AlfalfaGEDB | Msa1091980

M. sativa cultivar zhongmu-4 / Msa1091980

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091980	KEH26597.1	51.799	139	67	0	9	147	139	277	1.24e-45	162

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091980	A0A072UAC5	51.799	139	67	0	9	147	139	277	5.94e-46	162

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0084440	Msa1091980	0.808973	2.379842e-50	-8.615850e-47
Msa0353620	Msa1091980	0.803096	4.103354e-49	-8.615850e-47
Msa0392140	Msa1091980	0.803965	2.710279e-49	-8.615850e-47
Msa0890270	Msa1091980	0.843370	1.460834e-58	-8.615850e-47
Msa0935130	Msa1091980	0.916398	1.869983e-85	-8.615850e-47
Msa1012290	Msa1091980	0.835911	1.273512e-56	-8.615850e-47
Msa1091500	Msa1091980	0.801178	1.017825e-48	-8.615850e-47
Msa1091980	Msa1358100	0.959836	6.983507e-118	-8.615850e-47

Showing 1 to 8 of 8 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091980	MtrunA17_Chr7g0232921	63.830	94	34	0	9	102	108	201	2.81e-41	137
Msa1091980	MtrunA17_Chr8g0366201	56.818	88	37	1	67	154	2	88	7.12e-31	107
Msa1091980	MtrunA17_Chr4g0023021	50.575	87	43	0	68	154	5	91	1.57e-29	104
Msa1091980	MtrunA17_Chr8g0365871	56.757	74	32	0	68	141	14	87	1.04e-28	102
Msa1091980	MtrunA17_Chr6g0473651	36.752	117	62	3	49	158	73	184	5.32e-17	77.0
Msa1091980	MtrunA17_Chr6g0473921	31.579	114	72	2	48	160	2	110	5.27e-15	68.2
Msa1091980	MtrunA17_Chr6g0473661	33.929	112	68	2	54	164	369	475	1.57e-13	67.4
Msa1091980	MtrunA17_Chr1g0156191	33.333	99	65	1	44	141	31	129	2.34e-11	58.2

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 68 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGACAAATTATAAGATT+GGG	0.468907	7_3:-7616974	Msa1091980:CDS
AAATCATGATTGACTGAAAA+AGG	0.286482	7_3:-7616779	Msa1091980:three_prime_UTR
AAATGGAGACTTTAGTACAT+TGG	0.596447	7_3:+7616493	None:intergenic
AACATCGTTGTTCGATTCAC+CGG	0.492245	7_3:+7616946	None:intergenic
AACTGTCGAAATTACACCAG+TGG	0.610725	7_3:+7616633	None:intergenic
AAGCTCTGGTGAGTGCACGC+AGG	0.677308	7_3:-7617003	Msa1091980:CDS
AAGGTTAACGATACATATCA+TGG	0.550752	7_3:+7616389	None:intergenic
AATACCCTTGAAAAGCATGC+AGG	0.608287	7_3:+7617546	None:intergenic
ACTCTAAAGTCAAATAATGC+AGG	0.487745	7_3:+7616903	None:intergenic
AGAAATTCATTCATTCGATA+TGG	0.286122	7_3:-7617401	Msa1091980:CDS

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTAACAAAGTACATACCACA+TGG	-	chr7_3:7616431-7616450	Msa1091980:three_prime_UTR	30.0%
ATTAACATTAGACGAATGTC+AGG	+	chr7_3:7616553-7616572	None:intergenic	30.0%
GAATGAATTTCTGTAGTCAT+AGG	+	chr7_3:7616767-7616786	None:intergenic	30.0%
TACATTGTATTTGATGCTCA+TGG	-	chr7_3:7616888-7616907	Msa1091980:CDS	30.0%
TTAAAGATGCAAAAAGGTGA+TGG	-	chr7_3:7617368-7617387	Msa1091980:CDS	30.0%
AAATGGAGACTTTAGTACAT+TGG	+	chr7_3:7617686-7617705	None:intergenic	30.0%
GAAAACTGACATAACCAAAA+TGG	+	chr7_3:7617703-7617722	None:intergenic	30.0%
TTAACAAAGTACATACCACA+TGG	-	chr7_3:7616431-7616450	Msa1091980:three_prime_UTR	30.0%
ATTAACATTAGACGAATGTC+AGG	+	chr7_3:7616553-7616572	None:intergenic	30.0%
GAATGAATTTCTGTAGTCAT+AGG	+	chr7_3:7616767-7616786	None:intergenic	30.0%

Showing 1 to 10 of 178 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	7616395	7617803	7616395	ID=Msa1091980;Name=Msa1091980
chr7_3	mRNA	7616395	7617803	7616395	ID=Msa1091980-mRNA-1;Parent=Msa1091980;Name=Msa1091980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=143\|1\|1\|1\|0.5\|0.33\|3\|485\|164
chr7_3	exon	7616395	7617173	7616395	ID=Msa1091980-mRNA-1:exon:2400;Parent=Msa1091980-mRNA-1
chr7_3	exon	7617316	7617583	7617316	ID=Msa1091980-mRNA-1:exon:2399;Parent=Msa1091980-mRNA-1
chr7_3	exon	7617728	7617803	7617728	ID=Msa1091980-mRNA-1:exon:2398;Parent=Msa1091980-mRNA-1
chr7_3	five_prime_UTR	7617728	7617803	7617728	ID=Msa1091980-mRNA-1:five_prime_utr;Parent=Msa1091980-mRNA-1
chr7_3	five_prime_UTR	7617517	7617583	7617517	ID=Msa1091980-mRNA-1:five_prime_utr;Parent=Msa1091980-mRNA-1
chr7_3	CDS	7617316	7617516	7617316	ID=Msa1091980-mRNA-1:cds;Parent=Msa1091980-mRNA-1
chr7_3	CDS	7616880	7617173	7616880	ID=Msa1091980-mRNA-1:cds;Parent=Msa1091980-mRNA-1
chr7_3	three_prime_UTR	7616395	7616879	7616395	ID=Msa1091980-mRNA-1:three_prime_utr;Parent=Msa1091980-mRNA-1

Gene Sequence

>Msa1091980

ATGATCCAAATCACAATGAGATTGGAGAAGAGTTATCCTCAATTCAATCCTCAGCAGAAATTGTTGCTGGAAAATCAGAGAGCCTATGACTACAGAAATTCATTCATTCGATATGGATCAAATGCTCATTTTCTCCCCACAAAATTCTCCCATCTTCTGGTGAAGGAGTTAACAGAGGCTGATGTTACTACCAGAAGCTTGAAGCTGGGATGGCTTGGATTTTATCAAGCTGTTTTTCCTGCAGAGCGCACTGAATTCATTGTTGTTGATTACCTTGGGTACACCTGGAAGGTCCTCATGGATTTCTGTCATGATGAAGGTGTTTCTTGCATTTTCTATGGTCAGTGGCAAGCTCTGGTGAGTGCACGCAGGTTGACTAAAGGACAAATTATAAGATTGGGTGTTACCGGTGAATCGAACAACGATGTTAAGTATCTTTGCGCAAGAACCCTGCATTATTTGACTTTAGAGTGTATGGAGAATTTATATTCATAA

Protein sequence

>Msa1091980

MIQITMRLEKSYPQFNPQQKLLLENQRAYDYRNSFIRYGSNAHFLPTKFSHLLVKELTEADVTTRSLKLGWLGFYQAVFPAERTEFIVVDYLGYTWKVLMDFCHDEGVSCIFYGQWQALVSARRLTKGQIIRLGVTGESNNDVKYLCARTLHYLTLECMENLYS*