Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446080 | XP_003599003.2 | 89.333 | 225 | 18 | 2 | 1 | 225 | 1 | 219 | 1.61e-144 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446080 | sp|Q94F39|AFP3_ARATH | 34.894 | 235 | 111 | 6 | 14 | 225 | 15 | 230 | 7.22e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446080 | G7IZB8 | 89.333 | 225 | 18 | 2 | 1 | 225 | 1 | 219 | 7.67e-145 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0398840 | Msa0446080 | 0.860801 | 1.602796e-63 | -8.615850e-47 |
| Msa0446080 | Msa0446090 | 0.944020 | 4.188206e-103 | -8.615850e-47 |
| Msa0446080 | Msa0551950 | 0.816801 | 4.586439e-52 | -8.615850e-47 |
| Msa0446080 | Msa0687000 | 0.830371 | 3.048813e-55 | -8.615850e-47 |
| Msa0446080 | Msa0937550 | 0.802614 | 5.159384e-49 | -8.615850e-47 |
| Msa0446080 | Msa1305740 | 0.833647 | 4.730014e-56 | -8.615850e-47 |
| Msa0352040 | Msa0446080 | 0.910310 | 2.162277e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446080 | MtrunA17_Chr3g0086931 | 89.333 | 225 | 18 | 2 | 1 | 225 | 1 | 219 | 1.48e-148 | 412 |
| Msa0446080 | MtrunA17_Chr7g0219081 | 67.606 | 71 | 22 | 1 | 151 | 220 | 287 | 357 | 5.44e-27 | 106 |
| Msa0446080 | MtrunA17_Chr5g0419521 | 64.706 | 68 | 23 | 1 | 156 | 222 | 333 | 400 | 1.34e-23 | 97.4 |
| Msa0446080 | MtrunA17_Chr8g0339431 | 56.338 | 71 | 30 | 1 | 156 | 225 | 225 | 295 | 2.32e-21 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446080 | AT3G29575.3 | 34.894 | 235 | 111 | 6 | 14 | 225 | 15 | 230 | 7.34e-31 | 114 |
| Msa0446080 | AT3G29575.1 | 34.894 | 235 | 111 | 6 | 14 | 225 | 15 | 230 | 7.34e-31 | 114 |
| Msa0446080 | AT3G29575.4 | 34.894 | 235 | 111 | 6 | 14 | 225 | 15 | 230 | 7.34e-31 | 114 |
| Msa0446080 | AT3G07255.1 | 54.412 | 68 | 31 | 0 | 158 | 225 | 226 | 293 | 1.82e-23 | 95.9 |
| Msa0446080 | AT1G13740.1 | 51.546 | 97 | 42 | 3 | 129 | 220 | 245 | 341 | 1.08e-22 | 94.7 |
| Msa0446080 | AT1G69260.1 | 62.500 | 64 | 23 | 1 | 158 | 220 | 273 | 336 | 9.39e-22 | 92.0 |
| Msa0446080 | AT3G02140.1 | 31.618 | 272 | 129 | 9 | 5 | 220 | 42 | 312 | 3.83e-17 | 79.0 |
| Msa0446080 | AT4G28910.3 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 2.10e-12 | 66.2 |
| Msa0446080 | AT4G28910.1 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 2.10e-12 | 66.2 |
| Msa0446080 | AT4G28910.2 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 2.10e-12 | 66.2 |
Find 68 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGACTATTGTAGTCTTAA+AGG | 0.159724 | 3_3:-21337896 | Msa0446080:CDS |
| CTTGGTTGATATCTGAAATT+TGG | 0.160083 | 3_3:+21338027 | None:intergenic |
| TATCCTCATAATTCCTATTC+TGG | 0.225106 | 3_3:-21340528 | Msa0446080:intron |
| CCTTCTATTCGCTTCCCATT+TGG | 0.252102 | 3_3:+21337818 | None:intergenic |
| GAAATATTTCTGTGTCAAAT+TGG | 0.280175 | 3_3:-21339838 | Msa0446080:CDS |
| CTTCTATTCGCTTCCCATTT+GGG | 0.304576 | 3_3:+21337819 | None:intergenic |
| AAAACTTGTTAGCCACTTAG+AGG | 0.320679 | 3_3:+21337447 | None:intergenic |
| ATATCAACCAAGCATGAAAA+TGG | 0.354593 | 3_3:-21338016 | Msa0446080:CDS |
| CCAAATGGGAAGCGAATAGA+AGG | 0.361905 | 3_3:-21337818 | Msa0446080:CDS |
| TGCTCTCTTCCAGTTGATAG+TGG | 0.385553 | 3_3:-21339785 | Msa0446080:CDS |
| AAAACAGTGATATGCTTCAT+TGG | 0.397580 | 3_3:+21337683 | None:intergenic |
| ATTATCCTTCCACTATCAAC+TGG | 0.442082 | 3_3:+21339776 | None:intergenic |
| ACGACTGGAGATGGCCCAAA+TGG | 0.442097 | 3_3:-21337833 | Msa0446080:CDS |
| AGTGGAATTTCCTTGCCTAC+TGG | 0.445192 | 3_3:+21337974 | None:intergenic |
| AAGTAGAAAGCTTAAGAGTA+AGG | 0.445299 | 3_3:+21339921 | None:intergenic |
| AAAGATATACAAACCAGAAT+AGG | 0.449287 | 3_3:+21340515 | None:intergenic |
| TCATCAATTGCTGGAGAGAT+AGG | 0.451851 | 3_3:-21339860 | Msa0446080:CDS |
| GCATGCATCACAAACTCCTT+TGG | 0.454512 | 3_3:+21337728 | None:intergenic |
| TGTTAGAATGTAAAGGTAAG+TGG | 0.458444 | 3_3:-21337608 | Msa0446080:three_prime_UTR |
| ACTCCTTCAGATGAATATCT+TGG | 0.463375 | 3_3:+21338058 | None:intergenic |
| CAAGGGAGTTCTTTAGTTGA+AGG | 0.466050 | 3_3:-21340142 | Msa0446080:five_prime_UTR |
| ACTCTTAAGCTTTCTACTTG+TGG | 0.472319 | 3_3:-21339917 | Msa0446080:CDS |
| TGGAAGAAAAGAGGTTGATA+AGG | 0.482456 | 3_3:-21339886 | Msa0446080:CDS |
| AAACTAAACTAAGTCAAAGA+TGG | 0.482680 | 3_3:+21337574 | None:intergenic |
| CCTTTAAGACTACAATAGTC+GGG | 0.484073 | 3_3:+21337896 | None:intergenic |
| TTAGAAGAAAGAAGAGAGGA+AGG | 0.484530 | 3_3:+21340671 | None:intergenic |
| TCGTCTTTGTTAGAATGTAA+AGG | 0.495851 | 3_3:-21337615 | Msa0446080:three_prime_UTR |
| CAAGCATGAAAATGGTTCAA+TGG | 0.498361 | 3_3:-21338008 | Msa0446080:CDS |
| TTAGCAAACTTAGGTGGAAG+TGG | 0.503620 | 3_3:+21337956 | None:intergenic |
| TGTTTAGTATTAGCAAACTT+AGG | 0.505715 | 3_3:+21337947 | None:intergenic |
| GTCGATCTCTAAAATGAGAC+TGG | 0.510276 | 3_3:+21337659 | None:intergenic |
| AAACCAGAATAGGAATTATG+AGG | 0.510655 | 3_3:+21340525 | None:intergenic |
| ATAAGGTCATCATCAATTGC+TGG | 0.511069 | 3_3:-21339869 | Msa0446080:CDS |
| AAGGGTTTCTGTACAAGTAT+AGG | 0.514024 | 3_3:-21337799 | Msa0446080:CDS |
| ACCTTTAAGACTACAATAGT+CGG | 0.514274 | 3_3:+21337895 | None:intergenic |
| TTTCTGTACAAGTATAGGTC+TGG | 0.514901 | 3_3:-21337794 | Msa0446080:CDS |
| TCTCCAGTCGTTGTAACGCT+TGG | 0.516896 | 3_3:+21337845 | None:intergenic |
| ATGCCAAGCGTTACAACGAC+TGG | 0.521031 | 3_3:-21337848 | Msa0446080:CDS |
| GAAGTTAGAAGAAAGAAGAG+AGG | 0.521700 | 3_3:+21340667 | None:intergenic |
| CGACTGGAGATGGCCCAAAT+GGG | 0.526168 | 3_3:-21337832 | Msa0446080:CDS |
| TTAAAACCTAAGAGAAAATG+AGG | 0.529486 | 3_3:+21340114 | None:intergenic |
| GAGCAAGATCTCTCTAAAGA+TGG | 0.534736 | 3_3:+21339803 | None:intergenic |
| CTCTTCCAGTTGATAGTGGA+AGG | 0.540775 | 3_3:-21339781 | Msa0446080:CDS |
| TTCTACTTGTGGTGAAAATG+TGG | 0.542872 | 3_3:-21339906 | Msa0446080:CDS |
| AAAATATAGAAAATTGAAGA+AGG | 0.546112 | 3_3:+21340638 | None:intergenic |
| AGCGTTACAACGACTGGAGA+TGG | 0.557678 | 3_3:-21337842 | Msa0446080:CDS |
| GGTCCAAGATATTCATCTGA+AGG | 0.575615 | 3_3:-21338061 | Msa0446080:CDS |
| AAGGAGTTTGTGATGCATGC+TGG | 0.584880 | 3_3:-21337725 | Msa0446080:CDS |
| GTGAAAATGTGGAAGAAAAG+AGG | 0.586785 | 3_3:-21339895 | Msa0446080:CDS |
| ATTTCTGAAATGCCTCTAAG+TGG | 0.587070 | 3_3:-21337459 | Msa0446080:three_prime_UTR |
| TTTCAAGAAACCAGTAGGCA+AGG | 0.595224 | 3_3:-21337984 | Msa0446080:CDS |
| TAGTCTTAAAGGTGATGTGA+TGG | 0.597362 | 3_3:-21337885 | Msa0446080:CDS |
| AAACTACTTGAACAATGCAT+AGG | 0.597371 | 3_3:+21337541 | None:intergenic |
| ATGGCTTTCAAGAAACCAGT+AGG | 0.605558 | 3_3:-21337989 | Msa0446080:CDS |
| TGGTAGTTTCCTCACTCCAA+AGG | 0.606493 | 3_3:-21337744 | Msa0446080:CDS |
| TTAGTATTAGCAAACTTAGG+TGG | 0.607623 | 3_3:+21337950 | None:intergenic |
| GCATGCTGGTGGAAAGGAAG+TGG | 0.616381 | 3_3:-21337711 | Msa0446080:CDS |
| TGTATTGTATGTGTCTGCCA+TGG | 0.617683 | 3_3:-21337764 | Msa0446080:CDS |
| TGTGATGCATGCTGGTGGAA+AGG | 0.617870 | 3_3:-21337717 | Msa0446080:CDS |
| GTGGCAGATTCAGAGCTACA+TGG | 0.626711 | 3_3:-21339728 | Msa0446080:intron |
| TCACAAACTCCTTTGGAGTG+AGG | 0.626847 | 3_3:+21337735 | None:intergenic |
| TCTCTCTAAAGATGGCACAA+AGG | 0.638446 | 3_3:+21339811 | None:intergenic |
| AAAAGAGAGGCATAGAAGTG+TGG | 0.640430 | 3_3:-21339747 | Msa0446080:CDS |
| GGATAATGTTGCTAAAAGAG+AGG | 0.645846 | 3_3:-21339760 | Msa0446080:CDS |
| GAGTTTGTGATGCATGCTGG+TGG | 0.651077 | 3_3:-21337722 | Msa0446080:CDS |
| CTTTAAGACTACAATAGTCG+GGG | 0.667470 | 3_3:+21337897 | None:intergenic |
| TTGGAGTGAGGAAACTACCA+TGG | 0.693233 | 3_3:+21337747 | None:intergenic |
| CAAATGGGAAGCGAATAGAA+GGG | 0.736924 | 3_3:-21337817 | Msa0446080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTCATTATTATTATTTT+AGG | - | chr3_3:21338065-21338084 | Msa0446080:intron | 10.0% |
| !! | AAAATATAGAAAATTGAAGA+AGG | + | chr3_3:21337489-21337508 | None:intergenic | 15.0% |
| !!! | ATATTTTTGCATGATTTTTA+AGG | - | chr3_3:21337712-21337731 | Msa0446080:CDS | 15.0% |
| !!! | TTTTTTTTGTTTTTTTTCAG+AGG | - | chr3_3:21338142-21338161 | Msa0446080:intron | 15.0% |
| !! | ATTAAAATAAGAAGGAAAAT+AGG | + | chr3_3:21338838-21338857 | None:intergenic | 15.0% |
| !! | ATAATGACATTATCAATATT+AGG | - | chr3_3:21339081-21339100 | Msa0446080:intron | 15.0% |
| !!! | TCTTCTATTTATTTTTCATA+TGG | - | chr3_3:21339825-21339844 | Msa0446080:CDS | 15.0% |
| !! | ACAAACAAAAAAGTTAAAAG+AGG | + | chr3_3:21337686-21337705 | None:intergenic | 20.0% |
| !! | GACACAAATTAAAATTTACA+TGG | + | chr3_3:21337909-21337928 | None:intergenic | 20.0% |
| !! | ATATTTGATCTCAAATTTGT+TGG | - | chr3_3:21338511-21338530 | Msa0446080:intron | 20.0% |
| !! | TGTTGTAAACCTTTATATTA+CGG | - | chr3_3:21338560-21338579 | Msa0446080:intron | 20.0% |
| !!! | TTTCCTTCTTATTTTAATTG+TGG | - | chr3_3:21338840-21338859 | Msa0446080:intron | 20.0% |
| !!! | TTCCTTCTTATTTTAATTGT+GGG | - | chr3_3:21338841-21338860 | Msa0446080:intron | 20.0% |
| !! | TATATACGATGATAACAAAT+AGG | - | chr3_3:21338896-21338915 | Msa0446080:intron | 20.0% |
| !! | AATTTGAAAAATCAAAAGCA+GGG | + | chr3_3:21339265-21339284 | None:intergenic | 20.0% |
| !! | AATCAAGTTTAACTATATTG+CGG | + | chr3_3:21339710-21339729 | None:intergenic | 20.0% |
| !! | AATTTCAATTAGTTCAATCA+CGG | + | chr3_3:21339856-21339875 | None:intergenic | 20.0% |
| !! | ATTGAAATTATTGAATCATC+TGG | - | chr3_3:21339867-21339886 | Msa0446080:CDS | 20.0% |
| !! | TTAATCAAGAAAAATGTTAC+CGG | + | chr3_3:21339913-21339932 | None:intergenic | 20.0% |
| ! | AAAGATATACAAACCAGAAT+AGG | + | chr3_3:21337612-21337631 | None:intergenic | 25.0% |
| !! | CAAATTATTTTCCATGTCAA+TGG | + | chr3_3:21337775-21337794 | None:intergenic | 25.0% |
| ! | TTAAAACCTAAGAGAAAATG+AGG | + | chr3_3:21338013-21338032 | None:intergenic | 25.0% |
| !!! | CATTTTCTCTTAGGTTTTAA+TGG | - | chr3_3:21338013-21338032 | Msa0446080:CDS | 25.0% |
| !!! | GTTTTTTTTCAGAGGTTTTA+TGG | - | chr3_3:21338150-21338169 | Msa0446080:intron | 25.0% |
| !! | GAAATATTTCTGTGTCAAAT+TGG | - | chr3_3:21338286-21338305 | Msa0446080:intron | 25.0% |
| ! | GTGAAAATTAGAATGAGTTA+AGG | + | chr3_3:21338454-21338473 | None:intergenic | 25.0% |
| !! | TGTGTTTTTCCGTAATATAA+AGG | + | chr3_3:21338572-21338591 | None:intergenic | 25.0% |
| !! | CCAAAATATAAAGGATTTTG+AGG | + | chr3_3:21338623-21338642 | None:intergenic | 25.0% |
| !! | CCTCAAAATCCTTTATATTT+TGG | - | chr3_3:21338620-21338639 | Msa0446080:intron | 25.0% |
| ! | CAATTGTAGCCAAAATATAA+AGG | + | chr3_3:21338632-21338651 | None:intergenic | 25.0% |
| !!! | TTATATTTTGGCTACAATTG+TGG | - | chr3_3:21338632-21338651 | Msa0446080:intron | 25.0% |
| ! | TCGTATTAAAAACCACTAAA+TGG | - | chr3_3:21338741-21338760 | Msa0446080:intron | 25.0% |
| ! | CGTATTAAAAACCACTAAAT+GGG | - | chr3_3:21338742-21338761 | Msa0446080:intron | 25.0% |
| !! | ATTATTTAAGACCCATTTAG+TGG | + | chr3_3:21338756-21338775 | None:intergenic | 25.0% |
| !! | CTATCTTTTCGATAAAAAAC+TGG | + | chr3_3:21338868-21338887 | None:intergenic | 25.0% |
| ! | CAATTTGAAAAATCAAAAGC+AGG | + | chr3_3:21339266-21339285 | None:intergenic | 25.0% |
| ! | AAATTGTTATCCTACATGTT+TGG | - | chr3_3:21339280-21339299 | Msa0446080:intron | 25.0% |
| !! | ATACTCAAATTTCTAAGAAC+AGG | - | chr3_3:21339420-21339439 | Msa0446080:intron | 25.0% |
| !! | TATGAGTCATGACAAATTTT+CGG | - | chr3_3:21339498-21339517 | Msa0446080:intron | 25.0% |
| ! | AAAAAACAGAACAAATTTGG+AGG | - | chr3_3:21339593-21339612 | Msa0446080:intron | 25.0% |
| ! | TTAACCAATGTTGTAAAAAC+AGG | - | chr3_3:21339633-21339652 | Msa0446080:intron | 25.0% |
| ! | AAACAGCTAAGAAATTTGAA+AGG | + | chr3_3:21339968-21339987 | None:intergenic | 25.0% |
| ! | AATTAGGATGAAAAGAAGTT+AGG | + | chr3_3:21340016-21340035 | None:intergenic | 25.0% |
| ! | TGTTTAGTATTAGCAAACTT+AGG | + | chr3_3:21340180-21340199 | None:intergenic | 25.0% |
| ! | AAACTAAACTAAGTCAAAGA+TGG | + | chr3_3:21340553-21340572 | None:intergenic | 25.0% |
| ! | AGAATTTTGTGAAGTAGAAG+AGG | + | chr3_3:21337552-21337571 | None:intergenic | 30.0% |
| ATGAGGATAAAAATGTTGCA+GGG | + | chr3_3:21337585-21337604 | None:intergenic | 30.0% | |
| TATGAGGATAAAAATGTTGC+AGG | + | chr3_3:21337586-21337605 | None:intergenic | 30.0% | |
| TATCCTCATAATTCCTATTC+TGG | - | chr3_3:21337596-21337615 | Msa0446080:three_prime_UTR | 30.0% | |
| AAACCAGAATAGGAATTATG+AGG | + | chr3_3:21337602-21337621 | None:intergenic | 30.0% | |
| ATTGAAACACCTCTAATTTG+AGG | - | chr3_3:21337858-21337877 | Msa0446080:CDS | 30.0% | |
| AGTAATGCAAGTACAAGTTA+GGG | + | chr3_3:21337931-21337950 | None:intergenic | 30.0% | |
| AAGTAATGCAAGTACAAGTT+AGG | + | chr3_3:21337932-21337951 | None:intergenic | 30.0% | |
| TGTACTTGCATTACTTTGTT+TGG | - | chr3_3:21337936-21337955 | Msa0446080:CDS | 30.0% | |
| !!! | TTTCCCAGAAGTTTTTTCAA+GGG | - | chr3_3:21337965-21337984 | Msa0446080:CDS | 30.0% |
| ! | GATTTTCCTCATTTTCTCTT+AGG | - | chr3_3:21338004-21338023 | Msa0446080:CDS | 30.0% |
| !! | TTTCTCTTAGGTTTTAATGG+AGG | - | chr3_3:21338016-21338035 | Msa0446080:CDS | 30.0% |
| AAGTAGAAAGCTTAAGAGTA+AGG | + | chr3_3:21338206-21338225 | None:intergenic | 30.0% | |
| ACGGAAAAACACAAAAAATG+TGG | - | chr3_3:21338579-21338598 | Msa0446080:intron | 30.0% | |
| ! | AAATGTGGTTGATATTGTTG+CGG | - | chr3_3:21338594-21338613 | Msa0446080:intron | 30.0% |
| !!! | CTTTAGTTTTACTACGATTG+TGG | + | chr3_3:21338670-21338689 | None:intergenic | 30.0% |
| ! | TAATACAGGTGACTCTTTTA+AGG | + | chr3_3:21338696-21338715 | None:intergenic | 30.0% |
| AGTCATTAAGTGCTTAATAC+AGG | + | chr3_3:21338710-21338729 | None:intergenic | 30.0% | |
| ! | ATGATCAGAGTACTTGTATA+AGG | - | chr3_3:21338792-21338811 | Msa0446080:intron | 30.0% |
| ! | TGATCAGAGTACTTGTATAA+GGG | - | chr3_3:21338793-21338812 | Msa0446080:intron | 30.0% |
| GAAGGAAAATAGGTAAAAGT+TGG | + | chr3_3:21338828-21338847 | None:intergenic | 30.0% | |
| GTCCCACAATTAAAATAAGA+AGG | + | chr3_3:21338846-21338865 | None:intergenic | 30.0% | |
| ATAAAGACACCAACCTATTA+AGG | + | chr3_3:21338951-21338970 | None:intergenic | 30.0% | |
| !! | AATAGGTTGGTGTCTTTATT+AGG | - | chr3_3:21338952-21338971 | Msa0446080:intron | 30.0% |
| ACGATGTAAATACCAACTAA+GGG | + | chr3_3:21339044-21339063 | None:intergenic | 30.0% | |
| AACGATGTAAATACCAACTA+AGG | + | chr3_3:21339045-21339064 | None:intergenic | 30.0% | |
| ! | TTAGTTGGTATTTACATCGT+TGG | - | chr3_3:21339044-21339063 | Msa0446080:intron | 30.0% |
| AAAAGATACTGATACTGTGA+AGG | - | chr3_3:21339107-21339126 | Msa0446080:intron | 30.0% | |
| !!! | GAAGGTTTTTTACATAGCTT+TGG | - | chr3_3:21339125-21339144 | Msa0446080:intron | 30.0% |
| TGCTACAAAATGTGATATTG+CGG | + | chr3_3:21339205-21339224 | None:intergenic | 30.0% | |
| !! | GTTAGAATGGCTCTAAATTA+CGG | + | chr3_3:21339243-21339262 | None:intergenic | 30.0% |
| TCTAAGAACAGGAACATAAA+TGG | - | chr3_3:21339431-21339450 | Msa0446080:intron | 30.0% | |
| CTGAGTTATCAAAAGACATA+TGG | - | chr3_3:21339548-21339567 | Msa0446080:intron | 30.0% | |
| GGGAAAAAACAGAACAAATT+TGG | - | chr3_3:21339590-21339609 | Msa0446080:intron | 30.0% | |
| ATTGGTTAACACTCATAACA+TGG | + | chr3_3:21339622-21339641 | None:intergenic | 30.0% | |
| TAGTTAAACTTGATTGAACC+AGG | - | chr3_3:21339715-21339734 | Msa0446080:intron | 30.0% | |
| GAAATTATTGAATCATCTGG+AGG | - | chr3_3:21339870-21339889 | Msa0446080:CDS | 30.0% | |
| TTCACATGTGACACATATAT+AGG | - | chr3_3:21340042-21340061 | Msa0446080:intron | 30.0% | |
| ! | CTTGGTTGATATCTGAAATT+TGG | + | chr3_3:21340100-21340119 | None:intergenic | 30.0% |
| ATATCAACCAAGCATGAAAA+TGG | - | chr3_3:21340108-21340127 | Msa0446080:intron | 30.0% | |
| TTAGTATTAGCAAACTTAGG+TGG | + | chr3_3:21340177-21340196 | None:intergenic | 30.0% | |
| !! | ACCTTTAAGACTACAATAGT+CGG | + | chr3_3:21340232-21340251 | None:intergenic | 30.0% |
| AAAACAGTGATATGCTTCAT+TGG | + | chr3_3:21340444-21340463 | None:intergenic | 30.0% | |
| TCGTCTTTGTTAGAATGTAA+AGG | - | chr3_3:21340509-21340528 | Msa0446080:intron | 30.0% | |
| TGTTAGAATGTAAAGGTAAG+TGG | - | chr3_3:21340516-21340535 | Msa0446080:intron | 30.0% | |
| AAACTACTTGAACAATGCAT+AGG | + | chr3_3:21340586-21340605 | None:intergenic | 30.0% | |
| TTAGAAGAAAGAAGAGAGGA+AGG | + | chr3_3:21337456-21337475 | None:intergenic | 35.0% | |
| GAAGTTAGAAGAAAGAAGAG+AGG | + | chr3_3:21337460-21337479 | None:intergenic | 35.0% | |
| ATATATGTTGTGTCTGTGTC+AGG | - | chr3_3:21337811-21337830 | Msa0446080:CDS | 35.0% | |
| TATATGTTGTGTCTGTGTCA+GGG | - | chr3_3:21337812-21337831 | Msa0446080:CDS | 35.0% | |
| !!! | CTTTCCCAGAAGTTTTTTCA+AGG | - | chr3_3:21337964-21337983 | Msa0446080:CDS | 35.0% |
| ACTCCCTTGAAAAAACTTCT+GGG | + | chr3_3:21337971-21337990 | None:intergenic | 35.0% | |
| AACTCCCTTGAAAAAACTTC+TGG | + | chr3_3:21337972-21337991 | None:intergenic | 35.0% | |
| ACTCTTAAGCTTTCTACTTG+TGG | - | chr3_3:21338207-21338226 | Msa0446080:intron | 35.0% | |
| TTCTACTTGTGGTGAAAATG+TGG | - | chr3_3:21338218-21338237 | Msa0446080:intron | 35.0% | |
| GTGAAAATGTGGAAGAAAAG+AGG | - | chr3_3:21338229-21338248 | Msa0446080:intron | 35.0% | |
| !! | TGGAAGAAAAGAGGTTGATA+AGG | - | chr3_3:21338238-21338257 | Msa0446080:intron | 35.0% |
| ATAAGGTCATCATCAATTGC+TGG | - | chr3_3:21338255-21338274 | Msa0446080:intron | 35.0% | |
| ATTATCCTTCCACTATCAAC+TGG | + | chr3_3:21338351-21338370 | None:intergenic | 35.0% | |
| GGATAATGTTGCTAAAAGAG+AGG | - | chr3_3:21338364-21338383 | Msa0446080:intron | 35.0% | |
| TGTTGGACCATGTTAAATTG+TGG | - | chr3_3:21338528-21338547 | Msa0446080:intron | 35.0% | |
| ACCATGTTAAATTGTGGTTG+CGG | - | chr3_3:21338534-21338553 | Msa0446080:intron | 35.0% | |
| TGATCTTATTGTCCCTTAGT+TGG | - | chr3_3:21339029-21339048 | Msa0446080:intron | 35.0% | |
| AATCAAAAGCAGGGTTAGAA+TGG | + | chr3_3:21339256-21339275 | None:intergenic | 35.0% | |
| CAACATGATACCAAACATGT+AGG | + | chr3_3:21339293-21339312 | None:intergenic | 35.0% | |
| CTACATGTTTGGTATCATGT+TGG | - | chr3_3:21339291-21339310 | Msa0446080:intron | 35.0% | |
| CATTAATCGCCAATAACACT+AGG | + | chr3_3:21339392-21339411 | None:intergenic | 35.0% | |
| AGAACAGGAACATAAATGGT+TGG | - | chr3_3:21339435-21339454 | Msa0446080:intron | 35.0% | |
| GAACAGGAACATAAATGGTT+GGG | - | chr3_3:21339436-21339455 | Msa0446080:intron | 35.0% | |
| GACTCATATCTAACAAAAGC+TGG | + | chr3_3:21339486-21339505 | None:intergenic | 35.0% | |
| AACTATATTGCGGTACAACT+GGG | + | chr3_3:21339700-21339719 | None:intergenic | 35.0% | |
| TAACTATATTGCGGTACAAC+TGG | + | chr3_3:21339701-21339720 | None:intergenic | 35.0% | |
| !! | TTTGAAAGGCGTCTCAAAAT+CGG | + | chr3_3:21339954-21339973 | None:intergenic | 35.0% |
| CACATGTGAATGCATCAATT+AGG | + | chr3_3:21340032-21340051 | None:intergenic | 35.0% | |
| ACTCCTTCAGATGAATATCT+TGG | + | chr3_3:21340069-21340088 | None:intergenic | 35.0% | |
| ! | CATTGAACCATTTTCATGCT+TGG | + | chr3_3:21340118-21340137 | None:intergenic | 35.0% |
| CAAGCATGAAAATGGTTCAA+TGG | - | chr3_3:21340116-21340135 | Msa0446080:five_prime_UTR | 35.0% | |
| !! | CTTTAAGACTACAATAGTCG+GGG | + | chr3_3:21340230-21340249 | None:intergenic | 35.0% |
| !! | CCTTTAAGACTACAATAGTC+GGG | + | chr3_3:21340231-21340250 | None:intergenic | 35.0% |
| ! | TAGTCTTAAAGGTGATGTGA+TGG | - | chr3_3:21340239-21340258 | Msa0446080:intron | 35.0% |
| AAGGGTTTCTGTACAAGTAT+AGG | - | chr3_3:21340325-21340344 | Msa0446080:intron | 35.0% | |
| TTTCTGTACAAGTATAGGTC+TGG | - | chr3_3:21340330-21340349 | Msa0446080:intron | 35.0% | |
| !! | AGTCTCATTTTAGAGATCGA+CGG | - | chr3_3:21340467-21340486 | Msa0446080:intron | 35.0% |
| !! | TTCATGAGTCGATTTTTCGA+AGG | + | chr3_3:21340625-21340644 | None:intergenic | 35.0% |
| !! | ATTTCTGAAATGCCTCTAAG+TGG | - | chr3_3:21340665-21340684 | Msa0446080:five_prime_UTR | 35.0% |
| !! | AAAACTTGTTAGCCACTTAG+AGG | + | chr3_3:21340680-21340699 | None:intergenic | 35.0% |
| AGGATAAAAATGTTGCAGGG+TGG | + | chr3_3:21337582-21337601 | None:intergenic | 40.0% | |
| ACGACATGAATCCATTGACA+TGG | - | chr3_3:21337761-21337780 | Msa0446080:CDS | 40.0% | |
| CAAGGGAGTTCTTTAGTTGA+AGG | - | chr3_3:21337982-21338001 | Msa0446080:CDS | 40.0% | |
| TCATCAATTGCTGGAGAGAT+AGG | - | chr3_3:21338264-21338283 | Msa0446080:intron | 40.0% | |
| ! | TCTCTCTAAAGATGGCACAA+AGG | + | chr3_3:21338316-21338335 | None:intergenic | 40.0% |
| ! | GAGCAAGATCTCTCTAAAGA+TGG | + | chr3_3:21338324-21338343 | None:intergenic | 40.0% |
| ! | AAAAGAGAGGCATAGAAGTG+TGG | - | chr3_3:21338377-21338396 | Msa0446080:intron | 40.0% |
| ACCGCAACCACAATTTAACA+TGG | + | chr3_3:21338538-21338557 | None:intergenic | 40.0% | |
| CAACCTATTAAGGATCTCGT+TGG | + | chr3_3:21338941-21338960 | None:intergenic | 40.0% | |
| CAACGAGATCCTTAATAGGT+TGG | - | chr3_3:21338939-21338958 | Msa0446080:intron | 40.0% | |
| CAGCATTACATCTGCAATTG+CGG | - | chr3_3:21339159-21339178 | Msa0446080:intron | 40.0% | |
| CTAAATTACGGTTGCAACTG+TGG | + | chr3_3:21339231-21339250 | None:intergenic | 40.0% | |
| !!! | TCATTTTGAAGCGCGTTCAT+CGG | + | chr3_3:21339321-21339340 | None:intergenic | 40.0% |
| TGTTCGTGTCCTAGTGTTAT+TGG | - | chr3_3:21339380-21339399 | Msa0446080:intron | 40.0% | |
| AGACATATGGCTACGAGTTT+AGG | - | chr3_3:21339561-21339580 | Msa0446080:intron | 40.0% | |
| !!! | CGGTCCTGTTTTTACAACAT+TGG | + | chr3_3:21339640-21339659 | None:intergenic | 40.0% |
| GGTCCAAGATATTCATCTGA+AGG | - | chr3_3:21340063-21340082 | Msa0446080:intron | 40.0% | |
| ATGGCTTTCAAGAAACCAGT+AGG | - | chr3_3:21340135-21340154 | Msa0446080:five_prime_UTR | 40.0% | |
| TTTCAAGAAACCAGTAGGCA+AGG | - | chr3_3:21340140-21340159 | Msa0446080:five_prime_UTR | 40.0% | |
| TTAGCAAACTTAGGTGGAAG+TGG | + | chr3_3:21340171-21340190 | None:intergenic | 40.0% | |
| ! | CCCGACTATTGTAGTCTTAA+AGG | - | chr3_3:21340228-21340247 | Msa0446080:intron | 40.0% |
| CTTCTATTCGCTTCCCATTT+GGG | + | chr3_3:21340308-21340327 | None:intergenic | 40.0% | |
| CAAATGGGAAGCGAATAGAA+GGG | - | chr3_3:21340307-21340326 | Msa0446080:intron | 40.0% | |
| TGTATTGTATGTGTCTGCCA+TGG | - | chr3_3:21340360-21340379 | Msa0446080:intron | 40.0% | |
| !! | GTCGATCTCTAAAATGAGAC+TGG | + | chr3_3:21340468-21340487 | None:intergenic | 40.0% |
| TCGACTCATGAAAAACTACG+CGG | - | chr3_3:21340633-21340652 | Msa0446080:five_prime_UTR | 40.0% | |
| ACGGACACTCCTCAAATTAG+AGG | + | chr3_3:21337870-21337889 | None:intergenic | 45.0% | |
| GAGTGTCCGTGTTTCATAGA+AGG | - | chr3_3:21337880-21337899 | Msa0446080:CDS | 45.0% | |
| TGTCCGTGTTTCATAGAAGG+TGG | - | chr3_3:21337883-21337902 | Msa0446080:CDS | 45.0% | |
| TGGCCACCTTCTATGAAACA+CGG | + | chr3_3:21337889-21337908 | None:intergenic | 45.0% | |
| !! | TGCTCTCTTCCAGTTGATAG+TGG | - | chr3_3:21338339-21338358 | Msa0446080:intron | 45.0% |
| !! | CTCTTCCAGTTGATAGTGGA+AGG | - | chr3_3:21338343-21338362 | Msa0446080:intron | 45.0% |
| CCTATTAAGGATCTCGTTGG+AGG | + | chr3_3:21338938-21338957 | None:intergenic | 45.0% | |
| CCTCCAACGAGATCCTTAAT+AGG | - | chr3_3:21338935-21338954 | Msa0446080:intron | 45.0% | |
| CAGGAACATAAATGGTTGGG+AGG | - | chr3_3:21339439-21339458 | Msa0446080:intron | 45.0% | |
| GCTACGAGTTTAGGAGCAAT+GGG | - | chr3_3:21339570-21339589 | Msa0446080:intron | 45.0% | |
| AAAAACAGGACCGAACCTGT+CGG | - | chr3_3:21339647-21339666 | Msa0446080:intron | 45.0% | |
| GAACCAGGTTAAACTGCAAC+TGG | - | chr3_3:21339730-21339749 | Msa0446080:CDS | 45.0% | |
| TTACCGGAGATCGATACAGT+AGG | + | chr3_3:21339897-21339916 | None:intergenic | 45.0% | |
| AGTGGAATTTCCTTGCCTAC+TGG | + | chr3_3:21340153-21340172 | None:intergenic | 45.0% | |
| CCTTCTATTCGCTTCCCATT+TGG | + | chr3_3:21340309-21340328 | None:intergenic | 45.0% | |
| CCAAATGGGAAGCGAATAGA+AGG | - | chr3_3:21340306-21340325 | Msa0446080:intron | 45.0% | |
| TTGGAGTGAGGAAACTACCA+TGG | + | chr3_3:21340380-21340399 | None:intergenic | 45.0% | |
| TGGTAGTTTCCTCACTCCAA+AGG | - | chr3_3:21340380-21340399 | Msa0446080:intron | 45.0% | |
| !! | TCACAAACTCCTTTGGAGTG+AGG | + | chr3_3:21340392-21340411 | None:intergenic | 45.0% |
| GCATGCATCACAAACTCCTT+TGG | + | chr3_3:21340399-21340418 | None:intergenic | 45.0% | |
| AAGGAGTTTGTGATGCATGC+TGG | - | chr3_3:21340399-21340418 | Msa0446080:intron | 45.0% | |
| !! | CTCATTTTAGAGATCGACGG+TGG | - | chr3_3:21340470-21340489 | Msa0446080:intron | 45.0% |
| !!! | TTAACTTTTAATTTTTTATT+TGG | - | chr3_3:21338478-21338497 | Msa0446080:intron | 5.0% |
| GTCTAGTGTCTGTGTTTCGC+AGG | + | chr3_3:21337741-21337760 | None:intergenic | 50.0% | |
| GTGGCAGATTCAGAGCTACA+TGG | - | chr3_3:21338396-21338415 | Msa0446080:intron | 50.0% | |
| GGCTACGAGTTTAGGAGCAA+TGG | - | chr3_3:21339569-21339588 | Msa0446080:intron | 50.0% | |
| !! | ACAGACAGTACCGACAGGTT+CGG | + | chr3_3:21339660-21339679 | None:intergenic | 50.0% |
| !! | AGCAAACAGACAGTACCGAC+AGG | + | chr3_3:21339665-21339684 | None:intergenic | 50.0% |
| TGTCGGTACTGTCTGTTTGC+TGG | - | chr3_3:21339664-21339683 | Msa0446080:intron | 50.0% | |
| ! | GGTACTGTCTGTTTGCTGGT+TGG | - | chr3_3:21339668-21339687 | Msa0446080:intron | 50.0% |
| CTGCCAGTTGCAGTTTAACC+TGG | + | chr3_3:21339736-21339755 | None:intergenic | 50.0% | |
| ! | GGTCCTACTGTATCGATCTC+CGG | - | chr3_3:21339891-21339910 | Msa0446080:CDS | 50.0% |
| ATGCCAAGCGTTACAACGAC+TGG | - | chr3_3:21340276-21340295 | Msa0446080:intron | 50.0% | |
| TCTCCAGTCGTTGTAACGCT+TGG | + | chr3_3:21340282-21340301 | None:intergenic | 50.0% | |
| AGCGTTACAACGACTGGAGA+TGG | - | chr3_3:21340282-21340301 | Msa0446080:intron | 50.0% | |
| GAGTTTGTGATGCATGCTGG+TGG | - | chr3_3:21340402-21340421 | Msa0446080:intron | 50.0% | |
| TGTGATGCATGCTGGTGGAA+AGG | - | chr3_3:21340407-21340426 | Msa0446080:intron | 50.0% | |
| ACGACTGGAGATGGCCCAAA+TGG | - | chr3_3:21340291-21340310 | Msa0446080:intron | 55.0% | |
| CGACTGGAGATGGCCCAAAT+GGG | - | chr3_3:21340292-21340311 | Msa0446080:intron | 55.0% | |
| GCATGCTGGTGGAAAGGAAG+TGG | - | chr3_3:21340413-21340432 | Msa0446080:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 21337445 | 21340701 | 21337445 | ID=Msa0446080;Name=Msa0446080 |
| chr3_3 | mRNA | 21337445 | 21340701 | 21337445 | ID=Msa0446080-mRNA-1;Parent=Msa0446080;Name=Msa0446080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=232|1|1|1|0.66|0.5|4|222|225 |
| chr3_3 | exon | 21337445 | 21338082 | 21337445 | ID=Msa0446080-mRNA-1:exon:4476;Parent=Msa0446080-mRNA-1 |
| chr3_3 | exon | 21339729 | 21339984 | 21339729 | ID=Msa0446080-mRNA-1:exon:4475;Parent=Msa0446080-mRNA-1 |
| chr3_3 | exon | 21340109 | 21340173 | 21340109 | ID=Msa0446080-mRNA-1:exon:4474;Parent=Msa0446080-mRNA-1 |
| chr3_3 | exon | 21340529 | 21340701 | 21340529 | ID=Msa0446080-mRNA-1:exon:4473;Parent=Msa0446080-mRNA-1 |
| chr3_3 | five_prime_UTR | 21340529 | 21340701 | 21340529 | ID=Msa0446080-mRNA-1:five_prime_utr;Parent=Msa0446080-mRNA-1 |
| chr3_3 | five_prime_UTR | 21340115 | 21340173 | 21340115 | ID=Msa0446080-mRNA-1:five_prime_utr;Parent=Msa0446080-mRNA-1 |
| chr3_3 | CDS | 21340109 | 21340114 | 21340109 | ID=Msa0446080-mRNA-1:cds;Parent=Msa0446080-mRNA-1 |
| chr3_3 | CDS | 21339729 | 21339984 | 21339729 | ID=Msa0446080-mRNA-1:cds;Parent=Msa0446080-mRNA-1 |
| chr3_3 | CDS | 21337667 | 21338082 | 21337667 | ID=Msa0446080-mRNA-1:cds;Parent=Msa0446080-mRNA-1 |
| chr3_3 | three_prime_UTR | 21337445 | 21337666 | 21337445 | ID=Msa0446080-mRNA-1:three_prime_utr;Parent=Msa0446080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
