Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350890 | XP_003598897.1 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.20e-77 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350890 | sp|Q39080|DAD1_ARATH | 91.304 | 115 | 10 | 0 | 1 | 115 | 1 | 115 | 6.80e-74 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350890 | G7J1N4 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 5.75e-78 | 234 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0350890 | Msa0492900 | 0.993870 | 7.808015e-203 | -8.615850e-47 |
| Msa0350890 | Msa1072960 | 0.800168 | 1.635558e-48 | -8.615850e-47 |
| Msa0350890 | Msa1357350 | 0.815204 | 1.042273e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350890 | MtrunA17_Chr3g0085841 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.11e-81 | 234 |
| Msa0350890 | MtrunA17_Chr5g0410671 | 92.793 | 111 | 8 | 0 | 5 | 115 | 14 | 124 | 1.55e-73 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350890 | AT1G32210.1 | 91.304 | 115 | 10 | 0 | 1 | 115 | 1 | 115 | 6.91e-75 | 218 |
| Msa0350890 | AT2G35520.3 | 87.826 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 8.57e-72 | 209 |
| Msa0350890 | AT2G35520.1 | 87.826 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 8.57e-72 | 209 |
| Msa0350890 | AT2G35520.2 | 87.069 | 116 | 14 | 1 | 1 | 115 | 1 | 116 | 5.08e-70 | 205 |
| Msa0350890 | AT1G32210.2 | 92.045 | 88 | 7 | 0 | 1 | 88 | 1 | 88 | 4.68e-54 | 164 |
Find 43 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAACTTCCTTGGTTAAAT+TGG | 0.104421 | 3_1:-16313394 | Msa0350890:exon |
| CCATTTAACTCCTTCCTTTC+AGG | 0.114983 | 3_1:-16314054 | Msa0350890:CDS |
| CCTTGTTCTCTTTATTCACT+TGG | 0.305994 | 3_1:+16313791 | None:intergenic |
| AAGATCTTCTCCGCACTCTT+TGG | 0.356756 | 3_1:-16315602 | Msa0350890:CDS |
| CCTGAAAGGAAGGAGTTAAA+TGG | 0.359284 | 3_1:+16314054 | None:intergenic |
| TGAACTTCCTTGGTTAAATT+GGG | 0.383017 | 3_1:-16313393 | Msa0350890:exon |
| CCAGGTAGTTTACATGGCTT+TGG | 0.389862 | 3_1:-16314088 | Msa0350890:intron |
| TTGGTCATCATGAACTTCCT+TGG | 0.439540 | 3_1:-16313403 | Msa0350890:CDS |
| GTGCAATGTGGTGCTCCATT+TGG | 0.442688 | 3_1:-16313422 | Msa0350890:CDS |
| TCAGGCGTGCTTTCTTGCGT+AGG | 0.450212 | 3_1:-16314036 | Msa0350890:CDS |
| TCTCTTTATTCACTTGGATC+CGG | 0.452230 | 3_1:+16313797 | None:intergenic |
| TAAAGAGAACAAGGAATTCA+AGG | 0.465642 | 3_1:-16313782 | Msa0350890:intron |
| AGGAACAACCTTGAGATTTG+TGG | 0.468795 | 3_1:+16315560 | None:intergenic |
| GGAACAACCTTGAGATTTGT+GGG | 0.478791 | 3_1:+16315561 | None:intergenic |
| AAAATCTGCAAAAGCACGCT+CGG | 0.479534 | 3_1:+16313450 | None:intergenic |
| CCAAACCAAATTCCCAGAAA+AGG | 0.482966 | 3_1:+16313242 | None:intergenic |
| CGCAAGAAAGCACGCCTGAA+AGG | 0.485077 | 3_1:+16314040 | None:intergenic |
| CAGGCGTGCTTTCTTGCGTA+GGG | 0.486252 | 3_1:-16314035 | Msa0350890:CDS |
| TAATGACCAGGTAGTTTACA+TGG | 0.487275 | 3_1:-16314094 | Msa0350890:intron |
| AAAGGAAAGGGCAAATATCC+AGG | 0.495226 | 3_1:+16313260 | None:intergenic |
| GGTAGTTTACATGGCTTTGG+TGG | 0.498163 | 3_1:-16314085 | Msa0350890:CDS |
| GGAAGTTCATGATGACCAAA+TGG | 0.507403 | 3_1:+16313407 | None:intergenic |
| TGTCTTCACTGCCCTCATCC+AGG | 0.517420 | 3_1:-16315445 | Msa0350890:intron |
| GGAAAGGAAGTACCTGGATG+AGG | 0.534843 | 3_1:+16315433 | None:intergenic |
| AGAAAGCACGCCTGAAAGGA+AGG | 0.554097 | 3_1:+16314044 | None:intergenic |
| AAATCTGCAAAAGCACGCTC+GGG | 0.559759 | 3_1:+16313451 | None:intergenic |
| CAAATTCCCAGAAAAGGAAA+GGG | 0.559882 | 3_1:+16313248 | None:intergenic |
| GTAGGGACTGCAGTTCTCGC+TGG | 0.561141 | 3_1:-16314018 | Msa0350890:intron |
| CCAAGTGAATAAAGAGAACA+AGG | 0.563011 | 3_1:-16313791 | Msa0350890:CDS |
| CCAAATTCCCAGAAAAGGAA+AGG | 0.564117 | 3_1:+16313247 | None:intergenic |
| TGTAGAGACAACTACTTTAG+CGG | 0.571855 | 3_1:-16316747 | None:intergenic |
| ATAGAGCAGAAACCTGGGAT+AGG | 0.584980 | 3_1:-16313301 | Msa0350890:three_prime_UTR |
| GATGGTGAAGTCTACTGCTA+AGG | 0.589667 | 3_1:-16315631 | Msa0350890:CDS |
| GAAAGGAAGTACCTGGATGA+GGG | 0.591104 | 3_1:+16315434 | None:intergenic |
| GTAGTTTACATGGCTTTGGT+GGG | 0.595250 | 3_1:-16314084 | Msa0350890:CDS |
| GAAGGAAAAGTTGAAAACGA+TGG | 0.609152 | 3_1:-16315649 | Msa0350890:exon |
| AACAACCTTGAGATTTGTGG+GGG | 0.618905 | 3_1:+16315563 | None:intergenic |
| GAACAACCTTGAGATTTGTG+GGG | 0.633022 | 3_1:+16315562 | None:intergenic |
| TGTCTGAATTTCGAATCCAA+AGG | 0.647407 | 3_1:-16316703 | Msa0350890:intron |
| TGACTATCTAAATCTGAGCA+AGG | 0.656118 | 3_1:-16313157 | Msa0350890:three_prime_UTR |
| TCAGACAACTACGACAGACG+TGG | 0.669671 | 3_1:+16316719 | None:intergenic |
| ACATGAACCCAATTTAACCA+AGG | 0.672277 | 3_1:+16313386 | None:intergenic |
| AATAAGCAGACCAAAGAGTG+CGG | 0.691016 | 3_1:+16315592 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTAAATTAGAATAAAAA+AGG | + | chr3_1:16315628-16315647 | None:intergenic | 10.0% |
| !! | ACAGAAAAATAGAATAAAAT+TGG | + | chr3_1:16313323-16313342 | None:intergenic | 15.0% |
| !!! | TTTTTTCGAAATAGATATTA+CGG | - | chr3_1:16313714-16313733 | Msa0350890:intron | 15.0% |
| !!! | GTTTTTAAAAAATTAGACTT+GGG | + | chr3_1:16315654-16315673 | None:intergenic | 15.0% |
| !!! | TGTTTTTAAAAAATTAGACT+TGG | + | chr3_1:16315655-16315674 | None:intergenic | 15.0% |
| !!! | TACAAGTGAAATTAATATTT+TGG | - | chr3_1:16315680-16315699 | Msa0350890:intron | 15.0% |
| !! | AAGAAAACCTAAAAATATTA+CGG | + | chr3_1:16316221-16316240 | None:intergenic | 15.0% |
| !! | AAAAAAATAATAATAGTACC+TGG | - | chr3_1:16316612-16316631 | Msa0350890:intron | 15.0% |
| !! | TCTCTCATATATTCTTATAT+TGG | - | chr3_1:16314015-16314034 | Msa0350890:intron | 20.0% |
| !!! | AAATCAATCTTTGATTTTTG+TGG | - | chr3_1:16314548-16314567 | Msa0350890:intron | 20.0% |
| !! | AGTAAGATTAAAAAATTGGA+GGG | + | chr3_1:16315588-16315607 | None:intergenic | 20.0% |
| !! | GTAGAGTAAGATTAAAAAAT+TGG | + | chr3_1:16315592-16315611 | None:intergenic | 20.0% |
| !!! | TGAAATTAATATTTTGGTGA+AGG | - | chr3_1:16315686-16315705 | Msa0350890:intron | 20.0% |
| !!! | GAAATTAATATTTTGGTGAA+GGG | - | chr3_1:16315687-16315706 | Msa0350890:intron | 20.0% |
| !! | AAAAAAAAAAAAGAGCAAGT+AGG | + | chr3_1:16315724-16315743 | None:intergenic | 20.0% |
| !! | AGAAAACCTAAAAATATTAC+GGG | + | chr3_1:16316220-16316239 | None:intergenic | 20.0% |
| !!! | TTGGTATTTCATTTTAATAC+AGG | - | chr3_1:16316408-16316427 | Msa0350890:intron | 20.0% |
| !!! | TCTATTTTTCTTCTTCTTTT+GGG | + | chr3_1:16316574-16316593 | None:intergenic | 20.0% |
| ! | GTAAATTGAAACAATTGAGT+TGG | + | chr3_1:16313234-16313253 | None:intergenic | 25.0% |
| ! | CTATAATGCAAATGAATGAA+TGG | + | chr3_1:16313256-16313275 | None:intergenic | 25.0% |
| ! | CATAAATCATTGAACCTATA+AGG | + | chr3_1:16313439-16313458 | None:intergenic | 25.0% |
| !!! | GGTCTAAAAAAGTTTGTTAA+GGG | + | chr3_1:16313672-16313691 | None:intergenic | 25.0% |
| !!! | AGGTCTAAAAAAGTTTGTTA+AGG | + | chr3_1:16313673-16313692 | None:intergenic | 25.0% |
| ! | CTTTGTGGGAAAATATTTAT+AGG | - | chr3_1:16313870-16313889 | Msa0350890:intron | 25.0% |
| !!! | TATTTTTGTAGAAATGCAGA+GGG | + | chr3_1:16314362-16314381 | None:intergenic | 25.0% |
| !!! | ATATTTTTGTAGAAATGCAG+AGG | + | chr3_1:16314363-16314382 | None:intergenic | 25.0% |
| !! | AATCTGATAATGATATTCGT+AGG | + | chr3_1:16314576-16314595 | None:intergenic | 25.0% |
| ! | TATATGCAATAACATGTGTT+TGG | + | chr3_1:16314741-16314760 | None:intergenic | 25.0% |
| ! | CTTTATGTGTGTTATGTAAT+TGG | + | chr3_1:16314845-16314864 | None:intergenic | 25.0% |
| !! | TCTAGATAACAGTTTCTTTT+GGG | + | chr3_1:16314868-16314887 | None:intergenic | 25.0% |
| !! | ATCTAGATAACAGTTTCTTT+TGG | + | chr3_1:16314869-16314888 | None:intergenic | 25.0% |
| ! | AACTCCTAATTCCTAATTAA+TGG | + | chr3_1:16315355-16315374 | None:intergenic | 25.0% |
| ! | ATGAAGAGTTCTATGATATT+TGG | + | chr3_1:16315484-16315503 | None:intergenic | 25.0% |
| ! | GAGTAAGATTAAAAAATTGG+AGG | + | chr3_1:16315589-16315608 | None:intergenic | 25.0% |
| ! | TAAAAAAGGATAGTATCATC+TGG | + | chr3_1:16315614-16315633 | None:intergenic | 25.0% |
| !! | TTTTCATTTTCTTAATGACC+AGG | - | chr3_1:16315784-16315803 | Msa0350890:intron | 25.0% |
| !! | TTTCAACCCGTAATATTTTT+AGG | - | chr3_1:16316211-16316230 | Msa0350890:intron | 25.0% |
| ! | TTGTATTAATGTCATTAGTC+TGG | - | chr3_1:16316252-16316271 | Msa0350890:intron | 25.0% |
| ! | GAAATGAAGAAATAATGTGT+TGG | - | chr3_1:16316350-16316369 | Msa0350890:intron | 25.0% |
| !!! | CTCTATTTTTCTTCTTCTTT+TGG | + | chr3_1:16316575-16316594 | None:intergenic | 25.0% |
| !!! | TATTATTTTTTTCCTATCCC+AGG | + | chr3_1:16316604-16316623 | None:intergenic | 25.0% |
| AAACAAAATGCAGGTAGAAA+GGG | + | chr3_1:16313535-16313554 | None:intergenic | 30.0% | |
| AAAACAAAATGCAGGTAGAA+AGG | + | chr3_1:16313536-16313555 | None:intergenic | 30.0% | |
| CCTACAAAAAAACAAAATGC+AGG | + | chr3_1:16313544-16313563 | None:intergenic | 30.0% | |
| !!! | CCTGCATTTTGTTTTTTTGT+AGG | - | chr3_1:16313541-16313560 | Msa0350890:intron | 30.0% |
| TATTGAAACTAACTCTTCAG+AGG | - | chr3_1:16313641-16313660 | Msa0350890:intron | 30.0% | |
| ATCCAAGTCTCACATAAATA+AGG | + | chr3_1:16313693-16313712 | None:intergenic | 30.0% | |
| TTACGGAGAATAAAAGAATC+TGG | - | chr3_1:16313731-16313750 | Msa0350890:intron | 30.0% | |
| TACGGAGAATAAAAGAATCT+GGG | - | chr3_1:16313732-16313751 | Msa0350890:intron | 30.0% | |
| TTGTAAACTGAGATTCTTTG+TGG | - | chr3_1:16313855-16313874 | Msa0350890:intron | 30.0% | |
| TGTAAACTGAGATTCTTTGT+GGG | - | chr3_1:16313856-16313875 | Msa0350890:intron | 30.0% | |
| ! | TGAATTTTTGTGACTTGAAG+TGG | - | chr3_1:16314143-16314162 | Msa0350890:intron | 30.0% |
| GAAAGATGTTCACACAAATA+TGG | + | chr3_1:16314200-16314219 | None:intergenic | 30.0% | |
| !!! | TTTCTCTTTTTTCACTGTGT+AGG | - | chr3_1:16314216-16314235 | Msa0350890:intron | 30.0% |
| TTAGAAATTGATGCAAGGAA+AGG | + | chr3_1:16314476-16314495 | None:intergenic | 30.0% | |
| ! | GATCTTTAGAAATTGATGCA+AGG | + | chr3_1:16314481-16314500 | None:intergenic | 30.0% |
| !! | GATTGATTTGCTAATGTTAC+AGG | + | chr3_1:16314537-16314556 | None:intergenic | 30.0% |
| CCAAAATAAAACAGCTGATT+TGG | + | chr3_1:16314602-16314621 | None:intergenic | 30.0% | |
| !!! | CCAAATCAGCTGTTTTATTT+TGG | - | chr3_1:16314599-16314618 | Msa0350890:intron | 30.0% |
| ! | TTTGGTTACTGTTTGATGAT+TGG | - | chr3_1:16314617-16314636 | Msa0350890:intron | 30.0% |
| AATTCACCAAATCATCTTGA+AGG | - | chr3_1:16314957-16314976 | Msa0350890:intron | 30.0% | |
| ATCTTGAAGGAAGTAGATTA+GGG | - | chr3_1:16314970-16314989 | Msa0350890:intron | 30.0% | |
| !!! | AGTTAACTTTGTTTTGCTGT+CGG | + | chr3_1:16315072-16315091 | None:intergenic | 30.0% |
| CAAAACAAAGTTAACTTCCA+CGG | - | chr3_1:16315076-16315095 | Msa0350890:intron | 30.0% | |
| AAAACAAAGTTAACTTCCAC+GGG | - | chr3_1:16315077-16315096 | Msa0350890:intron | 30.0% | |
| ATATACCTGAATACGCTATA+GGG | - | chr3_1:16315183-16315202 | Msa0350890:intron | 30.0% | |
| !! | ATCATTGATTTGAGATCAGA+CGG | - | chr3_1:16315389-16315408 | Msa0350890:intron | 30.0% |
| !!! | GTTTTTTGGATTAGGATTCT+TGG | + | chr3_1:16315447-16315466 | None:intergenic | 30.0% |
| AAGTAAGATCACAATTGTTG+TGG | + | chr3_1:16315528-16315547 | None:intergenic | 30.0% | |
| !!! | ATATTTTGGTGAAGGGTTAA+AGG | - | chr3_1:16315694-16315713 | Msa0350890:intron | 30.0% |
| ACAAACTGGTCAAAAAATGA+AGG | + | chr3_1:16316071-16316090 | None:intergenic | 30.0% | |
| TAAAGAGAACAAGGAATTCA+AGG | - | chr3_1:16316108-16316127 | Msa0350890:intron | 30.0% | |
| AAAGTTGCATGGATAGTTAT+AGG | + | chr3_1:16316194-16316213 | None:intergenic | 30.0% | |
| TTCACTTGATACATTCTTAC+AGG | - | chr3_1:16316382-16316401 | Msa0350890:intron | 30.0% | |
| GATACATTCTTACAGGTAAT+TGG | - | chr3_1:16316389-16316408 | Msa0350890:intron | 30.0% | |
| ATGAACTTCCTTGGTTAAAT+TGG | - | chr3_1:16316496-16316515 | Msa0350890:intron | 30.0% | |
| TGAACTTCCTTGGTTAAATT+GGG | - | chr3_1:16316497-16316516 | Msa0350890:intron | 30.0% | |
| TGTCTGAATTTCGAATCCAA+AGG | - | chr3_1:16313187-16313206 | Msa0350890:three_prime_UTR | 35.0% | |
| TGCATCTTCATTTGCCTTAT+AGG | - | chr3_1:16313422-16313441 | Msa0350890:CDS | 35.0% | |
| AACAAAATGCAGGTAGAAAG+GGG | + | chr3_1:16313534-16313553 | None:intergenic | 35.0% | |
| ! | GCGATATAAACTTGATGACA+TGG | + | chr3_1:16313579-16313598 | None:intergenic | 35.0% |
| ! | GACCTTATTTATGTGAGACT+TGG | - | chr3_1:16313688-16313707 | Msa0350890:intron | 35.0% |
| !! | TGTTGACTGCACATATCTTT+TGG | - | chr3_1:16313953-16313972 | Msa0350890:intron | 35.0% |
| ! | TTTTTCACTGTGTAGGTAGA+AGG | - | chr3_1:16314223-16314242 | Msa0350890:intron | 35.0% |
| GAAGGAAAAGTTGAAAACGA+TGG | - | chr3_1:16314241-16314260 | Msa0350890:intron | 35.0% | |
| !! | TATTTTTGCTAACCCTGCTT+TGG | - | chr3_1:16314384-16314403 | Msa0350890:intron | 35.0% |
| CTAAATGAAAAGCCAAAGCA+GGG | + | chr3_1:16314399-16314418 | None:intergenic | 35.0% | |
| TCTAAATGAAAAGCCAAAGC+AGG | + | chr3_1:16314400-16314419 | None:intergenic | 35.0% | |
| ! | TTACTGTTTGATGATTGGAG+TGG | - | chr3_1:16314622-16314641 | Msa0350890:intron | 35.0% |
| TGCTTAGACAATGTTAGCAT+TGG | - | chr3_1:16314675-16314694 | Msa0350890:intron | 35.0% | |
| GCTTAGACAATGTTAGCATT+GGG | - | chr3_1:16314676-16314695 | Msa0350890:intron | 35.0% | |
| CTTAGACAATGTTAGCATTG+GGG | - | chr3_1:16314677-16314696 | Msa0350890:intron | 35.0% | |
| CAGATTTGTGAAGTAACTTC+TGG | + | chr3_1:16314791-16314810 | None:intergenic | 35.0% | |
| TTACTTCACAAATCTGCAGA+AGG | - | chr3_1:16314795-16314814 | Msa0350890:intron | 35.0% | |
| TTTGACCAATGATTCGAGAT+TGG | - | chr3_1:16314920-16314939 | Msa0350890:intron | 35.0% | |
| CTACTTCCTTCAAGATGATT+TGG | + | chr3_1:16314966-16314985 | None:intergenic | 35.0% | |
| CATCTTGAAGGAAGTAGATT+AGG | - | chr3_1:16314969-16314988 | Msa0350890:intron | 35.0% | |
| GTGAATCGAATAGGTTACAT+AGG | + | chr3_1:16315040-16315059 | None:intergenic | 35.0% | |
| TGCAGGAAATGCAAATGTAT+AGG | - | chr3_1:16315130-16315149 | Msa0350890:intron | 35.0% | |
| GATATACCTGAATACGCTAT+AGG | - | chr3_1:16315182-16315201 | Msa0350890:intron | 35.0% | |
| !! | TCTGGATGGATTAAGATAAC+AGG | + | chr3_1:16315280-16315299 | None:intergenic | 35.0% |
| TGTTATCTTAATCCATCCAG+AGG | - | chr3_1:16315279-16315298 | Msa0350890:intron | 35.0% | |
| GTTATCTTAATCCATCCAGA+GGG | - | chr3_1:16315280-16315299 | Msa0350890:intron | 35.0% | |
| AATTAATGGCTGGTAGGTAA+CGG | + | chr3_1:16315341-16315360 | None:intergenic | 35.0% | |
| TTACCTACCAGCCATTAATT+AGG | - | chr3_1:16315341-16315360 | Msa0350890:intron | 35.0% | |
| ATTCCTAATTAATGGCTGGT+AGG | + | chr3_1:16315347-16315366 | None:intergenic | 35.0% | |
| CCTAATTCCTAATTAATGGC+TGG | + | chr3_1:16315351-16315370 | None:intergenic | 35.0% | |
| CCAGCCATTAATTAGGAATT+AGG | - | chr3_1:16315348-16315367 | Msa0350890:intron | 35.0% | |
| TGTGACACGGTAAATAATCT+GGG | + | chr3_1:16315415-16315434 | None:intergenic | 35.0% | |
| TTGGCATTAAATGTGTGACA+CGG | + | chr3_1:16315428-16315447 | None:intergenic | 35.0% | |
| ATGTCTGGAAGGATATTATC+TGG | + | chr3_1:16315553-16315572 | None:intergenic | 35.0% | |
| TATCCTTCCAGACATTATTG+AGG | - | chr3_1:16315558-16315577 | Msa0350890:intron | 35.0% | |
| ATTCCTCAATAATGTCTGGA+AGG | + | chr3_1:16315564-16315583 | None:intergenic | 35.0% | |
| TAATGACCAGGTAGTTTACA+TGG | - | chr3_1:16315796-16315815 | Msa0350890:intron | 35.0% | |
| !! | ACAATAGTTCTAATCTGCCT+AGG | - | chr3_1:16315977-16315996 | Msa0350890:intron | 35.0% |
| GAACTATTGTATCTGAACCT+AGG | + | chr3_1:16315997-16316016 | None:intergenic | 35.0% | |
| !! | ACAATAGTTCTAATCTGCCT+AGG | - | chr3_1:16315977-16315996 | Msa0350890:intron | 35.0% |
| AAACTTATGCATACGAACCT+AGG | + | chr3_1:16316027-16316046 | None:intergenic | 35.0% | |
| ACTGGTCAAAAAATGAAGGA+TGG | + | chr3_1:16316067-16316086 | None:intergenic | 35.0% | |
| !!! | TTTTTTGACCAGTTTGTCTC+CGG | - | chr3_1:16316074-16316093 | Msa0350890:intron | 35.0% |
| TCTCTTTATTCACTTGGATC+CGG | + | chr3_1:16316096-16316115 | None:intergenic | 35.0% | |
| CCTTGTTCTCTTTATTCACT+TGG | + | chr3_1:16316102-16316121 | None:intergenic | 35.0% | |
| CCAAGTGAATAAAGAGAACA+AGG | - | chr3_1:16316099-16316118 | Msa0350890:intron | 35.0% | |
| CTTGACTGAACAAAGTAGAA+AGG | - | chr3_1:16316328-16316347 | Msa0350890:intron | 35.0% | |
| ! | AGATTTTGTTCTGTGCAATG+TGG | - | chr3_1:16316456-16316475 | Msa0350890:intron | 35.0% |
| ACATGAACCCAATTTAACCA+AGG | + | chr3_1:16316507-16316526 | None:intergenic | 35.0% | |
| ACTCTGTTCTAATGGAATCA+AGG | + | chr3_1:16316536-16316555 | None:intergenic | 35.0% | |
| GTTCTGTAACTCTGTTCTAA+TGG | + | chr3_1:16316544-16316563 | None:intergenic | 35.0% | |
| AGAAAAATAGAGCAGAAACC+TGG | - | chr3_1:16316583-16316602 | Msa0350890:intron | 35.0% | |
| GAAAAATAGAGCAGAAACCT+GGG | - | chr3_1:16316584-16316603 | Msa0350890:intron | 35.0% | |
| ! | ATATTTGCCCTTTCCTTTTC+TGG | - | chr3_1:16316635-16316654 | Msa0350890:intron | 35.0% |
| ! | TATTTGCCCTTTCCTTTTCT+GGG | - | chr3_1:16316636-16316655 | Msa0350890:intron | 35.0% |
| CAAATTCCCAGAAAAGGAAA+GGG | + | chr3_1:16316645-16316664 | None:intergenic | 35.0% | |
| TGACTATCTAAATCTGAGCA+AGG | - | chr3_1:16316733-16316752 | Msa0350890:five_prime_UTR | 35.0% | |
| !! | ATTGAGTTGGATCTGAGTGA+AGG | + | chr3_1:16313221-16313240 | None:intergenic | 40.0% |
| AGAGAAACACACGTTGAGTT+AGG | + | chr3_1:16313390-16313409 | None:intergenic | 40.0% | |
| ACAAAATGCAGGTAGAAAGG+GGG | + | chr3_1:16313533-16313552 | None:intergenic | 40.0% | |
| AATAAGCAGACCAAAGAGTG+CGG | + | chr3_1:16314301-16314320 | None:intergenic | 40.0% | |
| AACAACCTTGAGATTTGTGG+GGG | + | chr3_1:16314330-16314349 | None:intergenic | 40.0% | |
| GAACAACCTTGAGATTTGTG+GGG | + | chr3_1:16314331-16314350 | None:intergenic | 40.0% | |
| GGAACAACCTTGAGATTTGT+GGG | + | chr3_1:16314332-16314351 | None:intergenic | 40.0% | |
| AGGAACAACCTTGAGATTTG+TGG | + | chr3_1:16314333-16314352 | None:intergenic | 40.0% | |
| TGACATTGTGCTGAATTTCC+CGG | - | chr3_1:16314764-16314783 | Msa0350890:intron | 40.0% | |
| TTGTGAAGTAACTTCTGGAC+CGG | + | chr3_1:16314786-16314805 | None:intergenic | 40.0% | |
| ATCGAATAGGTTACATAGGC+AGG | + | chr3_1:16315036-16315055 | None:intergenic | 40.0% | |
| TATCCGCAATCGCATATTCT+GGG | + | chr3_1:16315166-16315185 | None:intergenic | 40.0% | |
| ATATCCGCAATCGCATATTC+TGG | + | chr3_1:16315167-16315186 | None:intergenic | 40.0% | |
| TAAAATATCCCAGCTGGCAA+GGG | + | chr3_1:16315218-16315237 | None:intergenic | 40.0% | |
| ATAAAATATCCCAGCTGGCA+AGG | + | chr3_1:16315219-16315238 | None:intergenic | 40.0% | |
| CTCACATAAAATATCCCAGC+TGG | + | chr3_1:16315224-16315243 | None:intergenic | 40.0% | |
| CCTCTTTCTTCCTTTGCTTT+GGG | - | chr3_1:16315248-16315267 | Msa0350890:intron | 40.0% | |
| !! | ATGGAATGGCATTGGCTTAT+GGG | + | chr3_1:16315311-16315330 | None:intergenic | 40.0% |
| !! | AATGGAATGGCATTGGCTTA+TGG | + | chr3_1:16315312-16315331 | None:intergenic | 40.0% |
| GGAAATGAATGGAATGGCAT+TGG | + | chr3_1:16315319-16315338 | None:intergenic | 40.0% | |
| ! | GTAACGGGAAATGAATGGAA+TGG | + | chr3_1:16315325-16315344 | None:intergenic | 40.0% |
| ATTAATGGCTGGTAGGTAAC+GGG | + | chr3_1:16315340-16315359 | None:intergenic | 40.0% | |
| GTGTGACACGGTAAATAATC+TGG | + | chr3_1:16315416-16315435 | None:intergenic | 40.0% | |
| !!! | GTGAGGCAGTTTTTTGGATT+AGG | + | chr3_1:16315455-16315474 | None:intergenic | 40.0% |
| AATCCAAAAAACTGCCTCAC+TGG | - | chr3_1:16315455-16315474 | Msa0350890:CDS | 40.0% | |
| ATGATATTTGGACTCCAGTG+AGG | + | chr3_1:16315472-16315491 | None:intergenic | 40.0% | |
| GGGAATTCCTCAATAATGTC+TGG | + | chr3_1:16315568-16315587 | None:intergenic | 40.0% | |
| TTTGGTGAAGGGTTAAAGGT+TGG | - | chr3_1:16315698-16315717 | Msa0350890:intron | 40.0% | |
| !! | GTAGTTTACATGGCTTTGGT+GGG | - | chr3_1:16315806-16315825 | Msa0350890:intron | 40.0% |
| CCTGAAAGGAAGGAGTTAAA+TGG | + | chr3_1:16315839-16315858 | None:intergenic | 40.0% | |
| CCATTTAACTCCTTCCTTTC+AGG | - | chr3_1:16315836-16315855 | Msa0350890:intron | 40.0% | |
| GTGTGCATAAATTGCATAGC+TGG | + | chr3_1:16315933-16315952 | None:intergenic | 40.0% | |
| ! | ATTACGGGTTGAAAGTTGCA+TGG | + | chr3_1:16316205-16316224 | None:intergenic | 40.0% |
| ! | AAAATCTGCAAAAGCACGCT+CGG | + | chr3_1:16316443-16316462 | None:intergenic | 40.0% |
| GGAAGTTCATGATGACCAAA+TGG | + | chr3_1:16316486-16316505 | None:intergenic | 40.0% | |
| TTGGTCATCATGAACTTCCT+TGG | - | chr3_1:16316487-16316506 | Msa0350890:intron | 40.0% | |
| AAAGGAAAGGGCAAATATCC+AGG | + | chr3_1:16316633-16316652 | None:intergenic | 40.0% | |
| CCAAATTCCCAGAAAAGGAA+AGG | + | chr3_1:16316646-16316665 | None:intergenic | 40.0% | |
| !! | CCTTTCCTTTTCTGGGAATT+TGG | - | chr3_1:16316643-16316662 | Msa0350890:intron | 40.0% |
| CCAAACCAAATTCCCAGAAA+AGG | + | chr3_1:16316651-16316670 | None:intergenic | 40.0% | |
| !! | CCTTTTCTGGGAATTTGGTT+TGG | - | chr3_1:16316648-16316667 | Msa0350890:intron | 40.0% |
| GATGGTGAAGTCTACTGCTA+AGG | - | chr3_1:16314259-16314278 | Msa0350890:intron | 45.0% | |
| AAGATCTTCTCCGCACTCTT+TGG | - | chr3_1:16314288-16314307 | Msa0350890:intron | 45.0% | |
| AGAAATGCAGAGGGAAAGAG+AGG | + | chr3_1:16314353-16314372 | None:intergenic | 45.0% | |
| !! | GAAAGGAAGTACCTGGATGA+GGG | + | chr3_1:16314459-16314478 | None:intergenic | 45.0% |
| !! | ATGCAAGGAAAGGAAGTACC+TGG | + | chr3_1:16314466-16314485 | None:intergenic | 45.0% |
| ! | AGACAATGTTAGCATTGGGG+TGG | - | chr3_1:16314680-16314699 | Msa0350890:intron | 45.0% |
| GGGTGGAAGAAACTCTTATC+TGG | - | chr3_1:16314697-16314716 | Msa0350890:intron | 45.0% | |
| TGTGAAGTAACTTCTGGACC+GGG | + | chr3_1:16314785-16314804 | None:intergenic | 45.0% | |
| !! | TGCAGAAGGCACTTGAAACA+TGG | - | chr3_1:16314809-16314828 | Msa0350890:intron | 45.0% |
| AGGCACTTGAAACATGGACA+CGG | - | chr3_1:16314815-16314834 | Msa0350890:intron | 45.0% | |
| AATGCATGTAAGTGCGTGCA+AGG | + | chr3_1:16314893-16314912 | None:intergenic | 45.0% | |
| GCTCACCAATCTCGAATCAT+TGG | + | chr3_1:16314928-16314947 | None:intergenic | 45.0% | |
| TGAAGGAAGTAGATTAGGGC+AGG | - | chr3_1:16314974-16314993 | Msa0350890:intron | 45.0% | |
| GCGAGTTCTCATACATTTCC+TGG | + | chr3_1:16315009-16315028 | None:intergenic | 45.0% | |
| ATAGGTTACATAGGCAGGAC+AGG | + | chr3_1:16315031-16315050 | None:intergenic | 45.0% | |
| ACCTATTCGATTCACTCTCC+TGG | - | chr3_1:16315045-16315064 | Msa0350890:intron | 45.0% | |
| ACCAGGAGAGTGAATCGAAT+AGG | + | chr3_1:16315049-16315068 | None:intergenic | 45.0% | |
| GGATCTGCATCAAAGGGAAA+TGG | - | chr3_1:16315098-16315117 | Msa0350890:intron | 45.0% | |
| TTGCATTTCCTGCAATGTCC+AGG | + | chr3_1:16315124-16315143 | None:intergenic | 45.0% | |
| GCAAATGTATAGGCTGCACA+TGG | - | chr3_1:16315140-16315159 | Msa0350890:intron | 45.0% | |
| ATCAGCCCTATAGCGTATTC+AGG | + | chr3_1:16315191-16315210 | None:intergenic | 45.0% | |
| GCCTCTTTCTTCCTTTGCTT+TGG | - | chr3_1:16315247-16315266 | Msa0350890:intron | 45.0% | |
| CCCAAAGCAAAGGAAGAAAG+AGG | + | chr3_1:16315251-16315270 | None:intergenic | 45.0% | |
| !! | TGGAATGGCATTGGCTTATG+GGG | + | chr3_1:16315310-16315329 | None:intergenic | 45.0% |
| !! | GGTAGGTAACGGGAAATGAA+TGG | + | chr3_1:16315330-16315349 | None:intergenic | 45.0% |
| !!! | ACTCCAGTGAGGCAGTTTTT+TGG | + | chr3_1:16315461-16315480 | None:intergenic | 45.0% |
| CCAAAGCCATGTAAACTACC+TGG | + | chr3_1:16315805-16315824 | None:intergenic | 45.0% | |
| CCAGGTAGTTTACATGGCTT+TGG | - | chr3_1:16315802-16315821 | Msa0350890:intron | 45.0% | |
| !! | GGTAGTTTACATGGCTTTGG+TGG | - | chr3_1:16315805-16315824 | Msa0350890:intron | 45.0% |
| ! | AAATCTGCAAAAGCACGCTC+GGG | + | chr3_1:16316442-16316461 | None:intergenic | 45.0% |
| ATAGAGCAGAAACCTGGGAT+AGG | - | chr3_1:16316589-16316608 | Msa0350890:intron | 45.0% | |
| TCAGACAACTACGACAGACG+TGG | + | chr3_1:16313174-16313193 | None:intergenic | 50.0% | |
| AGTGAAGGCGAGGTTACCTT+TGG | + | chr3_1:16313206-16313225 | None:intergenic | 50.0% | |
| TGGGTCAGATGCAGCTGATA+CGG | - | chr3_1:16313751-16313770 | Msa0350890:intron | 50.0% | |
| CACAATCGCAATCTCAGTCG+TGG | + | chr3_1:16313818-16313837 | None:intergenic | 50.0% | |
| CACGACTGAGATTGCGATTG+TGG | - | chr3_1:16313816-16313835 | Msa0350890:intron | 50.0% | |
| TGCAACCCCCACAAATCTCA+AGG | - | chr3_1:16314322-16314341 | Msa0350890:intron | 50.0% | |
| !! | GGAAAGGAAGTACCTGGATG+AGG | + | chr3_1:16314460-16314479 | None:intergenic | 50.0% |
| !!! | CTTTGTTTTGCTGTCGGACC+AGG | + | chr3_1:16315066-16315085 | None:intergenic | 50.0% |
| TTCCACGGGATCTGCATCAA+AGG | - | chr3_1:16315091-16315110 | Msa0350890:intron | 50.0% | |
| TCCACGGGATCTGCATCAAA+GGG | - | chr3_1:16315092-16315111 | Msa0350890:intron | 50.0% | |
| TGCATCAAAGGGAAATGGCC+TGG | - | chr3_1:16315103-16315122 | Msa0350890:intron | 50.0% | |
| TGGCCCAGAATATGCGATTG+CGG | - | chr3_1:16315160-16315179 | Msa0350890:intron | 50.0% | |
| TGATCTTTCCCTTGCCAGCT+GGG | - | chr3_1:16315207-16315226 | Msa0350890:intron | 50.0% | |
| !! | TCTTCCTTTGCTTTGGGACG+AGG | - | chr3_1:16315254-16315273 | Msa0350890:intron | 50.0% |
| CACAATTGTTGTGGTGCTCG+AGG | + | chr3_1:16315519-16315538 | None:intergenic | 50.0% | |
| ! | AGAAAGCACGCCTGAAAGGA+AGG | + | chr3_1:16315849-16315868 | None:intergenic | 50.0% |
| ACTTGGATCCGGAGACAAAC+TGG | + | chr3_1:16316085-16316104 | None:intergenic | 50.0% | |
| GTGCAATGTGGTGCTCCATT+TGG | - | chr3_1:16316468-16316487 | Msa0350890:intron | 50.0% | |
| GTTGGATCTGAGTGAAGGCG+AGG | + | chr3_1:16313216-16313235 | None:intergenic | 55.0% | |
| CTCATATTGTGAGCGCGTCG+TGG | - | chr3_1:16313774-16313793 | Msa0350890:intron | 55.0% | |
| TGTCTTCACTGCCCTCATCC+AGG | - | chr3_1:16314445-16314464 | Msa0350890:intron | 55.0% | |
| TCCCTTTGATGCAGATCCCG+TGG | + | chr3_1:16315096-16315115 | None:intergenic | 55.0% | |
| GGAAATGGCCTGGACATTGC+AGG | - | chr3_1:16315113-16315132 | Msa0350890:intron | 55.0% | |
| CTGATCTTTCCCTTGCCAGC+TGG | - | chr3_1:16315206-16315225 | Msa0350890:intron | 55.0% | |
| ! | CGCAAGAAAGCACGCCTGAA+AGG | + | chr3_1:16315853-16315872 | None:intergenic | 55.0% |
| TCAGGCGTGCTTTCTTGCGT+AGG | - | chr3_1:16315854-16315873 | Msa0350890:intron | 55.0% | |
| CAGGCGTGCTTTCTTGCGTA+GGG | - | chr3_1:16315855-16315874 | Msa0350890:intron | 55.0% | |
| CTGCAGTTCTCGCTGGTAAG+TGG | - | chr3_1:16315879-16315898 | Msa0350890:intron | 55.0% | |
| CAGGCCTCGTCCCAAAGCAA+AGG | + | chr3_1:16315261-16315280 | None:intergenic | 60.0% | |
| ! | TATGGGGCACTCCCTCTGGA+TGG | + | chr3_1:16315294-16315313 | None:intergenic | 60.0% |
| GTAGGGACTGCAGTTCTCGC+TGG | - | chr3_1:16315872-16315891 | Msa0350890:intron | 60.0% | |
| TAGGGCAGGCTAACAGCGCC+AGG | - | chr3_1:16314988-16315007 | Msa0350890:intron | 65.0% | |
| ! | GGCTTATGGGGCACTCCCTC+TGG | + | chr3_1:16315298-16315317 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 16313151 | 16316761 | 16313151 | ID=Msa0350890;Name=Msa0350890 |
| chr3_1 | mRNA | 16313151 | 16316761 | 16313151 | ID=Msa0350890-mRNA-1;Parent=Msa0350890;Name=Msa0350890-mRNA-1;_AED=0.31;_eAED=0.31;_QI=80|1|1|1|0.66|0.42|7|220|115 |
| chr3_1 | exon | 16313151 | 16313359 | 16313151 | ID=Msa0350890-mRNA-1:exon:3992;Parent=Msa0350890-mRNA-1 |
| chr3_1 | exon | 16313388 | 16313482 | 16313388 | ID=Msa0350890-mRNA-1:exon:3991;Parent=Msa0350890-mRNA-1 |
| chr3_1 | exon | 16313783 | 16313826 | 16313783 | ID=Msa0350890-mRNA-1:exon:3990;Parent=Msa0350890-mRNA-1 |
| chr3_1 | exon | 16314019 | 16314106 | 16314019 | ID=Msa0350890-mRNA-1:exon:3989;Parent=Msa0350890-mRNA-1 |
| chr3_1 | exon | 16315446 | 16315493 | 16315446 | ID=Msa0350890-mRNA-1:exon:3988;Parent=Msa0350890-mRNA-1 |
| chr3_1 | exon | 16315569 | 16315674 | 16315569 | ID=Msa0350890-mRNA-1:exon:3987;Parent=Msa0350890-mRNA-1 |
| chr3_1 | exon | 16316704 | 16316761 | 16316704 | ID=Msa0350890-mRNA-1:exon:3986;Parent=Msa0350890-mRNA-1 |
| chr3_1 | five_prime_UTR | 16316704 | 16316761 | 16316704 | ID=Msa0350890-mRNA-1:five_prime_utr;Parent=Msa0350890-mRNA-1 |
| chr3_1 | five_prime_UTR | 16315653 | 16315674 | 16315653 | ID=Msa0350890-mRNA-1:five_prime_utr;Parent=Msa0350890-mRNA-1 |
| chr3_1 | CDS | 16315569 | 16315652 | 16315569 | ID=Msa0350890-mRNA-1:cds;Parent=Msa0350890-mRNA-1 |
| chr3_1 | CDS | 16315446 | 16315493 | 16315446 | ID=Msa0350890-mRNA-1:cds;Parent=Msa0350890-mRNA-1 |
| chr3_1 | CDS | 16314019 | 16314106 | 16314019 | ID=Msa0350890-mRNA-1:cds;Parent=Msa0350890-mRNA-1 |
| chr3_1 | CDS | 16313783 | 16313826 | 16313783 | ID=Msa0350890-mRNA-1:cds;Parent=Msa0350890-mRNA-1 |
| chr3_1 | CDS | 16313399 | 16313482 | 16313399 | ID=Msa0350890-mRNA-1:cds;Parent=Msa0350890-mRNA-1 |
| chr3_1 | three_prime_UTR | 16313388 | 16313398 | 16313388 | ID=Msa0350890-mRNA-1:three_prime_utr;Parent=Msa0350890-mRNA-1 |
| chr3_1 | three_prime_UTR | 16313151 | 16313359 | 16313151 | ID=Msa0350890-mRNA-1:three_prime_utr;Parent=Msa0350890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
