Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398840 | XP_003599003.2 | 88.889 | 225 | 19 | 2 | 1 | 225 | 1 | 219 | 1.52e-143 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398840 | sp|Q94F39|AFP3_ARATH | 34.468 | 235 | 112 | 6 | 14 | 225 | 15 | 230 | 5.12e-29 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398840 | G7IZB8 | 88.889 | 225 | 19 | 2 | 1 | 225 | 1 | 219 | 7.27e-144 | 409 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002380 | Msa0398840 | 0.807014 | 6.215333e-50 | -8.615850e-47 |
| Msa0053110 | Msa0398840 | 0.805746 | 1.150381e-49 | -8.615850e-47 |
| Msa0134130 | Msa0398840 | 0.803673 | 3.116049e-49 | -8.615850e-47 |
| Msa0398840 | Msa0446080 | 0.860801 | 1.602796e-63 | -8.615850e-47 |
| Msa0398840 | Msa0446090 | 0.840253 | 9.716556e-58 | -8.615850e-47 |
| Msa0398840 | Msa0448750 | 0.801678 | 8.038762e-49 | -8.615850e-47 |
| Msa0398840 | Msa0497420 | 0.808752 | 2.653990e-50 | -8.615850e-47 |
| Msa0398840 | Msa0537920 | 0.806063 | 9.867892e-50 | -8.615850e-47 |
| Msa0398840 | Msa0787750 | 0.805522 | 1.281738e-49 | -8.615850e-47 |
| Msa0398840 | Msa0905550 | 0.804717 | 1.889003e-49 | -8.615850e-47 |
| Msa0398840 | Msa0931950 | 0.803514 | 3.361457e-49 | -8.615850e-47 |
| Msa0398840 | Msa0937550 | 0.809672 | 1.685664e-50 | -8.615850e-47 |
| Msa0398840 | Msa1272330 | 0.802068 | 6.685573e-49 | -8.615850e-47 |
| Msa0352040 | Msa0398840 | 0.805870 | 1.083527e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398840 | MtrunA17_Chr3g0086931 | 88.889 | 225 | 19 | 2 | 1 | 225 | 1 | 219 | 1.40e-147 | 409 |
| Msa0398840 | MtrunA17_Chr7g0219081 | 67.606 | 71 | 22 | 1 | 151 | 220 | 287 | 357 | 7.03e-27 | 105 |
| Msa0398840 | MtrunA17_Chr5g0419521 | 64.706 | 68 | 23 | 1 | 156 | 222 | 333 | 400 | 1.51e-23 | 97.4 |
| Msa0398840 | MtrunA17_Chr8g0339431 | 56.338 | 71 | 30 | 1 | 156 | 225 | 225 | 295 | 2.47e-21 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398840 | AT3G29575.3 | 34.468 | 235 | 112 | 6 | 14 | 225 | 15 | 230 | 5.20e-30 | 111 |
| Msa0398840 | AT3G29575.1 | 34.468 | 235 | 112 | 6 | 14 | 225 | 15 | 230 | 5.20e-30 | 111 |
| Msa0398840 | AT3G29575.4 | 34.468 | 235 | 112 | 6 | 14 | 225 | 15 | 230 | 5.20e-30 | 111 |
| Msa0398840 | AT3G07255.1 | 54.412 | 68 | 31 | 0 | 158 | 225 | 226 | 293 | 1.96e-23 | 95.9 |
| Msa0398840 | AT1G13740.1 | 46.226 | 106 | 53 | 2 | 119 | 220 | 236 | 341 | 1.15e-22 | 94.7 |
| Msa0398840 | AT1G69260.1 | 62.500 | 64 | 23 | 1 | 158 | 220 | 273 | 336 | 1.13e-21 | 92.0 |
| Msa0398840 | AT3G02140.1 | 34.946 | 186 | 97 | 5 | 58 | 220 | 128 | 312 | 6.56e-17 | 78.6 |
| Msa0398840 | AT4G28910.3 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 2.12e-12 | 65.9 |
| Msa0398840 | AT4G28910.1 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 2.12e-12 | 65.9 |
| Msa0398840 | AT4G28910.2 | 51.020 | 49 | 24 | 0 | 158 | 206 | 357 | 405 | 2.12e-12 | 65.9 |
Find 66 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGACTATTGTAGTCTTAA+AGG | 0.159724 | 3_2:-20873047 | Msa0398840:CDS |
| CTTGGTTGATATCTGAAATT+TGG | 0.160083 | 3_2:+20873178 | None:intergenic |
| TATTCTCATAATTCCTATTC+TGG | 0.228403 | 3_2:-20875690 | Msa0398840:intron |
| CCTTCTATTCGCTTCCCATT+TGG | 0.252102 | 3_2:+20872969 | None:intergenic |
| AAGAGTAAGGTCTATTTCTT+TGG | 0.270601 | 3_2:+20875092 | None:intergenic |
| GAAATATTTCTGTGTCAAAT+TGG | 0.280175 | 3_2:-20874996 | Msa0398840:CDS |
| CTTCTATTCGCTTCCCATTT+GGG | 0.304576 | 3_2:+20872970 | None:intergenic |
| AAAACTTGTTAGCCACTTAG+AGG | 0.311621 | 3_2:+20872597 | None:intergenic |
| ATATCAACCAAGCATGAAAA+TGG | 0.354593 | 3_2:-20873167 | Msa0398840:CDS |
| CCAAATGGGAAGCGAATAGA+AGG | 0.361905 | 3_2:-20872969 | Msa0398840:CDS |
| TGCTCTCTTCCAGTTGATAG+TGG | 0.385553 | 3_2:-20874943 | Msa0398840:CDS |
| AAAACAGTGATATGCTTCAT+TGG | 0.397580 | 3_2:+20872834 | None:intergenic |
| GAAGAAGAAAGAAGAGAGGA+AGG | 0.432415 | 3_2:+20875833 | None:intergenic |
| ATTATCCTTCCACTATCAAC+TGG | 0.442082 | 3_2:+20874934 | None:intergenic |
| ACGACTGGAGATGGCCCAAA+TGG | 0.442097 | 3_2:-20872984 | Msa0398840:CDS |
| AGTGGAATTTCCTTGCCTAC+TGG | 0.445192 | 3_2:+20873125 | None:intergenic |
| AAAGATATACAAACCAGAAT+AGG | 0.449287 | 3_2:+20875677 | None:intergenic |
| TCATCAATTGCTGGAGAGAT+AGG | 0.451851 | 3_2:-20875018 | Msa0398840:CDS |
| AATTGAAGAAGGTGTTAAGA+AGG | 0.453440 | 3_2:+20875811 | None:intergenic |
| GCATGCATCACAAACTCCTT+TGG | 0.454512 | 3_2:+20872879 | None:intergenic |
| TGTTAGAATGTAAAGGTAAG+TGG | 0.458444 | 3_2:-20872759 | Msa0398840:three_prime_UTR |
| ACTCCTTCAGATGAATATCT+TGG | 0.463375 | 3_2:+20873209 | None:intergenic |
| CAAGGGAGTTCTTTAGTTGA+AGG | 0.466050 | 3_2:-20875292 | Msa0398840:five_prime_UTR |
| ATTGATCTCTAAAATGAGAC+TGG | 0.480692 | 3_2:+20872810 | None:intergenic |
| TGGAAGAAAAGAGGTTGATA+AGG | 0.482456 | 3_2:-20875044 | Msa0398840:CDS |
| CCTTTAAGACTACAATAGTC+GGG | 0.484073 | 3_2:+20873047 | None:intergenic |
| AATCCTATGCATTGTTCAAG+TGG | 0.495190 | 3_2:-20872694 | Msa0398840:three_prime_UTR |
| TCGTCTTTGTTAGAATGTAA+AGG | 0.495851 | 3_2:-20872766 | Msa0398840:three_prime_UTR |
| CAAGCATGAAAATGGTTCAA+TGG | 0.498361 | 3_2:-20873159 | Msa0398840:CDS |
| TTAGCAAACTTAGGTGGAAG+TGG | 0.503620 | 3_2:+20873107 | None:intergenic |
| TGTTTAGTATTAGCAAACTT+AGG | 0.505715 | 3_2:+20873098 | None:intergenic |
| ATAAGGTCATCATCAATTGC+TGG | 0.511069 | 3_2:-20875027 | Msa0398840:CDS |
| AAGGGTTTCTGTACAAGTAT+AGG | 0.514024 | 3_2:-20872950 | Msa0398840:CDS |
| ATTTCTGAATTGCCTCTAAG+TGG | 0.514148 | 3_2:-20872609 | Msa0398840:three_prime_UTR |
| ACCTTTAAGACTACAATAGT+CGG | 0.514274 | 3_2:+20873046 | None:intergenic |
| TTTCTGTACAAGTATAGGTC+TGG | 0.514901 | 3_2:-20872945 | Msa0398840:CDS |
| TCTCCAGTCGTTGTAACGCT+TGG | 0.516896 | 3_2:+20872996 | None:intergenic |
| ATGCCAAGCGTTACAACGAC+TGG | 0.521031 | 3_2:-20872999 | Msa0398840:CDS |
| CGACTGGAGATGGCCCAAAT+GGG | 0.526168 | 3_2:-20872983 | Msa0398840:CDS |
| TTAAAACCAAAGAGAAAATG+AGG | 0.532155 | 3_2:+20875264 | None:intergenic |
| GAGCAAGATCTCTCTAAAGA+TGG | 0.534736 | 3_2:+20874961 | None:intergenic |
| CTCTTCCAGTTGATAGTGGA+AGG | 0.540775 | 3_2:-20874939 | Msa0398840:CDS |
| AAAATATAGAAAATTGAAGA+AGG | 0.546112 | 3_2:+20875800 | None:intergenic |
| AGCGTTACAACGACTGGAGA+TGG | 0.557678 | 3_2:-20872993 | Msa0398840:CDS |
| GGTCCAAGATATTCATCTGA+AGG | 0.575615 | 3_2:-20873212 | Msa0398840:CDS |
| GAAGGAAGAAGAAAGAAGAG+AGG | 0.576386 | 3_2:+20875829 | None:intergenic |
| AAGGAGTTTGTGATGCATGC+TGG | 0.584880 | 3_2:-20872876 | Msa0398840:CDS |
| GTGAAAATGTGGAAGAAAAG+AGG | 0.586785 | 3_2:-20875053 | Msa0398840:CDS |
| TTTCAAGAAACCAGTAGGCA+AGG | 0.595224 | 3_2:-20873135 | Msa0398840:CDS |
| TAGTCTTAAAGGTGATGTGA+TGG | 0.597362 | 3_2:-20873036 | Msa0398840:CDS |
| TGGTAGCTTCCTCACTCCAA+AGG | 0.604321 | 3_2:-20872895 | Msa0398840:CDS |
| ATGGCTTTCAAGAAACCAGT+AGG | 0.605558 | 3_2:-20873140 | Msa0398840:CDS |
| TTAGTATTAGCAAACTTAGG+TGG | 0.607623 | 3_2:+20873101 | None:intergenic |
| GCATGCTGGTGGAAAGGAAG+TGG | 0.616381 | 3_2:-20872862 | Msa0398840:CDS |
| TTGGAGTGAGGAAGCTACCA+TGG | 0.617641 | 3_2:+20872898 | None:intergenic |
| TGTATTGTATGTGTCTGCCA+TGG | 0.617683 | 3_2:-20872915 | Msa0398840:CDS |
| TGTGATGCATGCTGGTGGAA+AGG | 0.617870 | 3_2:-20872868 | Msa0398840:CDS |
| AAACCACTTGAACAATGCAT+AGG | 0.621717 | 3_2:+20872691 | None:intergenic |
| GTGGCAGATTCAGAGCTACA+TGG | 0.626711 | 3_2:-20874886 | Msa0398840:intron |
| TCACAAACTCCTTTGGAGTG+AGG | 0.626847 | 3_2:+20872886 | None:intergenic |
| TCTCTCTAAAGATGGCACAA+AGG | 0.638446 | 3_2:+20874969 | None:intergenic |
| AAAAGAGAGGCATAGAAGTG+TGG | 0.640430 | 3_2:-20874905 | Msa0398840:CDS |
| GGATAATGTTGCTAAAAGAG+AGG | 0.645846 | 3_2:-20874918 | Msa0398840:CDS |
| GAGTTTGTGATGCATGCTGG+TGG | 0.651077 | 3_2:-20872873 | Msa0398840:CDS |
| CTTTAAGACTACAATAGTCG+GGG | 0.667470 | 3_2:+20873048 | None:intergenic |
| CAAATGGGAAGCGAATAGAA+GGG | 0.736924 | 3_2:-20872968 | Msa0398840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTCATTATTATTAATTT+TGG | - | chr3_2:20873227-20873246 | Msa0398840:intron | 10.0% |
| !! | AAAATATAGAAAATTGAAGA+AGG | + | chr3_2:20872639-20872658 | None:intergenic | 15.0% |
| !!! | ATATATTTGCATGATTTTTA+AGG | - | chr3_2:20872864-20872883 | Msa0398840:CDS | 15.0% |
| !! | ATTAAAATAAGAAGGAAAAT+AGG | + | chr3_2:20873995-20874014 | None:intergenic | 15.0% |
| !! | TATATATGATGATAACAAAT+AGG | - | chr3_2:20874053-20874072 | Msa0398840:intron | 15.0% |
| !! | ATAATGACATTATCAATATT+AGG | - | chr3_2:20874238-20874257 | Msa0398840:intron | 15.0% |
| !!! | TCTTCTATTTATTTTTCATA+TGG | - | chr3_2:20874986-20875005 | Msa0398840:CDS | 15.0% |
| !! | CACACAAATTAAAATTTACA+TGG | + | chr3_2:20873071-20873090 | None:intergenic | 20.0% |
| !!! | GGTTTTTTTTTTTTTTTCAG+AGG | - | chr3_2:20873296-20873315 | Msa0398840:intron | 20.0% |
| !!! | TTTTTTTTTCAGAGGTTTTA+TGG | - | chr3_2:20873304-20873323 | Msa0398840:intron | 20.0% |
| !! | ATATTTGATCTCAAATTTGT+TGG | - | chr3_2:20873668-20873687 | Msa0398840:intron | 20.0% |
| !! | TGTTGTAAACCTTTATATTA+CGG | - | chr3_2:20873717-20873736 | Msa0398840:intron | 20.0% |
| !!! | TTTCCTTCTTATTTTAATTG+TGG | - | chr3_2:20873997-20874016 | Msa0398840:intron | 20.0% |
| !!! | TTCCTTCTTATTTTAATTGT+GGG | - | chr3_2:20873998-20874017 | Msa0398840:intron | 20.0% |
| !! | AATTTGAAAAATCAAAAGCA+GGG | + | chr3_2:20874422-20874441 | None:intergenic | 20.0% |
| !! | AATCAAGTTTAACTATATTG+CGG | + | chr3_2:20874867-20874886 | None:intergenic | 20.0% |
| !! | AATTTCAATTAGTTCAATCA+CGG | + | chr3_2:20875017-20875036 | None:intergenic | 20.0% |
| !! | ATTGAAATTATTGAATCATC+TGG | - | chr3_2:20875028-20875047 | Msa0398840:CDS | 20.0% |
| !! | TTAATCAAGAAAAATGTTAC+CGG | + | chr3_2:20875074-20875093 | None:intergenic | 20.0% |
| ! | ATGAGAATAAAAATGTTGCA+GGG | + | chr3_2:20872735-20872754 | None:intergenic | 25.0% |
| ! | TATGAGAATAAAAATGTTGC+AGG | + | chr3_2:20872736-20872755 | None:intergenic | 25.0% |
| ! | TATTCTCATAATTCCTATTC+TGG | - | chr3_2:20872746-20872765 | Msa0398840:three_prime_UTR | 25.0% |
| ! | AAAGATATACAAACCAGAAT+AGG | + | chr3_2:20872762-20872781 | None:intergenic | 25.0% |
| ! | TCTCAAATTATTATCTGTGT+CGG | + | chr3_2:20872930-20872949 | None:intergenic | 25.0% |
| ! | ATGTAATTCTGTGTAATCAT+AGG | - | chr3_2:20872955-20872974 | Msa0398840:CDS | 25.0% |
| !!! | TTTCCTCAGAATTTTTTTCA+AGG | - | chr3_2:20873126-20873145 | Msa0398840:CDS | 25.0% |
| !!! | TTCCTCAGAATTTTTTTCAA+GGG | - | chr3_2:20873127-20873146 | Msa0398840:CDS | 25.0% |
| ! | TTAAAACCAAAGAGAAAATG+AGG | + | chr3_2:20873175-20873194 | None:intergenic | 25.0% |
| !!! | CATTTTCTCTTTGGTTTTAA+TGG | - | chr3_2:20873175-20873194 | Msa0398840:CDS | 25.0% |
| ! | CTAAGATTAATGTGAATGTT+TGG | - | chr3_2:20873275-20873294 | Msa0398840:intron | 25.0% |
| ! | AAGTAAAAAGCTTAAGAGTA+AGG | + | chr3_2:20873360-20873379 | None:intergenic | 25.0% |
| !! | GAAATATTTCTGTGTCAAAT+TGG | - | chr3_2:20873440-20873459 | Msa0398840:intron | 25.0% |
| ! | GTGAAAATTAGAATGAGTTA+AGG | + | chr3_2:20873611-20873630 | None:intergenic | 25.0% |
| !! | TGTGTTTTTCCGTAATATAA+AGG | + | chr3_2:20873729-20873748 | None:intergenic | 25.0% |
| !! | CCAAAATATAAAGGATTTTG+AGG | + | chr3_2:20873780-20873799 | None:intergenic | 25.0% |
| !! | CCTCAAAATCCTTTATATTT+TGG | - | chr3_2:20873777-20873796 | Msa0398840:intron | 25.0% |
| ! | CAATTGTAGCCAAAATATAA+AGG | + | chr3_2:20873789-20873808 | None:intergenic | 25.0% |
| !!! | TTATATTTTGGCTACAATTG+TGG | - | chr3_2:20873789-20873808 | Msa0398840:intron | 25.0% |
| !! | TAATACATGTGACTCTTTTA+AGG | + | chr3_2:20873853-20873872 | None:intergenic | 25.0% |
| ! | TCGTATTAAAAACCACTAAA+TGG | - | chr3_2:20873898-20873917 | Msa0398840:intron | 25.0% |
| ! | CGTATTAAAAACCACTAAAT+GGG | - | chr3_2:20873899-20873918 | Msa0398840:intron | 25.0% |
| !! | ATTATTTAAGACCCATTTAG+TGG | + | chr3_2:20873913-20873932 | None:intergenic | 25.0% |
| !! | CTATCTTTTCGATAAAAAAC+TGG | + | chr3_2:20874025-20874044 | None:intergenic | 25.0% |
| ! | CAATTTGAAAAATCAAAAGC+AGG | + | chr3_2:20874423-20874442 | None:intergenic | 25.0% |
| ! | AAATTGTTATCCTACATGTT+TGG | - | chr3_2:20874437-20874456 | Msa0398840:intron | 25.0% |
| !! | ATACTCAAATTTCTAAGAAC+AGG | - | chr3_2:20874577-20874596 | Msa0398840:intron | 25.0% |
| !! | TATGAGTCATGACAAATTTT+CGG | - | chr3_2:20874655-20874674 | Msa0398840:intron | 25.0% |
| ! | AAAAAACAGAACAAATTTGG+AGG | - | chr3_2:20874750-20874769 | Msa0398840:intron | 25.0% |
| ! | TTAACCAATGTTGTAAAAAC+AGG | - | chr3_2:20874790-20874809 | Msa0398840:intron | 25.0% |
| ! | AAACAGCTAAGAAATTTGAA+AGG | + | chr3_2:20875129-20875148 | None:intergenic | 25.0% |
| ! | AATTAGGATGAAAAGAAGTT+AGG | + | chr3_2:20875177-20875196 | None:intergenic | 25.0% |
| ! | TGTTTAGTATTAGCAAACTT+AGG | + | chr3_2:20875341-20875360 | None:intergenic | 25.0% |
| !! | AATTGAAGAAGGTGTTAAGA+AGG | + | chr3_2:20872628-20872647 | None:intergenic | 30.0% |
| ACAAACACAGAAGTTAAAAG+AGG | + | chr3_2:20872836-20872855 | None:intergenic | 30.0% | |
| ! | GATTTTCCTCATTTTCTCTT+TGG | - | chr3_2:20873166-20873185 | Msa0398840:CDS | 30.0% |
| !!! | TTTCTCTTTGGTTTTAATGG+AGG | - | chr3_2:20873178-20873197 | Msa0398840:CDS | 30.0% |
| ! | AAGAGTAAGGTCTATTTCTT+TGG | + | chr3_2:20873347-20873366 | None:intergenic | 30.0% |
| ! | ACTCTTAAGCTTTTTACTTG+TGG | - | chr3_2:20873361-20873380 | Msa0398840:intron | 30.0% |
| ! | TTTTACTTGTGGTGAAAATG+TGG | - | chr3_2:20873372-20873391 | Msa0398840:intron | 30.0% |
| ACGGAAAAACACAAAAAATG+TGG | - | chr3_2:20873736-20873755 | Msa0398840:intron | 30.0% | |
| ! | AAATGTGGTTGATATTGTTG+CGG | - | chr3_2:20873751-20873770 | Msa0398840:intron | 30.0% |
| !!! | CTTTAGTTTTACTACGATTG+TGG | + | chr3_2:20873827-20873846 | None:intergenic | 30.0% |
| ! | ATGATCAGAGTACTTGTATA+AGG | - | chr3_2:20873949-20873968 | Msa0398840:intron | 30.0% |
| ! | TGATCAGAGTACTTGTATAA+GGG | - | chr3_2:20873950-20873969 | Msa0398840:intron | 30.0% |
| GAAGGAAAATAGGTAAAAGT+TGG | + | chr3_2:20873985-20874004 | None:intergenic | 30.0% | |
| GTCCCACAATTAAAATAAGA+AGG | + | chr3_2:20874003-20874022 | None:intergenic | 30.0% | |
| ATAAAGACACCAACCTATTA+AGG | + | chr3_2:20874108-20874127 | None:intergenic | 30.0% | |
| !! | AATAGGTTGGTGTCTTTATT+AGG | - | chr3_2:20874109-20874128 | Msa0398840:intron | 30.0% |
| ACGATGTAAATACCAACTAA+GGG | + | chr3_2:20874201-20874220 | None:intergenic | 30.0% | |
| AACGATGTAAATACCAACTA+AGG | + | chr3_2:20874202-20874221 | None:intergenic | 30.0% | |
| ! | TTAGTTGGTATTTACATCGT+TGG | - | chr3_2:20874201-20874220 | Msa0398840:intron | 30.0% |
| AAAAGATACTGATACTGTGA+AGG | - | chr3_2:20874264-20874283 | Msa0398840:intron | 30.0% | |
| !!! | GAAGGTTTTTTACATAGCTT+TGG | - | chr3_2:20874282-20874301 | Msa0398840:intron | 30.0% |
| TGCTACAAAATGTGATATTG+CGG | + | chr3_2:20874362-20874381 | None:intergenic | 30.0% | |
| !! | GTTAGAATGGCTCTAAATTA+CGG | + | chr3_2:20874400-20874419 | None:intergenic | 30.0% |
| TCTAAGAACAGGAACATAAA+TGG | - | chr3_2:20874588-20874607 | Msa0398840:intron | 30.0% | |
| CTGAGTTATCAAAAGAGATA+TGG | - | chr3_2:20874705-20874724 | Msa0398840:intron | 30.0% | |
| GGGAAAAAACAGAACAAATT+TGG | - | chr3_2:20874747-20874766 | Msa0398840:intron | 30.0% | |
| ATTGGTTAACACTCATAACA+TGG | + | chr3_2:20874779-20874798 | None:intergenic | 30.0% | |
| TAGTTAAACTTGATTGAACC+AGG | - | chr3_2:20874872-20874891 | Msa0398840:intron | 30.0% | |
| GAAATTATTGAATCATCTGG+AGG | - | chr3_2:20875031-20875050 | Msa0398840:CDS | 30.0% | |
| TTCACATGTGACACATATAT+AGG | - | chr3_2:20875203-20875222 | Msa0398840:intron | 30.0% | |
| ! | CTTGGTTGATATCTGAAATT+TGG | + | chr3_2:20875261-20875280 | None:intergenic | 30.0% |
| ATATCAACCAAGCATGAAAA+TGG | - | chr3_2:20875269-20875288 | Msa0398840:five_prime_UTR | 30.0% | |
| TTAGTATTAGCAAACTTAGG+TGG | + | chr3_2:20875338-20875357 | None:intergenic | 30.0% | |
| !! | ACCTTTAAGACTACAATAGT+CGG | + | chr3_2:20875393-20875412 | None:intergenic | 30.0% |
| AAAACAGTGATATGCTTCAT+TGG | + | chr3_2:20875605-20875624 | None:intergenic | 30.0% | |
| !! | ATTGATCTCTAAAATGAGAC+TGG | + | chr3_2:20875629-20875648 | None:intergenic | 30.0% |
| !! | AGTCTCATTTTAGAGATCAA+TGG | - | chr3_2:20875628-20875647 | Msa0398840:intron | 30.0% |
| TCGTCTTTGTTAGAATGTAA+AGG | - | chr3_2:20875670-20875689 | Msa0398840:intron | 30.0% | |
| TGTTAGAATGTAAAGGTAAG+TGG | - | chr3_2:20875677-20875696 | Msa0398840:intron | 30.0% | |
| !!! | TTCATGAGTTGATTTTTCGA+TGG | + | chr3_2:20875787-20875806 | None:intergenic | 30.0% |
| AGAATAAAAATGTTGCAGGG+TGG | + | chr3_2:20872732-20872751 | None:intergenic | 35.0% | |
| TGTACTTGCATTACTTTGTG+TGG | - | chr3_2:20873097-20873116 | Msa0398840:CDS | 35.0% | |
| CTCCCTTGAAAAAAATTCTG+AGG | + | chr3_2:20873132-20873151 | None:intergenic | 35.0% | |
| GTGAAAATGTGGAAGAAAAG+AGG | - | chr3_2:20873383-20873402 | Msa0398840:intron | 35.0% | |
| !! | TGGAAGAAAAGAGGTTGATA+AGG | - | chr3_2:20873392-20873411 | Msa0398840:intron | 35.0% |
| ATAAGGTCATCATCAATTGC+TGG | - | chr3_2:20873409-20873428 | Msa0398840:intron | 35.0% | |
| ATTATCCTTCCACTATCAAC+TGG | + | chr3_2:20873505-20873524 | None:intergenic | 35.0% | |
| GGATAATGTTGCTAAAAGAG+AGG | - | chr3_2:20873518-20873537 | Msa0398840:intron | 35.0% | |
| TGTTGGACCATGTTAAATTG+TGG | - | chr3_2:20873685-20873704 | Msa0398840:intron | 35.0% | |
| ACCATGTTAAATTGTGGTTG+CGG | - | chr3_2:20873691-20873710 | Msa0398840:intron | 35.0% | |
| TGATCTTATTGTCCCTTAGT+TGG | - | chr3_2:20874186-20874205 | Msa0398840:intron | 35.0% | |
| AATCAAAAGCAGGGTTAGAA+TGG | + | chr3_2:20874413-20874432 | None:intergenic | 35.0% | |
| CAACATGATACCAAACATGT+AGG | + | chr3_2:20874450-20874469 | None:intergenic | 35.0% | |
| CTACATGTTTGGTATCATGT+TGG | - | chr3_2:20874448-20874467 | Msa0398840:intron | 35.0% | |
| CATTAATCGCCAATAACACT+AGG | + | chr3_2:20874549-20874568 | None:intergenic | 35.0% | |
| AGAACAGGAACATAAATGGT+TGG | - | chr3_2:20874592-20874611 | Msa0398840:intron | 35.0% | |
| GAACAGGAACATAAATGGTT+GGG | - | chr3_2:20874593-20874612 | Msa0398840:intron | 35.0% | |
| GACTCATATCTAACAAAAGC+TGG | + | chr3_2:20874643-20874662 | None:intergenic | 35.0% | |
| AACTATATTGCGGTACAACT+GGG | + | chr3_2:20874857-20874876 | None:intergenic | 35.0% | |
| TAACTATATTGCGGTACAAC+TGG | + | chr3_2:20874858-20874877 | None:intergenic | 35.0% | |
| !! | TTTGAAAGGCGTCTCAAAAT+CGG | + | chr3_2:20875115-20875134 | None:intergenic | 35.0% |
| CACATGTGAATGCATCAATT+AGG | + | chr3_2:20875193-20875212 | None:intergenic | 35.0% | |
| ACTCCTTCAGATGAATATCT+TGG | + | chr3_2:20875230-20875249 | None:intergenic | 35.0% | |
| ! | CATTGAACCATTTTCATGCT+TGG | + | chr3_2:20875279-20875298 | None:intergenic | 35.0% |
| CAAGCATGAAAATGGTTCAA+TGG | - | chr3_2:20875277-20875296 | Msa0398840:five_prime_UTR | 35.0% | |
| !! | CTTTAAGACTACAATAGTCG+GGG | + | chr3_2:20875391-20875410 | None:intergenic | 35.0% |
| !! | CCTTTAAGACTACAATAGTC+GGG | + | chr3_2:20875392-20875411 | None:intergenic | 35.0% |
| ! | TAGTCTTAAAGGTGATGTGA+TGG | - | chr3_2:20875400-20875419 | Msa0398840:intron | 35.0% |
| AAGGGTTTCTGTACAAGTAT+AGG | - | chr3_2:20875486-20875505 | Msa0398840:intron | 35.0% | |
| TTTCTGTACAAGTATAGGTC+TGG | - | chr3_2:20875491-20875510 | Msa0398840:intron | 35.0% | |
| !! | CTCATTTTAGAGATCAATGG+TGG | - | chr3_2:20875631-20875650 | Msa0398840:intron | 35.0% |
| AATCCTATGCATTGTTCAAG+TGG | - | chr3_2:20875742-20875761 | Msa0398840:five_prime_UTR | 35.0% | |
| AAACCACTTGAACAATGCAT+AGG | + | chr3_2:20875748-20875767 | None:intergenic | 35.0% | |
| TCAACTCATGAAAAACTACG+CGG | - | chr3_2:20875795-20875814 | Msa0398840:five_prime_UTR | 35.0% | |
| ATTTCTGAATTGCCTCTAAG+TGG | - | chr3_2:20875827-20875846 | Msa0398840:five_prime_UTR | 35.0% | |
| !! | AAAACTTGTTAGCCACTTAG+AGG | + | chr3_2:20875842-20875861 | None:intergenic | 35.0% |
| GAAGAAGAAAGAAGAGAGGA+AGG | + | chr3_2:20872606-20872625 | None:intergenic | 40.0% | |
| GAAGGAAGAAGAAAGAAGAG+AGG | + | chr3_2:20872610-20872629 | None:intergenic | 40.0% | |
| ACGGACACTCTTCAAATTAG+AGG | + | chr3_2:20873032-20873051 | None:intergenic | 40.0% | |
| TGGTCACCTTCAATGAAACA+CGG | + | chr3_2:20873051-20873070 | None:intergenic | 40.0% | |
| CAAGGGAGTTCTTTAGTTGA+AGG | - | chr3_2:20873144-20873163 | Msa0398840:CDS | 40.0% | |
| TCATCAATTGCTGGAGAGAT+AGG | - | chr3_2:20873418-20873437 | Msa0398840:intron | 40.0% | |
| ! | TCTCTCTAAAGATGGCACAA+AGG | + | chr3_2:20873470-20873489 | None:intergenic | 40.0% |
| ! | GAGCAAGATCTCTCTAAAGA+TGG | + | chr3_2:20873478-20873497 | None:intergenic | 40.0% |
| ! | AAAAGAGAGGCATAGAAGTG+TGG | - | chr3_2:20873531-20873550 | Msa0398840:intron | 40.0% |
| ACCGCAACCACAATTTAACA+TGG | + | chr3_2:20873695-20873714 | None:intergenic | 40.0% | |
| CAACCTATTAAGGATCTCGT+TGG | + | chr3_2:20874098-20874117 | None:intergenic | 40.0% | |
| CAACGAGATCCTTAATAGGT+TGG | - | chr3_2:20874096-20874115 | Msa0398840:intron | 40.0% | |
| CAGCATTACATCTGCAATTG+CGG | - | chr3_2:20874316-20874335 | Msa0398840:intron | 40.0% | |
| CTAAATTACGGTTGCAACTG+TGG | + | chr3_2:20874388-20874407 | None:intergenic | 40.0% | |
| !!! | TCATTTTGAAGCGCGTTCAT+CGG | + | chr3_2:20874478-20874497 | None:intergenic | 40.0% |
| TGTTCGTGTCCTAGTGTTAT+TGG | - | chr3_2:20874537-20874556 | Msa0398840:intron | 40.0% | |
| AGAGATATGGCTACGAGTTT+AGG | - | chr3_2:20874718-20874737 | Msa0398840:intron | 40.0% | |
| !!! | CGGTCCTGTTTTTACAACAT+TGG | + | chr3_2:20874797-20874816 | None:intergenic | 40.0% |
| GGTCCAAGATATTCATCTGA+AGG | - | chr3_2:20875224-20875243 | Msa0398840:intron | 40.0% | |
| ATGGCTTTCAAGAAACCAGT+AGG | - | chr3_2:20875296-20875315 | Msa0398840:five_prime_UTR | 40.0% | |
| TTTCAAGAAACCAGTAGGCA+AGG | - | chr3_2:20875301-20875320 | Msa0398840:five_prime_UTR | 40.0% | |
| TTAGCAAACTTAGGTGGAAG+TGG | + | chr3_2:20875332-20875351 | None:intergenic | 40.0% | |
| ! | CCCGACTATTGTAGTCTTAA+AGG | - | chr3_2:20875389-20875408 | Msa0398840:intron | 40.0% |
| CTTCTATTCGCTTCCCATTT+GGG | + | chr3_2:20875469-20875488 | None:intergenic | 40.0% | |
| CAAATGGGAAGCGAATAGAA+GGG | - | chr3_2:20875468-20875487 | Msa0398840:intron | 40.0% | |
| TGTATTGTATGTGTCTGCCA+TGG | - | chr3_2:20875521-20875540 | Msa0398840:intron | 40.0% | |
| GTCAAGTGTCTGTGTTTCAG+AGG | + | chr3_2:20872893-20872912 | None:intergenic | 45.0% | |
| GAGTGTCCGTGTTTCATTGA+AGG | - | chr3_2:20873042-20873061 | Msa0398840:CDS | 45.0% | |
| !! | TGCTCTCTTCCAGTTGATAG+TGG | - | chr3_2:20873493-20873512 | Msa0398840:intron | 45.0% |
| !! | CTCTTCCAGTTGATAGTGGA+AGG | - | chr3_2:20873497-20873516 | Msa0398840:intron | 45.0% |
| CCTATTAAGGATCTCGTTGG+AGG | + | chr3_2:20874095-20874114 | None:intergenic | 45.0% | |
| CCTCCAACGAGATCCTTAAT+AGG | - | chr3_2:20874092-20874111 | Msa0398840:intron | 45.0% | |
| CAGGAACATAAATGGTTGGG+AGG | - | chr3_2:20874596-20874615 | Msa0398840:intron | 45.0% | |
| GCTACGAGTTTAGGAGCAAT+GGG | - | chr3_2:20874727-20874746 | Msa0398840:intron | 45.0% | |
| AAAAACAGGACCGAACCTGT+CGG | - | chr3_2:20874804-20874823 | Msa0398840:intron | 45.0% | |
| GAACCAGGTTAAACTGCAAC+TGG | - | chr3_2:20874887-20874906 | Msa0398840:CDS | 45.0% | |
| TTACCGGAGATCGATACAGT+AGG | + | chr3_2:20875058-20875077 | None:intergenic | 45.0% | |
| AGTGGAATTTCCTTGCCTAC+TGG | + | chr3_2:20875314-20875333 | None:intergenic | 45.0% | |
| CCTTCTATTCGCTTCCCATT+TGG | + | chr3_2:20875470-20875489 | None:intergenic | 45.0% | |
| CCAAATGGGAAGCGAATAGA+AGG | - | chr3_2:20875467-20875486 | Msa0398840:intron | 45.0% | |
| !! | TCACAAACTCCTTTGGAGTG+AGG | + | chr3_2:20875553-20875572 | None:intergenic | 45.0% |
| GCATGCATCACAAACTCCTT+TGG | + | chr3_2:20875560-20875579 | None:intergenic | 45.0% | |
| AAGGAGTTTGTGATGCATGC+TGG | - | chr3_2:20875560-20875579 | Msa0398840:intron | 45.0% | |
| !!! | TTAACTTTTAATTTTTTATT+TGG | - | chr3_2:20873635-20873654 | Msa0398840:intron | 5.0% |
| CACTGACGCGTGTTTGACAT+TGG | - | chr3_2:20873002-20873021 | Msa0398840:CDS | 50.0% | |
| GTGGCAGATTCAGAGCTACA+TGG | - | chr3_2:20873550-20873569 | Msa0398840:intron | 50.0% | |
| GGCTACGAGTTTAGGAGCAA+TGG | - | chr3_2:20874726-20874745 | Msa0398840:intron | 50.0% | |
| !! | ACAGACAGTACCGACAGGTT+CGG | + | chr3_2:20874817-20874836 | None:intergenic | 50.0% |
| !! | AGCAAACAGACAGTACCGAC+AGG | + | chr3_2:20874822-20874841 | None:intergenic | 50.0% |
| TGTCGGTACTGTCTGTTTGC+TGG | - | chr3_2:20874821-20874840 | Msa0398840:intron | 50.0% | |
| ! | GGTACTGTCTGTTTGCTGGT+TGG | - | chr3_2:20874825-20874844 | Msa0398840:intron | 50.0% |
| CTGCCAGTTGCAGTTTAACC+TGG | + | chr3_2:20874893-20874912 | None:intergenic | 50.0% | |
| ! | GGTCCTACTGTATCGATCTC+CGG | - | chr3_2:20875052-20875071 | Msa0398840:CDS | 50.0% |
| ATGCCAAGCGTTACAACGAC+TGG | - | chr3_2:20875437-20875456 | Msa0398840:intron | 50.0% | |
| TCTCCAGTCGTTGTAACGCT+TGG | + | chr3_2:20875443-20875462 | None:intergenic | 50.0% | |
| AGCGTTACAACGACTGGAGA+TGG | - | chr3_2:20875443-20875462 | Msa0398840:intron | 50.0% | |
| TTGGAGTGAGGAAGCTACCA+TGG | + | chr3_2:20875541-20875560 | None:intergenic | 50.0% | |
| TGGTAGCTTCCTCACTCCAA+AGG | - | chr3_2:20875541-20875560 | Msa0398840:intron | 50.0% | |
| GAGTTTGTGATGCATGCTGG+TGG | - | chr3_2:20875563-20875582 | Msa0398840:intron | 50.0% | |
| TGTGATGCATGCTGGTGGAA+AGG | - | chr3_2:20875568-20875587 | Msa0398840:intron | 50.0% | |
| ACGACTGGAGATGGCCCAAA+TGG | - | chr3_2:20875452-20875471 | Msa0398840:intron | 55.0% | |
| CGACTGGAGATGGCCCAAAT+GGG | - | chr3_2:20875453-20875472 | Msa0398840:intron | 55.0% | |
| GCATGCTGGTGGAAAGGAAG+TGG | - | chr3_2:20875574-20875593 | Msa0398840:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 20872595 | 20875863 | 20872595 | ID=Msa0398840;Name=Msa0398840 |
| chr3_2 | mRNA | 20872595 | 20875863 | 20872595 | ID=Msa0398840-mRNA-1;Parent=Msa0398840;Name=Msa0398840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=232|1|1|1|0.66|0.5|4|223|225 |
| chr3_2 | exon | 20872595 | 20873233 | 20872595 | ID=Msa0398840-mRNA-1:exon:4565;Parent=Msa0398840-mRNA-1 |
| chr3_2 | exon | 20874887 | 20875142 | 20874887 | ID=Msa0398840-mRNA-1:exon:4564;Parent=Msa0398840-mRNA-1 |
| chr3_2 | exon | 20875259 | 20875323 | 20875259 | ID=Msa0398840-mRNA-1:exon:4563;Parent=Msa0398840-mRNA-1 |
| chr3_2 | exon | 20875691 | 20875863 | 20875691 | ID=Msa0398840-mRNA-1:exon:4562;Parent=Msa0398840-mRNA-1 |
| chr3_2 | five_prime_UTR | 20875691 | 20875863 | 20875691 | ID=Msa0398840-mRNA-1:five_prime_utr;Parent=Msa0398840-mRNA-1 |
| chr3_2 | five_prime_UTR | 20875265 | 20875323 | 20875265 | ID=Msa0398840-mRNA-1:five_prime_utr;Parent=Msa0398840-mRNA-1 |
| chr3_2 | CDS | 20875259 | 20875264 | 20875259 | ID=Msa0398840-mRNA-1:cds;Parent=Msa0398840-mRNA-1 |
| chr3_2 | CDS | 20874887 | 20875142 | 20874887 | ID=Msa0398840-mRNA-1:cds;Parent=Msa0398840-mRNA-1 |
| chr3_2 | CDS | 20872818 | 20873233 | 20872818 | ID=Msa0398840-mRNA-1:cds;Parent=Msa0398840-mRNA-1 |
| chr3_2 | three_prime_UTR | 20872595 | 20872817 | 20872595 | ID=Msa0398840-mRNA-1:three_prime_utr;Parent=Msa0398840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
