Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072960 | XP_003624926.1 | 99.109 | 449 | 4 | 0 | 1 | 449 | 1 | 449 | 0.0 | 940 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072960 | sp|P29514|TBB6_ARATH | 98.423 | 444 | 7 | 0 | 1 | 444 | 1 | 444 | 0.0 | 926 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072960 | G7L5V0 | 99.109 | 449 | 4 | 0 | 1 | 449 | 1 | 449 | 0.0 | 940 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000560 | Msa1072960 | 0.821594 | 3.715792e-53 | -8.615850e-47 |
| Msa0002420 | Msa1072960 | 0.818437 | 1.961481e-52 | -8.615850e-47 |
| Msa0014770 | Msa1072960 | 0.801497 | 8.757514e-49 | -8.615850e-47 |
| Msa0017960 | Msa1072960 | 0.821365 | 4.197436e-53 | -8.615850e-47 |
| Msa0028440 | Msa1072960 | 0.824080 | 9.796891e-54 | -8.615850e-47 |
| Msa0051920 | Msa1072960 | 0.837132 | 6.224802e-57 | -8.615850e-47 |
| Msa0078500 | Msa1072960 | 0.841627 | 4.237785e-58 | -8.615850e-47 |
| Msa0618240 | Msa1072960 | 0.819406 | 1.180781e-52 | -8.615850e-47 |
| Msa0623900 | Msa1072960 | 0.805915 | 1.059900e-49 | -8.615850e-47 |
| Msa0623910 | Msa1072960 | 0.803777 | 2.965401e-49 | -8.615850e-47 |
| Msa0660370 | Msa1072960 | 0.831650 | 1.480437e-55 | -8.615850e-47 |
| Msa0681260 | Msa1072960 | 0.825832 | 3.779930e-54 | -8.615850e-47 |
| Msa0681280 | Msa1072960 | 0.823136 | 1.629600e-53 | -8.615850e-47 |
| Msa0685480 | Msa1072960 | 0.801268 | 9.756461e-49 | -8.615850e-47 |
| Msa0687460 | Msa1072960 | 0.817782 | 2.758621e-52 | -8.615850e-47 |
| Msa0692790 | Msa1072960 | 0.829379 | 5.320722e-55 | -8.615850e-47 |
| Msa0702000 | Msa1072960 | 0.804433 | 2.165576e-49 | -8.615850e-47 |
| Msa0703950 | Msa1072960 | 0.804132 | 2.502135e-49 | -8.615850e-47 |
| Msa0707670 | Msa1072960 | 0.800261 | 1.565553e-48 | -8.615850e-47 |
| Msa0778550 | Msa1072960 | 0.810858 | 9.351248e-51 | -8.615850e-47 |
| Msa0835930 | Msa1072960 | 0.800902 | 1.158907e-48 | -8.615850e-47 |
| Msa0125870 | Msa1072960 | 0.821536 | 3.832103e-53 | -8.615850e-47 |
| Msa0126210 | Msa1072960 | 0.860246 | 2.361107e-63 | -8.615850e-47 |
| Msa0136650 | Msa1072960 | 0.814061 | 1.865933e-51 | -8.615850e-47 |
| Msa0164610 | Msa1072960 | 0.824011 | 1.016880e-53 | -8.615850e-47 |
| Msa0168480 | Msa1072960 | 0.834260 | 3.322835e-56 | -8.615850e-47 |
| Msa0222560 | Msa1072960 | 0.802432 | 5.627398e-49 | -8.615850e-47 |
| Msa0383320 | Msa1072960 | 0.805832 | 1.103408e-49 | -8.615850e-47 |
| Msa0421180 | Msa1072960 | 0.807481 | 4.950339e-50 | -8.615850e-47 |
| Msa0427930 | Msa1072960 | 0.823721 | 1.188980e-53 | -8.615850e-47 |
| Msa0430260 | Msa1072960 | 0.809968 | 1.455488e-50 | -8.615850e-47 |
| Msa0433470 | Msa1072960 | 0.802486 | 5.484628e-49 | -8.615850e-47 |
| Msa0465810 | Msa1072960 | 0.826219 | 3.059090e-54 | -8.615850e-47 |
| Msa0981320 | Msa1072960 | 0.827638 | 1.400547e-54 | -8.615850e-47 |
| Msa0982650 | Msa1072960 | 0.829126 | 6.129127e-55 | -8.615850e-47 |
| Msa1034600 | Msa1072960 | 0.814151 | 1.783040e-51 | -8.615850e-47 |
| Msa1037640 | Msa1072960 | 0.824504 | 7.786387e-54 | -8.615850e-47 |
| Msa1072960 | Msa1080000 | 0.800407 | 1.462594e-48 | -8.615850e-47 |
| Msa1072960 | Msa1104110 | 0.819185 | 1.326375e-52 | -8.615850e-47 |
| Msa1072960 | Msa1113340 | 0.853025 | 3.137928e-61 | -8.615850e-47 |
| Msa1072960 | Msa1123200 | 0.801093 | 1.059513e-48 | -8.615850e-47 |
| Msa1072960 | Msa1123210 | 0.841747 | 3.939763e-58 | -8.615850e-47 |
| Msa1072960 | Msa1130280 | 0.820221 | 7.690206e-53 | -8.615850e-47 |
| Msa1072960 | Msa1147700 | 0.828661 | 7.941583e-55 | -8.615850e-47 |
| Msa1072960 | Msa1160910 | 0.978884 | 9.077574e-147 | -8.615850e-47 |
| Msa1072960 | Msa1167470 | 0.812773 | 3.580832e-51 | -8.615850e-47 |
| Msa1072960 | Msa1174840 | 0.811377 | 7.216185e-51 | -8.615850e-47 |
| Msa1072960 | Msa1207190 | 0.812882 | 3.388995e-51 | -8.615850e-47 |
| Msa1072960 | Msa1242020 | 0.813987 | 1.937587e-51 | -8.615850e-47 |
| Msa1072960 | Msa1257440 | 0.814010 | 1.915523e-51 | -8.615850e-47 |
| Msa1072960 | Msa1305250 | 0.816400 | 5.638931e-52 | -8.615850e-47 |
| Msa1072960 | Msa1306640 | 0.843089 | 1.735800e-58 | -8.615850e-47 |
| Msa1072960 | Msa1315130 | 0.818864 | 1.569304e-52 | -8.615850e-47 |
| Msa1072960 | Msa1315160 | 0.803822 | 2.901800e-49 | -8.615850e-47 |
| Msa1072960 | Msa1322430 | 0.821208 | 4.561195e-53 | -8.615850e-47 |
| Msa1072960 | Msa1360960 | 0.828985 | 6.631067e-55 | -8.615850e-47 |
| Msa1072960 | Msa1375280 | 0.831060 | 2.067261e-55 | -8.615850e-47 |
| Msa1072960 | Msa1411790 | 0.811469 | 6.891932e-51 | -8.615850e-47 |
| Msa0293040 | Msa1072960 | 0.806821 | 6.829329e-50 | -8.615850e-47 |
| Msa0301820 | Msa1072960 | 0.805845 | 1.096704e-49 | -8.615850e-47 |
| Msa0307280 | Msa1072960 | 0.995343 | 2.511478e-215 | -8.615850e-47 |
| Msa0330520 | Msa1072960 | 0.805122 | 1.554864e-49 | -8.615850e-47 |
| Msa0350890 | Msa1072960 | 0.800168 | 1.635558e-48 | -8.615850e-47 |
| Msa0358280 | Msa1072960 | 0.818177 | 2.245583e-52 | -8.615850e-47 |
| Msa0358310 | Msa1072960 | 0.828208 | 1.021752e-54 | -8.615850e-47 |
| Msa0361270 | Msa1072960 | 0.800431 | 1.445614e-48 | -8.615850e-47 |
| Msa0484150 | Msa1072960 | 0.814729 | 1.328103e-51 | -8.615850e-47 |
| Msa0484570 | Msa1072960 | 0.801959 | 7.038406e-49 | -8.615850e-47 |
| Msa0492900 | Msa1072960 | 0.810966 | 8.860956e-51 | -8.615850e-47 |
| Msa0495300 | Msa1072960 | 0.802122 | 6.517607e-49 | -8.615850e-47 |
| Msa0500380 | Msa1072960 | 0.821546 | 3.811619e-53 | -8.615850e-47 |
| Msa0518590 | Msa1072960 | 0.810973 | 8.832945e-51 | -8.615850e-47 |
| Msa0880270 | Msa1072960 | 0.839858 | 1.232484e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072960 | MtrunA17_Chr7g0255791 | 99.109 | 449 | 4 | 0 | 1 | 449 | 1 | 449 | 0.0 | 940 |
| Msa1072960 | MtrunA17_Chr1g0203181 | 97.209 | 430 | 12 | 0 | 1 | 430 | 1 | 430 | 0.0 | 856 |
| Msa1072960 | MtrunA17_Chr4g0008361 | 96.512 | 430 | 15 | 0 | 1 | 430 | 1 | 430 | 0.0 | 853 |
| Msa1072960 | MtrunA17_Chr4g0008401 | 95.814 | 430 | 18 | 0 | 1 | 430 | 1 | 430 | 0.0 | 848 |
| Msa1072960 | MtrunA17_Chr2g0292921 | 95.349 | 430 | 20 | 0 | 1 | 430 | 1 | 430 | 0.0 | 845 |
| Msa1072960 | MtrunA17_Chr4g0051631 | 93.953 | 430 | 26 | 0 | 1 | 430 | 1 | 430 | 0.0 | 834 |
| Msa1072960 | MtrunA17_Chr8g0393021 | 91.461 | 445 | 36 | 2 | 1 | 443 | 1 | 445 | 0.0 | 833 |
| Msa1072960 | MtrunA17_Chr4g0007371 | 93.750 | 432 | 25 | 1 | 1 | 430 | 1 | 432 | 0.0 | 832 |
| Msa1072960 | MtrunA17_Chr3g0142731 | 93.519 | 432 | 26 | 1 | 1 | 430 | 1 | 432 | 0.0 | 832 |
| Msa1072960 | MtrunA17_Chr8g0386781 | 92.326 | 430 | 33 | 0 | 1 | 430 | 1 | 430 | 0.0 | 823 |
| Msa1072960 | MtrunA17_Chr8g0378821 | 41.244 | 434 | 245 | 3 | 1 | 424 | 1 | 434 | 7.91e-124 | 367 |
| Msa1072960 | MtrunA17_Chr1g0206881 | 41.280 | 453 | 246 | 5 | 1 | 440 | 1 | 446 | 3.65e-123 | 365 |
| Msa1072960 | MtrunA17_Chr3g0140821 | 41.648 | 437 | 239 | 4 | 1 | 424 | 1 | 434 | 4.48e-123 | 365 |
| Msa1072960 | MtrunA17_Chr4g0054511 | 41.419 | 437 | 240 | 4 | 1 | 424 | 1 | 434 | 1.56e-122 | 364 |
| Msa1072960 | MtrunA17_Chr7g0253411 | 40.553 | 434 | 248 | 3 | 1 | 424 | 1 | 434 | 4.46e-122 | 363 |
| Msa1072960 | MtrunA17_Chr6g0461281 | 39.910 | 446 | 257 | 3 | 1 | 435 | 1 | 446 | 1.24e-119 | 356 |
| Msa1072960 | MtrunA17_Chr2g0300671 | 37.045 | 440 | 264 | 5 | 1 | 431 | 1 | 436 | 7.28e-100 | 305 |
| Msa1072960 | MtrunA17_Chr2g0300491 | 36.564 | 454 | 272 | 6 | 1 | 445 | 1 | 447 | 5.99e-99 | 305 |
| Msa1072960 | MtrunA17_Chr7g0275431 | 34.932 | 438 | 268 | 7 | 2 | 423 | 3 | 439 | 5.75e-95 | 294 |
| Msa1072960 | MtrunA17_Chr3g0109241 | 31.111 | 135 | 85 | 2 | 269 | 395 | 4 | 138 | 7.09e-20 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072960 | AT5G12250.1 | 98.423 | 444 | 7 | 0 | 1 | 444 | 1 | 444 | 0.0 | 926 |
| Msa1072960 | AT5G62690.1 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 853 |
| Msa1072960 | AT5G62700.1 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 853 |
| Msa1072960 | AT5G23860.2 | 96.744 | 430 | 14 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| Msa1072960 | AT5G23860.1 | 96.744 | 430 | 14 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| Msa1072960 | AT2G29550.1 | 95.824 | 431 | 18 | 0 | 1 | 431 | 1 | 431 | 0.0 | 847 |
| Msa1072960 | AT1G75780.1 | 92.889 | 450 | 27 | 2 | 1 | 449 | 1 | 446 | 0.0 | 833 |
| Msa1072960 | AT1G20010.1 | 93.039 | 431 | 29 | 1 | 1 | 430 | 1 | 431 | 0.0 | 830 |
| Msa1072960 | AT5G44340.1 | 92.558 | 430 | 32 | 0 | 1 | 430 | 1 | 430 | 0.0 | 828 |
| Msa1072960 | AT4G20890.1 | 92.558 | 430 | 32 | 0 | 1 | 430 | 1 | 430 | 0.0 | 825 |
| Msa1072960 | AT1G64740.1 | 41.244 | 434 | 245 | 3 | 1 | 424 | 1 | 434 | 3.81e-124 | 369 |
| Msa1072960 | AT5G19780.1 | 41.244 | 434 | 245 | 3 | 1 | 424 | 1 | 434 | 8.23e-124 | 367 |
| Msa1072960 | AT5G19770.1 | 41.244 | 434 | 245 | 3 | 1 | 424 | 1 | 434 | 8.23e-124 | 367 |
| Msa1072960 | AT1G50010.1 | 41.648 | 437 | 239 | 4 | 1 | 424 | 1 | 434 | 6.17e-122 | 363 |
| Msa1072960 | AT1G04820.1 | 41.648 | 437 | 239 | 4 | 1 | 424 | 1 | 434 | 6.17e-122 | 363 |
| Msa1072960 | AT4G14960.2 | 41.648 | 437 | 239 | 4 | 1 | 424 | 1 | 434 | 6.37e-122 | 363 |
| Msa1072960 | AT4G14960.1 | 41.645 | 389 | 211 | 4 | 1 | 376 | 1 | 386 | 2.87e-102 | 311 |
| Msa1072960 | AT5G05620.1 | 35.160 | 438 | 267 | 7 | 2 | 423 | 3 | 439 | 3.12e-95 | 295 |
| Msa1072960 | AT3G61650.1 | 35.160 | 438 | 267 | 7 | 2 | 423 | 3 | 439 | 4.59e-95 | 295 |
Find 181 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTGAAATTGGGTAAAT+TGG | 0.086298 | 7_2:+70254282 | None:intergenic |
| ATAGATATCTTTATTGAAAT+TGG | 0.097354 | 7_2:+70254273 | None:intergenic |
| CTTCGCTCTGTTGTCCAAAT+TGG | 0.193911 | 7_2:+70254557 | None:intergenic |
| ACCAGATCGGTTCAAAATTC+TGG | 0.202910 | 7_2:-70256887 | Msa1072960:CDS |
| CCCTCGTCTGCACTTCTTCA+TGG | 0.225491 | 7_2:-70255271 | Msa1072960:CDS |
| TCCATGGCCTCCACCTTTAT+TGG | 0.234232 | 7_2:-70254967 | Msa1072960:CDS |
| ACACTTGATTTAACATTGTT+TGG | 0.235866 | 7_2:+70255015 | None:intergenic |
| TGAGATTCACAGCCAGTTTC+CGG | 0.253872 | 7_2:+70255301 | None:intergenic |
| TCACTGCTTCTGCCATGTTC+AGG | 0.262035 | 7_2:-70255119 | Msa1072960:CDS |
| CATTTGCTCATCCACCTCTT+TGG | 0.277735 | 7_2:+70255083 | None:intergenic |
| CACATCTGCTGGGTGAGTTC+TGG | 0.279765 | 7_2:+70255192 | None:intergenic |
| GTTATTGAAGCAAAGAAATT+AGG | 0.285359 | 7_2:+70257262 | None:intergenic |
| TGGTAACTCAACCTCAATTC+AGG | 0.292483 | 7_2:-70254947 | Msa1072960:CDS |
| ATAAAGAATCAAGAATGTTT+TGG | 0.314574 | 7_2:+70257382 | None:intergenic |
| TTGTTTCTTATATCTGCTAT+TGG | 0.318496 | 7_2:-70254459 | Msa1072960:three_prime_UTR |
| AGCAGCACACATCATGTTCT+TGG | 0.331795 | 7_2:+70255164 | None:intergenic |
| TGACCGAAGACGAAGTTATC+AGG | 0.336132 | 7_2:+70256669 | None:intergenic |
| GACGAGTTTGGATGGGAAAA+TGG | 0.336979 | 7_2:+70257081 | None:intergenic |
| TGAGGTTGAGTTACCAATAA+AGG | 0.339217 | 7_2:+70254954 | None:intergenic |
| TCCTTTCGCCCAATTGTTAC+CGG | 0.341476 | 7_2:+70256638 | None:intergenic |
| TTCGCTCTGTTGTCCAAATT+GGG | 0.342585 | 7_2:+70254558 | None:intergenic |
| CCTCAATTCAGGAAATGTTT+AGG | 0.342965 | 7_2:-70254936 | Msa1072960:CDS |
| ATCTATTTGTTTCTGTATGT+TGG | 0.344897 | 7_2:-70254491 | Msa1072960:three_prime_UTR |
| TCTTGGAATCCCACATCTGC+TGG | 0.346211 | 7_2:+70255181 | None:intergenic |
| CGCTTTATGATATCTGCTTC+AGG | 0.346443 | 7_2:-70256223 | Msa1072960:CDS |
| AGTCCGGTGCCGGTAACAAT+TGG | 0.346744 | 7_2:-70256647 | Msa1072960:CDS |
| GTTTCAGGTGTGTCATTCAT+TGG | 0.347553 | 7_2:-70256444 | Msa1072960:CDS |
| CACTTGATTTAACATTGTTT+GGG | 0.358488 | 7_2:+70255016 | None:intergenic |
| AACATACAGAAACAAATAGA+TGG | 0.359403 | 7_2:+70254493 | None:intergenic |
| ATAGGAATGACAAACTATTA+AGG | 0.365870 | 7_2:+70254427 | None:intergenic |
| CAACTCTGATCTCCGGAAAC+TGG | 0.369333 | 7_2:-70255313 | Msa1072960:CDS |
| ACAGAAAGAGTAGCATTATA+AGG | 0.371726 | 7_2:+70256296 | None:intergenic |
| GAGTGAGAGAGTGACGAGTT+TGG | 0.377145 | 7_2:+70257069 | None:intergenic |
| GACAACAGAGCGAAGGGTAG+TGG | 0.379950 | 7_2:-70254549 | Msa1072960:three_prime_UTR |
| GAGAATTGTGATTGTCTTCA+AGG | 0.384367 | 7_2:-70256555 | Msa1072960:intron |
| TAGATATCTTTATTGAAATT+GGG | 0.386296 | 7_2:+70254274 | None:intergenic |
| TTTCAGGTGTGTCATTCATT+GGG | 0.392158 | 7_2:-70256443 | Msa1072960:CDS |
| TTATTGAAATTGGGTAAATT+GGG | 0.393352 | 7_2:+70254283 | None:intergenic |
| CATTCATTGGGAGGAGGAAC+TGG | 0.394091 | 7_2:-70256431 | Msa1072960:CDS |
| AGTAGGAAGAGTTCTTGTTC+TGG | 0.394999 | 7_2:+70255052 | None:intergenic |
| AGCAATTTACTGCTATGTTT+AGG | 0.401883 | 7_2:-70254903 | Msa1072960:CDS |
| CACTGCTTCTGCCATGTTCA+GGG | 0.405397 | 7_2:-70255118 | Msa1072960:CDS |
| AAAATGTGGACAAAATATAT+TGG | 0.405451 | 7_2:+70257135 | None:intergenic |
| AGAGAATGGAGATCCCAATT+TGG | 0.413216 | 7_2:-70254571 | Msa1072960:three_prime_UTR |
| CCTAAACATTTCCTGAATTG+AGG | 0.415373 | 7_2:+70254936 | None:intergenic |
| GAGAGAGTGACGAGTTTGGA+TGG | 0.420666 | 7_2:+70257073 | None:intergenic |
| CGCCCAATTGTTACCGGCAC+CGG | 0.422209 | 7_2:+70256644 | None:intergenic |
| ACTTGCTGTCTTCGTTTCCC+TGG | 0.423010 | 7_2:-70255342 | Msa1072960:CDS |
| AGAGAAATTCTTCATGTTCA+AGG | 0.425268 | 7_2:-70256924 | Msa1072960:CDS |
| TGAGTTTCCGACGTATCTTC+CGG | 0.427531 | 7_2:+70256830 | None:intergenic |
| TTGGGAGGAGGAACTGGATC+TGG | 0.429347 | 7_2:-70256425 | Msa1072960:CDS |
| CCAGATCGGTTCAAAATTCT+GGG | 0.430206 | 7_2:-70256886 | Msa1072960:CDS |
| ACGCGCCATCCTCATGGACT+TGG | 0.430677 | 7_2:-70256745 | Msa1072960:CDS |
| TAAACCGCACATATATCTAT+TGG | 0.435124 | 7_2:-70254321 | Msa1072960:three_prime_UTR |
| AACGTCAACATCATCCTATC+AGG | 0.441581 | 7_2:+70256362 | None:intergenic |
| AACTTCGTCTTCGGTCAGTC+CGG | 0.442188 | 7_2:-70256663 | Msa1072960:CDS |
| CGTCTGCACTTCTTCATGGT+CGG | 0.448628 | 7_2:-70255267 | Msa1072960:CDS |
| CGAGCTGGATGTGGAGAGAA+TGG | 0.452558 | 7_2:-70254585 | Msa1072960:three_prime_UTR |
| TACTCTTTCTGTTCATCAGT+TGG | 0.454328 | 7_2:-70256285 | Msa1072960:CDS |
| ACCAATAAAGGTGGAGGCCA+TGG | 0.456675 | 7_2:+70254966 | None:intergenic |
| CAGTGGCATCCTGGTACTGC+TGG | 0.458734 | 7_2:+70254785 | None:intergenic |
| ATCCTCATGGACTTGGAGCC+TGG | 0.462721 | 7_2:-70256738 | Msa1072960:CDS |
| TACTGCTATGTTTAGGAGGA+AGG | 0.463039 | 7_2:-70254896 | Msa1072960:CDS |
| TCTCGATGTTGTTCGTAAAG+AGG | 0.464617 | 7_2:-70256580 | Msa1072960:CDS |
| GGACTTGGAGCCTGGTACAA+TGG | 0.467426 | 7_2:-70256730 | Msa1072960:CDS |
| CGTCCTGATAACTTCGTCTT+CGG | 0.467522 | 7_2:-70256672 | Msa1072960:CDS |
| AGGAGGAACTGGATCTGGAA+TGG | 0.468617 | 7_2:-70256420 | Msa1072960:CDS |
| GGAGGAACTGGATCTGGAAT+GGG | 0.469656 | 7_2:-70256419 | Msa1072960:CDS |
| CTTCATCAGCAGTGGCATCC+TGG | 0.470075 | 7_2:+70254776 | None:intergenic |
| GGATGGGAAAATGGTTGAGC+GGG | 0.475027 | 7_2:+70257090 | None:intergenic |
| TTCGGTGTTTCCTTCACCGA+AGG | 0.475471 | 7_2:-70256339 | Msa1072960:CDS |
| AAGAAGTGCAGACGAGGGAA+TGG | 0.475598 | 7_2:+70255276 | None:intergenic |
| ATGTGCGGTTTAACGTTGTT+CGG | 0.478040 | 7_2:+70254332 | None:intergenic |
| GGAGGAAGGCTTTCTTGCAT+TGG | 0.483915 | 7_2:-70254882 | Msa1072960:CDS |
| GATCGTTGGATGGAAACCTT+TGG | 0.485733 | 7_2:+70257188 | None:intergenic |
| GTCTTCGGTCAGTCCGGTGC+CGG | 0.488348 | 7_2:-70256657 | Msa1072960:CDS |
| GTCCGGTGCCGGTAACAATT+GGG | 0.494376 | 7_2:-70256646 | Msa1072960:CDS |
| GCTTTCTTGCATTGGTACAC+TGG | 0.499379 | 7_2:-70254874 | Msa1072960:CDS |
| AAGCTAATTACAAAGGATAG+AGG | 0.500490 | 7_2:+70254628 | None:intergenic |
| TGTTCCACGCGCCATCCTCA+TGG | 0.500720 | 7_2:-70256751 | Msa1072960:CDS |
| CAGAACTCACCCAGCAGATG+TGG | 0.503870 | 7_2:-70255191 | Msa1072960:CDS |
| TTAGAGAGGAATATCCTGAT+AGG | 0.506228 | 7_2:-70256376 | Msa1072960:CDS |
| GTCAACTCAACTCTGATCTC+CGG | 0.506307 | 7_2:-70255320 | Msa1072960:CDS |
| TGATGTGTGCTGCTGATCCT+AGG | 0.510462 | 7_2:-70255155 | Msa1072960:CDS |
| AGATCAGAGTTGAGTTGACC+AGG | 0.512852 | 7_2:+70255324 | None:intergenic |
| CAGGTGTGTCATTCATTGGG+AGG | 0.513562 | 7_2:-70256440 | Msa1072960:CDS |
| CCTTGTGTTGAATGACGAAA+TGG | 0.514569 | 7_2:+70257300 | None:intergenic |
| CTCATCTTCATCACTATCAC+AGG | 0.518767 | 7_2:-70257049 | Msa1072960:intron |
| TTGCATTGGTACACTGGTGA+AGG | 0.524227 | 7_2:-70254868 | Msa1072960:CDS |
| AGAAGTGCAGACGAGGGAAT+GGG | 0.530868 | 7_2:+70255277 | None:intergenic |
| CGAACACTGTCCATTGTACC+AGG | 0.531519 | 7_2:+70256720 | None:intergenic |
| TGATGAAGAAGGAGAATATG+AGG | 0.535322 | 7_2:-70254761 | Msa1072960:CDS |
| CTTGGAATCCCACATCTGCT+GGG | 0.536021 | 7_2:+70255182 | None:intergenic |
| AGAGAGTGACGAGTTTGGAT+GGG | 0.536270 | 7_2:+70257074 | None:intergenic |
| GTCTGAGTACCAGCAGTACC+AGG | 0.537588 | 7_2:-70254794 | Msa1072960:CDS |
| TTTCCGACGTATCTTCCGGT+TGG | 0.537588 | 7_2:+70256834 | None:intergenic |
| ACTCTTCCTACTTTGTTGAG+TGG | 0.537980 | 7_2:-70255041 | Msa1072960:CDS |
| AGAAAATGCTGATGAGTGTA+TGG | 0.538616 | 7_2:-70256261 | Msa1072960:CDS |
| GATGCCACTGCTGATGAAGA+AGG | 0.543436 | 7_2:-70254772 | Msa1072960:CDS |
| GCCGGTAACAATTGGGCGAA+AGG | 0.544358 | 7_2:-70256639 | Msa1072960:CDS |
| AGTGTTCGCACTGGTCCTTA+CGG | 0.544816 | 7_2:-70256705 | Msa1072960:CDS |
| CACGGTATTGCTGAGAGCCA+CGG | 0.544884 | 7_2:+70255226 | None:intergenic |
| GAGGGGATGTATGTACGAAA+AGG | 0.545167 | 7_2:+70257348 | None:intergenic |
| ATGTTCAAGGAGGACAATGC+GGG | 0.546684 | 7_2:-70256911 | Msa1072960:CDS |
| TTGAAGCAAAGAAATTAGGA+TGG | 0.548188 | 7_2:+70257266 | None:intergenic |
| AATTTACTGCTATGTTTAGG+AGG | 0.549323 | 7_2:-70254900 | Msa1072960:CDS |
| GGTAGTGGGAATTTAGTACA+TGG | 0.551971 | 7_2:-70254534 | Msa1072960:three_prime_UTR |
| TGGTGAAGGCATGGATGAGA+TGG | 0.552982 | 7_2:-70254854 | Msa1072960:CDS |
| ACGGTATTGCTGAGAGCCAC+GGG | 0.554335 | 7_2:+70255227 | None:intergenic |
| ATATGAGGACGAAGAGGACG+AGG | 0.557142 | 7_2:-70254746 | Msa1072960:CDS |
| CCATTTCGTCATTCAACACA+AGG | 0.559646 | 7_2:-70257300 | Msa1072960:five_prime_UTR |
| GTGAGGTAGCGACCATGCCT+AGG | 0.560055 | 7_2:+70255138 | None:intergenic |
| TTCTCCTTCTTCATCAGCAG+TGG | 0.564039 | 7_2:+70254768 | None:intergenic |
| CAATTCAGGAAATGTTTAGG+AGG | 0.566101 | 7_2:-70254933 | Msa1072960:CDS |
| TGAGAAGTGATGTGGATCGT+TGG | 0.566606 | 7_2:+70257174 | None:intergenic |
| ACCATGAAGAAGTGCAGACG+AGG | 0.568203 | 7_2:+70255270 | None:intergenic |
| GCAAAGAAATTAGGATGGGA+CGG | 0.568809 | 7_2:+70257271 | None:intergenic |
| AAGTGATGTGGATCGTTGGA+TGG | 0.569149 | 7_2:+70257178 | None:intergenic |
| TGCTCCTCGAGGTCTCTCCA+TGG | 0.570432 | 7_2:-70254983 | Msa1072960:CDS |
| GTATCAGAAACCTTCGGTGA+AGG | 0.572045 | 7_2:+70256329 | None:intergenic |
| GTTGATTTCGAAGATTAGAG+AGG | 0.576526 | 7_2:-70256390 | Msa1072960:CDS |
| TGAAGCAAAGAAATTAGGAT+GGG | 0.579190 | 7_2:+70257267 | None:intergenic |
| TGGGATCCACTCAACAAAGT+AGG | 0.583322 | 7_2:+70255035 | None:intergenic |
| ACAACAGTATCAGAAACCTT+CGG | 0.584973 | 7_2:+70256323 | None:intergenic |
| TTGGTACACTGGTGAAGGCA+TGG | 0.586360 | 7_2:-70254863 | Msa1072960:CDS |
| TGAGTTACCAATAAAGGTGG+AGG | 0.588019 | 7_2:+70254960 | None:intergenic |
| GAGCACGGCATAGATCCAAC+CGG | 0.589745 | 7_2:-70256849 | Msa1072960:CDS |
| ACAACAGAGCGAAGGGTAGT+GGG | 0.592753 | 7_2:-70254548 | Msa1072960:three_prime_UTR |
| GAAGTAGTTTGCGACGAGCA+CGG | 0.593265 | 7_2:-70256864 | Msa1072960:CDS |
| ACAACGAAGCCTCCTGTGGA+AGG | 0.594540 | 7_2:-70256776 | Msa1072960:CDS |
| GTGTGTCATTCATTGGGAGG+AGG | 0.596369 | 7_2:-70256437 | Msa1072960:CDS |
| ACTGCTTCTGCCATGTTCAG+GGG | 0.596534 | 7_2:-70255117 | Msa1072960:CDS |
| GGACAATGCGGGAACCAGAT+CGG | 0.597537 | 7_2:-70256900 | Msa1072960:CDS |
| TTTGCTCCTCTCACATCCCG+TGG | 0.599145 | 7_2:-70255243 | Msa1072960:CDS |
| TTGATCTCAGCAACCATGAG+TGG | 0.599833 | 7_2:-70255369 | Msa1072960:CDS |
| CATCAATCTCCACCGTCCAA+AGG | 0.599873 | 7_2:-70257204 | Msa1072960:five_prime_UTR |
| TCATGGTTGCTGAGATCAAG+TGG | 0.601262 | 7_2:+70255373 | None:intergenic |
| GCGTGGAACAAACCTTCCAC+AGG | 0.601663 | 7_2:+70256764 | None:intergenic |
| TAAGATGAGCACCAAAGAGG+TGG | 0.605176 | 7_2:-70255094 | Msa1072960:CDS |
| GGTTGAGTTACCAATAAAGG+TGG | 0.607360 | 7_2:+70254957 | None:intergenic |
| CAATTTGGACAACAGAGCGA+AGG | 0.608406 | 7_2:-70254556 | Msa1072960:three_prime_UTR |
| AATTCAGGAAATGTTTAGGA+GGG | 0.609115 | 7_2:-70254932 | Msa1072960:CDS |
| ACATACAGAAACAAATAGAT+GGG | 0.609432 | 7_2:+70254494 | None:intergenic |
| ACAATGGACAGTGTTCGCAC+TGG | 0.609664 | 7_2:-70256714 | Msa1072960:CDS |
| ACAGCAAGTCACTCCACTCA+TGG | 0.610966 | 7_2:+70255356 | None:intergenic |
| GCTCATCTTACCCCTGAACA+TGG | 0.612907 | 7_2:+70255107 | None:intergenic |
| AGCGAGATAGAGTGAAAATG+TGG | 0.613930 | 7_2:+70257121 | None:intergenic |
| TGGATGGGAAAATGGTTGAG+CGG | 0.615130 | 7_2:+70257089 | None:intergenic |
| AGGCTCCAAGTCCATGAGGA+TGG | 0.616165 | 7_2:+70256740 | None:intergenic |
| TCAAAACAAGCTAATTACAA+AGG | 0.616303 | 7_2:+70254621 | None:intergenic |
| AGAACTCACCCAGCAGATGT+GGG | 0.617381 | 7_2:-70255190 | Msa1072960:CDS |
| TCACTTCTCATCACAAAGCG+AGG | 0.619680 | 7_2:-70257161 | Msa1072960:five_prime_UTR |
| TGTGCTGCTGATCCTAGGCA+TGG | 0.620259 | 7_2:-70255150 | Msa1072960:CDS |
| GGATGGAAACCTTTGGACGG+TGG | 0.629305 | 7_2:+70257195 | None:intergenic |
| GCGAAAGGACATTATACTGA+AGG | 0.631149 | 7_2:-70256624 | Msa1072960:CDS |
| GGACGGAAGATCTGACCGTA+AGG | 0.631185 | 7_2:+70256690 | None:intergenic |
| GTTTGTGACATTGCTCCTCG+AGG | 0.633730 | 7_2:-70254994 | Msa1072960:CDS |
| CACTTCTCATCACAAAGCGA+GGG | 0.636087 | 7_2:-70257160 | Msa1072960:five_prime_UTR |
| TACTACAACGAAGCCTCCTG+TGG | 0.636492 | 7_2:-70256780 | Msa1072960:CDS |
| AAGTCCATGAGGATGGCGCG+TGG | 0.636612 | 7_2:+70256747 | None:intergenic |
| AATTTGGACAACAGAGCGAA+GGG | 0.638625 | 7_2:-70254555 | Msa1072960:three_prime_UTR |
| TGAGAGCCACGGGATGTGAG+AGG | 0.640513 | 7_2:+70255237 | None:intergenic |
| TGGAACAAACCTTCCACAGG+AGG | 0.640659 | 7_2:+70256767 | None:intergenic |
| CTTTGTGATGAGAAGTGATG+TGG | 0.645586 | 7_2:+70257166 | None:intergenic |
| GTGTATGGTTCTTGATAATG+AGG | 0.647671 | 7_2:-70256246 | Msa1072960:CDS |
| AGGAGAATATGAGGACGAAG+AGG | 0.649551 | 7_2:-70254752 | Msa1072960:CDS |
| CATGTTCAAGGAGGACAATG+CGG | 0.653004 | 7_2:-70256912 | Msa1072960:CDS |
| GAGGCCATGGAGAGACCTCG+AGG | 0.661607 | 7_2:+70254979 | None:intergenic |
| GATCAGAGTTGAGTTGACCA+GGG | 0.663540 | 7_2:+70255325 | None:intergenic |
| GTTGGATGGAAACCTTTGGA+CGG | 0.663569 | 7_2:+70257192 | None:intergenic |
| CCATGAAGAAGTGCAGACGA+GGG | 0.668664 | 7_2:+70255271 | None:intergenic |
| GGGTAAGATGAGCACCAAAG+AGG | 0.672077 | 7_2:-70255097 | Msa1072960:CDS |
| CGAAGACGAAGTTATCAGGA+CGG | 0.676420 | 7_2:+70256673 | None:intergenic |
| GAAATTCTTCATGTTCAAGG+AGG | 0.679770 | 7_2:-70256921 | Msa1072960:CDS |
| GTTCTGGAACAGTCAATGCA+CGG | 0.686386 | 7_2:+70255208 | None:intergenic |
| TACCAGGCTCCAAGTCCATG+AGG | 0.693763 | 7_2:+70256736 | None:intergenic |
| GATCCAACCGGAAGATACGT+CGG | 0.698972 | 7_2:-70256837 | Msa1072960:CDS |
| ATCACCAATAGATATATGTG+CGG | 0.704907 | 7_2:+70254317 | None:intergenic |
| TGAACATGGCAGAAGCAGTG+AGG | 0.715259 | 7_2:+70255121 | None:intergenic |
| CATTTCGTCATTCAACACAA+GGG | 0.727551 | 7_2:-70257299 | Msa1072960:five_prime_UTR |
| ACTGCTGGTACTCAGACACG+AGG | 0.785475 | 7_2:+70254800 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTATTTAAATTTTGATTT+GGG | + | chr7_2:70254456-70254475 | None:intergenic | 10.0% |
| !!! | TGATTATTTAAATTTTGATT+TGG | + | chr7_2:70254457-70254476 | None:intergenic | 10.0% |
| !! | AAAACATAACAACATTAAAA+TGG | + | chr7_2:70255857-70255876 | None:intergenic | 15.0% |
| !! | AAATTAGTCAGATTAAATTT+AGG | + | chr7_2:70256179-70256198 | None:intergenic | 15.0% |
| !!! | ATAAAGAATCAAGAATGTTT+TGG | + | chr7_2:70254305-70254324 | None:intergenic | 20.0% |
| !! | AAAATGTGGACAAAATATAT+TGG | + | chr7_2:70254552-70254571 | None:intergenic | 20.0% |
| !!! | TGTGATTTTGTGATTTTTTT+AGG | - | chr7_2:70255217-70255236 | Msa1072960:CDS | 20.0% |
| !!! | GTGATTTTGTGATTTTTTTA+GGG | - | chr7_2:70255218-70255237 | Msa1072960:CDS | 20.0% |
| !! | TTAAACTTATATTTACCCTT+TGG | - | chr7_2:70255972-70255991 | Msa1072960:intron | 20.0% |
| !! | TAAACTTATATTTACCCTTT+GGG | - | chr7_2:70255973-70255992 | Msa1072960:intron | 20.0% |
| !!! | ATGTTAATGATTCATTTTTC+TGG | - | chr7_2:70256081-70256100 | Msa1072960:intron | 20.0% |
| !! | AATTTGATTGTTCACAAATT+GGG | - | chr7_2:70256213-70256232 | Msa1072960:CDS | 20.0% |
| ! | GTTATTGAAGCAAAGAAATT+AGG | + | chr7_2:70254425-70254444 | None:intergenic | 25.0% |
| ! | TGAAAATCTTGATTCTGTTA+TGG | - | chr7_2:70255174-70255193 | Msa1072960:CDS | 25.0% |
| !! | AATTAGTTATTGGTTAGTTG+TGG | - | chr7_2:70255617-70255636 | Msa1072960:intron | 25.0% |
| ! | TTGTGGTAATTATTGAATAG+TGG | - | chr7_2:70255634-70255653 | Msa1072960:intron | 25.0% |
| !!! | GTCAGATTAGTTTTCTATTT+TGG | - | chr7_2:70255728-70255747 | Msa1072960:intron | 25.0% |
| ! | TTTAGAAATTAGATCCCAAA+GGG | + | chr7_2:70255990-70256009 | None:intergenic | 25.0% |
| ! | ATTTAGAAATTAGATCCCAA+AGG | + | chr7_2:70255991-70256010 | None:intergenic | 25.0% |
| !!! | TCATTTTTCTGGTTCAATTA+TGG | - | chr7_2:70256092-70256111 | Msa1072960:intron | 25.0% |
| !! | TTTTCTCATTGAACACTTTT+CGG | - | chr7_2:70256141-70256160 | Msa1072960:intron | 25.0% |
| ! | GAATTTGATTGTTCACAAAT+TGG | - | chr7_2:70256212-70256231 | Msa1072960:CDS | 25.0% |
| ! | CACTTGATTTAACATTGTTT+GGG | + | chr7_2:70256671-70256690 | None:intergenic | 25.0% |
| ! | ACACTTGATTTAACATTGTT+TGG | + | chr7_2:70256672-70256691 | None:intergenic | 25.0% |
| ! | TCAAAACAAGCTAATTACAA+AGG | + | chr7_2:70257066-70257085 | None:intergenic | 25.0% |
| !!! | TTTGTAATTAGCTTGTTTTG+AGG | - | chr7_2:70257065-70257084 | Msa1072960:five_prime_UTR | 25.0% |
| !!! | TTGTAATTAGCTTGTTTTGA+GGG | - | chr7_2:70257066-70257085 | Msa1072960:five_prime_UTR | 25.0% |
| ! | ACATACAGAAACAAATAGAT+GGG | + | chr7_2:70257193-70257212 | None:intergenic | 25.0% |
| ! | AACATACAGAAACAAATAGA+TGG | + | chr7_2:70257194-70257213 | None:intergenic | 25.0% |
| !!! | ATCTATTTGTTTCTGTATGT+TGG | - | chr7_2:70257193-70257212 | Msa1072960:five_prime_UTR | 25.0% |
| !! | TTGTTTCTTATATCTGCTAT+TGG | - | chr7_2:70257225-70257244 | Msa1072960:five_prime_UTR | 25.0% |
| ! | ATAGGAATGACAAACTATTA+AGG | + | chr7_2:70257260-70257279 | None:intergenic | 25.0% |
| ! | ATGTGAAAAAAGTAATGCAT+AGG | + | chr7_2:70257278-70257297 | None:intergenic | 25.0% |
| !!! | ATGCATTACTTTTTTCACAT+TGG | - | chr7_2:70257278-70257297 | Msa1072960:five_prime_UTR | 25.0% |
| ! | TTTTTATTGAAGAGGTGAGA+GGG | + | chr7_2:70254357-70254376 | None:intergenic | 30.0% |
| ! | ATTTTTATTGAAGAGGTGAG+AGG | + | chr7_2:70254358-70254377 | None:intergenic | 30.0% |
| CACCTCTTCAATAAAAATGA+AGG | - | chr7_2:70254360-70254379 | Msa1072960:three_prime_UTR | 30.0% | |
| !! | GTCCTTCATTTTTATTGAAG+AGG | + | chr7_2:70254365-70254384 | None:intergenic | 30.0% |
| TGAAGCAAAGAAATTAGGAT+GGG | + | chr7_2:70254420-70254439 | None:intergenic | 30.0% | |
| TTGAAGCAAAGAAATTAGGA+TGG | + | chr7_2:70254421-70254440 | None:intergenic | 30.0% | |
| GAACAATTTGAACACTGAAA+CGG | + | chr7_2:70254724-70254743 | None:intergenic | 30.0% | |
| AGAGAAATTCTTCATGTTCA+AGG | - | chr7_2:70254760-70254779 | Msa1072960:CDS | 30.0% | |
| AAATCTTGATTCTGTTATGG+CGG | - | chr7_2:70255177-70255196 | Msa1072960:CDS | 30.0% | |
| !!! | TGTGATTTTTTTAGGGTTTC+AGG | - | chr7_2:70255225-70255244 | Msa1072960:CDS | 30.0% |
| ACAGAAAGAGTAGCATTATA+AGG | + | chr7_2:70255391-70255410 | None:intergenic | 30.0% | |
| ! | TTTTTCGTTGTTCATCACTA+GGG | - | chr7_2:70255545-70255564 | Msa1072960:intron | 30.0% |
| TTTGATGCGCAATTAGTTAT+TGG | - | chr7_2:70255607-70255626 | Msa1072960:intron | 30.0% | |
| !! | AAGCATTGAACAATTGCAAT+AGG | + | chr7_2:70256015-70256034 | None:intergenic | 30.0% |
| TGGTGATTCTTAACTACTAA+TGG | - | chr7_2:70256112-70256131 | Msa1072960:intron | 30.0% | |
| ! | CAATCACACATTTTCAGTAA+TGG | + | chr7_2:70256268-70256287 | None:intergenic | 30.0% |
| AATTCAGGAAATGTTTAGGA+GGG | - | chr7_2:70256752-70256771 | Msa1072960:CDS | 30.0% | |
| AGCAATTTACTGCTATGTTT+AGG | - | chr7_2:70256781-70256800 | Msa1072960:CDS | 30.0% | |
| AATTTACTGCTATGTTTAGG+AGG | - | chr7_2:70256784-70256803 | Msa1072960:CDS | 30.0% | |
| AAGCTAATTACAAAGGATAG+AGG | + | chr7_2:70257059-70257078 | None:intergenic | 30.0% | |
| TAAACCGCACATATATCTAT+TGG | - | chr7_2:70257363-70257382 | Msa1072960:five_prime_UTR | 30.0% | |
| ATCACCAATAGATATATGTG+CGG | + | chr7_2:70257370-70257389 | None:intergenic | 30.0% | |
| !! | AATCAAGAATGTTTTGGACG+TGG | + | chr7_2:70254299-70254318 | None:intergenic | 35.0% |
| ! | TTTTATTGAAGAGGTGAGAG+GGG | + | chr7_2:70254356-70254375 | None:intergenic | 35.0% |
| CATTTCGTCATTCAACACAA+GGG | - | chr7_2:70254385-70254404 | Msa1072960:three_prime_UTR | 35.0% | |
| GAAATTCTTCATGTTCAAGG+AGG | - | chr7_2:70254763-70254782 | Msa1072960:CDS | 35.0% | |
| GAGAATTGTGATTGTCTTCA+AGG | - | chr7_2:70255129-70255148 | Msa1072960:CDS | 35.0% | |
| ! | TTTCAGGTGTGTCATTCATT+GGG | - | chr7_2:70255241-70255260 | Msa1072960:CDS | 35.0% |
| ! | GTTGATTTCGAAGATTAGAG+AGG | - | chr7_2:70255294-70255313 | Msa1072960:CDS | 35.0% |
| TTAGAGAGGAATATCCTGAT+AGG | - | chr7_2:70255308-70255327 | Msa1072960:CDS | 35.0% | |
| ! | TAGGATGATGTTGACGTTTT+CGG | - | chr7_2:70255327-70255346 | Msa1072960:CDS | 35.0% |
| ACAACAGTATCAGAAACCTT+CGG | + | chr7_2:70255364-70255383 | None:intergenic | 35.0% | |
| TACTCTTTCTGTTCATCAGT+TGG | - | chr7_2:70255399-70255418 | Msa1072960:intron | 35.0% | |
| AGAAAATGCTGATGAGTGTA+TGG | - | chr7_2:70255423-70255442 | Msa1072960:intron | 35.0% | |
| !! | GTGTATGGTTCTTGATAATG+AGG | - | chr7_2:70255438-70255457 | Msa1072960:intron | 35.0% |
| AGAGAAAAATACTCACAGCT+AGG | + | chr7_2:70255505-70255524 | None:intergenic | 35.0% | |
| !! | CTTTTTCGTTGTTCATCACT+AGG | - | chr7_2:70255544-70255563 | Msa1072960:intron | 35.0% |
| ! | TGACTGATTCTAGATGTTCA+AGG | - | chr7_2:70255806-70255825 | Msa1072960:intron | 35.0% |
| ATGTACTCAGTTTACTGATC+TGG | - | chr7_2:70255900-70255919 | Msa1072960:intron | 35.0% | |
| ATGAATGCATCATGTGACTA+TGG | - | chr7_2:70256051-70256070 | Msa1072960:intron | 35.0% | |
| TGAGGTTGAGTTACCAATAA+AGG | + | chr7_2:70256733-70256752 | None:intergenic | 35.0% | |
| CCTAAACATTTCCTGAATTG+AGG | + | chr7_2:70256751-70256770 | None:intergenic | 35.0% | |
| CCTCAATTCAGGAAATGTTT+AGG | - | chr7_2:70256748-70256767 | Msa1072960:CDS | 35.0% | |
| CAATTCAGGAAATGTTTAGG+AGG | - | chr7_2:70256751-70256770 | Msa1072960:CDS | 35.0% | |
| TGATGAAGAAGGAGAATATG+AGG | - | chr7_2:70256923-70256942 | Msa1072960:CDS | 35.0% | |
| CCTTGTGTTGAATGACGAAA+TGG | + | chr7_2:70254387-70254406 | None:intergenic | 40.0% | |
| CCATTTCGTCATTCAACACA+AGG | - | chr7_2:70254384-70254403 | Msa1072960:three_prime_UTR | 40.0% | |
| GCAAAGAAATTAGGATGGGA+CGG | + | chr7_2:70254416-70254435 | None:intergenic | 40.0% | |
| CTTTGTGATGAGAAGTGATG+TGG | + | chr7_2:70254521-70254540 | None:intergenic | 40.0% | |
| AGCGAGATAGAGTGAAAATG+TGG | + | chr7_2:70254566-70254585 | None:intergenic | 40.0% | |
| CTCATCTTCATCACTATCAC+AGG | - | chr7_2:70254635-70254654 | Msa1072960:three_prime_UTR | 40.0% | |
| ! | ACCAGATCGGTTCAAAATTC+TGG | - | chr7_2:70254797-70254816 | Msa1072960:CDS | 40.0% |
| ! | CCAGATCGGTTCAAAATTCT+GGG | - | chr7_2:70254798-70254817 | Msa1072960:CDS | 40.0% |
| GCGAAAGGACATTATACTGA+AGG | - | chr7_2:70255060-70255079 | Msa1072960:CDS | 40.0% | |
| TCTCGATGTTGTTCGTAAAG+AGG | - | chr7_2:70255104-70255123 | Msa1072960:CDS | 40.0% | |
| ! | GTTTCAGGTGTGTCATTCAT+TGG | - | chr7_2:70255240-70255259 | Msa1072960:CDS | 40.0% |
| AACGTCAACATCATCCTATC+AGG | + | chr7_2:70255325-70255344 | None:intergenic | 40.0% | |
| CGCTTTATGATATCTGCTTC+AGG | - | chr7_2:70255461-70255480 | Msa1072960:intron | 40.0% | |
| AGTTTACTGATCTGGTCAGT+GGG | - | chr7_2:70255908-70255927 | Msa1072960:intron | 40.0% | |
| AGTAGGAAGAGTTCTTGTTC+TGG | + | chr7_2:70256635-70256654 | None:intergenic | 40.0% | |
| ACTCTTCCTACTTTGTTGAG+TGG | - | chr7_2:70256643-70256662 | Msa1072960:CDS | 40.0% | |
| TGAGTTACCAATAAAGGTGG+AGG | + | chr7_2:70256727-70256746 | None:intergenic | 40.0% | |
| GGTTGAGTTACCAATAAAGG+TGG | + | chr7_2:70256730-70256749 | None:intergenic | 40.0% | |
| TGGTAACTCAACCTCAATTC+AGG | - | chr7_2:70256737-70256756 | Msa1072960:CDS | 40.0% | |
| TACTGCTATGTTTAGGAGGA+AGG | - | chr7_2:70256788-70256807 | Msa1072960:CDS | 40.0% | |
| ! | TTTTAGTAACGAGCTGGATG+TGG | - | chr7_2:70257090-70257109 | Msa1072960:five_prime_UTR | 40.0% |
| AGAGAATGGAGATCCCAATT+TGG | - | chr7_2:70257113-70257132 | Msa1072960:five_prime_UTR | 40.0% | |
| TTCGCTCTGTTGTCCAAATT+GGG | + | chr7_2:70257129-70257148 | None:intergenic | 40.0% | |
| AATTTGGACAACAGAGCGAA+GGG | - | chr7_2:70257129-70257148 | Msa1072960:five_prime_UTR | 40.0% | |
| !! | GGTAGTGGGAATTTAGTACA+TGG | - | chr7_2:70257150-70257169 | Msa1072960:five_prime_UTR | 40.0% |
| ATGTGCGGTTTAACGTTGTT+CGG | + | chr7_2:70257355-70257374 | None:intergenic | 40.0% | |
| GAGGGGATGTATGTACGAAA+AGG | + | chr7_2:70254339-70254358 | None:intergenic | 45.0% | |
| GTTGGATGGAAACCTTTGGA+CGG | + | chr7_2:70254495-70254514 | None:intergenic | 45.0% | |
| GATCGTTGGATGGAAACCTT+TGG | + | chr7_2:70254499-70254518 | None:intergenic | 45.0% | |
| AAGTGATGTGGATCGTTGGA+TGG | + | chr7_2:70254509-70254528 | None:intergenic | 45.0% | |
| TGAGAAGTGATGTGGATCGT+TGG | + | chr7_2:70254513-70254532 | None:intergenic | 45.0% | |
| TCACTTCTCATCACAAAGCG+AGG | - | chr7_2:70254523-70254542 | Msa1072960:three_prime_UTR | 45.0% | |
| CACTTCTCATCACAAAGCGA+GGG | - | chr7_2:70254524-70254543 | Msa1072960:three_prime_UTR | 45.0% | |
| TGGATGGGAAAATGGTTGAG+CGG | + | chr7_2:70254598-70254617 | None:intergenic | 45.0% | |
| GACGAGTTTGGATGGGAAAA+TGG | + | chr7_2:70254606-70254625 | None:intergenic | 45.0% | |
| AGAGAGTGACGAGTTTGGAT+GGG | + | chr7_2:70254613-70254632 | None:intergenic | 45.0% | |
| CATGTTCAAGGAGGACAATG+CGG | - | chr7_2:70254772-70254791 | Msa1072960:CDS | 45.0% | |
| ATGTTCAAGGAGGACAATGC+GGG | - | chr7_2:70254773-70254792 | Msa1072960:CDS | 45.0% | |
| ! | CCCAGAATTTTGAACCGATC+TGG | + | chr7_2:70254801-70254820 | None:intergenic | 45.0% |
| TGAGTTTCCGACGTATCTTC+CGG | + | chr7_2:70254857-70254876 | None:intergenic | 45.0% | |
| CGAAGACGAAGTTATCAGGA+CGG | + | chr7_2:70255014-70255033 | None:intergenic | 45.0% | |
| CGTCCTGATAACTTCGTCTT+CGG | - | chr7_2:70255012-70255031 | Msa1072960:CDS | 45.0% | |
| TGACCGAAGACGAAGTTATC+AGG | + | chr7_2:70255018-70255037 | None:intergenic | 45.0% | |
| TCCTTTCGCCCAATTGTTAC+CGG | + | chr7_2:70255049-70255068 | None:intergenic | 45.0% | |
| GTATCAGAAACCTTCGGTGA+AGG | + | chr7_2:70255358-70255377 | None:intergenic | 45.0% | |
| CAGTTTACTGATCTGGTCAG+TGG | - | chr7_2:70255907-70255926 | Msa1072960:intron | 45.0% | |
| TGGCAAACAGCATCAACTAC+AGG | + | chr7_2:70256248-70256267 | None:intergenic | 45.0% | |
| ! | GTGTGATTGTTTGCTGCAGT+TGG | - | chr7_2:70256279-70256298 | Msa1072960:CDS | 45.0% |
| TCATGGTTGCTGAGATCAAG+TGG | + | chr7_2:70256314-70256333 | None:intergenic | 45.0% | |
| TTGATCTCAGCAACCATGAG+TGG | - | chr7_2:70256315-70256334 | Msa1072960:CDS | 45.0% | |
| !! | GATCAGAGTTGAGTTGACCA+GGG | + | chr7_2:70256362-70256381 | None:intergenic | 45.0% |
| !! | AGATCAGAGTTGAGTTGACC+AGG | + | chr7_2:70256363-70256382 | None:intergenic | 45.0% |
| GTCAACTCAACTCTGATCTC+CGG | - | chr7_2:70256364-70256383 | Msa1072960:CDS | 45.0% | |
| TGAGATTCACAGCCAGTTTC+CGG | + | chr7_2:70256386-70256405 | None:intergenic | 45.0% | |
| !! | GTTCTGGAACAGTCAATGCA+CGG | + | chr7_2:70256479-70256498 | None:intergenic | 45.0% |
| AGCAGCACACATCATGTTCT+TGG | + | chr7_2:70256523-70256542 | None:intergenic | 45.0% | |
| TAAGATGAGCACCAAAGAGG+TGG | - | chr7_2:70256590-70256609 | Msa1072960:CDS | 45.0% | |
| CATTTGCTCATCCACCTCTT+TGG | + | chr7_2:70256604-70256623 | None:intergenic | 45.0% | |
| TGGGATCCACTCAACAAAGT+AGG | + | chr7_2:70256652-70256671 | None:intergenic | 45.0% | |
| ! | GCTTTCTTGCATTGGTACAC+TGG | - | chr7_2:70256810-70256829 | Msa1072960:CDS | 45.0% |
| ! | TTGCATTGGTACACTGGTGA+AGG | - | chr7_2:70256816-70256835 | Msa1072960:CDS | 45.0% |
| TTCTCCTTCTTCATCAGCAG+TGG | + | chr7_2:70256919-70256938 | None:intergenic | 45.0% | |
| AGGAGAATATGAGGACGAAG+AGG | - | chr7_2:70256932-70256951 | Msa1072960:exon | 45.0% | |
| !! | GAGGGATTTTAGTAACGAGC+TGG | - | chr7_2:70257084-70257103 | Msa1072960:five_prime_UTR | 45.0% |
| CTTCGCTCTGTTGTCCAAAT+TGG | + | chr7_2:70257130-70257149 | None:intergenic | 45.0% | |
| CAATTTGGACAACAGAGCGA+AGG | - | chr7_2:70257128-70257147 | Msa1072960:five_prime_UTR | 45.0% | |
| CATCAATCTCCACCGTCCAA+AGG | - | chr7_2:70254480-70254499 | Msa1072960:three_prime_UTR | 50.0% | |
| GGATGGGAAAATGGTTGAGC+GGG | + | chr7_2:70254597-70254616 | None:intergenic | 50.0% | |
| GAGAGAGTGACGAGTTTGGA+TGG | + | chr7_2:70254614-70254633 | None:intergenic | 50.0% | |
| GAGTGAGAGAGTGACGAGTT+TGG | + | chr7_2:70254618-70254637 | None:intergenic | 50.0% | |
| ! | GAAGTAGTTTGCGACGAGCA+CGG | - | chr7_2:70254820-70254839 | Msa1072960:CDS | 50.0% |
| GATCCAACCGGAAGATACGT+CGG | - | chr7_2:70254847-70254866 | Msa1072960:CDS | 50.0% | |
| TTTCCGACGTATCTTCCGGT+TGG | + | chr7_2:70254853-70254872 | None:intergenic | 50.0% | |
| TACTACAACGAAGCCTCCTG+TGG | - | chr7_2:70254904-70254923 | Msa1072960:CDS | 50.0% | |
| TGGAACAAACCTTCCACAGG+AGG | + | chr7_2:70254920-70254939 | None:intergenic | 50.0% | |
| CGAACACTGTCCATTGTACC+AGG | + | chr7_2:70254967-70254986 | None:intergenic | 50.0% | |
| ACAATGGACAGTGTTCGCAC+TGG | - | chr7_2:70254970-70254989 | Msa1072960:CDS | 50.0% | |
| ! | AGTGTTCGCACTGGTCCTTA+CGG | - | chr7_2:70254979-70254998 | Msa1072960:CDS | 50.0% |
| AACTTCGTCTTCGGTCAGTC+CGG | - | chr7_2:70255021-70255040 | Msa1072960:CDS | 50.0% | |
| ! | CAGGTGTGTCATTCATTGGG+AGG | - | chr7_2:70255244-70255263 | Msa1072960:CDS | 50.0% |
| ! | GTGTGTCATTCATTGGGAGG+AGG | - | chr7_2:70255247-70255266 | Msa1072960:CDS | 50.0% |
| CATTCATTGGGAGGAGGAAC+TGG | - | chr7_2:70255253-70255272 | Msa1072960:CDS | 50.0% | |
| AGGAGGAACTGGATCTGGAA+TGG | - | chr7_2:70255264-70255283 | Msa1072960:CDS | 50.0% | |
| ! | GGAGGAACTGGATCTGGAAT+GGG | - | chr7_2:70255265-70255284 | Msa1072960:CDS | 50.0% |
| !! | TTCGGTGTTTCCTTCACCGA+AGG | - | chr7_2:70255345-70255364 | Msa1072960:CDS | 50.0% |
| ACAGCAAGTCACTCCACTCA+TGG | + | chr7_2:70256331-70256350 | None:intergenic | 50.0% | |
| !! | ACTTGCTGTCTTCGTTTCCC+TGG | - | chr7_2:70256342-70256361 | Msa1072960:CDS | 50.0% |
| CAACTCTGATCTCCGGAAAC+TGG | - | chr7_2:70256371-70256390 | Msa1072960:CDS | 50.0% | |
| ! | AGAAGTGCAGACGAGGGAAT+GGG | + | chr7_2:70256410-70256429 | None:intergenic | 50.0% |
| ! | AAGAAGTGCAGACGAGGGAA+TGG | + | chr7_2:70256411-70256430 | None:intergenic | 50.0% |
| ! | CCATGAAGAAGTGCAGACGA+GGG | + | chr7_2:70256416-70256435 | None:intergenic | 50.0% |
| ! | ACCATGAAGAAGTGCAGACG+AGG | + | chr7_2:70256417-70256436 | None:intergenic | 50.0% |
| CGTCTGCACTTCTTCATGGT+CGG | - | chr7_2:70256417-70256436 | Msa1072960:CDS | 50.0% | |
| AGAACTCACCCAGCAGATGT+GGG | - | chr7_2:70256494-70256513 | Msa1072960:intron | 50.0% | |
| CTTGGAATCCCACATCTGCT+GGG | + | chr7_2:70256505-70256524 | None:intergenic | 50.0% | |
| TCTTGGAATCCCACATCTGC+TGG | + | chr7_2:70256506-70256525 | None:intergenic | 50.0% | |
| ! | TGATGTGTGCTGCTGATCCT+AGG | - | chr7_2:70256529-70256548 | Msa1072960:intron | 50.0% |
| TGAACATGGCAGAAGCAGTG+AGG | + | chr7_2:70256566-70256585 | None:intergenic | 50.0% | |
| TCACTGCTTCTGCCATGTTC+AGG | - | chr7_2:70256565-70256584 | Msa1072960:CDS | 50.0% | |
| CACTGCTTCTGCCATGTTCA+GGG | - | chr7_2:70256566-70256585 | Msa1072960:CDS | 50.0% | |
| ACTGCTTCTGCCATGTTCAG+GGG | - | chr7_2:70256567-70256586 | Msa1072960:CDS | 50.0% | |
| GCTCATCTTACCCCTGAACA+TGG | + | chr7_2:70256580-70256599 | None:intergenic | 50.0% | |
| GGGTAAGATGAGCACCAAAG+AGG | - | chr7_2:70256587-70256606 | Msa1072960:CDS | 50.0% | |
| GTTTGTGACATTGCTCCTCG+AGG | - | chr7_2:70256690-70256709 | Msa1072960:CDS | 50.0% | |
| TCCATGGCCTCCACCTTTAT+TGG | - | chr7_2:70256717-70256736 | Msa1072960:CDS | 50.0% | |
| ACCAATAAAGGTGGAGGCCA+TGG | + | chr7_2:70256721-70256740 | None:intergenic | 50.0% | |
| GGAGGAAGGCTTTCTTGCAT+TGG | - | chr7_2:70256802-70256821 | Msa1072960:CDS | 50.0% | |
| TTGGTACACTGGTGAAGGCA+TGG | - | chr7_2:70256821-70256840 | Msa1072960:CDS | 50.0% | |
| ! | TGGTGAAGGCATGGATGAGA+TGG | - | chr7_2:70256830-70256849 | Msa1072960:CDS | 50.0% |
| GATGCCACTGCTGATGAAGA+AGG | - | chr7_2:70256912-70256931 | Msa1072960:CDS | 50.0% | |
| ATATGAGGACGAAGAGGACG+AGG | - | chr7_2:70256938-70256957 | Msa1072960:intron | 50.0% | |
| ACAACAGAGCGAAGGGTAGT+GGG | - | chr7_2:70257136-70257155 | Msa1072960:five_prime_UTR | 50.0% | |
| GGATGGAAACCTTTGGACGG+TGG | + | chr7_2:70254492-70254511 | None:intergenic | 55.0% | |
| GGACAATGCGGGAACCAGAT+CGG | - | chr7_2:70254784-70254803 | Msa1072960:CDS | 55.0% | |
| GAGCACGGCATAGATCCAAC+CGG | - | chr7_2:70254835-70254854 | Msa1072960:CDS | 55.0% | |
| ACAACGAAGCCTCCTGTGGA+AGG | - | chr7_2:70254908-70254927 | Msa1072960:CDS | 55.0% | |
| GCGTGGAACAAACCTTCCAC+AGG | + | chr7_2:70254923-70254942 | None:intergenic | 55.0% | |
| AGGCTCCAAGTCCATGAGGA+TGG | + | chr7_2:70254947-70254966 | None:intergenic | 55.0% | |
| ATCCTCATGGACTTGGAGCC+TGG | - | chr7_2:70254946-70254965 | Msa1072960:CDS | 55.0% | |
| TACCAGGCTCCAAGTCCATG+AGG | + | chr7_2:70254951-70254970 | None:intergenic | 55.0% | |
| GGACTTGGAGCCTGGTACAA+TGG | - | chr7_2:70254954-70254973 | Msa1072960:CDS | 55.0% | |
| GGACGGAAGATCTGACCGTA+AGG | + | chr7_2:70254997-70255016 | None:intergenic | 55.0% | |
| !! | AGTCCGGTGCCGGTAACAAT+TGG | - | chr7_2:70255037-70255056 | Msa1072960:CDS | 55.0% |
| !! | GTCCGGTGCCGGTAACAATT+GGG | - | chr7_2:70255038-70255057 | Msa1072960:CDS | 55.0% |
| GCCGGTAACAATTGGGCGAA+AGG | - | chr7_2:70255045-70255064 | Msa1072960:CDS | 55.0% | |
| TTGGGAGGAGGAACTGGATC+TGG | - | chr7_2:70255259-70255278 | Msa1072960:CDS | 55.0% | |
| CCCTCGTCTGCACTTCTTCA+TGG | - | chr7_2:70256413-70256432 | Msa1072960:CDS | 55.0% | |
| TTTGCTCCTCTCACATCCCG+TGG | - | chr7_2:70256441-70256460 | Msa1072960:CDS | 55.0% | |
| ACGGTATTGCTGAGAGCCAC+GGG | + | chr7_2:70256460-70256479 | None:intergenic | 55.0% | |
| CACGGTATTGCTGAGAGCCA+CGG | + | chr7_2:70256461-70256480 | None:intergenic | 55.0% | |
| CACATCTGCTGGGTGAGTTC+TGG | + | chr7_2:70256495-70256514 | None:intergenic | 55.0% | |
| CAGAACTCACCCAGCAGATG+TGG | - | chr7_2:70256493-70256512 | Msa1072960:intron | 55.0% | |
| ! | TGTGCTGCTGATCCTAGGCA+TGG | - | chr7_2:70256534-70256553 | Msa1072960:intron | 55.0% |
| ACTGCTGGTACTCAGACACG+AGG | + | chr7_2:70256887-70256906 | None:intergenic | 55.0% | |
| GTCTGAGTACCAGCAGTACC+AGG | - | chr7_2:70256890-70256909 | Msa1072960:CDS | 55.0% | |
| CTTCATCAGCAGTGGCATCC+TGG | + | chr7_2:70256911-70256930 | None:intergenic | 55.0% | |
| CGAGCTGGATGTGGAGAGAA+TGG | - | chr7_2:70257099-70257118 | Msa1072960:five_prime_UTR | 55.0% | |
| GACAACAGAGCGAAGGGTAG+TGG | - | chr7_2:70257135-70257154 | Msa1072960:five_prime_UTR | 55.0% | |
| TGTTCCACGCGCCATCCTCA+TGG | - | chr7_2:70254933-70254952 | Msa1072960:CDS | 60.0% | |
| AAGTCCATGAGGATGGCGCG+TGG | + | chr7_2:70254940-70254959 | None:intergenic | 60.0% | |
| ACGCGCCATCCTCATGGACT+TGG | - | chr7_2:70254939-70254958 | Msa1072960:CDS | 60.0% | |
| CGCCCAATTGTTACCGGCAC+CGG | + | chr7_2:70255043-70255062 | None:intergenic | 60.0% | |
| TGAGAGCCACGGGATGTGAG+AGG | + | chr7_2:70256450-70256469 | None:intergenic | 60.0% | |
| GTGAGGTAGCGACCATGCCT+AGG | + | chr7_2:70256549-70256568 | None:intergenic | 60.0% | |
| TGCTCCTCGAGGTCTCTCCA+TGG | - | chr7_2:70256701-70256720 | Msa1072960:CDS | 60.0% | |
| CAGTGGCATCCTGGTACTGC+TGG | + | chr7_2:70256902-70256921 | None:intergenic | 60.0% | |
| GTCTTCGGTCAGTCCGGTGC+CGG | - | chr7_2:70255027-70255046 | Msa1072960:CDS | 65.0% | |
| GAGGCCATGGAGAGACCTCG+AGG | + | chr7_2:70256708-70256727 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 70254286 | 70257420 | 70254286 | ID=Msa1072960;Name=Msa1072960 |
| chr7_2 | mRNA | 70254286 | 70257420 | 70254286 | ID=Msa1072960-mRNA-1;Parent=Msa1072960;Name=Msa1072960-mRNA-1;_AED=0.11;_eAED=0.11;_QI=375|1|1|1|0.66|0.5|4|437|449 |
| chr7_2 | exon | 70254286 | 70255408 | 70254286 | ID=Msa1072960-mRNA-1:exon:15760;Parent=Msa1072960-mRNA-1 |
| chr7_2 | exon | 70256198 | 70256467 | 70256198 | ID=Msa1072960-mRNA-1:exon:15759;Parent=Msa1072960-mRNA-1 |
| chr7_2 | exon | 70256556 | 70256953 | 70256556 | ID=Msa1072960-mRNA-1:exon:15758;Parent=Msa1072960-mRNA-1 |
| chr7_2 | exon | 70257050 | 70257420 | 70257050 | ID=Msa1072960-mRNA-1:exon:15757;Parent=Msa1072960-mRNA-1 |
| chr7_2 | five_prime_UTR | 70257050 | 70257420 | 70257050 | ID=Msa1072960-mRNA-1:five_prime_utr;Parent=Msa1072960-mRNA-1 |
| chr7_2 | five_prime_UTR | 70256950 | 70256953 | 70256950 | ID=Msa1072960-mRNA-1:five_prime_utr;Parent=Msa1072960-mRNA-1 |
| chr7_2 | CDS | 70256556 | 70256949 | 70256556 | ID=Msa1072960-mRNA-1:cds;Parent=Msa1072960-mRNA-1 |
| chr7_2 | CDS | 70256198 | 70256467 | 70256198 | ID=Msa1072960-mRNA-1:cds;Parent=Msa1072960-mRNA-1 |
| chr7_2 | CDS | 70254723 | 70255408 | 70254723 | ID=Msa1072960-mRNA-1:cds;Parent=Msa1072960-mRNA-1 |
| chr7_2 | three_prime_UTR | 70254286 | 70254722 | 70254286 | ID=Msa1072960-mRNA-1:three_prime_utr;Parent=Msa1072960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
