%
!!! TGATCTTTGTTTTTGCACCT+AGG - chr1_1:25005429-25005448 None:intergenic 35.0%
TCAGATGAAACATGCATCAT+AGG + chr1_1:25005463-25005482 Msa0015460:CDS 35.0%
! AGAACTGTTTTGTGTAGAGA+TGG + chr1_1:25005547-25005566 Msa0015460:CDS 35.0%
TCTGTGATACCAATGTTTCT+TGG - chr1_1:25005611-25005630 None:intergenic 35.0%
!!! TGGTATCACAGACTTTTTTC+AGG + chr1_1:25005619-25005638 Msa0015460:CDS 35.0%
!! AATGGCTATGTCGATTCATT+TGG + chr1_1:25005680-25005699 Msa0015460:intron 35.0%
!! ATGGCTATGTCGATTCATTT+GGG + chr1_1:25005681-25005700 Msa0015460:intron 35.0%
AAGCAGTATTAGGTCATGTT+TGG + chr1_1:25005711-25005730 Msa0015460:intron 35.0%
! CATAAGCATTTGAGATGGTT+TGG - chr1_1:25005903-25005922 None:intergenic 35.0%
ACTGTCATAAGCATTTGAGA+TGG - chr1_1:25005908-25005927 None:intergenic 35.0%
! TTTCCTACTTAGGGTTTGTT+TGG - chr1_1:25005955-25005974 None:intergenic 35.0%
!! TTCTAAAGCTTCAGAACTTG+TGG + chr1_1:25006226-25006245 Msa0015460:CDS 35.0%
AACTTGTGGTTGGAAGTTAT+TGG + chr1_1:25006240-25006259 Msa0015460:CDS 35.0%
! TTCCGAGTAAAACATTTTCG+AGG + chr1_1:25006347-25006366 Msa0015460:intron 35.0%
TGAGTCTCCTATGTATTTGT+AGG + chr1_1:25006468-25006487 Msa0015460:intron 35.0%
TGATAAGATTCACTGCTTCT+TGG - chr1_1:25006504-25006523 None:intergenic 35.0%
AAGAAGCAGTGAATCTTATC+AGG + chr1_1:25006503-25006522 Msa0015460:CDS 35.0%
AAAGAGCCTTCATGTAACAA+TGG - chr1_1:25004416-25004435 None:intergenic 35.0%
!! GAATTTCTATTGACTTGCAC+AGG + chr1_1:25004533-25004552 Msa0015460:intron 35.0%
GTAAGAAGAAATCATGGAGT+TGG + chr1_1:25004594-25004613 Msa0015460:CDS 35.0%
ACATGATGACCATGTGATAT+TGG - chr1_1:25004642-25004661 None:intergenic 35.0%
AATATCACATGGTCATCATG+TGG + chr1_1:25004641-25004660 Msa0015460:CDS 35.0%
GTGATACAAAGAGAGCAAAT+TGG + chr1_1:25004717-25004736 Msa0015460:CDS 35.0%
AAATTGGTGAGACAGAATTG+TGG + chr1_1:25004733-25004752 Msa0015460:CDS 35.0%
GGAATCTTTGATACTTTGGT+TGG + chr1_1:25004762-25004781 Msa0015460:CDS 35.0%
!! GCTCAAAAGCATCATTGATT+TGG - chr1_1:25004899-25004918 None:intergenic 35.0%
! ATCAATGATGCTTTTGAGCT+TGG + chr1_1:25004900-25004919 Msa0015460:intron 35.0%
! TCAATGATGCTTTTGAGCTT+GGG + chr1_1:25004901-25004920 Msa0015460:intron 35.0%
CTCGAATGGAAGAACAAAAT+AGG + chr1_1:25004929-25004948 Msa0015460:intron 35.0%
AGTCTGACAAGTACTTATGT+CGG + chr1_1:25005148-25005167 Msa0015460:intron 35.0%
!!! TGATCTTTGTTTTTGCACCT+AGG - chr1_1:25005429-25005448 None:intergenic 35.0%
TCAGATGAAACATGCATCAT+AGG + chr1_1:25005463-25005482 Msa0015460:CDS 35.0%
! AGAACTGTTTTGTGTAGAGA+TGG + chr1_1:25005547-25005566 Msa0015460:CDS 35.0%
TCTGTGATACCAATGTTTCT+TGG - chr1_1:25005611-25005630 None:intergenic 35.0%
!!! TGGTATCACAGACTTTTTTC+AGG + chr1_1:25005619-25005638 Msa0015460:CDS 35.0%
!! AATGGCTATGTCGATTCATT+TGG + chr1_1:25005680-25005699 Msa0015460:intron 35.0%
!! ATGGCTATGTCGATTCATTT+GGG + chr1_1:25005681-25005700 Msa0015460:intron 35.0%
AAGCAGTATTAGGTCATGTT+TGG + chr1_1:25005711-25005730 Msa0015460:intron 35.0%
! CATAAGCATTTGAGATGGTT+TGG - chr1_1:25005903-25005922 None:intergenic 35.0%
ACTGTCATAAGCATTTGAGA+TGG - chr1_1:25005908-25005927 None:intergenic 35.0%
! TTTCCTACTTAGGGTTTGTT+TGG - chr1_1:25005955-25005974 None:intergenic 35.0%
!! TTCTAAAGCTTCAGAACTTG+TGG + chr1_1:25006226-25006245 Msa0015460:CDS 35.0%
AACTTGTGGTTGGAAGTTAT+TGG + chr1_1:25006240-25006259 Msa0015460:CDS 35.0%
! TTCCGAGTAAAACATTTTCG+AGG + chr1_1:25006347-25006366 Msa0015460:intron 35.0%
TGAGTCTCCTATGTATTTGT+AGG + chr1_1:25006468-25006487 Msa0015460:intron 35.0%
TGATAAGATTCACTGCTTCT+TGG - chr1_1:25006504-25006523 None:intergenic 35.0%
AAGAAGCAGTGAATCTTATC+AGG + chr1_1:25006503-25006522 Msa0015460:CDS 35.0%
GATATTGGCATCATCCATGA+TGG - chr1_1:25004627-25004646 None:intergenic 40.0%
TGGATGATGCCAATATCACA+TGG + chr1_1:25004630-25004649 Msa0015460:CDS 40.0%
GTGGAGCATGATTGGATTAA+TGG + chr1_1:25004663-25004682 Msa0015460:CDS 40.0%
GAGACAGAATTGTGGTACTT+AGG + chr1_1:25004741-25004760 Msa0015460:CDS 40.0%
TGCTCTCTTGAGTGTTTCTT+TGG - chr1_1:25005404-25005423 None:intergenic 40.0%
AGTTCTGTAATCTCCGATGT+TGG - chr1_1:25005533-25005552 None:intergenic 40.0%
!! ATGTCGATTCATTTGGGAGA+TGG + chr1_1:25005687-25005706 Msa0015460:intron 40.0%
! AGATGGTTTGGGAGAACTTA+TGG - chr1_1:25005891-25005910 None:intergenic 40.0%
AGTCCAAACAAACCCTAAGT+AGG + chr1_1:25005949-25005968 Msa0015460:intron 40.0%
TGTGAATCAGGTAATGCAAC+AGG + chr1_1:25006194-25006213 Msa0015460:intron 40.0%
AGGTAATGCAACAGGTACAA+AGG + chr1_1:25006202-25006221 Msa0015460:intron 40.0%
AAAGCTTCAGAACTTGTGGT+TGG + chr1_1:25006230-25006249 Msa0015460:CDS 40.0%
TTTGTGATCTTGGCAAGCAA+TGG + chr1_1:25006281-25006300 Msa0015460:CDS 40.0%
GAATCTTATCAGGCACATAG+AGG + chr1_1:25006513-25006532 Msa0015460:CDS 40.0%
GATATTGGCATCATCCATGA+TGG - chr1_1:25004627-25004646 None:intergenic 40.0%
TGGATGATGCCAATATCACA+TGG + chr1_1:25004630-25004649 Msa0015460:CDS 40.0%
GTGGAGCATGATTGGATTAA+TGG + chr1_1:25004663-25004682 Msa0015460:CDS 40.0%
GAGACAGAATTGTGGTACTT+AGG + chr1_1:25004741-25004760 Msa0015460:CDS 40.0%
TGCTCTCTTGAGTGTTTCTT+TGG - chr1_1:25005404-25005423 None:intergenic 40.0%
AGTTCTGTAATCTCCGATGT+TGG - chr1_1:25005533-25005552 None:intergenic 40.0%
!! ATGTCGATTCATTTGGGAGA+TGG + chr1_1:25005687-25005706 Msa0015460:intron 40.0%
! AGATGGTTTGGGAGAACTTA+TGG - chr1_1:25005891-25005910 None:intergenic 40.0%
AGTCCAAACAAACCCTAAGT+AGG + chr1_1:25005949-25005968 Msa0015460:intron 40.0%
TGTGAATCAGGTAATGCAAC+AGG + chr1_1:25006194-25006213 Msa0015460:intron 40.0%
AGGTAATGCAACAGGTACAA+AGG + chr1_1:25006202-25006221 Msa0015460:intron 40.0%
AAAGCTTCAGAACTTGTGGT+TGG + chr1_1:25006230-25006249 Msa0015460:CDS 40.0%
TTTGTGATCTTGGCAAGCAA+TGG + chr1_1:25006281-25006300 Msa0015460:CDS 40.0%
GAATCTTATCAGGCACATAG+AGG + chr1_1:25006513-25006532 Msa0015460:CDS 40.0%
!! ATTGACTTGCACAGGCACTT+CGG + chr1_1:25004541-25004560 Msa0015460:intron 45.0%
CGGGTGAAACTCTCATGTTT+AGG + chr1_1:25004561-25004580 Msa0015460:CDS 45.0%
ATCACATGGTCATCATGTGG+TGG + chr1_1:25004644-25004663 Msa0015460:CDS 45.0%
! ATCATGTGGTGGAGCATGAT+TGG + chr1_1:25004655-25004674 Msa0015460:CDS 45.0%
! ACACTCAAGAGAGCATACCT+AGG + chr1_1:25005409-25005428 Msa0015460:CDS 45.0%
AAACTCGTGCTAGCCAACAT+CGG + chr1_1:25005517-25005536 Msa0015460:CDS 45.0%
GGCGTAGCTTATCAGACAAT+TGG + chr1_1:25005568-25005587 Msa0015460:CDS 45.0%
GGGAGATGGAAAGCAGTATT+AGG + chr1_1:25005701-25005720 Msa0015460:intron 45.0%
GCTAATTCAGTGCTGCATTC+TGG - chr1_1:25005995-25006014 None:intergenic 45.0%
TCTTGGCAAGCAATGGCATA+TGG + chr1_1:25006288-25006307 Msa0015460:CDS 45.0%
! AAACACTCTGCTGCTTCTTG+TGG - chr1_1:25006541-25006560 None:intergenic 45.0%
! ACAAGAAGCAGCAGAGTGTT+TGG + chr1_1:25006540-25006559 Msa0015460:CDS 45.0%
! GTGTTTGGCTAAGGAAGCAT+TGG + chr1_1:25006555-25006574 Msa0015460:CDS 45.0%
!! TGGCTAAGGAAGCATTGGTT+AGG + chr1_1:25006560-25006579 Msa0015460:CDS 45.0%
!! ATTGACTTGCACAGGCACTT+CGG + chr1_1:25004541-25004560 Msa0015460:intron 45.0%
CGGGTGAAACTCTCATGTTT+AGG + chr1_1:25004561-25004580 Msa0015460:CDS 45.0%
ATCACATGGTCATCATGTGG+TGG + chr1_1:25004644-25004663 Msa0015460:CDS 45.0%
! ATCATGTGGTGGAGCATGAT+TGG + chr1_1:25004655-25004674 Msa0015460:CDS 45.0%
! ACACTCAAGAGAGCATACCT+AGG + chr1_1:25005409-25005428 Msa0015460:CDS 45.0%
AAACTCGTGCTAGCCAACAT+CGG + chr1_1:25005517-25005536 Msa0015460:CDS 45.0%
GGCGTAGCTTATCAGACAAT+TGG + chr1_1:25005568-25005587 Msa0015460:CDS 45.0%
GGGAGATGGAAAGCAGTATT+AGG + chr1_1:25005701-25005720 Msa0015460:intron 45.0%
GCTAATTCAGTGCTGCATTC+TGG - chr1_1:25005995-25006014 None:intergenic 45.0%
TCTTGGCAAGCAATGGCATA+TGG + chr1_1:25006288-25006307 Msa0015460:CDS 45.0%
! AAACACTCTGCTGCTTCTTG+TGG - chr1_1:25006541-25006560 None:intergenic 45.0%
! ACAAGAAGCAGCAGAGTGTT+TGG + chr1_1:25006540-25006559 Msa0015460:CDS 45.0%
! GTGTTTGGCTAAGGAAGCAT+TGG + chr1_1:25006555-25006574 Msa0015460:CDS 45.0%
!! TGGCTAAGGAAGCATTGGTT+AGG + chr1_1:25006560-25006579 Msa0015460:CDS 45.0%
!!! GTTTTTTTTAAAAAATTAAT+AGG + chr1_1:25006424-25006443 Msa0015460:intron 5.0%
!!! GTTTTTTTTAAAAAATTAAT+AGG + chr1_1:25006424-25006443 Msa0015460:intron 5.0%
!! TTGACTTGCACAGGCACTTC+GGG + chr1_1:25004542-25004561 Msa0015460:intron 50.0%
GAGTTGGAAGCAAGCCATCA+TGG + chr1_1:25004610-25004629 Msa0015460:CDS 50.0%
! AGCAGCAGAGTGTTTGGCTA+AGG + chr1_1:25006546-25006565 Msa0015460:CDS 50.0%
!! TTGACTTGCACAGGCACTTC+GGG + chr1_1:25004542-25004561 Msa0015460:intron 50.0%
GAGTTGGAAGCAAGCCATCA+TGG + chr1_1:25004610-25004629 Msa0015460:CDS 50.0%
! AGCAGCAGAGTGTTTGGCTA+AGG + chr1_1:25006546-25006565 Msa0015460:CDS 50.0%
GAGCTTGGGAGACTCTCGAA+TGG + chr1_1:25004915-25004934 Msa0015460:intron 55.0%
GGCAAGCAATGGCATATGGC+AGG + chr1_1:25006292-25006311 Msa0015460:CDS 55.0%
GAGCTTGGGAGACTCTCGAA+TGG + chr1_1:25004915-25004934 Msa0015460:intron 55.0%
GGCAAGCAATGGCATATGGC+AGG + chr1_1:25006292-25006311 Msa0015460:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 25004350 25006627 25004350 ID=Msa0015460;Name=Msa0015460
chr1_1 mRNA 25004350 25006627 25004350 ID=Msa0015460-mRNA-1;Parent=Msa0015460;Name=Msa0015460-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|5|0|274
chr1_1 exon 25004350 25004382 25004350 ID=Msa0015460-mRNA-1:exon:8603;Parent=Msa0015460-mRNA-1
chr1_1 exon 25004555 25004839 25004555 ID=Msa0015460-mRNA-1:exon:8604;Parent=Msa0015460-mRNA-1
chr1_1 exon 25005382 25005640 25005382 ID=Msa0015460-mRNA-1:exon:8605;Parent=Msa0015460-mRNA-1
chr1_1 exon 25006204 25006313 25006204 ID=Msa0015460-mRNA-1:exon:8606;Parent=Msa0015460-mRNA-1
chr1_1 exon 25006490 25006627 25006490 ID=Msa0015460-mRNA-1:exon:8607;Parent=Msa0015460-mRNA-1
chr1_1 CDS 25004350 25004382 25004350 ID=Msa0015460-mRNA-1:cds;Parent=Msa0015460-mRNA-1
chr1_1 CDS 25004555 25004839 25004555 ID=Msa0015460-mRNA-1:cds;Parent=Msa0015460-mRNA-1
chr1_1 CDS 25005382 25005640 25005382 ID=Msa0015460-mRNA-1:cds;Parent=Msa0015460-mRNA-1
chr1_1 CDS 25006204 25006313 25006204 ID=Msa0015460-mRNA-1:cds;Parent=Msa0015460-mRNA-1
chr1_1 CDS 25006490 25006627 25006490 ID=Msa0015460-mRNA-1:cds;Parent=Msa0015460-mRNA-1
Gene Sequence

>Msa0015460

ATGGGAATGAGAGATTTTCACTTCAAAGTCAAGGCACTTCGGGTGAAACTCTCATGTTTAGGAAATAGAAAGGTAAGAAGAAATCATGGAGTTGGAAGCAAGCCATCATGGATGATGCCAATATCACATGGTCATCATGTGGTGGAGCATGATTGGATTAATGGTGATTCTGATGACTCTGAGTTTGATTCAGTTGTGATACAAAGAGAGCAAATTGGTGAGACAGAATTGTGGTACTTAGGAATCTTTGATACTTTGGTTGGAGATTGTGTTACCAAATATTTGCAAGCCAATTATTTTGACAAGAATCTCAAAGAGTCTCATTTGAGGAGAAAAGCCAAAGAAACACTCAAGAGAGCATACCTAGGTGCAAAAACAAAGATCAGAGAGACACAGAAATCAGATGAAACATGCATCATAGGTTCAACATCTGTGATGATAATAAATGGAGAAAAACTCGTGCTAGCCAACATCGGAGATTACAGAACTGTTTTGTGTAGAGATGGCGTAGCTTATCAGACAATTGGAAAGCACAATCAATCATCCAAGAAACATTGGTATCACAGACTTTTTTCAGGTAATGCAACAGGTACAAAGGCTTCTAAAGCTTCAGAACTTGTGGTTGGAAGTTATTGGATTGACTCTAGTACTGAATTTGTGATCTTGGCAAGCAATGGCATATGGCAGGTGATGAAGAACCAAGAAGCAGTGAATCTTATCAGGCACATAGAGGATCCACAAGAAGCAGCAGAGTGTTTGGCTAAGGAAGCATTGGTTAGGATGAGCAGAAGCCATATTTCATGTTTAATCATTCGATTTGATTGA

Protein sequence

>Msa0015460

MGMRDFHFKVKALRVKLSCLGNRKVRRNHGVGSKPSWMMPISHGHHVVEHDWINGDSDDSEFDSVVIQREQIGETELWYLGIFDTLVGDCVTKYLQANYFDKNLKESHLRRKAKETLKRAYLGAKTKIRETQKSDETCIIGSTSVMIINGEKLVLANIGDYRTVLCRDGVAYQTIGKHNQSSKKHWYHRLFSGNATGTKASKASELVVGSYWIDSSTEFVILASNGIWQVMKNQEAVNLIRHIEDPQEAAECLAKEALVRMSRSHISCLIIRFD*