Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352040 | XP_003599003.2 | 87.111 | 225 | 23 | 2 | 1 | 225 | 1 | 219 | 1.48e-139 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352040 | sp|Q94F39|AFP3_ARATH | 35.193 | 233 | 111 | 7 | 14 | 225 | 17 | 230 | 1.83e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352040 | G7IZB8 | 87.111 | 225 | 23 | 2 | 1 | 225 | 1 | 219 | 7.05e-140 | 399 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0352040 | Msa0398840 | 0.805870 | 1.083527e-49 | -8.615850e-47 |
| Msa0352040 | Msa0446080 | 0.910310 | 2.162277e-82 | -8.615850e-47 |
| Msa0352040 | Msa0446090 | 0.935513 | 7.538122e-97 | -8.615850e-47 |
| Msa0352040 | Msa1305740 | 0.803043 | 4.208123e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352040 | MtrunA17_Chr3g0086931 | 87.111 | 225 | 23 | 2 | 1 | 225 | 1 | 219 | 1.36e-143 | 399 |
| Msa0352040 | MtrunA17_Chr7g0219081 | 67.606 | 71 | 22 | 1 | 151 | 220 | 287 | 357 | 6.03e-27 | 105 |
| Msa0352040 | MtrunA17_Chr5g0419521 | 64.706 | 68 | 23 | 1 | 156 | 222 | 333 | 400 | 9.70e-24 | 97.8 |
| Msa0352040 | MtrunA17_Chr8g0339431 | 33.632 | 223 | 110 | 9 | 7 | 225 | 107 | 295 | 6.25e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0352040 | AT3G29575.3 | 35.193 | 233 | 111 | 7 | 14 | 225 | 17 | 230 | 1.86e-31 | 115 |
| Msa0352040 | AT3G29575.1 | 35.193 | 233 | 111 | 7 | 14 | 225 | 17 | 230 | 1.86e-31 | 115 |
| Msa0352040 | AT3G29575.4 | 35.193 | 233 | 111 | 7 | 14 | 225 | 17 | 230 | 1.86e-31 | 115 |
| Msa0352040 | AT3G07255.1 | 54.412 | 68 | 31 | 0 | 158 | 225 | 226 | 293 | 1.42e-23 | 96.3 |
| Msa0352040 | AT1G13740.1 | 46.226 | 106 | 53 | 2 | 119 | 220 | 236 | 341 | 9.08e-23 | 94.7 |
| Msa0352040 | AT1G69260.1 | 62.500 | 64 | 23 | 1 | 158 | 220 | 273 | 336 | 6.79e-22 | 92.4 |
| Msa0352040 | AT3G02140.1 | 34.946 | 186 | 97 | 5 | 58 | 220 | 128 | 312 | 3.47e-17 | 79.3 |
| Msa0352040 | AT4G28910.3 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 1.55e-12 | 66.6 |
| Msa0352040 | AT4G28910.1 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 1.55e-12 | 66.6 |
| Msa0352040 | AT4G28910.2 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 1.55e-12 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGACTATTGTAGTCTTAA+AGG | 0.159724 | 3_1:-19699501 | Msa0352040:CDS |
| CTTGGTTGATATCTGAAATT+TGG | 0.160083 | 3_1:+19699632 | None:intergenic |
| ACTCTTAAGCTTTCTAGTTT+TGG | 0.208662 | 3_1:-19701522 | Msa0352040:CDS |
| TATCCTCATAATTCCTATTC+TGG | 0.225106 | 3_1:-19702152 | None:intergenic |
| CCTTCTATTCGCTTCCCATT+TGG | 0.252102 | 3_1:+19699423 | None:intergenic |
| GAAATATTTCTGTGTCAAAT+TGG | 0.280175 | 3_1:-19701443 | Msa0352040:CDS |
| CTTCTATTCGCTTCCCATTT+GGG | 0.304576 | 3_1:+19699424 | None:intergenic |
| AAAACTTGTTAGCCACTTAG+AGG | 0.320679 | 3_1:+19699052 | None:intergenic |
| ATATCAACCAAGCATGAAAA+TGG | 0.354593 | 3_1:-19699621 | Msa0352040:CDS |
| CCAAATGGGAAGCGAATAGA+AGG | 0.361905 | 3_1:-19699423 | Msa0352040:CDS |
| TGCTCTCTTCCAGTTGATAG+TGG | 0.385553 | 3_1:-19701390 | Msa0352040:CDS |
| AAAACAGTGATATGCTTCAT+TGG | 0.397580 | 3_1:+19699288 | None:intergenic |
| ATTATCCTTCCACTATCAAC+TGG | 0.442082 | 3_1:+19701381 | None:intergenic |
| ACGACTGGAGATGGCCCAAA+TGG | 0.442097 | 3_1:-19699438 | Msa0352040:CDS |
| ATAAGGTCATCATCAATTGC+TGG | 0.444073 | 3_1:-19701474 | Msa0352040:CDS |
| AGTGGAATTTCCTTGCCTAC+TGG | 0.445192 | 3_1:+19699579 | None:intergenic |
| AACTAGAAAGCTTAAGAGTA+AGG | 0.446003 | 3_1:+19701526 | None:intergenic |
| AAAGATATACAAACCAGAAT+AGG | 0.449287 | 3_1:+19702139 | None:intergenic |
| TCATCAATTGCTGGAGAGAT+AGG | 0.451851 | 3_1:-19701465 | Msa0352040:CDS |
| TGGAAGAAAAGAGGCTGATA+AGG | 0.452618 | 3_1:-19701491 | Msa0352040:CDS |
| GCATGCATCACAAACTCCTT+TGG | 0.454512 | 3_1:+19699333 | None:intergenic |
| TGTTAGAATGTAAAGGTAAG+TGG | 0.458444 | 3_1:-19699213 | Msa0352040:three_prime_UTR |
| AAACTAAACTAAGTCAAAGA+TGG | 0.482680 | 3_1:+19699179 | None:intergenic |
| CCTTTAAGACTACAATAGTC+GGG | 0.484073 | 3_1:+19699501 | None:intergenic |
| CAAGGGAGTTCTGAAGTTGA+AGG | 0.494390 | 3_1:-19701742 | Msa0352040:five_prime_UTR |
| TCGTCTTTGTTAGAATGTAA+AGG | 0.495851 | 3_1:-19699220 | Msa0352040:three_prime_UTR |
| CAAGCATGAAAATGGTTCAA+TGG | 0.498361 | 3_1:-19699613 | Msa0352040:CDS |
| TTAGCAAACTTAGGTGGAAG+TGG | 0.503620 | 3_1:+19699561 | None:intergenic |
| TGTTTAGTATTAGCAAACTT+AGG | 0.505715 | 3_1:+19699552 | None:intergenic |
| GTCGATCTCTAAAATGAGAC+TGG | 0.510276 | 3_1:+19699264 | None:intergenic |
| AAACCAGAATAGGAATTATG+AGG | 0.510655 | 3_1:+19702149 | None:intergenic |
| AAGGGTTTCTGTACAAGTAT+AGG | 0.514024 | 3_1:-19699404 | Msa0352040:CDS |
| ACCTTTAAGACTACAATAGT+CGG | 0.514274 | 3_1:+19699500 | None:intergenic |
| TTTCTGTACAAGTATAGGTC+TGG | 0.514901 | 3_1:-19699399 | Msa0352040:CDS |
| TCTCCAGTCGTTGTAACGCT+TGG | 0.516896 | 3_1:+19699450 | None:intergenic |
| ATGCCAAGCGTTACAACGAC+TGG | 0.521031 | 3_1:-19699453 | Msa0352040:CDS |
| CGACTGGAGATGGCCCAAAT+GGG | 0.526168 | 3_1:-19699437 | Msa0352040:CDS |
| TTAAAACCAAAGAGAAAATG+AGG | 0.532155 | 3_1:+19701714 | None:intergenic |
| GAGCAAGATCTCTCTAAAGA+TGG | 0.534736 | 3_1:+19701408 | None:intergenic |
| CTCTTCCAGTTGATAGTGGA+AGG | 0.540775 | 3_1:-19701386 | Msa0352040:CDS |
| AGCGTTACAACGACTGGAGA+TGG | 0.557678 | 3_1:-19699447 | Msa0352040:CDS |
| GGTCCAACATATTCATCTGA+AGG | 0.575615 | 3_1:-19699666 | Msa0352040:CDS |
| GTGAAAATGTGGAAGAAAAG+AGG | 0.578316 | 3_1:-19701500 | Msa0352040:CDS |
| ACTCCTTCAGATGAATATGT+TGG | 0.580519 | 3_1:+19699663 | None:intergenic |
| AAGGAGTTTGTGATGCATGC+TGG | 0.584880 | 3_1:-19699330 | Msa0352040:CDS |
| ATTTCTGAAATGCCTCTAAG+TGG | 0.587070 | 3_1:-19699064 | Msa0352040:three_prime_UTR |
| TTTCAAGAAACCAGTAGGCA+AGG | 0.595224 | 3_1:-19699589 | Msa0352040:CDS |
| TAGTCTTAAAGGTGATGTGA+TGG | 0.597362 | 3_1:-19699490 | Msa0352040:CDS |
| AAACTACTTGAACAATGCAT+AGG | 0.597371 | 3_1:+19699146 | None:intergenic |
| ATGGCTTTCAAGAAACCAGT+AGG | 0.605558 | 3_1:-19699594 | Msa0352040:CDS |
| TGGTAGTTTCCTCACTCCAA+AGG | 0.606493 | 3_1:-19699349 | Msa0352040:CDS |
| TTAGTATTAGCAAACTTAGG+TGG | 0.607623 | 3_1:+19699555 | None:intergenic |
| GCATGCTGGTGGAAAGGAAG+TGG | 0.616381 | 3_1:-19699316 | Msa0352040:CDS |
| TGTATTGTATGTGTCTGCCA+TGG | 0.617683 | 3_1:-19699369 | Msa0352040:CDS |
| TGTGATGCATGCTGGTGGAA+AGG | 0.617870 | 3_1:-19699322 | Msa0352040:CDS |
| GTGGCAGATTCAGAGCTACA+TGG | 0.626711 | 3_1:-19701333 | Msa0352040:intron |
| TCACAAACTCCTTTGGAGTG+AGG | 0.626847 | 3_1:+19699340 | None:intergenic |
| TCTCTCTAAAGATGGCACAA+AGG | 0.638446 | 3_1:+19701416 | None:intergenic |
| AAAAGAGAGGCATAGAAGTG+TGG | 0.640430 | 3_1:-19701352 | Msa0352040:CDS |
| GGATAATGTTGCTAAAAGAG+AGG | 0.645846 | 3_1:-19701365 | Msa0352040:CDS |
| GAGTTTGTGATGCATGCTGG+TGG | 0.651077 | 3_1:-19699327 | Msa0352040:CDS |
| CTTTAAGACTACAATAGTCG+GGG | 0.667470 | 3_1:+19699502 | None:intergenic |
| TTGGAGTGAGGAAACTACCA+TGG | 0.693233 | 3_1:+19699352 | None:intergenic |
| CAAATGGGAAGCGAATAGAA+GGG | 0.736924 | 3_1:-19699422 | Msa0352040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTCATTATTATTATTTC+TGG | - | chr3_1:19699539-19699558 | Msa0352040:CDS | 15.0% |
| !! | ATTAAAATAAGAAGGAAAAT+AGG | + | chr3_1:19700307-19700326 | None:intergenic | 15.0% |
| !! | TATATATGATGATAACAAAT+AGG | - | chr3_1:19700366-19700385 | Msa0352040:intron | 15.0% |
| !! | ATAATGACATTATCAATATT+AGG | - | chr3_1:19700551-19700570 | Msa0352040:intron | 15.0% |
| !!! | TCTTCTATTTATTTTTCATA+TGG | - | chr3_1:19701289-19701308 | Msa0352040:intron | 15.0% |
| !! | ACAAACAAAAAAGTTAAAAG+AGG | + | chr3_1:19699136-19699155 | None:intergenic | 20.0% |
| !!! | ATGTTTTTGCATGATTTTTA+AGG | - | chr3_1:19699168-19699187 | Msa0352040:three_prime_UTR | 20.0% |
| !! | CACACAAATTAAAATTTACA+TGG | + | chr3_1:19699381-19699400 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTTTTTCTTCAG+AGG | - | chr3_1:19699611-19699630 | Msa0352040:CDS | 20.0% |
| !! | ATATTTGATCTCAAATTTGT+TGG | - | chr3_1:19699980-19699999 | Msa0352040:intron | 20.0% |
| !! | TGTTGTAAACCTTTATATTA+CGG | - | chr3_1:19700029-19700048 | Msa0352040:intron | 20.0% |
| !!! | TTTCCTTCTTATTTTAATTG+TGG | - | chr3_1:19700309-19700328 | Msa0352040:intron | 20.0% |
| !!! | TTCCTTCTTATTTTAATTGT+GGG | - | chr3_1:19700310-19700329 | Msa0352040:intron | 20.0% |
| !!! | TATCTTTTCGATAAAAAAAC+TGG | + | chr3_1:19700337-19700356 | None:intergenic | 20.0% |
| !! | AATTTGAAAAATCAAAAGCA+GGG | + | chr3_1:19700735-19700754 | None:intergenic | 20.0% |
| !! | AATCAAGTTTAACTATATTG+CGG | + | chr3_1:19701180-19701199 | None:intergenic | 20.0% |
| !! | AATTTCAATTAGTTCAATCA+CGG | + | chr3_1:19701320-19701339 | None:intergenic | 20.0% |
| !! | ATTGAAATTATTGAATCATC+TGG | - | chr3_1:19701331-19701350 | Msa0352040:intron | 20.0% |
| !! | TTAATCAAGAAAAATGTTAC+CGG | + | chr3_1:19701377-19701396 | None:intergenic | 20.0% |
| ! | AAAGATATACAAACCAGAAT+AGG | + | chr3_1:19699062-19699081 | None:intergenic | 25.0% |
| ! | TTCTCAAATTATTATCTGTG+TGG | + | chr3_1:19699235-19699254 | None:intergenic | 25.0% |
| !!! | TGTACTTGCATTACTTTTTT+TGG | - | chr3_1:19699408-19699427 | Msa0352040:CDS | 25.0% |
| !!! | TTCCTCAGATTTTTTTTTCA+AGG | - | chr3_1:19699438-19699457 | Msa0352040:CDS | 25.0% |
| !!! | TCCTCAGATTTTTTTTTCAA+GGG | - | chr3_1:19699439-19699458 | Msa0352040:CDS | 25.0% |
| ! | TTAAAACCAAAGAGAAAATG+AGG | + | chr3_1:19699487-19699506 | None:intergenic | 25.0% |
| !!! | CATTTTCTCTTTGGTTTTAA+TGG | - | chr3_1:19699487-19699506 | Msa0352040:CDS | 25.0% |
| !!! | TTTTTTCTTCAGAGGTTTTA+TGG | - | chr3_1:19699619-19699638 | Msa0352040:CDS | 25.0% |
| !! | GAAATATTTCTGTGTCAAAT+TGG | - | chr3_1:19699755-19699774 | Msa0352040:intron | 25.0% |
| ! | GTGAAAATTAGAATGAGTTA+AGG | + | chr3_1:19699923-19699942 | None:intergenic | 25.0% |
| !! | TGTGTTTTTCCGTAATATAA+AGG | + | chr3_1:19700041-19700060 | None:intergenic | 25.0% |
| !! | CCAAAATATAAAGGATTTTG+AGG | + | chr3_1:19700092-19700111 | None:intergenic | 25.0% |
| !! | CCTCAAAATCCTTTATATTT+TGG | - | chr3_1:19700089-19700108 | Msa0352040:intron | 25.0% |
| ! | CAATTGTAGCCAAAATATAA+AGG | + | chr3_1:19700101-19700120 | None:intergenic | 25.0% |
| !!! | TTATATTTTGGCTACAATTG+TGG | - | chr3_1:19700101-19700120 | Msa0352040:intron | 25.0% |
| !! | TAATACATGTGACTCTTTTA+AGG | + | chr3_1:19700165-19700184 | None:intergenic | 25.0% |
| ! | TCGTATTAAAAACCACTAAA+TGG | - | chr3_1:19700210-19700229 | Msa0352040:intron | 25.0% |
| ! | CGTATTAAAAACCACTAAAT+GGG | - | chr3_1:19700211-19700230 | Msa0352040:intron | 25.0% |
| !! | ATTATTTAAGACCCATTTAG+TGG | + | chr3_1:19700225-19700244 | None:intergenic | 25.0% |
| ! | ACGATGTAAATACAAACTAA+GGG | + | chr3_1:19700514-19700533 | None:intergenic | 25.0% |
| ! | AACGATGTAAATACAAACTA+AGG | + | chr3_1:19700515-19700534 | None:intergenic | 25.0% |
| !!! | TTAGTTTGTATTTACATCGT+TGG | - | chr3_1:19700514-19700533 | Msa0352040:intron | 25.0% |
| ! | CAATTTGAAAAATCAAAAGC+AGG | + | chr3_1:19700736-19700755 | None:intergenic | 25.0% |
| ! | AAATTGTTATCCTACATGTT+TGG | - | chr3_1:19700750-19700769 | Msa0352040:intron | 25.0% |
| !! | ATACTCAAATTTCTAAGAAC+AGG | - | chr3_1:19700890-19700909 | Msa0352040:intron | 25.0% |
| !! | TATGAGTCATGACAAATTTT+CGG | - | chr3_1:19700968-19700987 | Msa0352040:intron | 25.0% |
| ! | AAAAAACAGAACAAATTTGG+AGG | - | chr3_1:19701063-19701082 | Msa0352040:intron | 25.0% |
| ! | TTAACCAATGTTGTAAAAAC+AGG | - | chr3_1:19701103-19701122 | Msa0352040:intron | 25.0% |
| ! | AAACAGCTAAGAAATTTGAA+AGG | + | chr3_1:19701432-19701451 | None:intergenic | 25.0% |
| ! | AATTAGGATGAAAAGAAGTT+AGG | + | chr3_1:19701485-19701504 | None:intergenic | 25.0% |
| ! | TTCATATGTGACACATATAT+AGG | - | chr3_1:19701511-19701530 | Msa0352040:CDS | 25.0% |
| ! | TGTTTAGTATTAGCAAACTT+AGG | + | chr3_1:19701649-19701668 | None:intergenic | 25.0% |
| ! | AAACTAAACTAAGTCAAAGA+TGG | + | chr3_1:19702022-19702041 | None:intergenic | 25.0% |
| !! | GAGTGTCTGTTTTTCATATA+AGG | - | chr3_1:19699352-19699371 | Msa0352040:CDS | 30.0% |
| AAGTAATGCAAGTACAAGTT+AGG | + | chr3_1:19699404-19699423 | None:intergenic | 30.0% | |
| TCCCTTGAAAAAAAAATCTG+AGG | + | chr3_1:19699443-19699462 | None:intergenic | 30.0% | |
| ! | GATTTTCCTCATTTTCTCTT+TGG | - | chr3_1:19699478-19699497 | Msa0352040:CDS | 30.0% |
| !!! | TTTCTCTTTGGTTTTAATGG+AGG | - | chr3_1:19699490-19699509 | Msa0352040:CDS | 30.0% |
| AACTAGAAAGCTTAAGAGTA+AGG | + | chr3_1:19699675-19699694 | None:intergenic | 30.0% | |
| !!! | ACTCTTAAGCTTTCTAGTTT+TGG | - | chr3_1:19699676-19699695 | Msa0352040:intron | 30.0% |
| !!! | TTCTAGTTTTGGTGAAAATG+TGG | - | chr3_1:19699687-19699706 | Msa0352040:intron | 30.0% |
| ACGGAAAAACACAAAAAATG+TGG | - | chr3_1:19700048-19700067 | Msa0352040:intron | 30.0% | |
| ! | AAATGTGGTTGATATTGTTG+CGG | - | chr3_1:19700063-19700082 | Msa0352040:intron | 30.0% |
| !!! | CTTTAGTTTTACTACGATTG+TGG | + | chr3_1:19700139-19700158 | None:intergenic | 30.0% |
| ! | ATGATCAGAGTACTTGTATA+AGG | - | chr3_1:19700261-19700280 | Msa0352040:intron | 30.0% |
| ! | TGATCAGAGTACTTGTATAA+GGG | - | chr3_1:19700262-19700281 | Msa0352040:intron | 30.0% |
| GAAGGAAAATAGGTAAAAGT+TGG | + | chr3_1:19700297-19700316 | None:intergenic | 30.0% | |
| GTCCCACAATTAAAATAAGA+AGG | + | chr3_1:19700315-19700334 | None:intergenic | 30.0% | |
| ATAAAGACACCAACCTATTA+AGG | + | chr3_1:19700421-19700440 | None:intergenic | 30.0% | |
| !! | AATAGGTTGGTGTCTTTATT+AGG | - | chr3_1:19700422-19700441 | Msa0352040:intron | 30.0% |
| AAAAGATACTGATACTGTGA+AGG | - | chr3_1:19700577-19700596 | Msa0352040:intron | 30.0% | |
| !!! | GAAGGTTTTTTACATAGCTT+TGG | - | chr3_1:19700595-19700614 | Msa0352040:intron | 30.0% |
| TGCTACAAAATGTGATATTG+CGG | + | chr3_1:19700675-19700694 | None:intergenic | 30.0% | |
| !! | GTTAGAATGGCTCTAAATTA+CGG | + | chr3_1:19700713-19700732 | None:intergenic | 30.0% |
| TCTAAGAACAGGAACATAAA+TGG | - | chr3_1:19700901-19700920 | Msa0352040:intron | 30.0% | |
| CTGAGTTATCAAAAGACATA+TGG | - | chr3_1:19701018-19701037 | Msa0352040:intron | 30.0% | |
| GGGAAAAAACAGAACAAATT+TGG | - | chr3_1:19701060-19701079 | Msa0352040:intron | 30.0% | |
| ATTGGTTAACACTCATAACA+TGG | + | chr3_1:19701092-19701111 | None:intergenic | 30.0% | |
| TAGTTAAACTTGATTGAACC+AGG | - | chr3_1:19701185-19701204 | Msa0352040:intron | 30.0% | |
| GAAATTATTGAATCATCTGG+AGG | - | chr3_1:19701334-19701353 | Msa0352040:CDS | 30.0% | |
| CACATATGAATGCATCAATT+AGG | + | chr3_1:19701501-19701520 | None:intergenic | 30.0% | |
| ! | CTTGGTTGATATCTGAAATT+TGG | + | chr3_1:19701569-19701588 | None:intergenic | 30.0% |
| ATATCAACCAAGCATGAAAA+TGG | - | chr3_1:19701577-19701596 | Msa0352040:intron | 30.0% | |
| TTAGTATTAGCAAACTTAGG+TGG | + | chr3_1:19701646-19701665 | None:intergenic | 30.0% | |
| !! | ACCTTTAAGACTACAATAGT+CGG | + | chr3_1:19701701-19701720 | None:intergenic | 30.0% |
| AAAACAGTGATATGCTTCAT+TGG | + | chr3_1:19701913-19701932 | None:intergenic | 30.0% | |
| TCGTCTTTGTTAGAATGTAA+AGG | - | chr3_1:19701978-19701997 | Msa0352040:intron | 30.0% | |
| TGTTAGAATGTAAAGGTAAG+TGG | - | chr3_1:19701985-19702004 | Msa0352040:intron | 30.0% | |
| AAACTACTTGAACAATGCAT+AGG | + | chr3_1:19702055-19702074 | None:intergenic | 30.0% | |
| GTGAAAATGTGGAAGAAAAG+AGG | - | chr3_1:19699698-19699717 | Msa0352040:intron | 35.0% | |
| ATAAGGTCATCATCAATTGC+TGG | - | chr3_1:19699724-19699743 | Msa0352040:intron | 35.0% | |
| ATTATCCTTCCACTATCAAC+TGG | + | chr3_1:19699820-19699839 | None:intergenic | 35.0% | |
| GGATAATGTTGCTAAAAGAG+AGG | - | chr3_1:19699833-19699852 | Msa0352040:intron | 35.0% | |
| TGTTGGACCATGTTAAATTG+TGG | - | chr3_1:19699997-19700016 | Msa0352040:intron | 35.0% | |
| ACCATGTTAAATTGTGGTTG+CGG | - | chr3_1:19700003-19700022 | Msa0352040:intron | 35.0% | |
| CTAAATTACGGTTGTAACTG+TGG | + | chr3_1:19700701-19700720 | None:intergenic | 35.0% | |
| AATCAAAAGCAGGGTTAGAA+TGG | + | chr3_1:19700726-19700745 | None:intergenic | 35.0% | |
| CAACATGATACCAAACATGT+AGG | + | chr3_1:19700763-19700782 | None:intergenic | 35.0% | |
| CTACATGTTTGGTATCATGT+TGG | - | chr3_1:19700761-19700780 | Msa0352040:intron | 35.0% | |
| CATTAATCGCCAATAACACT+AGG | + | chr3_1:19700862-19700881 | None:intergenic | 35.0% | |
| AGAACAGGAACATAAATGGT+TGG | - | chr3_1:19700905-19700924 | Msa0352040:intron | 35.0% | |
| GAACAGGAACATAAATGGTT+GGG | - | chr3_1:19700906-19700925 | Msa0352040:intron | 35.0% | |
| GACTCATATCTAACAAAAGC+TGG | + | chr3_1:19700956-19700975 | None:intergenic | 35.0% | |
| AACTATATTGCGGTACAACT+GGG | + | chr3_1:19701170-19701189 | None:intergenic | 35.0% | |
| TAACTATATTGCGGTACAAC+TGG | + | chr3_1:19701171-19701190 | None:intergenic | 35.0% | |
| !! | TTTGAAAGGCGTCTCAAAAT+CGG | + | chr3_1:19701418-19701437 | None:intergenic | 35.0% |
| ACTCCTTCAGATGAATATGT+TGG | + | chr3_1:19701538-19701557 | None:intergenic | 35.0% | |
| ! | CATTGAACCATTTTCATGCT+TGG | + | chr3_1:19701587-19701606 | None:intergenic | 35.0% |
| CAAGCATGAAAATGGTTCAA+TGG | - | chr3_1:19701585-19701604 | Msa0352040:intron | 35.0% | |
| !! | CTTTAAGACTACAATAGTCG+GGG | + | chr3_1:19701699-19701718 | None:intergenic | 35.0% |
| !! | CCTTTAAGACTACAATAGTC+GGG | + | chr3_1:19701700-19701719 | None:intergenic | 35.0% |
| ! | TAGTCTTAAAGGTGATGTGA+TGG | - | chr3_1:19701708-19701727 | Msa0352040:intron | 35.0% |
| AAGGGTTTCTGTACAAGTAT+AGG | - | chr3_1:19701794-19701813 | Msa0352040:intron | 35.0% | |
| TTTCTGTACAAGTATAGGTC+TGG | - | chr3_1:19701799-19701818 | Msa0352040:intron | 35.0% | |
| !! | AGTCTCATTTTAGAGATCGA+CGG | - | chr3_1:19701936-19701955 | Msa0352040:intron | 35.0% |
| !! | TTCATGAGTCGATTTTTCGA+TGG | + | chr3_1:19702094-19702113 | None:intergenic | 35.0% |
| !! | ATTTCTGAAATGCCTCTAAG+TGG | - | chr3_1:19702134-19702153 | Msa0352040:intron | 35.0% |
| !! | AAAACTTGTTAGCCACTTAG+AGG | + | chr3_1:19702149-19702168 | None:intergenic | 35.0% |
| ATCAAGTGTCTGTGTTTCAC+AGG | + | chr3_1:19699197-19699216 | None:intergenic | 40.0% | |
| ATCAATGCGTGTTTGACACT+GGG | - | chr3_1:19699313-19699332 | Msa0352040:CDS | 40.0% | |
| ACAGACACTCCTTGAATTAG+AGG | + | chr3_1:19699342-19699361 | None:intergenic | 40.0% | |
| TGGAAGAAAAGAGGCTGATA+AGG | - | chr3_1:19699707-19699726 | Msa0352040:intron | 40.0% | |
| TCATCAATTGCTGGAGAGAT+AGG | - | chr3_1:19699733-19699752 | Msa0352040:intron | 40.0% | |
| ! | TCTCTCTAAAGATGGCACAA+AGG | + | chr3_1:19699785-19699804 | None:intergenic | 40.0% |
| ! | GAGCAAGATCTCTCTAAAGA+TGG | + | chr3_1:19699793-19699812 | None:intergenic | 40.0% |
| ! | AAAAGAGAGGCATAGAAGTG+TGG | - | chr3_1:19699846-19699865 | Msa0352040:intron | 40.0% |
| ACCGCAACCACAATTTAACA+TGG | + | chr3_1:19700007-19700026 | None:intergenic | 40.0% | |
| CAACCTATTAAGGATCTCGT+TGG | + | chr3_1:19700411-19700430 | None:intergenic | 40.0% | |
| CAACGAGATCCTTAATAGGT+TGG | - | chr3_1:19700409-19700428 | Msa0352040:intron | 40.0% | |
| CAGCATTACATCTGCAATTG+CGG | - | chr3_1:19700629-19700648 | Msa0352040:intron | 40.0% | |
| !!! | TCATTTTGAAGCGCGTTCAT+CGG | + | chr3_1:19700791-19700810 | None:intergenic | 40.0% |
| TGTTCGTGTCCTAGTGTTAT+TGG | - | chr3_1:19700850-19700869 | Msa0352040:intron | 40.0% | |
| AGACATATGGCTACGAGTTT+AGG | - | chr3_1:19701031-19701050 | Msa0352040:intron | 40.0% | |
| !!! | CGGTCCTGTTTTTACAACAT+TGG | + | chr3_1:19701110-19701129 | None:intergenic | 40.0% |
| GGTCCAACATATTCATCTGA+AGG | - | chr3_1:19701532-19701551 | Msa0352040:CDS | 40.0% | |
| ATGGCTTTCAAGAAACCAGT+AGG | - | chr3_1:19701604-19701623 | Msa0352040:intron | 40.0% | |
| TTTCAAGAAACCAGTAGGCA+AGG | - | chr3_1:19701609-19701628 | Msa0352040:intron | 40.0% | |
| TTAGCAAACTTAGGTGGAAG+TGG | + | chr3_1:19701640-19701659 | None:intergenic | 40.0% | |
| ! | CCCGACTATTGTAGTCTTAA+AGG | - | chr3_1:19701697-19701716 | Msa0352040:intron | 40.0% |
| CTTCTATTCGCTTCCCATTT+GGG | + | chr3_1:19701777-19701796 | None:intergenic | 40.0% | |
| CAAATGGGAAGCGAATAGAA+GGG | - | chr3_1:19701776-19701795 | Msa0352040:intron | 40.0% | |
| TGTATTGTATGTGTCTGCCA+TGG | - | chr3_1:19701829-19701848 | Msa0352040:intron | 40.0% | |
| !! | GTCGATCTCTAAAATGAGAC+TGG | + | chr3_1:19701937-19701956 | None:intergenic | 40.0% |
| TCGACTCATGAAAAACTACG+CGG | - | chr3_1:19702102-19702121 | Msa0352040:intron | 40.0% | |
| CACAGACACTTGATACGACA+TGG | - | chr3_1:19699203-19699222 | Msa0352040:three_prime_UTR | 45.0% | |
| CATCAATGCGTGTTTGACAC+TGG | - | chr3_1:19699312-19699331 | Msa0352040:CDS | 45.0% | |
| ACTGGGACACCTCTAATTCA+AGG | - | chr3_1:19699330-19699349 | Msa0352040:CDS | 45.0% | |
| !! | CAAGGGAGTTCTGAAGTTGA+AGG | - | chr3_1:19699456-19699475 | Msa0352040:CDS | 45.0% |
| !! | TGCTCTCTTCCAGTTGATAG+TGG | - | chr3_1:19699808-19699827 | Msa0352040:intron | 45.0% |
| !! | CTCTTCCAGTTGATAGTGGA+AGG | - | chr3_1:19699812-19699831 | Msa0352040:intron | 45.0% |
| CCTATTAAGGATCTCGTTGG+AGG | + | chr3_1:19700408-19700427 | None:intergenic | 45.0% | |
| CCTCCAACGAGATCCTTAAT+AGG | - | chr3_1:19700405-19700424 | Msa0352040:intron | 45.0% | |
| CAGGAACATAAATGGTTGGG+AGG | - | chr3_1:19700909-19700928 | Msa0352040:intron | 45.0% | |
| GCTACGAGTTTAGGAGCAAT+GGG | - | chr3_1:19701040-19701059 | Msa0352040:intron | 45.0% | |
| AAAAACAGGACCGAACCTGT+CGG | - | chr3_1:19701117-19701136 | Msa0352040:intron | 45.0% | |
| GAACCAGGTTAAACTGCAAC+TGG | - | chr3_1:19701200-19701219 | Msa0352040:intron | 45.0% | |
| TTACCGGAGATCGATACAGT+AGG | + | chr3_1:19701361-19701380 | None:intergenic | 45.0% | |
| AGTGGAATTTCCTTGCCTAC+TGG | + | chr3_1:19701622-19701641 | None:intergenic | 45.0% | |
| CCTTCTATTCGCTTCCCATT+TGG | + | chr3_1:19701778-19701797 | None:intergenic | 45.0% | |
| CCAAATGGGAAGCGAATAGA+AGG | - | chr3_1:19701775-19701794 | Msa0352040:intron | 45.0% | |
| TTGGAGTGAGGAAACTACCA+TGG | + | chr3_1:19701849-19701868 | None:intergenic | 45.0% | |
| TGGTAGTTTCCTCACTCCAA+AGG | - | chr3_1:19701849-19701868 | Msa0352040:intron | 45.0% | |
| !! | TCACAAACTCCTTTGGAGTG+AGG | + | chr3_1:19701861-19701880 | None:intergenic | 45.0% |
| GCATGCATCACAAACTCCTT+TGG | + | chr3_1:19701868-19701887 | None:intergenic | 45.0% | |
| AAGGAGTTTGTGATGCATGC+TGG | - | chr3_1:19701868-19701887 | Msa0352040:intron | 45.0% | |
| !! | CTCATTTTAGAGATCGACGG+TGG | - | chr3_1:19701939-19701958 | Msa0352040:intron | 45.0% |
| !!! | TTAACTTTTAATTTTTTATA+TGG | - | chr3_1:19699947-19699966 | Msa0352040:intron | 5.0% |
| GTGGCAGATTCAGAGCTACA+TGG | - | chr3_1:19699865-19699884 | Msa0352040:intron | 50.0% | |
| GGCTACGAGTTTAGGAGCAA+TGG | - | chr3_1:19701039-19701058 | Msa0352040:intron | 50.0% | |
| !! | ACAGACAGTACCGACAGGTT+CGG | + | chr3_1:19701130-19701149 | None:intergenic | 50.0% |
| !! | AGCAAACAGACAGTACCGAC+AGG | + | chr3_1:19701135-19701154 | None:intergenic | 50.0% |
| TGTCGGTACTGTCTGTTTGC+TGG | - | chr3_1:19701134-19701153 | Msa0352040:intron | 50.0% | |
| ! | GGTACTGTCTGTTTGCTGGT+TGG | - | chr3_1:19701138-19701157 | Msa0352040:intron | 50.0% |
| CTGCCAGTTGCAGTTTAACC+TGG | + | chr3_1:19701206-19701225 | None:intergenic | 50.0% | |
| ! | GGTCCTACTGTATCGATCTC+CGG | - | chr3_1:19701355-19701374 | Msa0352040:CDS | 50.0% |
| ATGCCAAGCGTTACAACGAC+TGG | - | chr3_1:19701745-19701764 | Msa0352040:five_prime_UTR | 50.0% | |
| TCTCCAGTCGTTGTAACGCT+TGG | + | chr3_1:19701751-19701770 | None:intergenic | 50.0% | |
| AGCGTTACAACGACTGGAGA+TGG | - | chr3_1:19701751-19701770 | Msa0352040:five_prime_UTR | 50.0% | |
| GAGTTTGTGATGCATGCTGG+TGG | - | chr3_1:19701871-19701890 | Msa0352040:intron | 50.0% | |
| TGTGATGCATGCTGGTGGAA+AGG | - | chr3_1:19701876-19701895 | Msa0352040:intron | 50.0% | |
| ACGACTGGAGATGGCCCAAA+TGG | - | chr3_1:19701760-19701779 | Msa0352040:intron | 55.0% | |
| CGACTGGAGATGGCCCAAAT+GGG | - | chr3_1:19701761-19701780 | Msa0352040:intron | 55.0% | |
| GCATGCTGGTGGAAAGGAAG+TGG | - | chr3_1:19701882-19701901 | Msa0352040:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 19699050 | 19702170 | 19699050 | ID=Msa0352040;Name=Msa0352040 |
| chr3_1 | mRNA | 19699050 | 19702170 | 19699050 | ID=Msa0352040-mRNA-1;Parent=Msa0352040;Name=Msa0352040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=78|1|1|1|0.66|0.5|4|222|225 |
| chr3_1 | exon | 19699050 | 19699687 | 19699050 | ID=Msa0352040-mRNA-1:exon:4647;Parent=Msa0352040-mRNA-1 |
| chr3_1 | exon | 19701334 | 19701589 | 19701334 | ID=Msa0352040-mRNA-1:exon:4646;Parent=Msa0352040-mRNA-1 |
| chr3_1 | exon | 19701709 | 19701774 | 19701709 | ID=Msa0352040-mRNA-1:exon:4645;Parent=Msa0352040-mRNA-1 |
| chr3_1 | exon | 19702153 | 19702170 | 19702153 | ID=Msa0352040-mRNA-1:exon:4644;Parent=Msa0352040-mRNA-1 |
| chr3_1 | five_prime_UTR | 19702153 | 19702170 | 19702153 | ID=Msa0352040-mRNA-1:five_prime_utr;Parent=Msa0352040-mRNA-1 |
| chr3_1 | five_prime_UTR | 19701715 | 19701774 | 19701715 | ID=Msa0352040-mRNA-1:five_prime_utr;Parent=Msa0352040-mRNA-1 |
| chr3_1 | CDS | 19701709 | 19701714 | 19701709 | ID=Msa0352040-mRNA-1:cds;Parent=Msa0352040-mRNA-1 |
| chr3_1 | CDS | 19701334 | 19701589 | 19701334 | ID=Msa0352040-mRNA-1:cds;Parent=Msa0352040-mRNA-1 |
| chr3_1 | CDS | 19699272 | 19699687 | 19699272 | ID=Msa0352040-mRNA-1:cds;Parent=Msa0352040-mRNA-1 |
| chr3_1 | three_prime_UTR | 19699050 | 19699271 | 19699050 | ID=Msa0352040-mRNA-1:three_prime_utr;Parent=Msa0352040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
