AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1091980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091980 MtrunA17_Chr7g0232921 63.830 94 34 0 9 102 108 201 2.81e-41 137
Msa1091980 MtrunA17_Chr8g0366201 56.818 88 37 1 67 154 2 88 7.12e-31 107
Msa1091980 MtrunA17_Chr4g0023021 50.575 87 43 0 68 154 5 91 1.57e-29 104
Msa1091980 MtrunA17_Chr8g0365871 56.757 74 32 0 68 141 14 87 1.04e-28 102
Msa1091980 MtrunA17_Chr6g0473651 36.752 117 62 3 49 158 73 184 5.32e-17 77.0
Msa1091980 MtrunA17_Chr6g0473921 31.579 114 72 2 48 160 2 110 5.27e-15 68.2
Msa1091980 MtrunA17_Chr6g0473661 33.929 112 68 2 54 164 369 475 1.57e-13 67.4
Msa1091980 MtrunA17_Chr1g0156191 33.333 99 65 1 44 141 31 129 2.34e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 68 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCAATCTCATTGTGATT+TGG 0.281584 7_3:+7617489 None:intergenic
AGAAATTCATTCATTCGATA+TGG 0.286122 7_3:-7617401 Msa1091980:CDS
AAATCATGATTGACTGAAAA+AGG 0.286482 7_3:-7616779 Msa1091980:three_prime_UTR
ATGTACTAAAGTCTCCATTT+TGG 0.291471 7_3:-7616490 Msa1091980:three_prime_UTR
TAACAACATTCACATCTATA+TGG 0.294880 7_3:+7616712 None:intergenic
CACAAAATTCTCCCATCTTC+TGG 0.298930 7_3:-7617357 Msa1091980:CDS
TTCAAGGGTATTTGGTTTAG+AGG 0.311406 7_3:-7617535 Msa1091980:five_prime_UTR
TCCAGCCACATTAGCACATT+TGG 0.336574 7_3:+7616668 None:intergenic
ATTATAAGATTGGGTGTTAC+CGG 0.337980 7_3:-7616965 Msa1091980:CDS
GAAAACTGACATAACCAAAA+TGG 0.347743 7_3:+7616476 None:intergenic
GAAATCCATGAGGACCTTCC+AGG 0.356558 7_3:+7617069 None:intergenic
TTATTTGACTTTAGAGTGTA+TGG 0.358332 7_3:-7616897 Msa1091980:CDS
TACACCAGTGGAAGTTAATA+TGG 0.384671 7_3:+7616645 None:intergenic
CAATGTACTTACCAAGCTTC+TGG 0.388188 7_3:+7617304 None:intergenic
TAAAGGACAAATTATAAGAT+TGG 0.391020 7_3:-7616975 Msa1091980:CDS
AGGTTGTGTTACAGAGTAGA+AGG 0.405838 7_3:-7616759 Msa1091980:three_prime_UTR
CAAAGAAAATTCCATGATTA+CGG 0.407492 7_3:+7616539 None:intergenic
TCCTCAGCAGAAATTGTTGC+TGG 0.408451 7_3:-7617447 Msa1091980:CDS
TGGCTTCAAGTGAGAGTGCC+AGG 0.424618 7_3:-7616449 Msa1091980:three_prime_UTR
TCATTGTTGTTGATTACCTT+GGG 0.426570 7_3:-7617096 Msa1091980:CDS
CTATGGTCAGTGGCAAGCTC+TGG 0.427646 7_3:-7617017 Msa1091980:CDS
GATCCAAATCACAATGAGAT+TGG 0.430194 7_3:-7617492 Msa1091980:CDS
GCTCTTGACAGCAGCAACTA+AGG 0.430331 7_3:+7617775 None:intergenic
GAATGAATTTCTGTAGTCAT+AGG 0.439784 7_3:+7617412 None:intergenic
ATGAATTCAGTGCGCTCTGC+AGG 0.440156 7_3:+7617115 None:intergenic
CACTCTCACTTGAAGCCAAA+AGG 0.447023 7_3:+7616454 None:intergenic
GCGCTTTGTGACCGTAATCA+TGG 0.464370 7_3:-7616550 Msa1091980:three_prime_UTR
AAAGGACAAATTATAAGATT+GGG 0.468907 7_3:-7616974 Msa1091980:CDS
GTGCAGAAGCTGGGATGGCT+TGG 0.476564 7_3:-7617157 Msa1091980:intron
TTTGGATCATGTATTACAAA+AGG 0.483026 7_3:+7617507 None:intergenic
TCCAAATGTGCTAATGTGGC+TGG 0.483967 7_3:-7616669 Msa1091980:three_prime_UTR
TTCATTGTTGTTGATTACCT+TGG 0.487612 7_3:-7617097 Msa1091980:CDS
ACTCTAAAGTCAAATAATGC+AGG 0.487745 7_3:+7616903 None:intergenic
TTCTGCTGAGGATTGAATTG+AGG 0.488055 7_3:+7617458 None:intergenic
AACATCGTTGTTCGATTCAC+CGG 0.492245 7_3:+7616946 None:intergenic
TTAACTCCTTCACCAGAAGA+TGG 0.498394 7_3:+7617345 None:intergenic
TTGGTGTACGCATGTTTGCA+CGG 0.506355 7_3:+7616512 None:intergenic
AGACATTGGTAAGGAGATCC+TGG 0.508977 7_3:+7616431 None:intergenic
TTGATTACCTTGGGTACACC+TGG 0.531266 7_3:-7617087 Msa1091980:CDS
TCCAGCAACAATTTCTGCTG+AGG 0.539383 7_3:+7617446 None:intergenic
GTACACCTGGAAGGTCCTCA+TGG 0.545748 7_3:-7617074 Msa1091980:CDS
TGGACCATATTAACTTCCAC+TGG 0.549812 7_3:-7616649 Msa1091980:three_prime_UTR
AAGGTTAACGATACATATCA+TGG 0.550752 7_3:+7616389 None:intergenic
ATTGTGTGCAGAAGCTGGGA+TGG 0.553972 7_3:-7617162 Msa1091980:intron
TGATGTTACTACCAGAAGCT+TGG 0.565250 7_3:-7617315 Msa1091980:intron
TGGTGTACGCATGTTTGCAC+GGG 0.568837 7_3:+7616513 None:intergenic
ATTCTCCCATCTTCTGGTGA+AGG 0.571056 7_3:-7617351 Msa1091980:CDS
CTCTTGACAGCAGCAACTAA+GGG 0.571127 7_3:+7617776 None:intergenic
CTCTAAAGTCAAATAATGCA+GGG 0.574657 7_3:+7616904 None:intergenic
CTCAGTTGATAATAAGACAT+TGG 0.578860 7_3:+7616417 None:intergenic
TAACTCCTTCACCAGAAGAT+GGG 0.579136 7_3:+7617346 None:intergenic
GGTTATTGTGTGCAGAAGCT+GGG 0.582200 7_3:-7617166 Msa1091980:intron
TTACCTTGGGTACACCTGGA+AGG 0.591641 7_3:-7617083 Msa1091980:CDS
AGTGCACGCAGGTTGACTAA+AGG 0.592704 7_3:-7616992 Msa1091980:CDS
AAATGGAGACTTTAGTACAT+TGG 0.596447 7_3:+7616493 None:intergenic
TTGATAATAAGACATTGGTA+AGG 0.600708 7_3:+7616422 None:intergenic
ATGGATTTCTGTCATGATGA+AGG 0.601737 7_3:-7617055 Msa1091980:CDS
AATACCCTTGAAAAGCATGC+AGG 0.608287 7_3:+7617546 None:intergenic
AACTGTCGAAATTACACCAG+TGG 0.610725 7_3:+7616633 None:intergenic
TCTCTCCAAATGTGCTAATG+TGG 0.628942 7_3:-7616673 Msa1091980:three_prime_UTR
GTCTTATTATCAACTGAGAG+TGG 0.651419 7_3:-7616412 Msa1091980:three_prime_UTR
GGACCTTCCAGGTGTACCCA+AGG 0.652405 7_3:+7617080 None:intergenic
AAGCTCTGGTGAGTGCACGC+AGG 0.677308 7_3:-7617003 Msa1091980:CDS
TTAACAAAGTACATACCACA+TGG 0.700103 7_3:-7617745 Msa1091980:five_prime_UTR
TGCATGAATCATATTCCATG+TGG 0.712298 7_3:+7617730 None:intergenic
TCTGGTGAAGGAGTTAACAG+AGG 0.715932 7_3:-7617339 Msa1091980:CDS
TGCTGCTGTCAAGAGCGATG+TGG 0.743908 7_3:-7617768 Msa1091980:five_prime_UTR
CATCATGACAGAAATCCATG+AGG 0.770644 7_3:+7617059 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATATATGATCTTTAAA+TGG + chr7_3:7616932-7616951 None:intergenic 10.0%
!! AATTATATATGATCTTTAAA+TGG + chr7_3:7616932-7616951 None:intergenic 10.0%
!!! ATAAGATTTTTTTTTGACAA+TGG - chr7_3:7617315-7617334 Msa1091980:intron 15.0%
!!! ATAAGATTTTTTTTTGACAA+TGG - chr7_3:7617315-7617334 Msa1091980:intron 15.0%
!! CATACAGAATGAAAATTAAA+AGG + chr7_3:7616991-7617010 None:intergenic 20.0%
!!! CTTTTAATTTTCATTCTGTA+TGG - chr7_3:7616989-7617008 Msa1091980:CDS 20.0%
!! TAAAGGACAAATTATAAGAT+TGG - chr7_3:7617201-7617220 Msa1091980:intron 20.0%
!! AAAGGACAAATTATAAGATT+GGG - chr7_3:7617202-7617221 Msa1091980:intron 20.0%
!!! CTTTTTTTAAAGATGCAAAA+AGG - chr7_3:7617362-7617381 Msa1091980:CDS 20.0%
!! CATACAGAATGAAAATTAAA+AGG + chr7_3:7616991-7617010 None:intergenic 20.0%
!!! CTTTTAATTTTCATTCTGTA+TGG - chr7_3:7616989-7617008 Msa1091980:CDS 20.0%
!! TAAAGGACAAATTATAAGAT+TGG - chr7_3:7617201-7617220 Msa1091980:intron 20.0%
!! AAAGGACAAATTATAAGATT+GGG - chr7_3:7617202-7617221 Msa1091980:intron 20.0%
!!! CTTTTTTTAAAGATGCAAAA+AGG - chr7_3:7617362-7617381 Msa1091980:CDS 20.0%
!!! CTATTGTCATTTTAGAAGAA+GGG - chr7_3:7616600-7616619 Msa1091980:three_prime_UTR 25.0%
! TTTGGATCATGTATTACAAA+AGG + chr7_3:7616672-7616691 None:intergenic 25.0%
! AGAAATTCATTCATTCGATA+TGG - chr7_3:7616775-7616794 Msa1091980:three_prime_UTR 25.0%
!! TTTTGTTCATTTTGCATCTT+AGG - chr7_3:7616951-7616970 Msa1091980:CDS 25.0%
!! TTTGTTCATTTTGCATCTTA+GGG - chr7_3:7616952-7616971 Msa1091980:CDS 25.0%
!!! TTATTTGACTTTAGAGTGTA+TGG - chr7_3:7617279-7617298 Msa1091980:intron 25.0%
! AAATCATGATTGACTGAAAA+AGG - chr7_3:7617397-7617416 Msa1091980:CDS 25.0%
! TAACAACATTCACATCTATA+TGG + chr7_3:7617467-7617486 None:intergenic 25.0%
! CAAAGAAAATTCCATGATTA+CGG + chr7_3:7617640-7617659 None:intergenic 25.0%
!! TTGATAATAAGACATTGGTA+AGG + chr7_3:7617757-7617776 None:intergenic 25.0%
!!! CTATTGTCATTTTAGAAGAA+GGG - chr7_3:7616600-7616619 Msa1091980:three_prime_UTR 25.0%
! TTTGGATCATGTATTACAAA+AGG + chr7_3:7616672-7616691 None:intergenic 25.0%
! AGAAATTCATTCATTCGATA+TGG - chr7_3:7616775-7616794 Msa1091980:three_prime_UTR 25.0%
!! TTTTGTTCATTTTGCATCTT+AGG - chr7_3:7616951-7616970 Msa1091980:CDS 25.0%
!! TTTGTTCATTTTGCATCTTA+GGG - chr7_3:7616952-7616971 Msa1091980:CDS 25.0%
!!! TTATTTGACTTTAGAGTGTA+TGG - chr7_3:7617279-7617298 Msa1091980:intron 25.0%
! AAATCATGATTGACTGAAAA+AGG - chr7_3:7617397-7617416 Msa1091980:CDS 25.0%
! TAACAACATTCACATCTATA+TGG + chr7_3:7617467-7617486 None:intergenic 25.0%
! CAAAGAAAATTCCATGATTA+CGG + chr7_3:7617640-7617659 None:intergenic 25.0%
!! TTGATAATAAGACATTGGTA+AGG + chr7_3:7617757-7617776 None:intergenic 25.0%
TTAACAAAGTACATACCACA+TGG - chr7_3:7616431-7616450 Msa1091980:three_prime_UTR 30.0%
ATTAACATTAGACGAATGTC+AGG + chr7_3:7616553-7616572 None:intergenic 30.0%
!!! GCTATTGTCATTTTAGAAGA+AGG - chr7_3:7616599-7616618 Msa1091980:three_prime_UTR 30.0%
GAATGAATTTCTGTAGTCAT+AGG + chr7_3:7616767-7616786 None:intergenic 30.0%
TACATTGTATTTGATGCTCA+TGG - chr7_3:7616888-7616907 Msa1091980:CDS 30.0%
! TTCATTGTTGTTGATTACCT+TGG - chr7_3:7617079-7617098 Msa1091980:CDS 30.0%
! TCATTGTTGTTGATTACCTT+GGG - chr7_3:7617080-7617099 Msa1091980:CDS 30.0%
! ATTATAAGATTGGGTGTTAC+CGG - chr7_3:7617211-7617230 Msa1091980:intron 30.0%
!! CTCTAAAGTCAAATAATGCA+GGG + chr7_3:7617275-7617294 None:intergenic 30.0%
!! ACTCTAAAGTCAAATAATGC+AGG + chr7_3:7617276-7617295 None:intergenic 30.0%
TTAAAGATGCAAAAAGGTGA+TGG - chr7_3:7617368-7617387 Msa1091980:CDS 30.0%
AAATGGAGACTTTAGTACAT+TGG + chr7_3:7617686-7617705 None:intergenic 30.0%
! ATGTACTAAAGTCTCCATTT+TGG - chr7_3:7617686-7617705 Msa1091980:intron 30.0%
GAAAACTGACATAACCAAAA+TGG + chr7_3:7617703-7617722 None:intergenic 30.0%
!! CTCAGTTGATAATAAGACAT+TGG + chr7_3:7617762-7617781 None:intergenic 30.0%
TTAACAAAGTACATACCACA+TGG - chr7_3:7616431-7616450 Msa1091980:three_prime_UTR 30.0%
ATTAACATTAGACGAATGTC+AGG + chr7_3:7616553-7616572 None:intergenic 30.0%
!!! GCTATTGTCATTTTAGAAGA+AGG - chr7_3:7616599-7616618 Msa1091980:three_prime_UTR 30.0%
GAATGAATTTCTGTAGTCAT+AGG + chr7_3:7616767-7616786 None:intergenic 30.0%
TACATTGTATTTGATGCTCA+TGG - chr7_3:7616888-7616907 Msa1091980:CDS 30.0%
! TTCATTGTTGTTGATTACCT+TGG - chr7_3:7617079-7617098 Msa1091980:CDS 30.0%
! TCATTGTTGTTGATTACCTT+GGG - chr7_3:7617080-7617099 Msa1091980:CDS 30.0%
! ATTATAAGATTGGGTGTTAC+CGG - chr7_3:7617211-7617230 Msa1091980:intron 30.0%
!! CTCTAAAGTCAAATAATGCA+GGG + chr7_3:7617275-7617294 None:intergenic 30.0%
!! ACTCTAAAGTCAAATAATGC+AGG + chr7_3:7617276-7617295 None:intergenic 30.0%
TTAAAGATGCAAAAAGGTGA+TGG - chr7_3:7617368-7617387 Msa1091980:CDS 30.0%
AAATGGAGACTTTAGTACAT+TGG + chr7_3:7617686-7617705 None:intergenic 30.0%
! ATGTACTAAAGTCTCCATTT+TGG - chr7_3:7617686-7617705 Msa1091980:intron 30.0%
GAAAACTGACATAACCAAAA+TGG + chr7_3:7617703-7617722 None:intergenic 30.0%
!! CTCAGTTGATAATAAGACAT+TGG + chr7_3:7617762-7617781 None:intergenic 30.0%
TGCATGAATCATATTCCATG+TGG + chr7_3:7616449-7616468 None:intergenic 35.0%
!! TTCAAGGGTATTTGGTTTAG+AGG - chr7_3:7616641-7616660 Msa1091980:three_prime_UTR 35.0%
GATCCAAATCACAATGAGAT+TGG - chr7_3:7616684-7616703 Msa1091980:three_prime_UTR 35.0%
TCTCCAATCTCATTGTGATT+TGG + chr7_3:7616690-7616709 None:intergenic 35.0%
! AGAAGATGGGAGAATTTTGT+GGG + chr7_3:7616820-7616839 None:intergenic 35.0%
ATGGATTTCTGTCATGATGA+AGG - chr7_3:7617121-7617140 Msa1091980:CDS 35.0%
! GGTGTTTCTTGCATTTTCTA+TGG - chr7_3:7617142-7617161 Msa1091980:CDS 35.0%
TACACCAGTGGAAGTTAATA+TGG + chr7_3:7617534-7617553 None:intergenic 35.0%
! GGTTATGTCAGTTTTCCTTT+TGG - chr7_3:7617707-7617726 Msa1091980:intron 35.0%
! GTCTTATTATCAACTGAGAG+TGG - chr7_3:7617764-7617783 Msa1091980:five_prime_UTR 35.0%
TGCATGAATCATATTCCATG+TGG + chr7_3:7616449-7616468 None:intergenic 35.0%
!! TTCAAGGGTATTTGGTTTAG+AGG - chr7_3:7616641-7616660 Msa1091980:three_prime_UTR 35.0%
GATCCAAATCACAATGAGAT+TGG - chr7_3:7616684-7616703 Msa1091980:three_prime_UTR 35.0%
TCTCCAATCTCATTGTGATT+TGG + chr7_3:7616690-7616709 None:intergenic 35.0%
! AGAAGATGGGAGAATTTTGT+GGG + chr7_3:7616820-7616839 None:intergenic 35.0%
ATGGATTTCTGTCATGATGA+AGG - chr7_3:7617121-7617140 Msa1091980:CDS 35.0%
! GGTGTTTCTTGCATTTTCTA+TGG - chr7_3:7617142-7617161 Msa1091980:CDS 35.0%
TACACCAGTGGAAGTTAATA+TGG + chr7_3:7617534-7617553 None:intergenic 35.0%
! GGTTATGTCAGTTTTCCTTT+TGG - chr7_3:7617707-7617726 Msa1091980:intron 35.0%
! GTCTTATTATCAACTGAGAG+TGG - chr7_3:7617764-7617783 Msa1091980:five_prime_UTR 35.0%
! ACTTCCTGCATGCTTTTCAA+GGG - chr7_3:7616626-7616645 Msa1091980:three_prime_UTR 40.0%
! AATACCCTTGAAAAGCATGC+AGG + chr7_3:7616633-7616652 None:intergenic 40.0%
!!! GCATGCTTTTCAAGGGTATT+TGG - chr7_3:7616633-7616652 Msa1091980:three_prime_UTR 40.0%
TTCTGCTGAGGATTGAATTG+AGG + chr7_3:7616721-7616740 None:intergenic 40.0%
! GAAGATGGGAGAATTTTGTG+GGG + chr7_3:7616819-7616838 None:intergenic 40.0%
! CAGAAGATGGGAGAATTTTG+TGG + chr7_3:7616821-7616840 None:intergenic 40.0%
CACAAAATTCTCCCATCTTC+TGG - chr7_3:7616819-7616838 Msa1091980:three_prime_UTR 40.0%
TAACTCCTTCACCAGAAGAT+GGG + chr7_3:7616833-7616852 None:intergenic 40.0%
TTAACTCCTTCACCAGAAGA+TGG + chr7_3:7616834-7616853 None:intergenic 40.0%
TGATGTTACTACCAGAAGCT+TGG - chr7_3:7616861-7616880 Msa1091980:exon 40.0%
CAATGTACTTACCAAGCTTC+TGG + chr7_3:7616875-7616894 None:intergenic 40.0%
CATCATGACAGAAATCCATG+AGG + chr7_3:7617120-7617139 None:intergenic 40.0%
! CTTGCATTTTCTATGGTCAG+TGG - chr7_3:7617149-7617168 Msa1091980:CDS 40.0%
AACATCGTTGTTCGATTCAC+CGG + chr7_3:7617233-7617252 None:intergenic 40.0%
AGGTTGTGTTACAGAGTAGA+AGG - chr7_3:7617417-7617436 Msa1091980:CDS 40.0%
TCTCTCCAAATGTGCTAATG+TGG - chr7_3:7617503-7617522 Msa1091980:exon 40.0%
TGGACCATATTAACTTCCAC+TGG - chr7_3:7617527-7617546 Msa1091980:five_prime_UTR 40.0%
AACTGTCGAAATTACACCAG+TGG + chr7_3:7617546-7617565 None:intergenic 40.0%
! ACTTCCTGCATGCTTTTCAA+GGG - chr7_3:7616626-7616645 Msa1091980:three_prime_UTR 40.0%
! AATACCCTTGAAAAGCATGC+AGG + chr7_3:7616633-7616652 None:intergenic 40.0%
!!! GCATGCTTTTCAAGGGTATT+TGG - chr7_3:7616633-7616652 Msa1091980:three_prime_UTR 40.0%
TTCTGCTGAGGATTGAATTG+AGG + chr7_3:7616721-7616740 None:intergenic 40.0%
! GAAGATGGGAGAATTTTGTG+GGG + chr7_3:7616819-7616838 None:intergenic 40.0%
! CAGAAGATGGGAGAATTTTG+TGG + chr7_3:7616821-7616840 None:intergenic 40.0%
CACAAAATTCTCCCATCTTC+TGG - chr7_3:7616819-7616838 Msa1091980:three_prime_UTR 40.0%
TAACTCCTTCACCAGAAGAT+GGG + chr7_3:7616833-7616852 None:intergenic 40.0%
TTAACTCCTTCACCAGAAGA+TGG + chr7_3:7616834-7616853 None:intergenic 40.0%
TGATGTTACTACCAGAAGCT+TGG - chr7_3:7616861-7616880 Msa1091980:exon 40.0%
CAATGTACTTACCAAGCTTC+TGG + chr7_3:7616875-7616894 None:intergenic 40.0%
CATCATGACAGAAATCCATG+AGG + chr7_3:7617120-7617139 None:intergenic 40.0%
! CTTGCATTTTCTATGGTCAG+TGG - chr7_3:7617149-7617168 Msa1091980:CDS 40.0%
AACATCGTTGTTCGATTCAC+CGG + chr7_3:7617233-7617252 None:intergenic 40.0%
AGGTTGTGTTACAGAGTAGA+AGG - chr7_3:7617417-7617436 Msa1091980:CDS 40.0%
TCTCTCCAAATGTGCTAATG+TGG - chr7_3:7617503-7617522 Msa1091980:exon 40.0%
TGGACCATATTAACTTCCAC+TGG - chr7_3:7617527-7617546 Msa1091980:five_prime_UTR 40.0%
AACTGTCGAAATTACACCAG+TGG + chr7_3:7617546-7617565 None:intergenic 40.0%
CTCTTGACAGCAGCAACTAA+GGG + chr7_3:7616403-7616422 None:intergenic 45.0%
! GACTTCCTGCATGCTTTTCA+AGG - chr7_3:7616625-7616644 Msa1091980:three_prime_UTR 45.0%
TCCTCAGCAGAAATTGTTGC+TGG - chr7_3:7616729-7616748 Msa1091980:three_prime_UTR 45.0%
TCCAGCAACAATTTCTGCTG+AGG + chr7_3:7616733-7616752 None:intergenic 45.0%
ATTCTCCCATCTTCTGGTGA+AGG - chr7_3:7616825-7616844 Msa1091980:three_prime_UTR 45.0%
TCTGGTGAAGGAGTTAACAG+AGG - chr7_3:7616837-7616856 Msa1091980:three_prime_UTR 45.0%
TGGTTATTGTGTGCAGAAGC+TGG - chr7_3:7617009-7617028 Msa1091980:CDS 45.0%
GGTTATTGTGTGCAGAAGCT+GGG - chr7_3:7617010-7617029 Msa1091980:CDS 45.0%
TTGATTACCTTGGGTACACC+TGG - chr7_3:7617089-7617108 Msa1091980:CDS 45.0%
TCCAAATGTGCTAATGTGGC+TGG - chr7_3:7617507-7617526 Msa1091980:exon 45.0%
TCCAGCCACATTAGCACATT+TGG + chr7_3:7617511-7617530 None:intergenic 45.0%
TTGGTGTACGCATGTTTGCA+CGG + chr7_3:7617667-7617686 None:intergenic 45.0%
CACTCTCACTTGAAGCCAAA+AGG + chr7_3:7617725-7617744 None:intergenic 45.0%
AGACATTGGTAAGGAGATCC+TGG + chr7_3:7617748-7617767 None:intergenic 45.0%
CTCTTGACAGCAGCAACTAA+GGG + chr7_3:7616403-7616422 None:intergenic 45.0%
! GACTTCCTGCATGCTTTTCA+AGG - chr7_3:7616625-7616644 Msa1091980:three_prime_UTR 45.0%
TCCTCAGCAGAAATTGTTGC+TGG - chr7_3:7616729-7616748 Msa1091980:three_prime_UTR 45.0%
TCCAGCAACAATTTCTGCTG+AGG + chr7_3:7616733-7616752 None:intergenic 45.0%
ATTCTCCCATCTTCTGGTGA+AGG - chr7_3:7616825-7616844 Msa1091980:three_prime_UTR 45.0%
TCTGGTGAAGGAGTTAACAG+AGG - chr7_3:7616837-7616856 Msa1091980:three_prime_UTR 45.0%
TGGTTATTGTGTGCAGAAGC+TGG - chr7_3:7617009-7617028 Msa1091980:CDS 45.0%
GGTTATTGTGTGCAGAAGCT+GGG - chr7_3:7617010-7617029 Msa1091980:CDS 45.0%
TTGATTACCTTGGGTACACC+TGG - chr7_3:7617089-7617108 Msa1091980:CDS 45.0%
TCCAAATGTGCTAATGTGGC+TGG - chr7_3:7617507-7617526 Msa1091980:exon 45.0%
TCCAGCCACATTAGCACATT+TGG + chr7_3:7617511-7617530 None:intergenic 45.0%
TTGGTGTACGCATGTTTGCA+CGG + chr7_3:7617667-7617686 None:intergenic 45.0%
CACTCTCACTTGAAGCCAAA+AGG + chr7_3:7617725-7617744 None:intergenic 45.0%
AGACATTGGTAAGGAGATCC+TGG + chr7_3:7617748-7617767 None:intergenic 45.0%
GCTCTTGACAGCAGCAACTA+AGG + chr7_3:7616404-7616423 None:intergenic 50.0%
ATTGTGTGCAGAAGCTGGGA+TGG - chr7_3:7617014-7617033 Msa1091980:CDS 50.0%
ATGAATTCAGTGCGCTCTGC+AGG + chr7_3:7617064-7617083 None:intergenic 50.0%
TTACCTTGGGTACACCTGGA+AGG - chr7_3:7617093-7617112 Msa1091980:CDS 50.0%
GAAATCCATGAGGACCTTCC+AGG + chr7_3:7617110-7617129 None:intergenic 50.0%
! AGTGCACGCAGGTTGACTAA+AGG - chr7_3:7617184-7617203 Msa1091980:intron 50.0%
GCGCTTTGTGACCGTAATCA+TGG - chr7_3:7617626-7617645 Msa1091980:intron 50.0%
TGGTGTACGCATGTTTGCAC+GGG + chr7_3:7617666-7617685 None:intergenic 50.0%
GCTCTTGACAGCAGCAACTA+AGG + chr7_3:7616404-7616423 None:intergenic 50.0%
ATTGTGTGCAGAAGCTGGGA+TGG - chr7_3:7617014-7617033 Msa1091980:CDS 50.0%
ATGAATTCAGTGCGCTCTGC+AGG + chr7_3:7617064-7617083 None:intergenic 50.0%
TTACCTTGGGTACACCTGGA+AGG - chr7_3:7617093-7617112 Msa1091980:CDS 50.0%
GAAATCCATGAGGACCTTCC+AGG + chr7_3:7617110-7617129 None:intergenic 50.0%
! AGTGCACGCAGGTTGACTAA+AGG - chr7_3:7617184-7617203 Msa1091980:intron 50.0%
GCGCTTTGTGACCGTAATCA+TGG - chr7_3:7617626-7617645 Msa1091980:intron 50.0%
TGGTGTACGCATGTTTGCAC+GGG + chr7_3:7617666-7617685 None:intergenic 50.0%
TGCTGCTGTCAAGAGCGATG+TGG - chr7_3:7616408-7616427 Msa1091980:three_prime_UTR 55.0%
GTACACCTGGAAGGTCCTCA+TGG - chr7_3:7617102-7617121 Msa1091980:CDS 55.0%
CTATGGTCAGTGGCAAGCTC+TGG - chr7_3:7617159-7617178 Msa1091980:intron 55.0%
!! TGGCTTCAAGTGAGAGTGCC+AGG - chr7_3:7617727-7617746 Msa1091980:intron 55.0%
TGCTGCTGTCAAGAGCGATG+TGG - chr7_3:7616408-7616427 Msa1091980:three_prime_UTR 55.0%
GTACACCTGGAAGGTCCTCA+TGG - chr7_3:7617102-7617121 Msa1091980:CDS 55.0%
CTATGGTCAGTGGCAAGCTC+TGG - chr7_3:7617159-7617178 Msa1091980:intron 55.0%
!! TGGCTTCAAGTGAGAGTGCC+AGG - chr7_3:7617727-7617746 Msa1091980:intron 55.0%
GTGCAGAAGCTGGGATGGCT+TGG - chr7_3:7617019-7617038 Msa1091980:CDS 60.0%
GGACCTTCCAGGTGTACCCA+AGG + chr7_3:7617099-7617118 None:intergenic 60.0%
! AAGCTCTGGTGAGTGCACGC+AGG - chr7_3:7617173-7617192 Msa1091980:intron 60.0%
GTGCAGAAGCTGGGATGGCT+TGG - chr7_3:7617019-7617038 Msa1091980:CDS 60.0%
GGACCTTCCAGGTGTACCCA+AGG + chr7_3:7617099-7617118 None:intergenic 60.0%
! AAGCTCTGGTGAGTGCACGC+AGG - chr7_3:7617173-7617192 Msa1091980:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 7616395 7617803 7616395 ID=Msa1091980;Name=Msa1091980
chr7_3 mRNA 7616395 7617803 7616395 ID=Msa1091980-mRNA-1;Parent=Msa1091980;Name=Msa1091980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=143|1|1|1|0.5|0.33|3|485|164
chr7_3 exon 7616395 7617173 7616395 ID=Msa1091980-mRNA-1:exon:2400;Parent=Msa1091980-mRNA-1
chr7_3 exon 7617316 7617583 7617316 ID=Msa1091980-mRNA-1:exon:2399;Parent=Msa1091980-mRNA-1
chr7_3 exon 7617728 7617803 7617728 ID=Msa1091980-mRNA-1:exon:2398;Parent=Msa1091980-mRNA-1
chr7_3 five_prime_UTR 7617728 7617803 7617728 ID=Msa1091980-mRNA-1:five_prime_utr;Parent=Msa1091980-mRNA-1
chr7_3 five_prime_UTR 7617517 7617583 7617517 ID=Msa1091980-mRNA-1:five_prime_utr;Parent=Msa1091980-mRNA-1
chr7_3 CDS 7617316 7617516 7617316 ID=Msa1091980-mRNA-1:cds;Parent=Msa1091980-mRNA-1
chr7_3 CDS 7616880 7617173 7616880 ID=Msa1091980-mRNA-1:cds;Parent=Msa1091980-mRNA-1
chr7_3 three_prime_UTR 7616395 7616879 7616395 ID=Msa1091980-mRNA-1:three_prime_utr;Parent=Msa1091980-mRNA-1
Gene Sequence

>Msa1091980

ATGATCCAAATCACAATGAGATTGGAGAAGAGTTATCCTCAATTCAATCCTCAGCAGAAATTGTTGCTGGAAAATCAGAGAGCCTATGACTACAGAAATTCATTCATTCGATATGGATCAAATGCTCATTTTCTCCCCACAAAATTCTCCCATCTTCTGGTGAAGGAGTTAACAGAGGCTGATGTTACTACCAGAAGCTTGAAGCTGGGATGGCTTGGATTTTATCAAGCTGTTTTTCCTGCAGAGCGCACTGAATTCATTGTTGTTGATTACCTTGGGTACACCTGGAAGGTCCTCATGGATTTCTGTCATGATGAAGGTGTTTCTTGCATTTTCTATGGTCAGTGGCAAGCTCTGGTGAGTGCACGCAGGTTGACTAAAGGACAAATTATAAGATTGGGTGTTACCGGTGAATCGAACAACGATGTTAAGTATCTTTGCGCAAGAACCCTGCATTATTTGACTTTAGAGTGTATGGAGAATTTATATTCATAA
Protein sequence

>Msa1091980

MIQITMRLEKSYPQFNPQQKLLLENQRAYDYRNSFIRYGSNAHFLPTKFSHLLVKELTEADVTTRSLKLGWLGFYQAVFPAERTEFIVVDYLGYTWKVLMDFCHDEGVSCIFYGQWQALVSARRLTKGQIIRLGVTGESNNDVKYLCARTLHYLTLECMENLYS*