Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353620 | XP_027904285.1 | 36.061 | 330 | 171 | 8 | 50 | 371 | 151 | 448 | 2.65e-55 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353620 | A0A1S2YJ96 | 44.538 | 238 | 119 | 3 | 147 | 371 | 33 | 270 | 3.62e-55 | 201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084440 | Msa0353620 | 0.801006 | 1.103498e-48 | -8.615850e-47 |
| Msa0353620 | Msa0393590 | 0.810928 | 9.033539e-51 | -8.615850e-47 |
| Msa0353620 | Msa1091980 | 0.803096 | 4.103354e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353620 | MtrunA17_Chr4g0039731 | 47.162 | 229 | 115 | 4 | 149 | 371 | 157 | 385 | 4.24e-57 | 199 |
| Msa0353620 | MtrunA17_Chr3g0086081 | 32.022 | 178 | 113 | 3 | 172 | 341 | 4 | 181 | 2.77e-20 | 91.3 |
| Msa0353620 | MtrunA17_Chr4g0010341 | 32.121 | 165 | 101 | 4 | 153 | 306 | 181 | 345 | 4.62e-20 | 91.7 |
| Msa0353620 | MtrunA17_Chr1g0168171 | 55.696 | 79 | 32 | 3 | 222 | 298 | 1 | 78 | 5.84e-20 | 84.0 |
| Msa0353620 | MtrunA17_Chr8g0345501 | 26.147 | 218 | 153 | 5 | 161 | 370 | 413 | 630 | 2.92e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 124 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTATTAGGCGTCAATTTC+GGG | 0.176665 | 3_1:+23804816 | Msa0353620:CDS |
| TTTAAAATAGCATCTTTATC+AGG | 0.210469 | 3_1:-23804573 | None:intergenic |
| GCATCCTCTCCCATCCATTT+AGG | 0.218415 | 3_1:-23805122 | None:intergenic |
| GGACCACAGTTGATGTCTTT+TGG | 0.233233 | 3_1:-23804296 | None:intergenic |
| TGGCTATTAGGCGTCAATTT+CGG | 0.262175 | 3_1:+23804815 | Msa0353620:CDS |
| GAGAGAAACGACTTCAATTA+TGG | 0.263558 | 3_1:+23806036 | Msa0353620:CDS |
| GCTTACAAAAGTAAGAAATA+AGG | 0.306817 | 3_1:+23805091 | Msa0353620:CDS |
| CCATCCTGATGAACTCTTCT+TGG | 0.306942 | 3_1:+23805392 | Msa0353620:CDS |
| TGTAGGTTGGACGGCTGGTC+GGG | 0.311365 | 3_1:-23804346 | None:intergenic |
| ACTAGGTTGGACGGCTGGTC+GGG | 0.330738 | 3_1:-23804409 | None:intergenic |
| ATAAAATACCCTTGACCAAT+TGG | 0.342640 | 3_1:-23804609 | None:intergenic |
| ACCACTGGTGTTGGTGGGTC+AGG | 0.353041 | 3_1:-23804447 | None:intergenic |
| AATCAGCTTCAGTAGCTCTT+TGG | 0.362165 | 3_1:-23806234 | None:intergenic |
| CATATGATGGTCTTGAATAT+TGG | 0.363577 | 3_1:+23805144 | Msa0353620:CDS |
| AAGATGTTCCTCAAGATCTA+TGG | 0.363798 | 3_1:+23804857 | Msa0353620:CDS |
| ATGCAATGAGGATGGCTATT+AGG | 0.367943 | 3_1:+23804803 | Msa0353620:CDS |
| CAACCATTACTTCATGCTTT+CGG | 0.371710 | 3_1:+23804041 | None:intergenic |
| CTCAATATGATACGGAAATC+AGG | 0.372504 | 3_1:+23805027 | Msa0353620:CDS |
| GTTGGCTACAACAAGTTTCC+TGG | 0.374689 | 3_1:-23804214 | None:intergenic |
| CTTACAAAAGTAAGAAATAA+GGG | 0.376089 | 3_1:+23805092 | Msa0353620:CDS |
| GGTCGGGGAGGTTGGATGGC+TGG | 0.377425 | 3_1:-23804393 | None:intergenic |
| GGTTGGATGGCTGGTCGGGC+AGG | 0.388938 | 3_1:-23804384 | None:intergenic |
| GGGAAGTTGGATGGCTGGTC+GGG | 0.390801 | 3_1:-23804325 | None:intergenic |
| AGCATGTCAGTAAGGTGCTT+TGG | 0.392833 | 3_1:-23805071 | None:intergenic |
| GGGAGGTTGGATGGCTGGTC+GGG | 0.392962 | 3_1:-23804388 | None:intergenic |
| GGACGGCTGGTCGGGGAGGT+TGG | 0.399368 | 3_1:-23804401 | None:intergenic |
| GTTGGTGAGGTGGGTTCAAC+TGG | 0.406399 | 3_1:-23804270 | None:intergenic |
| GCATGTCAGTAAGGTGCTTT+GGG | 0.408726 | 3_1:-23805070 | None:intergenic |
| AGTTGGATGGCTGGTCGGGC+AGG | 0.414174 | 3_1:-23804321 | None:intergenic |
| GGACGGCTGGTCGGGGAAGT+TGG | 0.414428 | 3_1:-23804338 | None:intergenic |
| CTGTAGGTTGGACGGCTGGT+CGG | 0.429811 | 3_1:-23804347 | None:intergenic |
| TGATCATCTGCAAGGTGTGC+AGG | 0.431034 | 3_1:+23804521 | Msa0353620:CDS |
| TCTGACAGGAATATGTTTCA+TGG | 0.431668 | 3_1:+23805000 | Msa0353620:intron |
| CAATCTTCGTTAGCTGAGTC+AGG | 0.433618 | 3_1:-23805977 | None:intergenic |
| AAGATTGATAAGAATTCTAA+TGG | 0.441467 | 3_1:+23805993 | Msa0353620:CDS |
| GGGGAGGTTGGATGGCTGGT+CGG | 0.446752 | 3_1:-23804389 | None:intergenic |
| GGATGGCTGGTCGGGCAGGT+TGG | 0.451005 | 3_1:-23804317 | None:intergenic |
| GTAGCCAAGAAGAGTTCATC+AGG | 0.453504 | 3_1:-23805396 | None:intergenic |
| GGATGGCTGGTCGGGCAGGT+TGG | 0.462997 | 3_1:-23804380 | None:intergenic |
| TAAGAGGAAGTCTGGCGATT+GGG | 0.464547 | 3_1:+23805422 | Msa0353620:CDS |
| GGCTGGTCGGGGAGGTTGGA+TGG | 0.466137 | 3_1:-23804397 | None:intergenic |
| GGTTGGACAGCTAGATTACT+AGG | 0.467143 | 3_1:-23804426 | None:intergenic |
| GGGGAAGTTGGATGGCTGGT+CGG | 0.471988 | 3_1:-23804326 | None:intergenic |
| AAGACCATCATACGCCCAAT+TGG | 0.473609 | 3_1:+23804594 | Msa0353620:CDS |
| TTAAAATAGCATCTTTATCA+GGG | 0.475862 | 3_1:-23804572 | None:intergenic |
| TAAAATACCCTTGACCAATT+GGG | 0.480390 | 3_1:-23804608 | None:intergenic |
| AGAGAAACGACTTCAATTAT+GGG | 0.482595 | 3_1:+23806037 | Msa0353620:CDS |
| GCATTAGCACCAACTTTGCT+AGG | 0.485956 | 3_1:-23804784 | None:intergenic |
| CTAGGTTGGACGGCTGGTCG+GGG | 0.485971 | 3_1:-23804408 | None:intergenic |
| TACTAGGTTGGACGGCTGGT+CGG | 0.490687 | 3_1:-23804410 | None:intergenic |
| GCTACTAGTAAGAGGAAGTC+TGG | 0.493733 | 3_1:+23805414 | Msa0353620:CDS |
| GGTCGGGGAAGTTGGATGGC+TGG | 0.494162 | 3_1:-23804330 | None:intergenic |
| TCTTCTTGGCTACTAGTAAG+AGG | 0.494470 | 3_1:+23805406 | Msa0353620:CDS |
| GTAGGTTGGACGGCTGGTCG+GGG | 0.494822 | 3_1:-23804345 | None:intergenic |
| GACTGACAGTGTAAAATACT+TGG | 0.496379 | 3_1:+23805360 | Msa0353620:intron |
| TACCTTCGAACGAGCATTGG+TGG | 0.497807 | 3_1:-23804163 | None:intergenic |
| GTTGCTTTAGCAAGATATCC+AGG | 0.497813 | 3_1:-23804192 | None:intergenic |
| CTGGTGTTGGTGGGTCAGGT+TGG | 0.501803 | 3_1:-23804443 | None:intergenic |
| TTTATCAGGGGCCTCTTGCT+CGG | 0.502491 | 3_1:-23804559 | None:intergenic |
| TAATACCTTCGAACGAGCAT+TGG | 0.512777 | 3_1:-23804166 | None:intergenic |
| CAACCGAAAGCATGAAGTAA+TGG | 0.513241 | 3_1:-23804044 | None:intergenic |
| GGCTGGTCGGGGAAGTTGGA+TGG | 0.521668 | 3_1:-23804334 | None:intergenic |
| AGATTTACTCCTAGCAAAGT+TGG | 0.524457 | 3_1:+23804775 | Msa0353620:intron |
| TTGACCAATTGGGCGTATGA+TGG | 0.526388 | 3_1:-23804598 | None:intergenic |
| AGATTACTAGGTTGGACGGC+TGG | 0.526833 | 3_1:-23804414 | None:intergenic |
| GTAAGAGGAAGTCTGGCGAT+TGG | 0.530830 | 3_1:+23805421 | Msa0353620:CDS |
| GGTAGGACCACTGGTGTTGG+TGG | 0.531442 | 3_1:-23804453 | None:intergenic |
| GGACAGCTAGATTACTAGGT+TGG | 0.536618 | 3_1:-23804422 | None:intergenic |
| AGTTCTGTAGGTTGGACGGC+TGG | 0.538025 | 3_1:-23804351 | None:intergenic |
| GGCTGCAGCAGCACGTGTTG+AGG | 0.540594 | 3_1:+23806198 | Msa0353620:CDS |
| GCAGATGATCATCCTCCTCA+AGG | 0.541005 | 3_1:-23804509 | None:intergenic |
| AAGAGTTCATCAGGATGGAT+AGG | 0.544009 | 3_1:-23805387 | None:intergenic |
| CTGACAGGAATATGTTTCAT+GGG | 0.544185 | 3_1:+23805001 | Msa0353620:intron |
| GAGGTGGGTTCAACTGGCCG+TGG | 0.544724 | 3_1:-23804264 | None:intergenic |
| ATCATACGCCCAATTGGTCA+AGG | 0.549638 | 3_1:+23804600 | Msa0353620:CDS |
| AAACACACATACCGAGCAAG+AGG | 0.553474 | 3_1:+23804548 | Msa0353620:CDS |
| GGTTGGACAACTAGTTCTGT+AGG | 0.556888 | 3_1:-23804363 | None:intergenic |
| TCAAGGGAAGGTAGTGATGC+CGG | 0.557311 | 3_1:-23804492 | None:intergenic |
| AACTAGTTCTGTAGGTTGGA+CGG | 0.559498 | 3_1:-23804355 | None:intergenic |
| CGTTCGAAGGTATTACAACC+TGG | 0.561627 | 3_1:+23804174 | Msa0353620:CDS |
| GAGCCTTACGACTTGTGGTA+TGG | 0.567047 | 3_1:-23805238 | None:intergenic |
| AGCTAGATTACTAGGTTGGA+CGG | 0.567923 | 3_1:-23804418 | None:intergenic |
| GTTGCAAACCATAGATCTTG+AGG | 0.569886 | 3_1:-23804865 | None:intergenic |
| AATCGAGGTTCGAACAAAGC+AGG | 0.572550 | 3_1:+23805209 | Msa0353620:CDS |
| TGTCCATACCACAAGTCGTA+AGG | 0.572884 | 3_1:+23805235 | Msa0353620:CDS |
| GGACAACTAGTTCTGTAGGT+TGG | 0.573006 | 3_1:-23804359 | None:intergenic |
| ATGGGAGACTCAATATGATA+CGG | 0.573075 | 3_1:+23805019 | Msa0353620:CDS |
| ACTTGAGAAGGTAGGACCAC+TGG | 0.576985 | 3_1:-23804462 | None:intergenic |
| TTCCACCAATGCTCGTTCGA+AGG | 0.580514 | 3_1:+23804161 | Msa0353620:CDS |
| CCAAGAAGAGTTCATCAGGA+TGG | 0.580522 | 3_1:-23805392 | None:intergenic |
| GATCATCTGCAAGGTGTGCA+GGG | 0.585289 | 3_1:+23804522 | Msa0353620:CDS |
| TACAAAAGTAAGAAATAAGG+GGG | 0.586297 | 3_1:+23805094 | Msa0353620:CDS |
| GCCGGTGCAGTCACTTGAGA+AGG | 0.587439 | 3_1:-23804474 | None:intergenic |
| GGTTGGACGGCTGGTCGGGG+AGG | 0.593722 | 3_1:-23804405 | None:intergenic |
| TAAAATAGCATCTTTATCAG+GGG | 0.597112 | 3_1:-23804571 | None:intergenic |
| GATTGGGTTGACAGTCGTGC+TGG | 0.597801 | 3_1:+23805438 | Msa0353620:CDS |
| GATATCTTGCTAAAGCAACC+AGG | 0.601805 | 3_1:+23804196 | Msa0353620:CDS |
| CCACGACATTGCACTAGACA+TGG | 0.603115 | 3_1:+23805262 | Msa0353620:CDS |
| CAGATGATCATCCTCCTCAA+GGG | 0.604430 | 3_1:-23804508 | None:intergenic |
| AAAATGACTAGACAATGTCA+TGG | 0.611773 | 3_1:+23804120 | Msa0353620:exon |
| ATCACTACCTTCCCTTGAGG+AGG | 0.612047 | 3_1:+23804497 | Msa0353620:CDS |
| GAAACCTAAATGGATGGGAG+AGG | 0.615423 | 3_1:+23805118 | Msa0353620:CDS |
| TCACAAAACAAGACTAATCG+AGG | 0.616115 | 3_1:+23805194 | Msa0353620:CDS |
| TTACAAAAGTAAGAAATAAG+GGG | 0.619851 | 3_1:+23805093 | Msa0353620:CDS |
| ACCTGACCCACCAACACCAG+TGG | 0.619888 | 3_1:+23804446 | Msa0353620:CDS |
| TAATGGTGATATGCAAGAGG+TGG | 0.623058 | 3_1:+23806010 | Msa0353620:CDS |
| ACCTTCTCAAGTGACTGCAC+CGG | 0.628487 | 3_1:+23804473 | Msa0353620:CDS |
| CAAAAGTAAGAAATAAGGGG+GGG | 0.631300 | 3_1:+23805096 | Msa0353620:CDS |
| ATGGGAGAGGATGCATATGA+TGG | 0.631614 | 3_1:+23805131 | Msa0353620:CDS |
| TTCTAATGGTGATATGCAAG+AGG | 0.631960 | 3_1:+23806007 | Msa0353620:CDS |
| GGTGATATGCAAGAGGTGGA+CGG | 0.632300 | 3_1:+23806014 | Msa0353620:CDS |
| TGATCATCCTCCTCAAGGGA+AGG | 0.637079 | 3_1:-23804504 | None:intergenic |
| GAGGAGGATGATCATCTGCA+AGG | 0.643850 | 3_1:+23804513 | Msa0353620:CDS |
| GTGCAGTCACTTGAGAAGGT+AGG | 0.645618 | 3_1:-23804470 | None:intergenic |
| GGCATCACTACCTTCCCTTG+AGG | 0.646807 | 3_1:+23804494 | Msa0353620:CDS |
| GTAGGACCACTGGTGTTGGT+GGG | 0.648618 | 3_1:-23804452 | None:intergenic |
| TCATACGCCCAATTGGTCAA+GGG | 0.653662 | 3_1:+23804601 | Msa0353620:CDS |
| GAAGGTAGGACCACTGGTGT+TGG | 0.667106 | 3_1:-23804456 | None:intergenic |
| ACAAAAGTAAGAAATAAGGG+GGG | 0.670973 | 3_1:+23805095 | Msa0353620:CDS |
| TGGTGCTAATGCAATGAGGA+TGG | 0.674442 | 3_1:+23804795 | Msa0353620:CDS |
| GTGGTGAGCCTTACGACTTG+TGG | 0.704447 | 3_1:-23805243 | None:intergenic |
| AATCCAAAAGACATCAACTG+TGG | 0.734923 | 3_1:+23804293 | Msa0353620:CDS |
| CCATGTCTAGTGCAATGTCG+TGG | 0.742615 | 3_1:-23805262 | None:intergenic |
| AAGTTGGTGCTAATGCAATG+AGG | 0.752941 | 3_1:+23804791 | Msa0353620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGATCAAAATACATATA+TGG | + | chr3_1:23805694-23805713 | Msa0353620:intron | 15.0% |
| !! | ATATGTGAACATATATAATT+TGG | + | chr3_1:23805804-23805823 | Msa0353620:intron | 15.0% |
| !! | TAATGATCAAAATACATATA+TGG | + | chr3_1:23805694-23805713 | Msa0353620:intron | 15.0% |
| !! | ATATGTGAACATATATAATT+TGG | + | chr3_1:23805804-23805823 | Msa0353620:intron | 15.0% |
| !! | TTAAAATAGCATCTTTATCA+GGG | - | chr3_1:23804575-23804594 | None:intergenic | 20.0% |
| !!! | TTTAAAATAGCATCTTTATC+AGG | - | chr3_1:23804576-23804595 | None:intergenic | 20.0% |
| !! | AAAGAATAATATTGCTTCAT+TGG | + | chr3_1:23804906-23804925 | Msa0353620:intron | 20.0% |
| !! | CTTACAAAAGTAAGAAATAA+GGG | + | chr3_1:23805092-23805111 | Msa0353620:CDS | 20.0% |
| !! | TTACAAAAGTAAGAAATAAG+GGG | + | chr3_1:23805093-23805112 | Msa0353620:CDS | 20.0% |
| !! | ATGAACTAGATATTAAAGAA+TGG | - | chr3_1:23805300-23805319 | None:intergenic | 20.0% |
| !!! | AGACATTACTATTTGTTTTA+TGG | + | chr3_1:23805334-23805353 | Msa0353620:intron | 20.0% |
| !! | ATATGTGAACATATATAATC+TGG | + | chr3_1:23805581-23805600 | Msa0353620:intron | 20.0% |
| !!! | TAACACATATATCAAGATTT+TGG | - | chr3_1:23805780-23805799 | None:intergenic | 20.0% |
| !!! | TAATAAGTTGTGTTTTTTAC+AGG | + | chr3_1:23805938-23805957 | Msa0353620:intron | 20.0% |
| !! | AAGATTGATAAGAATTCTAA+TGG | + | chr3_1:23805993-23806012 | Msa0353620:CDS | 20.0% |
| !!! | AATTATGGGTATATGTTTTT+GGG | + | chr3_1:23806051-23806070 | Msa0353620:CDS | 20.0% |
| !! | TTAAAATAGCATCTTTATCA+GGG | - | chr3_1:23804575-23804594 | None:intergenic | 20.0% |
| !!! | TTTAAAATAGCATCTTTATC+AGG | - | chr3_1:23804576-23804595 | None:intergenic | 20.0% |
| !! | AAAGAATAATATTGCTTCAT+TGG | + | chr3_1:23804906-23804925 | Msa0353620:intron | 20.0% |
| !! | CTTACAAAAGTAAGAAATAA+GGG | + | chr3_1:23805092-23805111 | Msa0353620:CDS | 20.0% |
| !! | TTACAAAAGTAAGAAATAAG+GGG | + | chr3_1:23805093-23805112 | Msa0353620:CDS | 20.0% |
| !! | ATGAACTAGATATTAAAGAA+TGG | - | chr3_1:23805300-23805319 | None:intergenic | 20.0% |
| !!! | AGACATTACTATTTGTTTTA+TGG | + | chr3_1:23805334-23805353 | Msa0353620:intron | 20.0% |
| !! | ATATGTGAACATATATAATC+TGG | + | chr3_1:23805581-23805600 | Msa0353620:intron | 20.0% |
| !!! | TAACACATATATCAAGATTT+TGG | - | chr3_1:23805780-23805799 | None:intergenic | 20.0% |
| !!! | TAATAAGTTGTGTTTTTTAC+AGG | + | chr3_1:23805938-23805957 | Msa0353620:intron | 20.0% |
| !! | AAGATTGATAAGAATTCTAA+TGG | + | chr3_1:23805993-23806012 | Msa0353620:CDS | 20.0% |
| !!! | AATTATGGGTATATGTTTTT+GGG | + | chr3_1:23806051-23806070 | Msa0353620:CDS | 20.0% |
| ! | TAAAATAGCATCTTTATCAG+GGG | - | chr3_1:23804574-23804593 | None:intergenic | 25.0% |
| !!! | CTATTTTTATATTGTCTGAC+AGG | + | chr3_1:23804986-23805005 | Msa0353620:intron | 25.0% |
| ! | GCTTACAAAAGTAAGAAATA+AGG | + | chr3_1:23805091-23805110 | Msa0353620:CDS | 25.0% |
| ! | TACAAAAGTAAGAAATAAGG+GGG | + | chr3_1:23805094-23805113 | Msa0353620:CDS | 25.0% |
| ! | CATAATGAATTATGGTTGTT+CGG | - | chr3_1:23805616-23805635 | None:intergenic | 25.0% |
| !! | ATCAAGATTTTGGACATATT+CGG | - | chr3_1:23805770-23805789 | None:intergenic | 25.0% |
| !! | CAATTATGGGTATATGTTTT+TGG | + | chr3_1:23806050-23806069 | Msa0353620:CDS | 25.0% |
| !!! | ATTATGGGTATATGTTTTTG+GGG | + | chr3_1:23806052-23806071 | Msa0353620:CDS | 25.0% |
| !!! | ATTTCTATCACCTCATTTTT+AGG | - | chr3_1:23806166-23806185 | None:intergenic | 25.0% |
| ! | TAAAATAGCATCTTTATCAG+GGG | - | chr3_1:23804574-23804593 | None:intergenic | 25.0% |
| !!! | CTATTTTTATATTGTCTGAC+AGG | + | chr3_1:23804986-23805005 | Msa0353620:intron | 25.0% |
| ! | GCTTACAAAAGTAAGAAATA+AGG | + | chr3_1:23805091-23805110 | Msa0353620:CDS | 25.0% |
| ! | TACAAAAGTAAGAAATAAGG+GGG | + | chr3_1:23805094-23805113 | Msa0353620:CDS | 25.0% |
| ! | CATAATGAATTATGGTTGTT+CGG | - | chr3_1:23805616-23805635 | None:intergenic | 25.0% |
| !! | ATCAAGATTTTGGACATATT+CGG | - | chr3_1:23805770-23805789 | None:intergenic | 25.0% |
| !! | CAATTATGGGTATATGTTTT+TGG | + | chr3_1:23806050-23806069 | Msa0353620:CDS | 25.0% |
| !!! | ATTATGGGTATATGTTTTTG+GGG | + | chr3_1:23806052-23806071 | Msa0353620:CDS | 25.0% |
| !!! | ATTTCTATCACCTCATTTTT+AGG | - | chr3_1:23806166-23806185 | None:intergenic | 25.0% |
| AAAATGACTAGACAATGTCA+TGG | + | chr3_1:23804120-23804139 | Msa0353620:exon | 30.0% | |
| TAAAATACCCTTGACCAATT+GGG | - | chr3_1:23804611-23804630 | None:intergenic | 30.0% | |
| ATAAAATACCCTTGACCAAT+TGG | - | chr3_1:23804612-23804631 | None:intergenic | 30.0% | |
| !! | TCTATGGTTTGCAACATTTT+CGG | + | chr3_1:23804873-23804892 | Msa0353620:CDS | 30.0% |
| ACAAAAGTAAGAAATAAGGG+GGG | + | chr3_1:23805095-23805114 | Msa0353620:CDS | 30.0% | |
| ! | CATATGATGGTCTTGAATAT+TGG | + | chr3_1:23805144-23805163 | Msa0353620:CDS | 30.0% |
| CACAAGCACATAATGAATTA+TGG | - | chr3_1:23805624-23805643 | None:intergenic | 30.0% | |
| TCTCAAATTGCAAATATTCG+AGG | - | chr3_1:23805734-23805753 | None:intergenic | 30.0% | |
| ! | CAGAAGCACATAATGAATTA+TGG | - | chr3_1:23805847-23805866 | None:intergenic | 30.0% |
| AGAGAAACGACTTCAATTAT+GGG | + | chr3_1:23806037-23806056 | Msa0353620:CDS | 30.0% | |
| !!! | TTATGGGTATATGTTTTTGG+GGG | + | chr3_1:23806053-23806072 | Msa0353620:CDS | 30.0% |
| TTATCTTTCAACATTAGACC+AGG | + | chr3_1:23806109-23806128 | Msa0353620:intron | 30.0% | |
| TATCTTTCAACATTAGACCA+GGG | + | chr3_1:23806110-23806129 | Msa0353620:intron | 30.0% | |
| AAAATGACTAGACAATGTCA+TGG | + | chr3_1:23804120-23804139 | Msa0353620:exon | 30.0% | |
| TAAAATACCCTTGACCAATT+GGG | - | chr3_1:23804611-23804630 | None:intergenic | 30.0% | |
| ATAAAATACCCTTGACCAAT+TGG | - | chr3_1:23804612-23804631 | None:intergenic | 30.0% | |
| !! | TCTATGGTTTGCAACATTTT+CGG | + | chr3_1:23804873-23804892 | Msa0353620:CDS | 30.0% |
| ACAAAAGTAAGAAATAAGGG+GGG | + | chr3_1:23805095-23805114 | Msa0353620:CDS | 30.0% | |
| ! | CATATGATGGTCTTGAATAT+TGG | + | chr3_1:23805144-23805163 | Msa0353620:CDS | 30.0% |
| CACAAGCACATAATGAATTA+TGG | - | chr3_1:23805624-23805643 | None:intergenic | 30.0% | |
| TCTCAAATTGCAAATATTCG+AGG | - | chr3_1:23805734-23805753 | None:intergenic | 30.0% | |
| ! | CAGAAGCACATAATGAATTA+TGG | - | chr3_1:23805847-23805866 | None:intergenic | 30.0% |
| AGAGAAACGACTTCAATTAT+GGG | + | chr3_1:23806037-23806056 | Msa0353620:CDS | 30.0% | |
| !!! | TTATGGGTATATGTTTTTGG+GGG | + | chr3_1:23806053-23806072 | Msa0353620:CDS | 30.0% |
| TTATCTTTCAACATTAGACC+AGG | + | chr3_1:23806109-23806128 | Msa0353620:intron | 30.0% | |
| TATCTTTCAACATTAGACCA+GGG | + | chr3_1:23806110-23806129 | Msa0353620:intron | 30.0% | |
| ! | GTTGATGTCTTTTGGATTGT+TGG | - | chr3_1:23804291-23804310 | None:intergenic | 35.0% |
| AATCCAAAAGACATCAACTG+TGG | + | chr3_1:23804293-23804312 | Msa0353620:CDS | 35.0% | |
| AGATTTACTCCTAGCAAAGT+TGG | + | chr3_1:23804775-23804794 | Msa0353620:intron | 35.0% | |
| ! | GTCAATTTCGGGATGTTTTT+AGG | + | chr3_1:23804827-23804846 | Msa0353620:CDS | 35.0% |
| AAGATGTTCCTCAAGATCTA+TGG | + | chr3_1:23804857-23804876 | Msa0353620:CDS | 35.0% | |
| GCTTCATTGGTAGAAAAATG+TGG | + | chr3_1:23804919-23804938 | Msa0353620:intron | 35.0% | |
| TCTGACAGGAATATGTTTCA+TGG | + | chr3_1:23805000-23805019 | Msa0353620:intron | 35.0% | |
| CTGACAGGAATATGTTTCAT+GGG | + | chr3_1:23805001-23805020 | Msa0353620:intron | 35.0% | |
| ATGGGAGACTCAATATGATA+CGG | + | chr3_1:23805019-23805038 | Msa0353620:CDS | 35.0% | |
| CTCAATATGATACGGAAATC+AGG | + | chr3_1:23805027-23805046 | Msa0353620:CDS | 35.0% | |
| ! | CTTTTGTAAGCATGTCAGTA+AGG | - | chr3_1:23805082-23805101 | None:intergenic | 35.0% |
| CAAAAGTAAGAAATAAGGGG+GGG | + | chr3_1:23805096-23805115 | Msa0353620:CDS | 35.0% | |
| TCACAAAACAAGACTAATCG+AGG | + | chr3_1:23805194-23805213 | Msa0353620:CDS | 35.0% | |
| GACTGACAGTGTAAAATACT+TGG | + | chr3_1:23805360-23805379 | Msa0353620:intron | 35.0% | |
| CTCAAGATTGCAGACATATT+CGG | - | chr3_1:23805561-23805580 | None:intergenic | 35.0% | |
| TTCTAATGGTGATATGCAAG+AGG | + | chr3_1:23806007-23806026 | Msa0353620:CDS | 35.0% | |
| GAGAGAAACGACTTCAATTA+TGG | + | chr3_1:23806036-23806055 | Msa0353620:CDS | 35.0% | |
| GAGGTAATTGTTATCGTACT+GGG | + | chr3_1:23806083-23806102 | Msa0353620:intron | 35.0% | |
| AGGTAATTGTTATCGTACTG+GGG | + | chr3_1:23806084-23806103 | Msa0353620:intron | 35.0% | |
| ATCTTTCAACATTAGACCAG+GGG | + | chr3_1:23806111-23806130 | Msa0353620:intron | 35.0% | |
| !! | TCTATCACCTCATTTTTAGG+AGG | - | chr3_1:23806163-23806182 | None:intergenic | 35.0% |
| ! | GTTGATGTCTTTTGGATTGT+TGG | - | chr3_1:23804291-23804310 | None:intergenic | 35.0% |
| AATCCAAAAGACATCAACTG+TGG | + | chr3_1:23804293-23804312 | Msa0353620:CDS | 35.0% | |
| AGATTTACTCCTAGCAAAGT+TGG | + | chr3_1:23804775-23804794 | Msa0353620:intron | 35.0% | |
| ! | GTCAATTTCGGGATGTTTTT+AGG | + | chr3_1:23804827-23804846 | Msa0353620:CDS | 35.0% |
| AAGATGTTCCTCAAGATCTA+TGG | + | chr3_1:23804857-23804876 | Msa0353620:CDS | 35.0% | |
| GCTTCATTGGTAGAAAAATG+TGG | + | chr3_1:23804919-23804938 | Msa0353620:intron | 35.0% | |
| TCTGACAGGAATATGTTTCA+TGG | + | chr3_1:23805000-23805019 | Msa0353620:intron | 35.0% | |
| CTGACAGGAATATGTTTCAT+GGG | + | chr3_1:23805001-23805020 | Msa0353620:intron | 35.0% | |
| ATGGGAGACTCAATATGATA+CGG | + | chr3_1:23805019-23805038 | Msa0353620:CDS | 35.0% | |
| CTCAATATGATACGGAAATC+AGG | + | chr3_1:23805027-23805046 | Msa0353620:CDS | 35.0% | |
| ! | CTTTTGTAAGCATGTCAGTA+AGG | - | chr3_1:23805082-23805101 | None:intergenic | 35.0% |
| CAAAAGTAAGAAATAAGGGG+GGG | + | chr3_1:23805096-23805115 | Msa0353620:CDS | 35.0% | |
| TCACAAAACAAGACTAATCG+AGG | + | chr3_1:23805194-23805213 | Msa0353620:CDS | 35.0% | |
| GACTGACAGTGTAAAATACT+TGG | + | chr3_1:23805360-23805379 | Msa0353620:intron | 35.0% | |
| CTCAAGATTGCAGACATATT+CGG | - | chr3_1:23805561-23805580 | None:intergenic | 35.0% | |
| TTCTAATGGTGATATGCAAG+AGG | + | chr3_1:23806007-23806026 | Msa0353620:CDS | 35.0% | |
| GAGAGAAACGACTTCAATTA+TGG | + | chr3_1:23806036-23806055 | Msa0353620:CDS | 35.0% | |
| GAGGTAATTGTTATCGTACT+GGG | + | chr3_1:23806083-23806102 | Msa0353620:intron | 35.0% | |
| AGGTAATTGTTATCGTACTG+GGG | + | chr3_1:23806084-23806103 | Msa0353620:intron | 35.0% | |
| ATCTTTCAACATTAGACCAG+GGG | + | chr3_1:23806111-23806130 | Msa0353620:intron | 35.0% | |
| !! | TCTATCACCTCATTTTTAGG+AGG | - | chr3_1:23806163-23806182 | None:intergenic | 35.0% |
| TAATACCTTCGAACGAGCAT+TGG | - | chr3_1:23804169-23804188 | None:intergenic | 40.0% | |
| ! | GTTGCTTTAGCAAGATATCC+AGG | - | chr3_1:23804195-23804214 | None:intergenic | 40.0% |
| GATATCTTGCTAAAGCAACC+AGG | + | chr3_1:23804196-23804215 | Msa0353620:CDS | 40.0% | |
| !! | TTTTGGATTGTTGGTGAGGT+GGG | - | chr3_1:23804282-23804301 | None:intergenic | 40.0% |
| ! | TGTCTTTTGGATTGTTGGTG+AGG | - | chr3_1:23804286-23804305 | None:intergenic | 40.0% |
| !! | AACTAGTTCTGTAGGTTGGA+CGG | - | chr3_1:23804358-23804377 | None:intergenic | 40.0% |
| ! | AGCTAGATTACTAGGTTGGA+CGG | - | chr3_1:23804421-23804440 | None:intergenic | 40.0% |
| !! | AAGTTGGTGCTAATGCAATG+AGG | + | chr3_1:23804791-23804810 | Msa0353620:CDS | 40.0% |
| ATGCAATGAGGATGGCTATT+AGG | + | chr3_1:23804803-23804822 | Msa0353620:CDS | 40.0% | |
| TGGCTATTAGGCGTCAATTT+CGG | + | chr3_1:23804815-23804834 | Msa0353620:CDS | 40.0% | |
| !!! | TTCGGGATGTTTTTAGGTGT+TGG | + | chr3_1:23804833-23804852 | Msa0353620:CDS | 40.0% |
| !!! | TCGGGATGTTTTTAGGTGTT+GGG | + | chr3_1:23804834-23804853 | Msa0353620:CDS | 40.0% |
| GTTGCAAACCATAGATCTTG+AGG | - | chr3_1:23804868-23804887 | None:intergenic | 40.0% | |
| ! | GGTTTGCAACATTTTCGGTA+AGG | + | chr3_1:23804878-23804897 | Msa0353620:intron | 40.0% |
| AAGAGTTCATCAGGATGGAT+AGG | - | chr3_1:23805390-23805409 | None:intergenic | 40.0% | |
| TCTTCTTGGCTACTAGTAAG+AGG | + | chr3_1:23805406-23805425 | Msa0353620:CDS | 40.0% | |
| TAATGGTGATATGCAAGAGG+TGG | + | chr3_1:23806010-23806029 | Msa0353620:CDS | 40.0% | |
| CGAGGTAATTGTTATCGTAC+TGG | + | chr3_1:23806082-23806101 | Msa0353620:intron | 40.0% | |
| ATGTCGTCCTCCTAAAAATG+AGG | + | chr3_1:23806153-23806172 | Msa0353620:intron | 40.0% | |
| GGTGATAGAAATGTTTCGTC+AGG | + | chr3_1:23806174-23806193 | Msa0353620:intron | 40.0% | |
| GATAGAAATGTTTCGTCAGG+AGG | + | chr3_1:23806177-23806196 | Msa0353620:intron | 40.0% | |
| AATCAGCTTCAGTAGCTCTT+TGG | - | chr3_1:23806237-23806256 | None:intergenic | 40.0% | |
| TAATACCTTCGAACGAGCAT+TGG | - | chr3_1:23804169-23804188 | None:intergenic | 40.0% | |
| ! | GTTGCTTTAGCAAGATATCC+AGG | - | chr3_1:23804195-23804214 | None:intergenic | 40.0% |
| GATATCTTGCTAAAGCAACC+AGG | + | chr3_1:23804196-23804215 | Msa0353620:CDS | 40.0% | |
| !! | TTTTGGATTGTTGGTGAGGT+GGG | - | chr3_1:23804282-23804301 | None:intergenic | 40.0% |
| ! | TGTCTTTTGGATTGTTGGTG+AGG | - | chr3_1:23804286-23804305 | None:intergenic | 40.0% |
| !! | AACTAGTTCTGTAGGTTGGA+CGG | - | chr3_1:23804358-23804377 | None:intergenic | 40.0% |
| ! | AGCTAGATTACTAGGTTGGA+CGG | - | chr3_1:23804421-23804440 | None:intergenic | 40.0% |
| !! | AAGTTGGTGCTAATGCAATG+AGG | + | chr3_1:23804791-23804810 | Msa0353620:CDS | 40.0% |
| ATGCAATGAGGATGGCTATT+AGG | + | chr3_1:23804803-23804822 | Msa0353620:CDS | 40.0% | |
| TGGCTATTAGGCGTCAATTT+CGG | + | chr3_1:23804815-23804834 | Msa0353620:CDS | 40.0% | |
| !!! | TTCGGGATGTTTTTAGGTGT+TGG | + | chr3_1:23804833-23804852 | Msa0353620:CDS | 40.0% |
| !!! | TCGGGATGTTTTTAGGTGTT+GGG | + | chr3_1:23804834-23804853 | Msa0353620:CDS | 40.0% |
| GTTGCAAACCATAGATCTTG+AGG | - | chr3_1:23804868-23804887 | None:intergenic | 40.0% | |
| ! | GGTTTGCAACATTTTCGGTA+AGG | + | chr3_1:23804878-23804897 | Msa0353620:intron | 40.0% |
| AAGAGTTCATCAGGATGGAT+AGG | - | chr3_1:23805390-23805409 | None:intergenic | 40.0% | |
| TCTTCTTGGCTACTAGTAAG+AGG | + | chr3_1:23805406-23805425 | Msa0353620:CDS | 40.0% | |
| TAATGGTGATATGCAAGAGG+TGG | + | chr3_1:23806010-23806029 | Msa0353620:CDS | 40.0% | |
| CGAGGTAATTGTTATCGTAC+TGG | + | chr3_1:23806082-23806101 | Msa0353620:intron | 40.0% | |
| ATGTCGTCCTCCTAAAAATG+AGG | + | chr3_1:23806153-23806172 | Msa0353620:intron | 40.0% | |
| GGTGATAGAAATGTTTCGTC+AGG | + | chr3_1:23806174-23806193 | Msa0353620:intron | 40.0% | |
| GATAGAAATGTTTCGTCAGG+AGG | + | chr3_1:23806177-23806196 | Msa0353620:intron | 40.0% | |
| AATCAGCTTCAGTAGCTCTT+TGG | - | chr3_1:23806237-23806256 | None:intergenic | 40.0% | |
| !! | CGTTCGAAGGTATTACAACC+TGG | + | chr3_1:23804174-23804193 | Msa0353620:CDS | 45.0% |
| GTTGGCTACAACAAGTTTCC+TGG | - | chr3_1:23804217-23804236 | None:intergenic | 45.0% | |
| !!! | GTGGCAACCCCAGTTTTTTT+CGG | - | chr3_1:23804248-23804267 | None:intergenic | 45.0% |
| GAAAAAAACTGGGGTTGCCA+CGG | + | chr3_1:23804247-23804266 | Msa0353620:CDS | 45.0% | |
| !! | CTTTTGGATTGTTGGTGAGG+TGG | - | chr3_1:23804283-23804302 | None:intergenic | 45.0% |
| !! | GGACCACAGTTGATGTCTTT+TGG | - | chr3_1:23804299-23804318 | None:intergenic | 45.0% |
| !! | GGACAACTAGTTCTGTAGGT+TGG | - | chr3_1:23804362-23804381 | None:intergenic | 45.0% |
| !! | GGTTGGACAACTAGTTCTGT+AGG | - | chr3_1:23804366-23804385 | None:intergenic | 45.0% |
| GGACAGCTAGATTACTAGGT+TGG | - | chr3_1:23804425-23804444 | None:intergenic | 45.0% | |
| GGTTGGACAGCTAGATTACT+AGG | - | chr3_1:23804429-23804448 | None:intergenic | 45.0% | |
| CAGATGATCATCCTCCTCAA+GGG | - | chr3_1:23804511-23804530 | None:intergenic | 45.0% | |
| AAACACACATACCGAGCAAG+AGG | + | chr3_1:23804548-23804567 | Msa0353620:CDS | 45.0% | |
| AAGACCATCATACGCCCAAT+TGG | + | chr3_1:23804594-23804613 | Msa0353620:CDS | 45.0% | |
| TTGACCAATTGGGCGTATGA+TGG | - | chr3_1:23804601-23804620 | None:intergenic | 45.0% | |
| ATCATACGCCCAATTGGTCA+AGG | + | chr3_1:23804600-23804619 | Msa0353620:CDS | 45.0% | |
| TCATACGCCCAATTGGTCAA+GGG | + | chr3_1:23804601-23804620 | Msa0353620:CDS | 45.0% | |
| GCATTAGCACCAACTTTGCT+AGG | - | chr3_1:23804787-23804806 | None:intergenic | 45.0% | |
| ! | TGGTGCTAATGCAATGAGGA+TGG | + | chr3_1:23804795-23804814 | Msa0353620:CDS | 45.0% |
| GGCTATTAGGCGTCAATTTC+GGG | + | chr3_1:23804816-23804835 | Msa0353620:CDS | 45.0% | |
| ! | AATGTGGTGCCTTGTTCCTT+TGG | + | chr3_1:23804935-23804954 | Msa0353620:intron | 45.0% |
| ! | CATATTTCTGCAGCAGCCAA+AGG | - | chr3_1:23804954-23804973 | None:intergenic | 45.0% |
| ! | GCATGTCAGTAAGGTGCTTT+GGG | - | chr3_1:23805073-23805092 | None:intergenic | 45.0% |
| ! | AGCATGTCAGTAAGGTGCTT+TGG | - | chr3_1:23805074-23805093 | None:intergenic | 45.0% |
| ATAAGGGGGGGAAACCTAAA+TGG | + | chr3_1:23805108-23805127 | Msa0353620:CDS | 45.0% | |
| GAAACCTAAATGGATGGGAG+AGG | + | chr3_1:23805118-23805137 | Msa0353620:CDS | 45.0% | |
| ATGGGAGAGGATGCATATGA+TGG | + | chr3_1:23805131-23805150 | Msa0353620:CDS | 45.0% | |
| AATCGAGGTTCGAACAAAGC+AGG | + | chr3_1:23805209-23805228 | Msa0353620:CDS | 45.0% | |
| TGTCCATACCACAAGTCGTA+AGG | + | chr3_1:23805235-23805254 | Msa0353620:CDS | 45.0% | |
| CCAAGAAGAGTTCATCAGGA+TGG | - | chr3_1:23805395-23805414 | None:intergenic | 45.0% | |
| CCATCCTGATGAACTCTTCT+TGG | + | chr3_1:23805392-23805411 | Msa0353620:CDS | 45.0% | |
| GTAGCCAAGAAGAGTTCATC+AGG | - | chr3_1:23805399-23805418 | None:intergenic | 45.0% | |
| GCTACTAGTAAGAGGAAGTC+TGG | + | chr3_1:23805414-23805433 | Msa0353620:CDS | 45.0% | |
| TAAGAGGAAGTCTGGCGATT+GGG | + | chr3_1:23805422-23805441 | Msa0353620:CDS | 45.0% | |
| CAATCTTCGTTAGCTGAGTC+AGG | - | chr3_1:23805980-23805999 | None:intergenic | 45.0% | |
| TGATTCAGATGACTTACCCC+TGG | - | chr3_1:23806130-23806149 | None:intergenic | 45.0% | |
| !! | CGTTCGAAGGTATTACAACC+TGG | + | chr3_1:23804174-23804193 | Msa0353620:CDS | 45.0% |
| GTTGGCTACAACAAGTTTCC+TGG | - | chr3_1:23804217-23804236 | None:intergenic | 45.0% | |
| !!! | GTGGCAACCCCAGTTTTTTT+CGG | - | chr3_1:23804248-23804267 | None:intergenic | 45.0% |
| GAAAAAAACTGGGGTTGCCA+CGG | + | chr3_1:23804247-23804266 | Msa0353620:CDS | 45.0% | |
| !! | CTTTTGGATTGTTGGTGAGG+TGG | - | chr3_1:23804283-23804302 | None:intergenic | 45.0% |
| !! | GGACCACAGTTGATGTCTTT+TGG | - | chr3_1:23804299-23804318 | None:intergenic | 45.0% |
| !! | GGACAACTAGTTCTGTAGGT+TGG | - | chr3_1:23804362-23804381 | None:intergenic | 45.0% |
| !! | GGTTGGACAACTAGTTCTGT+AGG | - | chr3_1:23804366-23804385 | None:intergenic | 45.0% |
| GGACAGCTAGATTACTAGGT+TGG | - | chr3_1:23804425-23804444 | None:intergenic | 45.0% | |
| GGTTGGACAGCTAGATTACT+AGG | - | chr3_1:23804429-23804448 | None:intergenic | 45.0% | |
| CAGATGATCATCCTCCTCAA+GGG | - | chr3_1:23804511-23804530 | None:intergenic | 45.0% | |
| AAACACACATACCGAGCAAG+AGG | + | chr3_1:23804548-23804567 | Msa0353620:CDS | 45.0% | |
| AAGACCATCATACGCCCAAT+TGG | + | chr3_1:23804594-23804613 | Msa0353620:CDS | 45.0% | |
| TTGACCAATTGGGCGTATGA+TGG | - | chr3_1:23804601-23804620 | None:intergenic | 45.0% | |
| ATCATACGCCCAATTGGTCA+AGG | + | chr3_1:23804600-23804619 | Msa0353620:CDS | 45.0% | |
| TCATACGCCCAATTGGTCAA+GGG | + | chr3_1:23804601-23804620 | Msa0353620:CDS | 45.0% | |
| GCATTAGCACCAACTTTGCT+AGG | - | chr3_1:23804787-23804806 | None:intergenic | 45.0% | |
| ! | TGGTGCTAATGCAATGAGGA+TGG | + | chr3_1:23804795-23804814 | Msa0353620:CDS | 45.0% |
| GGCTATTAGGCGTCAATTTC+GGG | + | chr3_1:23804816-23804835 | Msa0353620:CDS | 45.0% | |
| ! | AATGTGGTGCCTTGTTCCTT+TGG | + | chr3_1:23804935-23804954 | Msa0353620:intron | 45.0% |
| ! | CATATTTCTGCAGCAGCCAA+AGG | - | chr3_1:23804954-23804973 | None:intergenic | 45.0% |
| ! | GCATGTCAGTAAGGTGCTTT+GGG | - | chr3_1:23805073-23805092 | None:intergenic | 45.0% |
| ! | AGCATGTCAGTAAGGTGCTT+TGG | - | chr3_1:23805074-23805093 | None:intergenic | 45.0% |
| ATAAGGGGGGGAAACCTAAA+TGG | + | chr3_1:23805108-23805127 | Msa0353620:CDS | 45.0% | |
| GAAACCTAAATGGATGGGAG+AGG | + | chr3_1:23805118-23805137 | Msa0353620:CDS | 45.0% | |
| ATGGGAGAGGATGCATATGA+TGG | + | chr3_1:23805131-23805150 | Msa0353620:CDS | 45.0% | |
| AATCGAGGTTCGAACAAAGC+AGG | + | chr3_1:23805209-23805228 | Msa0353620:CDS | 45.0% | |
| TGTCCATACCACAAGTCGTA+AGG | + | chr3_1:23805235-23805254 | Msa0353620:CDS | 45.0% | |
| CCAAGAAGAGTTCATCAGGA+TGG | - | chr3_1:23805395-23805414 | None:intergenic | 45.0% | |
| CCATCCTGATGAACTCTTCT+TGG | + | chr3_1:23805392-23805411 | Msa0353620:CDS | 45.0% | |
| GTAGCCAAGAAGAGTTCATC+AGG | - | chr3_1:23805399-23805418 | None:intergenic | 45.0% | |
| GCTACTAGTAAGAGGAAGTC+TGG | + | chr3_1:23805414-23805433 | Msa0353620:CDS | 45.0% | |
| TAAGAGGAAGTCTGGCGATT+GGG | + | chr3_1:23805422-23805441 | Msa0353620:CDS | 45.0% | |
| CAATCTTCGTTAGCTGAGTC+AGG | - | chr3_1:23805980-23805999 | None:intergenic | 45.0% | |
| TGATTCAGATGACTTACCCC+TGG | - | chr3_1:23806130-23806149 | None:intergenic | 45.0% | |
| TTCCACCAATGCTCGTTCGA+AGG | + | chr3_1:23804161-23804180 | Msa0353620:CDS | 50.0% | |
| !! | TACCTTCGAACGAGCATTGG+TGG | - | chr3_1:23804166-23804185 | None:intergenic | 50.0% |
| !!! | TTTTTTTCGGCGCGTCTCGT+TGG | - | chr3_1:23804235-23804254 | None:intergenic | 50.0% |
| GAGACGCGCCGAAAAAAACT+GGG | + | chr3_1:23804237-23804256 | Msa0353620:CDS | 50.0% | |
| AGACGCGCCGAAAAAAACTG+GGG | + | chr3_1:23804238-23804257 | Msa0353620:CDS | 50.0% | |
| ! | AGATTACTAGGTTGGACGGC+TGG | - | chr3_1:23804417-23804436 | None:intergenic | 50.0% |
| ACTTGAGAAGGTAGGACCAC+TGG | - | chr3_1:23804465-23804484 | None:intergenic | 50.0% | |
| GTGCAGTCACTTGAGAAGGT+AGG | - | chr3_1:23804473-23804492 | None:intergenic | 50.0% | |
| ACCTTCTCAAGTGACTGCAC+CGG | + | chr3_1:23804473-23804492 | Msa0353620:CDS | 50.0% | |
| TCAAGGGAAGGTAGTGATGC+CGG | - | chr3_1:23804495-23804514 | None:intergenic | 50.0% | |
| ATCACTACCTTCCCTTGAGG+AGG | + | chr3_1:23804497-23804516 | Msa0353620:CDS | 50.0% | |
| TGATCATCCTCCTCAAGGGA+AGG | - | chr3_1:23804507-23804526 | None:intergenic | 50.0% | |
| GCAGATGATCATCCTCCTCA+AGG | - | chr3_1:23804512-23804531 | None:intergenic | 50.0% | |
| GAGGAGGATGATCATCTGCA+AGG | + | chr3_1:23804513-23804532 | Msa0353620:CDS | 50.0% | |
| TGATCATCTGCAAGGTGTGC+AGG | + | chr3_1:23804521-23804540 | Msa0353620:CDS | 50.0% | |
| GATCATCTGCAAGGTGTGCA+GGG | + | chr3_1:23804522-23804541 | Msa0353620:CDS | 50.0% | |
| TTTATCAGGGGCCTCTTGCT+CGG | - | chr3_1:23804562-23804581 | None:intergenic | 50.0% | |
| GGGGGGAAACCTAAATGGAT+GGG | + | chr3_1:23805113-23805132 | Msa0353620:CDS | 50.0% | |
| GCATCCTCTCCCATCCATTT+AGG | - | chr3_1:23805125-23805144 | None:intergenic | 50.0% | |
| GAGCCTTACGACTTGTGGTA+TGG | - | chr3_1:23805241-23805260 | None:intergenic | 50.0% | |
| CCATGTCTAGTGCAATGTCG+TGG | - | chr3_1:23805265-23805284 | None:intergenic | 50.0% | |
| CCACGACATTGCACTAGACA+TGG | + | chr3_1:23805262-23805281 | Msa0353620:CDS | 50.0% | |
| GTAAGAGGAAGTCTGGCGAT+TGG | + | chr3_1:23805421-23805440 | Msa0353620:CDS | 50.0% | |
| GGTGATATGCAAGAGGTGGA+CGG | + | chr3_1:23806014-23806033 | Msa0353620:CDS | 50.0% | |
| !!! | TGTTTTTGGGGGTTGTCTCG+AGG | + | chr3_1:23806064-23806083 | Msa0353620:CDS | 50.0% |
| TTCCACCAATGCTCGTTCGA+AGG | + | chr3_1:23804161-23804180 | Msa0353620:CDS | 50.0% | |
| !! | TACCTTCGAACGAGCATTGG+TGG | - | chr3_1:23804166-23804185 | None:intergenic | 50.0% |
| !!! | TTTTTTTCGGCGCGTCTCGT+TGG | - | chr3_1:23804235-23804254 | None:intergenic | 50.0% |
| GAGACGCGCCGAAAAAAACT+GGG | + | chr3_1:23804237-23804256 | Msa0353620:CDS | 50.0% | |
| AGACGCGCCGAAAAAAACTG+GGG | + | chr3_1:23804238-23804257 | Msa0353620:CDS | 50.0% | |
| ! | AGATTACTAGGTTGGACGGC+TGG | - | chr3_1:23804417-23804436 | None:intergenic | 50.0% |
| ACTTGAGAAGGTAGGACCAC+TGG | - | chr3_1:23804465-23804484 | None:intergenic | 50.0% | |
| GTGCAGTCACTTGAGAAGGT+AGG | - | chr3_1:23804473-23804492 | None:intergenic | 50.0% | |
| ACCTTCTCAAGTGACTGCAC+CGG | + | chr3_1:23804473-23804492 | Msa0353620:CDS | 50.0% | |
| TCAAGGGAAGGTAGTGATGC+CGG | - | chr3_1:23804495-23804514 | None:intergenic | 50.0% | |
| ATCACTACCTTCCCTTGAGG+AGG | + | chr3_1:23804497-23804516 | Msa0353620:CDS | 50.0% | |
| TGATCATCCTCCTCAAGGGA+AGG | - | chr3_1:23804507-23804526 | None:intergenic | 50.0% | |
| GCAGATGATCATCCTCCTCA+AGG | - | chr3_1:23804512-23804531 | None:intergenic | 50.0% | |
| GAGGAGGATGATCATCTGCA+AGG | + | chr3_1:23804513-23804532 | Msa0353620:CDS | 50.0% | |
| TGATCATCTGCAAGGTGTGC+AGG | + | chr3_1:23804521-23804540 | Msa0353620:CDS | 50.0% | |
| GATCATCTGCAAGGTGTGCA+GGG | + | chr3_1:23804522-23804541 | Msa0353620:CDS | 50.0% | |
| TTTATCAGGGGCCTCTTGCT+CGG | - | chr3_1:23804562-23804581 | None:intergenic | 50.0% | |
| GGGGGGAAACCTAAATGGAT+GGG | + | chr3_1:23805113-23805132 | Msa0353620:CDS | 50.0% | |
| GCATCCTCTCCCATCCATTT+AGG | - | chr3_1:23805125-23805144 | None:intergenic | 50.0% | |
| GAGCCTTACGACTTGTGGTA+TGG | - | chr3_1:23805241-23805260 | None:intergenic | 50.0% | |
| CCATGTCTAGTGCAATGTCG+TGG | - | chr3_1:23805265-23805284 | None:intergenic | 50.0% | |
| CCACGACATTGCACTAGACA+TGG | + | chr3_1:23805262-23805281 | Msa0353620:CDS | 50.0% | |
| GTAAGAGGAAGTCTGGCGAT+TGG | + | chr3_1:23805421-23805440 | Msa0353620:CDS | 50.0% | |
| GGTGATATGCAAGAGGTGGA+CGG | + | chr3_1:23806014-23806033 | Msa0353620:CDS | 50.0% | |
| !!! | TGTTTTTGGGGGTTGTCTCG+AGG | + | chr3_1:23806064-23806083 | Msa0353620:CDS | 50.0% |
| CGAGACGCGCCGAAAAAAAC+TGG | + | chr3_1:23804236-23804255 | Msa0353620:CDS | 55.0% | |
| ! | GTTGGTGAGGTGGGTTCAAC+TGG | - | chr3_1:23804273-23804292 | None:intergenic | 55.0% |
| ! | AGTTCTGTAGGTTGGACGGC+TGG | - | chr3_1:23804354-23804373 | None:intergenic | 55.0% |
| ! | TACTAGGTTGGACGGCTGGT+CGG | - | chr3_1:23804413-23804432 | None:intergenic | 55.0% |
| !! | GTAGGACCACTGGTGTTGGT+GGG | - | chr3_1:23804455-23804474 | None:intergenic | 55.0% |
| GAAGGTAGGACCACTGGTGT+TGG | - | chr3_1:23804459-23804478 | None:intergenic | 55.0% | |
| GGCATCACTACCTTCCCTTG+AGG | + | chr3_1:23804494-23804513 | Msa0353620:CDS | 55.0% | |
| CTGCAGCAGCCAAAGGAACA+AGG | - | chr3_1:23804947-23804966 | None:intergenic | 55.0% | |
| GGGGGGGAAACCTAAATGGA+TGG | + | chr3_1:23805112-23805131 | Msa0353620:CDS | 55.0% | |
| GTGGTGAGCCTTACGACTTG+TGG | - | chr3_1:23805246-23805265 | None:intergenic | 55.0% | |
| !! | GATTGGGTTGACAGTCGTGC+TGG | + | chr3_1:23805438-23805457 | Msa0353620:CDS | 55.0% |
| CGAGACGCGCCGAAAAAAAC+TGG | + | chr3_1:23804236-23804255 | Msa0353620:CDS | 55.0% | |
| ! | GTTGGTGAGGTGGGTTCAAC+TGG | - | chr3_1:23804273-23804292 | None:intergenic | 55.0% |
| ! | AGTTCTGTAGGTTGGACGGC+TGG | - | chr3_1:23804354-23804373 | None:intergenic | 55.0% |
| ! | TACTAGGTTGGACGGCTGGT+CGG | - | chr3_1:23804413-23804432 | None:intergenic | 55.0% |
| !! | GTAGGACCACTGGTGTTGGT+GGG | - | chr3_1:23804455-23804474 | None:intergenic | 55.0% |
| GAAGGTAGGACCACTGGTGT+TGG | - | chr3_1:23804459-23804478 | None:intergenic | 55.0% | |
| GGCATCACTACCTTCCCTTG+AGG | + | chr3_1:23804494-23804513 | Msa0353620:CDS | 55.0% | |
| CTGCAGCAGCCAAAGGAACA+AGG | - | chr3_1:23804947-23804966 | None:intergenic | 55.0% | |
| GGGGGGGAAACCTAAATGGA+TGG | + | chr3_1:23805112-23805131 | Msa0353620:CDS | 55.0% | |
| GTGGTGAGCCTTACGACTTG+TGG | - | chr3_1:23805246-23805265 | None:intergenic | 55.0% | |
| !! | GATTGGGTTGACAGTCGTGC+TGG | + | chr3_1:23805438-23805457 | Msa0353620:CDS | 55.0% |
| ! | GGGAAGTTGGATGGCTGGTC+GGG | - | chr3_1:23804328-23804347 | None:intergenic | 60.0% |
| GGGGAAGTTGGATGGCTGGT+CGG | - | chr3_1:23804329-23804348 | None:intergenic | 60.0% | |
| ! | TGTAGGTTGGACGGCTGGTC+GGG | - | chr3_1:23804349-23804368 | None:intergenic | 60.0% |
| ! | CTGTAGGTTGGACGGCTGGT+CGG | - | chr3_1:23804350-23804369 | None:intergenic | 60.0% |
| ! | ACTAGGTTGGACGGCTGGTC+GGG | - | chr3_1:23804412-23804431 | None:intergenic | 60.0% |
| !! | CTGGTGTTGGTGGGTCAGGT+TGG | - | chr3_1:23804446-23804465 | None:intergenic | 60.0% |
| ACCTGACCCACCAACACCAG+TGG | + | chr3_1:23804446-23804465 | Msa0353620:CDS | 60.0% | |
| !! | ACCACTGGTGTTGGTGGGTC+AGG | - | chr3_1:23804450-23804469 | None:intergenic | 60.0% |
| ! | GGTAGGACCACTGGTGTTGG+TGG | - | chr3_1:23804456-23804475 | None:intergenic | 60.0% |
| GCCGGTGCAGTCACTTGAGA+AGG | - | chr3_1:23804477-23804496 | None:intergenic | 60.0% | |
| ! | GGGAAGTTGGATGGCTGGTC+GGG | - | chr3_1:23804328-23804347 | None:intergenic | 60.0% |
| GGGGAAGTTGGATGGCTGGT+CGG | - | chr3_1:23804329-23804348 | None:intergenic | 60.0% | |
| ! | TGTAGGTTGGACGGCTGGTC+GGG | - | chr3_1:23804349-23804368 | None:intergenic | 60.0% |
| ! | CTGTAGGTTGGACGGCTGGT+CGG | - | chr3_1:23804350-23804369 | None:intergenic | 60.0% |
| ! | ACTAGGTTGGACGGCTGGTC+GGG | - | chr3_1:23804412-23804431 | None:intergenic | 60.0% |
| !! | CTGGTGTTGGTGGGTCAGGT+TGG | - | chr3_1:23804446-23804465 | None:intergenic | 60.0% |
| ACCTGACCCACCAACACCAG+TGG | + | chr3_1:23804446-23804465 | Msa0353620:CDS | 60.0% | |
| !! | ACCACTGGTGTTGGTGGGTC+AGG | - | chr3_1:23804450-23804469 | None:intergenic | 60.0% |
| ! | GGTAGGACCACTGGTGTTGG+TGG | - | chr3_1:23804456-23804475 | None:intergenic | 60.0% |
| GCCGGTGCAGTCACTTGAGA+AGG | - | chr3_1:23804477-23804496 | None:intergenic | 60.0% | |
| ! | GAGGTGGGTTCAACTGGCCG+TGG | - | chr3_1:23804267-23804286 | None:intergenic | 65.0% |
| ! | AGTTGGATGGCTGGTCGGGC+AGG | - | chr3_1:23804324-23804343 | None:intergenic | 65.0% |
| GGTCGGGGAAGTTGGATGGC+TGG | - | chr3_1:23804333-23804352 | None:intergenic | 65.0% | |
| ! | GGCTGGTCGGGGAAGTTGGA+TGG | - | chr3_1:23804337-23804356 | None:intergenic | 65.0% |
| ! | GTAGGTTGGACGGCTGGTCG+GGG | - | chr3_1:23804348-23804367 | None:intergenic | 65.0% |
| ! | GGGAGGTTGGATGGCTGGTC+GGG | - | chr3_1:23804391-23804410 | None:intergenic | 65.0% |
| GGGGAGGTTGGATGGCTGGT+CGG | - | chr3_1:23804392-23804411 | None:intergenic | 65.0% | |
| ! | CTAGGTTGGACGGCTGGTCG+GGG | - | chr3_1:23804411-23804430 | None:intergenic | 65.0% |
| GGCTGCAGCAGCACGTGTTG+AGG | + | chr3_1:23806198-23806217 | Msa0353620:CDS | 65.0% | |
| ! | GAGGTGGGTTCAACTGGCCG+TGG | - | chr3_1:23804267-23804286 | None:intergenic | 65.0% |
| ! | AGTTGGATGGCTGGTCGGGC+AGG | - | chr3_1:23804324-23804343 | None:intergenic | 65.0% |
| GGTCGGGGAAGTTGGATGGC+TGG | - | chr3_1:23804333-23804352 | None:intergenic | 65.0% | |
| ! | GGCTGGTCGGGGAAGTTGGA+TGG | - | chr3_1:23804337-23804356 | None:intergenic | 65.0% |
| ! | GTAGGTTGGACGGCTGGTCG+GGG | - | chr3_1:23804348-23804367 | None:intergenic | 65.0% |
| ! | GGGAGGTTGGATGGCTGGTC+GGG | - | chr3_1:23804391-23804410 | None:intergenic | 65.0% |
| GGGGAGGTTGGATGGCTGGT+CGG | - | chr3_1:23804392-23804411 | None:intergenic | 65.0% | |
| ! | CTAGGTTGGACGGCTGGTCG+GGG | - | chr3_1:23804411-23804430 | None:intergenic | 65.0% |
| GGCTGCAGCAGCACGTGTTG+AGG | + | chr3_1:23806198-23806217 | Msa0353620:CDS | 65.0% | |
| ! | GGATGGCTGGTCGGGCAGGT+TGG | - | chr3_1:23804320-23804339 | None:intergenic | 70.0% |
| ! | GGACGGCTGGTCGGGGAAGT+TGG | - | chr3_1:23804341-23804360 | None:intergenic | 70.0% |
| ! | GGATGGCTGGTCGGGCAGGT+TGG | - | chr3_1:23804320-23804339 | None:intergenic | 70.0% |
| ! | GGTTGGATGGCTGGTCGGGC+AGG | - | chr3_1:23804387-23804406 | None:intergenic | 70.0% |
| GGTCGGGGAGGTTGGATGGC+TGG | - | chr3_1:23804396-23804415 | None:intergenic | 70.0% | |
| ! | GGCTGGTCGGGGAGGTTGGA+TGG | - | chr3_1:23804400-23804419 | None:intergenic | 70.0% |
| ! | GGATGGCTGGTCGGGCAGGT+TGG | - | chr3_1:23804320-23804339 | None:intergenic | 70.0% |
| ! | GGACGGCTGGTCGGGGAAGT+TGG | - | chr3_1:23804341-23804360 | None:intergenic | 70.0% |
| ! | GGATGGCTGGTCGGGCAGGT+TGG | - | chr3_1:23804320-23804339 | None:intergenic | 70.0% |
| ! | GGTTGGATGGCTGGTCGGGC+AGG | - | chr3_1:23804387-23804406 | None:intergenic | 70.0% |
| GGTCGGGGAGGTTGGATGGC+TGG | - | chr3_1:23804396-23804415 | None:intergenic | 70.0% | |
| ! | GGCTGGTCGGGGAGGTTGGA+TGG | - | chr3_1:23804400-23804419 | None:intergenic | 70.0% |
| ! | GGACGGCTGGTCGGGGAGGT+TGG | - | chr3_1:23804404-23804423 | None:intergenic | 75.0% |
| ! | GGTTGGACGGCTGGTCGGGG+AGG | - | chr3_1:23804345-23804364 | None:intergenic | 75.0% |
| ! | GGACGGCTGGTCGGGGAGGT+TGG | - | chr3_1:23804404-23804423 | None:intergenic | 75.0% |
| ! | GGTTGGACGGCTGGTCGGGG+AGG | - | chr3_1:23804345-23804364 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 23804046 | 23806258 | 23804046 | ID=Msa0353620;Name=Msa0353620 |
| chr3_1 | mRNA | 23804046 | 23806258 | 23804046 | ID=Msa0353620-mRNA-1;Parent=Msa0353620;Name=Msa0353620-mRNA-1;_AED=0.17;_eAED=0.17;_QI=77|0.8|0.66|1|1|1|6|0|394 |
| chr3_1 | exon | 23804046 | 23804622 | 23804046 | ID=Msa0353620-mRNA-1:exon:5322;Parent=Msa0353620-mRNA-1 |
| chr3_1 | exon | 23804777 | 23804894 | 23804777 | ID=Msa0353620-mRNA-1:exon:5323;Parent=Msa0353620-mRNA-1 |
| chr3_1 | exon | 23805008 | 23805283 | 23805008 | ID=Msa0353620-mRNA-1:exon:5324;Parent=Msa0353620-mRNA-1 |
| chr3_1 | exon | 23805369 | 23805470 | 23805369 | ID=Msa0353620-mRNA-1:exon:5325;Parent=Msa0353620-mRNA-1 |
| chr3_1 | exon | 23805960 | 23806085 | 23805960 | ID=Msa0353620-mRNA-1:exon:5326;Parent=Msa0353620-mRNA-1 |
| chr3_1 | exon | 23806196 | 23806258 | 23806196 | ID=Msa0353620-mRNA-1:exon:5327;Parent=Msa0353620-mRNA-1 |
| chr3_1 | five_prime_UTR | 23804046 | 23804122 | 23804046 | ID=Msa0353620-mRNA-1:five_prime_utr;Parent=Msa0353620-mRNA-1 |
| chr3_1 | CDS | 23804123 | 23804622 | 23804123 | ID=Msa0353620-mRNA-1:cds;Parent=Msa0353620-mRNA-1 |
| chr3_1 | CDS | 23804777 | 23804894 | 23804777 | ID=Msa0353620-mRNA-1:cds;Parent=Msa0353620-mRNA-1 |
| chr3_1 | CDS | 23805008 | 23805283 | 23805008 | ID=Msa0353620-mRNA-1:cds;Parent=Msa0353620-mRNA-1 |
| chr3_1 | CDS | 23805369 | 23805470 | 23805369 | ID=Msa0353620-mRNA-1:cds;Parent=Msa0353620-mRNA-1 |
| chr3_1 | CDS | 23805960 | 23806085 | 23805960 | ID=Msa0353620-mRNA-1:cds;Parent=Msa0353620-mRNA-1 |
| chr3_1 | CDS | 23806196 | 23806258 | 23806196 | ID=Msa0353620-mRNA-1:cds;Parent=Msa0353620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
