Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492900 | XP_003598897.1 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.20e-77 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492900 | sp|Q39080|DAD1_ARATH | 91.304 | 115 | 10 | 0 | 1 | 115 | 1 | 115 | 6.80e-74 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492900 | G7J1N4 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 5.75e-78 | 234 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0307280 | Msa0492900 | 0.801285 | 9.677781e-49 | -8.615850e-47 |
| Msa0350890 | Msa0492900 | 0.993870 | 7.808015e-203 | -8.615850e-47 |
| Msa0492900 | Msa1072960 | 0.810966 | 8.860956e-51 | -8.615850e-47 |
| Msa0492900 | Msa1160910 | 0.805374 | 1.376495e-49 | -8.615850e-47 |
| Msa0492900 | Msa1357350 | 0.817677 | 2.913313e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492900 | MtrunA17_Chr3g0085841 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.11e-81 | 234 |
| Msa0492900 | MtrunA17_Chr5g0410671 | 92.793 | 111 | 8 | 0 | 5 | 115 | 14 | 124 | 1.55e-73 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492900 | AT1G32210.1 | 91.304 | 115 | 10 | 0 | 1 | 115 | 1 | 115 | 6.91e-75 | 218 |
| Msa0492900 | AT2G35520.3 | 87.826 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 8.57e-72 | 209 |
| Msa0492900 | AT2G35520.1 | 87.826 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 8.57e-72 | 209 |
| Msa0492900 | AT2G35520.2 | 87.069 | 116 | 14 | 1 | 1 | 115 | 1 | 116 | 5.08e-70 | 205 |
| Msa0492900 | AT1G32210.2 | 92.045 | 88 | 7 | 0 | 1 | 88 | 1 | 88 | 4.68e-54 | 164 |
Find 43 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAACTTCCTTGGTTAAAT+TGG | 0.104421 | 3_4:-17097160 | Msa0492900:exon |
| CCATTTAACTCCTTCCTTTC+AGG | 0.114983 | 3_4:-17097820 | Msa0492900:CDS |
| CCTTGTTCTCTTTATTCACT+TGG | 0.305994 | 3_4:+17097557 | None:intergenic |
| AAGATCTTCTCCGCACTCTT+TGG | 0.356756 | 3_4:-17099368 | Msa0492900:CDS |
| CCTGAAAGGAAGGAGTTAAA+TGG | 0.359284 | 3_4:+17097820 | None:intergenic |
| TGAACTTCCTTGGTTAAATT+GGG | 0.383017 | 3_4:-17097159 | Msa0492900:exon |
| CCAGGTAGTTTACATGGCTT+TGG | 0.389862 | 3_4:-17097854 | Msa0492900:intron |
| TTGGTCATCATGAACTTCCT+TGG | 0.439540 | 3_4:-17097169 | Msa0492900:CDS |
| GTGCAATGTGGTGCTCCATT+TGG | 0.442688 | 3_4:-17097188 | Msa0492900:CDS |
| TCAGGCGTGCTTTCTTGCGT+AGG | 0.450212 | 3_4:-17097802 | Msa0492900:CDS |
| TCTCTTTATTCACTTGGATC+CGG | 0.452230 | 3_4:+17097563 | None:intergenic |
| TAAAGAGAACAAGGAATTCA+AGG | 0.465642 | 3_4:-17097548 | Msa0492900:intron |
| AGGAACAACCTTGAGATTTG+TGG | 0.468795 | 3_4:+17099326 | None:intergenic |
| GGAACAACCTTGAGATTTGT+GGG | 0.478791 | 3_4:+17099327 | None:intergenic |
| AAAATCTGCAAAAGCACGCT+CGG | 0.479534 | 3_4:+17097216 | None:intergenic |
| CCAAACCAAATTCCCAGAAA+AGG | 0.482966 | 3_4:+17097008 | None:intergenic |
| CGCAAGAAAGCACGCCTGAA+AGG | 0.485077 | 3_4:+17097806 | None:intergenic |
| CAGGCGTGCTTTCTTGCGTA+GGG | 0.486252 | 3_4:-17097801 | Msa0492900:CDS |
| TAATGACCAGGTAGTTTACA+TGG | 0.487275 | 3_4:-17097860 | Msa0492900:intron |
| AAAGGAAAGGGCAAATATCC+AGG | 0.495226 | 3_4:+17097026 | None:intergenic |
| GGTAGTTTACATGGCTTTGG+TGG | 0.498163 | 3_4:-17097851 | Msa0492900:CDS |
| GGAAGTTCATGATGACCAAA+TGG | 0.507403 | 3_4:+17097173 | None:intergenic |
| TGTCTTCACTGCCCTCATCC+AGG | 0.517420 | 3_4:-17099211 | Msa0492900:intron |
| GGAAAGGAAGTACCTGGATG+AGG | 0.534843 | 3_4:+17099199 | None:intergenic |
| AGAAAGCACGCCTGAAAGGA+AGG | 0.554097 | 3_4:+17097810 | None:intergenic |
| AAATCTGCAAAAGCACGCTC+GGG | 0.559759 | 3_4:+17097217 | None:intergenic |
| CAAATTCCCAGAAAAGGAAA+GGG | 0.559882 | 3_4:+17097014 | None:intergenic |
| GTAGGGACTGCAGTTCTCGC+TGG | 0.561141 | 3_4:-17097784 | Msa0492900:intron |
| CCAAGTGAATAAAGAGAACA+AGG | 0.563011 | 3_4:-17097557 | Msa0492900:CDS |
| CCAAATTCCCAGAAAAGGAA+AGG | 0.564117 | 3_4:+17097013 | None:intergenic |
| TGTAGAGACAACTACTTTAG+CGG | 0.571855 | 3_4:-17100513 | None:intergenic |
| ATAGAGCAGAAACCTGGGAT+AGG | 0.584980 | 3_4:-17097067 | Msa0492900:three_prime_UTR |
| GATGGTGAAGTCTACTGCTA+AGG | 0.589667 | 3_4:-17099397 | Msa0492900:CDS |
| GAAAGGAAGTACCTGGATGA+GGG | 0.591104 | 3_4:+17099200 | None:intergenic |
| GTAGTTTACATGGCTTTGGT+GGG | 0.595250 | 3_4:-17097850 | Msa0492900:CDS |
| GAAGGAAAAGTTGAAAACGA+TGG | 0.609152 | 3_4:-17099415 | Msa0492900:exon |
| AACAACCTTGAGATTTGTGG+GGG | 0.618905 | 3_4:+17099329 | None:intergenic |
| GAACAACCTTGAGATTTGTG+GGG | 0.633022 | 3_4:+17099328 | None:intergenic |
| TGTCTGAATTTCGAATCCAA+AGG | 0.647407 | 3_4:-17100469 | Msa0492900:intron |
| TGACTATCTAAATCTGAGCA+AGG | 0.656118 | 3_4:-17096923 | Msa0492900:three_prime_UTR |
| TCAGACAACTACGACAGACG+TGG | 0.669671 | 3_4:+17100485 | None:intergenic |
| ACATGAACCCAATTTAACCA+AGG | 0.672277 | 3_4:+17097152 | None:intergenic |
| AATAAGCAGACCAAAGAGTG+CGG | 0.691016 | 3_4:+17099358 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTAAATTAGAATAAAAA+AGG | + | chr3_4:17099394-17099413 | None:intergenic | 10.0% |
| !! | ACAGAAAAATAGAATAAAAT+TGG | + | chr3_4:17097089-17097108 | None:intergenic | 15.0% |
| !!! | TTTTTTCGAAATAGATATTA+CGG | - | chr3_4:17097480-17097499 | Msa0492900:intron | 15.0% |
| !!! | GTTTTTAAAAAATTAGACTT+GGG | + | chr3_4:17099420-17099439 | None:intergenic | 15.0% |
| !!! | TGTTTTTAAAAAATTAGACT+TGG | + | chr3_4:17099421-17099440 | None:intergenic | 15.0% |
| !!! | TACAAGTGAAATTAATATTT+TGG | - | chr3_4:17099446-17099465 | Msa0492900:intron | 15.0% |
| !! | AAGAAAACCTAAAAATATTA+CGG | + | chr3_4:17099987-17100006 | None:intergenic | 15.0% |
| !! | AAAAAAATAATAATAGTACC+TGG | - | chr3_4:17100378-17100397 | Msa0492900:intron | 15.0% |
| !! | TCTCTCATATATTCTTATAT+TGG | - | chr3_4:17097781-17097800 | Msa0492900:intron | 20.0% |
| !!! | AAATCAATCTTTGATTTTTG+TGG | - | chr3_4:17098314-17098333 | Msa0492900:intron | 20.0% |
| !! | AGTAAGATTAAAAAATTGGA+GGG | + | chr3_4:17099354-17099373 | None:intergenic | 20.0% |
| !! | GTAGAGTAAGATTAAAAAAT+TGG | + | chr3_4:17099358-17099377 | None:intergenic | 20.0% |
| !!! | TGAAATTAATATTTTGGTGA+AGG | - | chr3_4:17099452-17099471 | Msa0492900:intron | 20.0% |
| !!! | GAAATTAATATTTTGGTGAA+GGG | - | chr3_4:17099453-17099472 | Msa0492900:intron | 20.0% |
| !! | AAAAAAAAAAAAGAGCAAGT+AGG | + | chr3_4:17099490-17099509 | None:intergenic | 20.0% |
| !! | AGAAAACCTAAAAATATTAC+GGG | + | chr3_4:17099986-17100005 | None:intergenic | 20.0% |
| !!! | TTGGTATTTCATTTTAATAC+AGG | - | chr3_4:17100174-17100193 | Msa0492900:intron | 20.0% |
| !!! | TCTATTTTTCTTCTTCTTTT+GGG | + | chr3_4:17100340-17100359 | None:intergenic | 20.0% |
| ! | GTAAATTGAAACAATTGAGT+TGG | + | chr3_4:17097000-17097019 | None:intergenic | 25.0% |
| ! | CTATAATGCAAATGAATGAA+TGG | + | chr3_4:17097022-17097041 | None:intergenic | 25.0% |
| ! | CATAAATCATTGAACCTATA+AGG | + | chr3_4:17097205-17097224 | None:intergenic | 25.0% |
| !!! | GGTCTAAAAAAGTTTGTTAA+GGG | + | chr3_4:17097438-17097457 | None:intergenic | 25.0% |
| !!! | AGGTCTAAAAAAGTTTGTTA+AGG | + | chr3_4:17097439-17097458 | None:intergenic | 25.0% |
| ! | CTTTGTGGGAAAATATTTAT+AGG | - | chr3_4:17097636-17097655 | Msa0492900:intron | 25.0% |
| !!! | TATTTTTGTAGAAATGCAGA+GGG | + | chr3_4:17098128-17098147 | None:intergenic | 25.0% |
| !!! | ATATTTTTGTAGAAATGCAG+AGG | + | chr3_4:17098129-17098148 | None:intergenic | 25.0% |
| !! | AATCTGATAATGATATTCGT+AGG | + | chr3_4:17098342-17098361 | None:intergenic | 25.0% |
| ! | TATATGCAATAACATGTGTT+TGG | + | chr3_4:17098507-17098526 | None:intergenic | 25.0% |
| ! | CTTTATGTGTGTTATGTAAT+TGG | + | chr3_4:17098611-17098630 | None:intergenic | 25.0% |
| !! | TCTAGATAACAGTTTCTTTT+GGG | + | chr3_4:17098634-17098653 | None:intergenic | 25.0% |
| !! | ATCTAGATAACAGTTTCTTT+TGG | + | chr3_4:17098635-17098654 | None:intergenic | 25.0% |
| ! | AACTCCTAATTCCTAATTAA+TGG | + | chr3_4:17099121-17099140 | None:intergenic | 25.0% |
| ! | ATGAAGAGTTCTATGATATT+TGG | + | chr3_4:17099250-17099269 | None:intergenic | 25.0% |
| ! | GAGTAAGATTAAAAAATTGG+AGG | + | chr3_4:17099355-17099374 | None:intergenic | 25.0% |
| ! | TAAAAAAGGATAGTATCATC+TGG | + | chr3_4:17099380-17099399 | None:intergenic | 25.0% |
| !! | TTTTCATTTTCTTAATGACC+AGG | - | chr3_4:17099550-17099569 | Msa0492900:intron | 25.0% |
| !! | TTTCAACCCGTAATATTTTT+AGG | - | chr3_4:17099977-17099996 | Msa0492900:intron | 25.0% |
| ! | TTGTATTAATGTCATTAGTC+TGG | - | chr3_4:17100018-17100037 | Msa0492900:intron | 25.0% |
| ! | GAAATGAAGAAATAATGTGT+TGG | - | chr3_4:17100116-17100135 | Msa0492900:intron | 25.0% |
| !!! | CTCTATTTTTCTTCTTCTTT+TGG | + | chr3_4:17100341-17100360 | None:intergenic | 25.0% |
| !!! | TATTATTTTTTTCCTATCCC+AGG | + | chr3_4:17100370-17100389 | None:intergenic | 25.0% |
| AAACAAAATGCAGGTAGAAA+GGG | + | chr3_4:17097301-17097320 | None:intergenic | 30.0% | |
| AAAACAAAATGCAGGTAGAA+AGG | + | chr3_4:17097302-17097321 | None:intergenic | 30.0% | |
| CCTACAAAAAAACAAAATGC+AGG | + | chr3_4:17097310-17097329 | None:intergenic | 30.0% | |
| !!! | CCTGCATTTTGTTTTTTTGT+AGG | - | chr3_4:17097307-17097326 | Msa0492900:intron | 30.0% |
| TATTGAAACTAACTCTTCAG+AGG | - | chr3_4:17097407-17097426 | Msa0492900:intron | 30.0% | |
| ATCCAAGTCTCACATAAATA+AGG | + | chr3_4:17097459-17097478 | None:intergenic | 30.0% | |
| TTACGGAGAATAAAAGAATC+TGG | - | chr3_4:17097497-17097516 | Msa0492900:intron | 30.0% | |
| TACGGAGAATAAAAGAATCT+GGG | - | chr3_4:17097498-17097517 | Msa0492900:intron | 30.0% | |
| TTGTAAACTGAGATTCTTTG+TGG | - | chr3_4:17097621-17097640 | Msa0492900:intron | 30.0% | |
| TGTAAACTGAGATTCTTTGT+GGG | - | chr3_4:17097622-17097641 | Msa0492900:intron | 30.0% | |
| ! | TGAATTTTTGTGACTTGAAG+TGG | - | chr3_4:17097909-17097928 | Msa0492900:intron | 30.0% |
| GAAAGATGTTCACACAAATA+TGG | + | chr3_4:17097966-17097985 | None:intergenic | 30.0% | |
| !!! | TTTCTCTTTTTTCACTGTGT+AGG | - | chr3_4:17097982-17098001 | Msa0492900:intron | 30.0% |
| TTAGAAATTGATGCAAGGAA+AGG | + | chr3_4:17098242-17098261 | None:intergenic | 30.0% | |
| ! | GATCTTTAGAAATTGATGCA+AGG | + | chr3_4:17098247-17098266 | None:intergenic | 30.0% |
| !! | GATTGATTTGCTAATGTTAC+AGG | + | chr3_4:17098303-17098322 | None:intergenic | 30.0% |
| CCAAAATAAAACAGCTGATT+TGG | + | chr3_4:17098368-17098387 | None:intergenic | 30.0% | |
| !!! | CCAAATCAGCTGTTTTATTT+TGG | - | chr3_4:17098365-17098384 | Msa0492900:intron | 30.0% |
| ! | TTTGGTTACTGTTTGATGAT+TGG | - | chr3_4:17098383-17098402 | Msa0492900:intron | 30.0% |
| AATTCACCAAATCATCTTGA+AGG | - | chr3_4:17098723-17098742 | Msa0492900:intron | 30.0% | |
| ATCTTGAAGGAAGTAGATTA+GGG | - | chr3_4:17098736-17098755 | Msa0492900:intron | 30.0% | |
| !!! | AGTTAACTTTGTTTTGCTGT+CGG | + | chr3_4:17098838-17098857 | None:intergenic | 30.0% |
| CAAAACAAAGTTAACTTCCA+CGG | - | chr3_4:17098842-17098861 | Msa0492900:intron | 30.0% | |
| AAAACAAAGTTAACTTCCAC+GGG | - | chr3_4:17098843-17098862 | Msa0492900:intron | 30.0% | |
| ATATACCTGAATACGCTATA+GGG | - | chr3_4:17098949-17098968 | Msa0492900:intron | 30.0% | |
| !! | ATCATTGATTTGAGATCAGA+CGG | - | chr3_4:17099155-17099174 | Msa0492900:intron | 30.0% |
| !!! | GTTTTTTGGATTAGGATTCT+TGG | + | chr3_4:17099213-17099232 | None:intergenic | 30.0% |
| AAGTAAGATCACAATTGTTG+TGG | + | chr3_4:17099294-17099313 | None:intergenic | 30.0% | |
| !!! | ATATTTTGGTGAAGGGTTAA+AGG | - | chr3_4:17099460-17099479 | Msa0492900:intron | 30.0% |
| ACAAACTGGTCAAAAAATGA+AGG | + | chr3_4:17099837-17099856 | None:intergenic | 30.0% | |
| TAAAGAGAACAAGGAATTCA+AGG | - | chr3_4:17099874-17099893 | Msa0492900:intron | 30.0% | |
| AAAGTTGCATGGATAGTTAT+AGG | + | chr3_4:17099960-17099979 | None:intergenic | 30.0% | |
| TTCACTTGATACATTCTTAC+AGG | - | chr3_4:17100148-17100167 | Msa0492900:intron | 30.0% | |
| GATACATTCTTACAGGTAAT+TGG | - | chr3_4:17100155-17100174 | Msa0492900:intron | 30.0% | |
| ATGAACTTCCTTGGTTAAAT+TGG | - | chr3_4:17100262-17100281 | Msa0492900:intron | 30.0% | |
| TGAACTTCCTTGGTTAAATT+GGG | - | chr3_4:17100263-17100282 | Msa0492900:intron | 30.0% | |
| TGTCTGAATTTCGAATCCAA+AGG | - | chr3_4:17096953-17096972 | Msa0492900:three_prime_UTR | 35.0% | |
| TGCATCTTCATTTGCCTTAT+AGG | - | chr3_4:17097188-17097207 | Msa0492900:CDS | 35.0% | |
| AACAAAATGCAGGTAGAAAG+GGG | + | chr3_4:17097300-17097319 | None:intergenic | 35.0% | |
| ! | GCGATATAAACTTGATGACA+TGG | + | chr3_4:17097345-17097364 | None:intergenic | 35.0% |
| ! | GACCTTATTTATGTGAGACT+TGG | - | chr3_4:17097454-17097473 | Msa0492900:intron | 35.0% |
| !! | TGTTGACTGCACATATCTTT+TGG | - | chr3_4:17097719-17097738 | Msa0492900:intron | 35.0% |
| ! | TTTTTCACTGTGTAGGTAGA+AGG | - | chr3_4:17097989-17098008 | Msa0492900:intron | 35.0% |
| GAAGGAAAAGTTGAAAACGA+TGG | - | chr3_4:17098007-17098026 | Msa0492900:intron | 35.0% | |
| !! | TATTTTTGCTAACCCTGCTT+TGG | - | chr3_4:17098150-17098169 | Msa0492900:intron | 35.0% |
| CTAAATGAAAAGCCAAAGCA+GGG | + | chr3_4:17098165-17098184 | None:intergenic | 35.0% | |
| TCTAAATGAAAAGCCAAAGC+AGG | + | chr3_4:17098166-17098185 | None:intergenic | 35.0% | |
| ! | TTACTGTTTGATGATTGGAG+TGG | - | chr3_4:17098388-17098407 | Msa0492900:intron | 35.0% |
| TGCTTAGACAATGTTAGCAT+TGG | - | chr3_4:17098441-17098460 | Msa0492900:intron | 35.0% | |
| GCTTAGACAATGTTAGCATT+GGG | - | chr3_4:17098442-17098461 | Msa0492900:intron | 35.0% | |
| CTTAGACAATGTTAGCATTG+GGG | - | chr3_4:17098443-17098462 | Msa0492900:intron | 35.0% | |
| CAGATTTGTGAAGTAACTTC+TGG | + | chr3_4:17098557-17098576 | None:intergenic | 35.0% | |
| TTACTTCACAAATCTGCAGA+AGG | - | chr3_4:17098561-17098580 | Msa0492900:intron | 35.0% | |
| TTTGACCAATGATTCGAGAT+TGG | - | chr3_4:17098686-17098705 | Msa0492900:intron | 35.0% | |
| CTACTTCCTTCAAGATGATT+TGG | + | chr3_4:17098732-17098751 | None:intergenic | 35.0% | |
| CATCTTGAAGGAAGTAGATT+AGG | - | chr3_4:17098735-17098754 | Msa0492900:intron | 35.0% | |
| GTGAATCGAATAGGTTACAT+AGG | + | chr3_4:17098806-17098825 | None:intergenic | 35.0% | |
| TGCAGGAAATGCAAATGTAT+AGG | - | chr3_4:17098896-17098915 | Msa0492900:intron | 35.0% | |
| GATATACCTGAATACGCTAT+AGG | - | chr3_4:17098948-17098967 | Msa0492900:intron | 35.0% | |
| !! | TCTGGATGGATTAAGATAAC+AGG | + | chr3_4:17099046-17099065 | None:intergenic | 35.0% |
| TGTTATCTTAATCCATCCAG+AGG | - | chr3_4:17099045-17099064 | Msa0492900:intron | 35.0% | |
| GTTATCTTAATCCATCCAGA+GGG | - | chr3_4:17099046-17099065 | Msa0492900:intron | 35.0% | |
| AATTAATGGCTGGTAGGTAA+CGG | + | chr3_4:17099107-17099126 | None:intergenic | 35.0% | |
| TTACCTACCAGCCATTAATT+AGG | - | chr3_4:17099107-17099126 | Msa0492900:intron | 35.0% | |
| ATTCCTAATTAATGGCTGGT+AGG | + | chr3_4:17099113-17099132 | None:intergenic | 35.0% | |
| CCTAATTCCTAATTAATGGC+TGG | + | chr3_4:17099117-17099136 | None:intergenic | 35.0% | |
| CCAGCCATTAATTAGGAATT+AGG | - | chr3_4:17099114-17099133 | Msa0492900:intron | 35.0% | |
| TGTGACACGGTAAATAATCT+GGG | + | chr3_4:17099181-17099200 | None:intergenic | 35.0% | |
| TTGGCATTAAATGTGTGACA+CGG | + | chr3_4:17099194-17099213 | None:intergenic | 35.0% | |
| ATGTCTGGAAGGATATTATC+TGG | + | chr3_4:17099319-17099338 | None:intergenic | 35.0% | |
| TATCCTTCCAGACATTATTG+AGG | - | chr3_4:17099324-17099343 | Msa0492900:intron | 35.0% | |
| ATTCCTCAATAATGTCTGGA+AGG | + | chr3_4:17099330-17099349 | None:intergenic | 35.0% | |
| TAATGACCAGGTAGTTTACA+TGG | - | chr3_4:17099562-17099581 | Msa0492900:intron | 35.0% | |
| !! | ACAATAGTTCTAATCTGCCT+AGG | - | chr3_4:17099743-17099762 | Msa0492900:intron | 35.0% |
| GAACTATTGTATCTGAACCT+AGG | + | chr3_4:17099763-17099782 | None:intergenic | 35.0% | |
| !! | ACAATAGTTCTAATCTGCCT+AGG | - | chr3_4:17099743-17099762 | Msa0492900:intron | 35.0% |
| AAACTTATGCATACGAACCT+AGG | + | chr3_4:17099793-17099812 | None:intergenic | 35.0% | |
| ACTGGTCAAAAAATGAAGGA+TGG | + | chr3_4:17099833-17099852 | None:intergenic | 35.0% | |
| !!! | TTTTTTGACCAGTTTGTCTC+CGG | - | chr3_4:17099840-17099859 | Msa0492900:intron | 35.0% |
| TCTCTTTATTCACTTGGATC+CGG | + | chr3_4:17099862-17099881 | None:intergenic | 35.0% | |
| CCTTGTTCTCTTTATTCACT+TGG | + | chr3_4:17099868-17099887 | None:intergenic | 35.0% | |
| CCAAGTGAATAAAGAGAACA+AGG | - | chr3_4:17099865-17099884 | Msa0492900:intron | 35.0% | |
| CTTGACTGAACAAAGTAGAA+AGG | - | chr3_4:17100094-17100113 | Msa0492900:intron | 35.0% | |
| ! | AGATTTTGTTCTGTGCAATG+TGG | - | chr3_4:17100222-17100241 | Msa0492900:intron | 35.0% |
| ACATGAACCCAATTTAACCA+AGG | + | chr3_4:17100273-17100292 | None:intergenic | 35.0% | |
| ACTCTGTTCTAATGGAATCA+AGG | + | chr3_4:17100302-17100321 | None:intergenic | 35.0% | |
| GTTCTGTAACTCTGTTCTAA+TGG | + | chr3_4:17100310-17100329 | None:intergenic | 35.0% | |
| AGAAAAATAGAGCAGAAACC+TGG | - | chr3_4:17100349-17100368 | Msa0492900:intron | 35.0% | |
| GAAAAATAGAGCAGAAACCT+GGG | - | chr3_4:17100350-17100369 | Msa0492900:intron | 35.0% | |
| ! | ATATTTGCCCTTTCCTTTTC+TGG | - | chr3_4:17100401-17100420 | Msa0492900:intron | 35.0% |
| ! | TATTTGCCCTTTCCTTTTCT+GGG | - | chr3_4:17100402-17100421 | Msa0492900:intron | 35.0% |
| CAAATTCCCAGAAAAGGAAA+GGG | + | chr3_4:17100411-17100430 | None:intergenic | 35.0% | |
| TGACTATCTAAATCTGAGCA+AGG | - | chr3_4:17100499-17100518 | Msa0492900:five_prime_UTR | 35.0% | |
| !! | ATTGAGTTGGATCTGAGTGA+AGG | + | chr3_4:17096987-17097006 | None:intergenic | 40.0% |
| AGAGAAACACACGTTGAGTT+AGG | + | chr3_4:17097156-17097175 | None:intergenic | 40.0% | |
| ACAAAATGCAGGTAGAAAGG+GGG | + | chr3_4:17097299-17097318 | None:intergenic | 40.0% | |
| AATAAGCAGACCAAAGAGTG+CGG | + | chr3_4:17098067-17098086 | None:intergenic | 40.0% | |
| AACAACCTTGAGATTTGTGG+GGG | + | chr3_4:17098096-17098115 | None:intergenic | 40.0% | |
| GAACAACCTTGAGATTTGTG+GGG | + | chr3_4:17098097-17098116 | None:intergenic | 40.0% | |
| GGAACAACCTTGAGATTTGT+GGG | + | chr3_4:17098098-17098117 | None:intergenic | 40.0% | |
| AGGAACAACCTTGAGATTTG+TGG | + | chr3_4:17098099-17098118 | None:intergenic | 40.0% | |
| TGACATTGTGCTGAATTTCC+CGG | - | chr3_4:17098530-17098549 | Msa0492900:intron | 40.0% | |
| TTGTGAAGTAACTTCTGGAC+CGG | + | chr3_4:17098552-17098571 | None:intergenic | 40.0% | |
| ATCGAATAGGTTACATAGGC+AGG | + | chr3_4:17098802-17098821 | None:intergenic | 40.0% | |
| TATCCGCAATCGCATATTCT+GGG | + | chr3_4:17098932-17098951 | None:intergenic | 40.0% | |
| ATATCCGCAATCGCATATTC+TGG | + | chr3_4:17098933-17098952 | None:intergenic | 40.0% | |
| TAAAATATCCCAGCTGGCAA+GGG | + | chr3_4:17098984-17099003 | None:intergenic | 40.0% | |
| ATAAAATATCCCAGCTGGCA+AGG | + | chr3_4:17098985-17099004 | None:intergenic | 40.0% | |
| CTCACATAAAATATCCCAGC+TGG | + | chr3_4:17098990-17099009 | None:intergenic | 40.0% | |
| CCTCTTTCTTCCTTTGCTTT+GGG | - | chr3_4:17099014-17099033 | Msa0492900:intron | 40.0% | |
| !! | ATGGAATGGCATTGGCTTAT+GGG | + | chr3_4:17099077-17099096 | None:intergenic | 40.0% |
| !! | AATGGAATGGCATTGGCTTA+TGG | + | chr3_4:17099078-17099097 | None:intergenic | 40.0% |
| GGAAATGAATGGAATGGCAT+TGG | + | chr3_4:17099085-17099104 | None:intergenic | 40.0% | |
| ! | GTAACGGGAAATGAATGGAA+TGG | + | chr3_4:17099091-17099110 | None:intergenic | 40.0% |
| ATTAATGGCTGGTAGGTAAC+GGG | + | chr3_4:17099106-17099125 | None:intergenic | 40.0% | |
| GTGTGACACGGTAAATAATC+TGG | + | chr3_4:17099182-17099201 | None:intergenic | 40.0% | |
| !!! | GTGAGGCAGTTTTTTGGATT+AGG | + | chr3_4:17099221-17099240 | None:intergenic | 40.0% |
| AATCCAAAAAACTGCCTCAC+TGG | - | chr3_4:17099221-17099240 | Msa0492900:CDS | 40.0% | |
| ATGATATTTGGACTCCAGTG+AGG | + | chr3_4:17099238-17099257 | None:intergenic | 40.0% | |
| GGGAATTCCTCAATAATGTC+TGG | + | chr3_4:17099334-17099353 | None:intergenic | 40.0% | |
| TTTGGTGAAGGGTTAAAGGT+TGG | - | chr3_4:17099464-17099483 | Msa0492900:intron | 40.0% | |
| !! | GTAGTTTACATGGCTTTGGT+GGG | - | chr3_4:17099572-17099591 | Msa0492900:intron | 40.0% |
| CCTGAAAGGAAGGAGTTAAA+TGG | + | chr3_4:17099605-17099624 | None:intergenic | 40.0% | |
| CCATTTAACTCCTTCCTTTC+AGG | - | chr3_4:17099602-17099621 | Msa0492900:intron | 40.0% | |
| GTGTGCATAAATTGCATAGC+TGG | + | chr3_4:17099699-17099718 | None:intergenic | 40.0% | |
| ! | ATTACGGGTTGAAAGTTGCA+TGG | + | chr3_4:17099971-17099990 | None:intergenic | 40.0% |
| ! | AAAATCTGCAAAAGCACGCT+CGG | + | chr3_4:17100209-17100228 | None:intergenic | 40.0% |
| GGAAGTTCATGATGACCAAA+TGG | + | chr3_4:17100252-17100271 | None:intergenic | 40.0% | |
| TTGGTCATCATGAACTTCCT+TGG | - | chr3_4:17100253-17100272 | Msa0492900:intron | 40.0% | |
| AAAGGAAAGGGCAAATATCC+AGG | + | chr3_4:17100399-17100418 | None:intergenic | 40.0% | |
| CCAAATTCCCAGAAAAGGAA+AGG | + | chr3_4:17100412-17100431 | None:intergenic | 40.0% | |
| !! | CCTTTCCTTTTCTGGGAATT+TGG | - | chr3_4:17100409-17100428 | Msa0492900:intron | 40.0% |
| CCAAACCAAATTCCCAGAAA+AGG | + | chr3_4:17100417-17100436 | None:intergenic | 40.0% | |
| !! | CCTTTTCTGGGAATTTGGTT+TGG | - | chr3_4:17100414-17100433 | Msa0492900:intron | 40.0% |
| GATGGTGAAGTCTACTGCTA+AGG | - | chr3_4:17098025-17098044 | Msa0492900:intron | 45.0% | |
| AAGATCTTCTCCGCACTCTT+TGG | - | chr3_4:17098054-17098073 | Msa0492900:intron | 45.0% | |
| AGAAATGCAGAGGGAAAGAG+AGG | + | chr3_4:17098119-17098138 | None:intergenic | 45.0% | |
| !! | GAAAGGAAGTACCTGGATGA+GGG | + | chr3_4:17098225-17098244 | None:intergenic | 45.0% |
| !! | ATGCAAGGAAAGGAAGTACC+TGG | + | chr3_4:17098232-17098251 | None:intergenic | 45.0% |
| ! | AGACAATGTTAGCATTGGGG+TGG | - | chr3_4:17098446-17098465 | Msa0492900:intron | 45.0% |
| GGGTGGAAGAAACTCTTATC+TGG | - | chr3_4:17098463-17098482 | Msa0492900:intron | 45.0% | |
| TGTGAAGTAACTTCTGGACC+GGG | + | chr3_4:17098551-17098570 | None:intergenic | 45.0% | |
| !! | TGCAGAAGGCACTTGAAACA+TGG | - | chr3_4:17098575-17098594 | Msa0492900:intron | 45.0% |
| AGGCACTTGAAACATGGACA+CGG | - | chr3_4:17098581-17098600 | Msa0492900:intron | 45.0% | |
| AATGCATGTAAGTGCGTGCA+AGG | + | chr3_4:17098659-17098678 | None:intergenic | 45.0% | |
| GCTCACCAATCTCGAATCAT+TGG | + | chr3_4:17098694-17098713 | None:intergenic | 45.0% | |
| TGAAGGAAGTAGATTAGGGC+AGG | - | chr3_4:17098740-17098759 | Msa0492900:intron | 45.0% | |
| GCGAGTTCTCATACATTTCC+TGG | + | chr3_4:17098775-17098794 | None:intergenic | 45.0% | |
| ATAGGTTACATAGGCAGGAC+AGG | + | chr3_4:17098797-17098816 | None:intergenic | 45.0% | |
| ACCTATTCGATTCACTCTCC+TGG | - | chr3_4:17098811-17098830 | Msa0492900:intron | 45.0% | |
| ACCAGGAGAGTGAATCGAAT+AGG | + | chr3_4:17098815-17098834 | None:intergenic | 45.0% | |
| GGATCTGCATCAAAGGGAAA+TGG | - | chr3_4:17098864-17098883 | Msa0492900:intron | 45.0% | |
| TTGCATTTCCTGCAATGTCC+AGG | + | chr3_4:17098890-17098909 | None:intergenic | 45.0% | |
| GCAAATGTATAGGCTGCACA+TGG | - | chr3_4:17098906-17098925 | Msa0492900:intron | 45.0% | |
| ATCAGCCCTATAGCGTATTC+AGG | + | chr3_4:17098957-17098976 | None:intergenic | 45.0% | |
| GCCTCTTTCTTCCTTTGCTT+TGG | - | chr3_4:17099013-17099032 | Msa0492900:intron | 45.0% | |
| CCCAAAGCAAAGGAAGAAAG+AGG | + | chr3_4:17099017-17099036 | None:intergenic | 45.0% | |
| !! | TGGAATGGCATTGGCTTATG+GGG | + | chr3_4:17099076-17099095 | None:intergenic | 45.0% |
| !! | GGTAGGTAACGGGAAATGAA+TGG | + | chr3_4:17099096-17099115 | None:intergenic | 45.0% |
| !!! | ACTCCAGTGAGGCAGTTTTT+TGG | + | chr3_4:17099227-17099246 | None:intergenic | 45.0% |
| CCAAAGCCATGTAAACTACC+TGG | + | chr3_4:17099571-17099590 | None:intergenic | 45.0% | |
| CCAGGTAGTTTACATGGCTT+TGG | - | chr3_4:17099568-17099587 | Msa0492900:intron | 45.0% | |
| !! | GGTAGTTTACATGGCTTTGG+TGG | - | chr3_4:17099571-17099590 | Msa0492900:intron | 45.0% |
| ! | AAATCTGCAAAAGCACGCTC+GGG | + | chr3_4:17100208-17100227 | None:intergenic | 45.0% |
| ATAGAGCAGAAACCTGGGAT+AGG | - | chr3_4:17100355-17100374 | Msa0492900:intron | 45.0% | |
| TCAGACAACTACGACAGACG+TGG | + | chr3_4:17096940-17096959 | None:intergenic | 50.0% | |
| AGTGAAGGCGAGGTTACCTT+TGG | + | chr3_4:17096972-17096991 | None:intergenic | 50.0% | |
| TGGGTCAGATGCAGCTGATA+CGG | - | chr3_4:17097517-17097536 | Msa0492900:intron | 50.0% | |
| CACAATCGCAATCTCAGTCG+TGG | + | chr3_4:17097584-17097603 | None:intergenic | 50.0% | |
| CACGACTGAGATTGCGATTG+TGG | - | chr3_4:17097582-17097601 | Msa0492900:intron | 50.0% | |
| TGCAACCCCCACAAATCTCA+AGG | - | chr3_4:17098088-17098107 | Msa0492900:intron | 50.0% | |
| !! | GGAAAGGAAGTACCTGGATG+AGG | + | chr3_4:17098226-17098245 | None:intergenic | 50.0% |
| !!! | CTTTGTTTTGCTGTCGGACC+AGG | + | chr3_4:17098832-17098851 | None:intergenic | 50.0% |
| TTCCACGGGATCTGCATCAA+AGG | - | chr3_4:17098857-17098876 | Msa0492900:intron | 50.0% | |
| TCCACGGGATCTGCATCAAA+GGG | - | chr3_4:17098858-17098877 | Msa0492900:intron | 50.0% | |
| TGCATCAAAGGGAAATGGCC+TGG | - | chr3_4:17098869-17098888 | Msa0492900:intron | 50.0% | |
| TGGCCCAGAATATGCGATTG+CGG | - | chr3_4:17098926-17098945 | Msa0492900:intron | 50.0% | |
| TGATCTTTCCCTTGCCAGCT+GGG | - | chr3_4:17098973-17098992 | Msa0492900:intron | 50.0% | |
| !! | TCTTCCTTTGCTTTGGGACG+AGG | - | chr3_4:17099020-17099039 | Msa0492900:intron | 50.0% |
| CACAATTGTTGTGGTGCTCG+AGG | + | chr3_4:17099285-17099304 | None:intergenic | 50.0% | |
| ! | AGAAAGCACGCCTGAAAGGA+AGG | + | chr3_4:17099615-17099634 | None:intergenic | 50.0% |
| ACTTGGATCCGGAGACAAAC+TGG | + | chr3_4:17099851-17099870 | None:intergenic | 50.0% | |
| GTGCAATGTGGTGCTCCATT+TGG | - | chr3_4:17100234-17100253 | Msa0492900:intron | 50.0% | |
| GTTGGATCTGAGTGAAGGCG+AGG | + | chr3_4:17096982-17097001 | None:intergenic | 55.0% | |
| CTCATATTGTGAGCGCGTCG+TGG | - | chr3_4:17097540-17097559 | Msa0492900:intron | 55.0% | |
| TGTCTTCACTGCCCTCATCC+AGG | - | chr3_4:17098211-17098230 | Msa0492900:intron | 55.0% | |
| TCCCTTTGATGCAGATCCCG+TGG | + | chr3_4:17098862-17098881 | None:intergenic | 55.0% | |
| GGAAATGGCCTGGACATTGC+AGG | - | chr3_4:17098879-17098898 | Msa0492900:intron | 55.0% | |
| CTGATCTTTCCCTTGCCAGC+TGG | - | chr3_4:17098972-17098991 | Msa0492900:intron | 55.0% | |
| ! | CGCAAGAAAGCACGCCTGAA+AGG | + | chr3_4:17099619-17099638 | None:intergenic | 55.0% |
| TCAGGCGTGCTTTCTTGCGT+AGG | - | chr3_4:17099620-17099639 | Msa0492900:intron | 55.0% | |
| CAGGCGTGCTTTCTTGCGTA+GGG | - | chr3_4:17099621-17099640 | Msa0492900:intron | 55.0% | |
| CTGCAGTTCTCGCTGGTAAG+TGG | - | chr3_4:17099645-17099664 | Msa0492900:intron | 55.0% | |
| CAGGCCTCGTCCCAAAGCAA+AGG | + | chr3_4:17099027-17099046 | None:intergenic | 60.0% | |
| ! | TATGGGGCACTCCCTCTGGA+TGG | + | chr3_4:17099060-17099079 | None:intergenic | 60.0% |
| GTAGGGACTGCAGTTCTCGC+TGG | - | chr3_4:17099638-17099657 | Msa0492900:intron | 60.0% | |
| TAGGGCAGGCTAACAGCGCC+AGG | - | chr3_4:17098754-17098773 | Msa0492900:intron | 65.0% | |
| ! | GGCTTATGGGGCACTCCCTC+TGG | + | chr3_4:17099064-17099083 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 17096917 | 17100527 | 17096917 | ID=Msa0492900;Name=Msa0492900 |
| chr3_4 | mRNA | 17096917 | 17100527 | 17096917 | ID=Msa0492900-mRNA-1;Parent=Msa0492900;Name=Msa0492900-mRNA-1;_AED=0.31;_eAED=0.31;_QI=80|1|1|1|0.66|0.42|7|220|115 |
| chr3_4 | exon | 17096917 | 17097125 | 17096917 | ID=Msa0492900-mRNA-1:exon:4860;Parent=Msa0492900-mRNA-1 |
| chr3_4 | exon | 17097154 | 17097248 | 17097154 | ID=Msa0492900-mRNA-1:exon:4859;Parent=Msa0492900-mRNA-1 |
| chr3_4 | exon | 17097549 | 17097592 | 17097549 | ID=Msa0492900-mRNA-1:exon:4858;Parent=Msa0492900-mRNA-1 |
| chr3_4 | exon | 17097785 | 17097872 | 17097785 | ID=Msa0492900-mRNA-1:exon:4857;Parent=Msa0492900-mRNA-1 |
| chr3_4 | exon | 17099212 | 17099259 | 17099212 | ID=Msa0492900-mRNA-1:exon:4856;Parent=Msa0492900-mRNA-1 |
| chr3_4 | exon | 17099335 | 17099440 | 17099335 | ID=Msa0492900-mRNA-1:exon:4855;Parent=Msa0492900-mRNA-1 |
| chr3_4 | exon | 17100470 | 17100527 | 17100470 | ID=Msa0492900-mRNA-1:exon:4854;Parent=Msa0492900-mRNA-1 |
| chr3_4 | five_prime_UTR | 17100470 | 17100527 | 17100470 | ID=Msa0492900-mRNA-1:five_prime_utr;Parent=Msa0492900-mRNA-1 |
| chr3_4 | five_prime_UTR | 17099419 | 17099440 | 17099419 | ID=Msa0492900-mRNA-1:five_prime_utr;Parent=Msa0492900-mRNA-1 |
| chr3_4 | CDS | 17099335 | 17099418 | 17099335 | ID=Msa0492900-mRNA-1:cds;Parent=Msa0492900-mRNA-1 |
| chr3_4 | CDS | 17099212 | 17099259 | 17099212 | ID=Msa0492900-mRNA-1:cds;Parent=Msa0492900-mRNA-1 |
| chr3_4 | CDS | 17097785 | 17097872 | 17097785 | ID=Msa0492900-mRNA-1:cds;Parent=Msa0492900-mRNA-1 |
| chr3_4 | CDS | 17097549 | 17097592 | 17097549 | ID=Msa0492900-mRNA-1:cds;Parent=Msa0492900-mRNA-1 |
| chr3_4 | CDS | 17097165 | 17097248 | 17097165 | ID=Msa0492900-mRNA-1:cds;Parent=Msa0492900-mRNA-1 |
| chr3_4 | three_prime_UTR | 17097154 | 17097164 | 17097154 | ID=Msa0492900-mRNA-1:three_prime_utr;Parent=Msa0492900-mRNA-1 |
| chr3_4 | three_prime_UTR | 17096917 | 17097125 | 17096917 | ID=Msa0492900-mRNA-1:three_prime_utr;Parent=Msa0492900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
