AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0361270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0361270 MtrunA17_Chr3g0099401 92.612 582 13 2 1 552 1 582 0.0 1088
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0361270 AT4G26900.1 79.385 553 82 3 30 552 42 592 0.0 902

Find 139 sgRNAs with CRISPR-Local

Find 542 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAAGGACTCAGAAATTT+TGG 0.134153 3_1:-51453149 Msa0361270:CDS
TGCAAGCCGTTTAGTCTTTC+CGG 0.155933 3_1:-51455352 Msa0361270:CDS
ACCTGGACTTGAAACCTTTA+TGG 0.180165 3_1:+51449951 None:intergenic
TCTTCTACTTCCACTGATTC+TGG 0.203535 3_1:-51456301 Msa0361270:intron
CTTGCATTCAAAATGTCTTC+TGG 0.229616 3_1:+51455369 None:intergenic
TTGTCTATTGTAAGGTTAAT+GGG 0.234023 3_1:-51449018 Msa0361270:intron
GAGCAGATATCAAGAGTTTA+TGG 0.235737 3_1:-51450318 Msa0361270:CDS
GTCAGCTTTCTAAACATTAC+TGG 0.241338 3_1:-51450932 Msa0361270:CDS
ACAAAATTTCTGTGACTCTT+TGG 0.255628 3_1:-51447687 Msa0361270:three_prime_UTR
TTGTAAAAGCAAATGGTAAA+AGG 0.272140 3_1:+51447706 None:intergenic
TTTGTCTATTGTAAGGTTAA+TGG 0.272696 3_1:-51449019 Msa0361270:intron
AAGCTTCAAAACTTGCAAAA+AGG 0.275101 3_1:-51451512 Msa0361270:CDS
ATGGAGGTGTTAAGTAAAAC+TGG 0.296858 3_1:-51455306 Msa0361270:CDS
TATCATGTATATCTGATCTT+TGG 0.300402 3_1:-51447648 Msa0361270:three_prime_UTR
AGCAGCTGAAATGGGAGATT+TGG 0.309890 3_1:+51456501 None:intergenic
TGGTGATCTACCAATGTTGC+AGG 0.315191 3_1:-51450891 Msa0361270:intron
GTATCCTCCACCTGTGACTA+TGG 0.336952 3_1:-51452938 Msa0361270:CDS
GTCTGGAATTGCACATCATT+TGG 0.346057 3_1:+51449973 None:intergenic
GACGGAGGAGGAGGGAAGTA+GGG 0.347494 3_1:+51456404 None:intergenic
CAGGCATATTCTTCTCCATT+TGG 0.350924 3_1:+51449622 None:intergenic
TTGCATTCAAAATGTCTTCT+GGG 0.360568 3_1:+51455370 None:intergenic
TCAAATCGCCCAACGGTTCC+AGG 0.360875 3_1:+51453223 None:intergenic
CGTCGCTTTAGCAGCTGAAA+TGG 0.363297 3_1:+51456492 None:intergenic
GTTGTGACTTTGCTTGATTA+TGG 0.365393 3_1:-51456184 Msa0361270:CDS
TACTGTTGAGCAAGCTCAAC+TGG 0.368166 3_1:+51451061 None:intergenic
TACATCATACTGGTCTCCTT+TGG 0.368896 3_1:+51451330 None:intergenic
GCATCCGCTGCACTTGCTGC+TGG 0.371137 3_1:-51448470 Msa0361270:CDS
GGCTTAATACCTGGAACCGT+TGG 0.379736 3_1:-51453232 Msa0361270:CDS
TAAATGCTATAACATACAAC+AGG 0.380991 3_1:+51447794 None:intergenic
TGTTCTTTCACTGACTGAAT+AGG 0.383128 3_1:+51447901 None:intergenic
GCAAGCCGTTTAGTCTTTCC+GGG 0.383537 3_1:-51455351 Msa0361270:CDS
ATGAGCAGGTGAGACAATTT+CGG 0.384893 3_1:+51456469 None:intergenic
TTGTAGGCACTATTCTAGTT+TGG 0.388126 3_1:-51450540 Msa0361270:intron
TGACGGAGGAGGAGGGAAGT+AGG 0.389588 3_1:+51456403 None:intergenic
AATTCCACCACCAACTGTTA+AGG 0.389641 3_1:+51450729 None:intergenic
GCACGAATAGAGAAATTTGT+TGG 0.392785 3_1:+51456328 None:intergenic
GCCGAAGAATATTTAAGAAC+TGG 0.400430 3_1:-51450449 Msa0361270:CDS
ATCAAGAGTTTATGGGAATC+AGG 0.400872 3_1:-51450310 Msa0361270:intron
AGTCAGATGATAACAAAGAT+TGG 0.402053 3_1:-51452961 Msa0361270:CDS
TCCAGTTCTTAAATATTCTT+CGG 0.405621 3_1:+51450448 None:intergenic
GGGAATGTGAAGAAGGAGAG+TGG 0.406295 3_1:+51456373 None:intergenic
CGTTTAGTCTTTCCGGGTGT+TGG 0.410647 3_1:-51455345 Msa0361270:CDS
AGCAGATATCAAGAGTTTAT+GGG 0.415550 3_1:-51450317 Msa0361270:CDS
GGGCGATTTGATTCATCAAA+TGG 0.418537 3_1:-51453211 Msa0361270:CDS
GGGCGAGAAGGTCGGCCAAT+TGG 0.418619 3_1:-51448995 Msa0361270:CDS
ACTTTGCTTGATTATGGTGC+TGG 0.429957 3_1:-51456178 Msa0361270:CDS
AATATTTCAGGTCAAGGAAA+AGG 0.432664 3_1:-51448605 Msa0361270:intron
ATGTGAGAGCAAATGATAAC+GGG 0.433994 3_1:-51451366 Msa0361270:CDS
TGTGAATCAGTAAAAGGTCT+TGG 0.438970 3_1:-51453253 Msa0361270:intron
GACTTGAAACCTTTATGGTC+TGG 0.439140 3_1:+51449956 None:intergenic
AAAGAACATTTGTTGAATGA+AGG 0.442586 3_1:-51447886 Msa0361270:CDS
GCCAATTGGTGCTTATGAAC+TGG 0.444377 3_1:-51448981 Msa0361270:CDS
GCCAGTTCATAAGCACCAAT+TGG 0.446504 3_1:+51448980 None:intergenic
TGTGCAATTCCAGACCATAA+AGG 0.449736 3_1:-51449965 Msa0361270:CDS
GCTTAATACCTGGAACCGTT+GGG 0.450798 3_1:-51453231 Msa0361270:CDS
TTTGAATCTAGTGAAGAGAA+TGG 0.454583 3_1:-51454384 Msa0361270:CDS
ATTCCACCACCAACTGTTAA+GGG 0.455305 3_1:+51450730 None:intergenic
AACTTGCCTCCACTCTTCTC+TGG 0.455883 3_1:+51452860 None:intergenic
AGAGAGTGGGAATGTGAAGA+AGG 0.457079 3_1:+51456366 None:intergenic
ATTTCACAAACCTGCAACAT+TGG 0.459350 3_1:+51450881 None:intergenic
GGATTTCGCGACTTCCCTCT+TGG 0.461948 3_1:-51450911 Msa0361270:CDS
CACGAATAGAGAAATTTGTT+GGG 0.466951 3_1:+51456329 None:intergenic
GGGGAGTATGACGGTGTTAA+CGG 0.468690 3_1:+51456424 None:intergenic
ACGGAGGAGGAGGGAAGTAG+GGG 0.473445 3_1:+51456405 None:intergenic
GTCAGATGATAACAAAGATT+GGG 0.473806 3_1:-51452960 Msa0361270:CDS
CAACACCCGGAAAGACTAAA+CGG 0.475323 3_1:+51455346 None:intergenic
TGGAGCATTTGCACCTGCTA+TGG 0.478787 3_1:-51455325 Msa0361270:CDS
TTTCTGTGACTCTTTGGTAC+AGG 0.478905 3_1:-51447681 Msa0361270:three_prime_UTR
CCATTGTTTGTTGAATGAGC+AGG 0.482039 3_1:+51456455 None:intergenic
GTGATTGCAAGCAGTGGTGC+TGG 0.483155 3_1:-51448533 Msa0361270:CDS
GCACCACTGCTTGCAATCAC+AGG 0.490093 3_1:+51448536 None:intergenic
GCTCAACAGTACTATAAAGA+TGG 0.492059 3_1:-51451049 Msa0361270:CDS
ATTATGGTGCTGGCAATGTT+CGG 0.494044 3_1:-51456168 Msa0361270:CDS
ACCATAAAGGTTTCAAGTCC+AGG 0.495379 3_1:-51449952 Msa0361270:intron
TTACTTAACACCTCCATAGC+AGG 0.499119 3_1:+51455312 None:intergenic
ATGTTGGTTTCAGGTCCAAA+TGG 0.500156 3_1:-51449637 Msa0361270:intron
GTCGCTTTAGCAGCTGAAAT+GGG 0.501157 3_1:+51456493 None:intergenic
TAATAAGTAAAGTTCAGATT+CGG 0.508922 3_1:+51447854 None:intergenic
GCAAAAGCTGTTGAAGAACT+TGG 0.512212 3_1:-51448959 Msa0361270:CDS
ACTTTGTTCATATATTGAAA+AGG 0.512500 3_1:-51454448 Msa0361270:CDS
TGTCTATTGTAAGGTTAATG+GGG 0.517752 3_1:-51449017 Msa0361270:intron
TCTTGATATCTGCTCTAAGC+TGG 0.517936 3_1:+51450326 None:intergenic
ATTGTTTACGTAAACCCTAC+GGG 0.519871 3_1:+51449996 None:intergenic
TTTATAGCATCTATTAGAAG+AGG 0.520060 3_1:-51452908 Msa0361270:CDS
TGCATTCAAAATGTCTTCTG+GGG 0.522038 3_1:+51455371 None:intergenic
TTGTTAGTATTGATCCCCGT+AGG 0.524030 3_1:-51450011 Msa0361270:CDS
GTCTATTGTAAGGTTAATGG+GGG 0.526228 3_1:-51449016 Msa0361270:intron
GGGGCTGACAAGATATCCAT+TGG 0.534232 3_1:-51450491 Msa0361270:CDS
AAAGGTCTTGGCTTAATACC+TGG 0.537060 3_1:-51453241 Msa0361270:CDS
TTAGAGTACCACATATTGGA+TGG 0.542076 3_1:-51453186 Msa0361270:CDS
GATGTGAGAGCAAATGATAA+CGG 0.543465 3_1:-51451367 Msa0361270:CDS
TTTGTGCCCTTAACAGTTGG+TGG 0.544092 3_1:-51450736 Msa0361270:CDS
CTATAAAGATGGAGCTGATG+AGG 0.545442 3_1:-51451038 Msa0361270:intron
GATTGTTTACGTAAACCCTA+CGG 0.545532 3_1:+51449995 None:intergenic
GTGCCCTTAACAGTTGGTGG+TGG 0.545974 3_1:-51450733 Msa0361270:CDS
GGAATGTGAAGAAGGAGAGT+GGG 0.550346 3_1:+51456374 None:intergenic
AGGGAAGTAGGGGAGTATGA+CGG 0.550673 3_1:+51456415 None:intergenic
ATCACCATAGTCACAGGTGG+AGG 0.551749 3_1:+51452934 None:intergenic
TGCCTCCACTCTTCTCTGGA+TGG 0.552179 3_1:+51452864 None:intergenic
TTCACTTGAAGACAGAAGAC+TGG 0.555655 3_1:-51451543 Msa0361270:intron
CAAATGGAGAAGAATATGCC+TGG 0.568451 3_1:-51449621 Msa0361270:CDS
GCTGTTGAAGAACTTGGTGC+TGG 0.569160 3_1:-51448953 Msa0361270:CDS
TGTTAGTATTGATCCCCGTA+GGG 0.571287 3_1:-51450010 Msa0361270:CDS
AAATTTATCACCATAGTCAC+AGG 0.577451 3_1:+51452928 None:intergenic
AGAAAACAAACCAGAATCAG+TGG 0.580544 3_1:+51456291 None:intergenic
TTAAATTGCATCGATTGTGA+TGG 0.580609 3_1:-51448920 Msa0361270:intron
CCTGCTCATTCAACAAACAA+TGG 0.582081 3_1:-51456455 Msa0361270:exon
GGTGCAAATGCTCCAACACC+CGG 0.584926 3_1:+51455333 None:intergenic
AAAGCATTCCATCCAATATG+TGG 0.592934 3_1:+51453178 None:intergenic
ATAAACTGCATCACTTCCAA+TGG 0.593439 3_1:+51450475 None:intergenic
AGCATTTGCACCTGCTATGG+AGG 0.600749 3_1:-51455322 Msa0361270:CDS
TGAAGACAGAAGACTGGTGA+GGG 0.601339 3_1:-51451537 Msa0361270:intron
CACCACTGCTTGCAATCACA+GGG 0.603304 3_1:+51448537 None:intergenic
TTCCATCCAGAGAAGAGTGG+AGG 0.630317 3_1:-51452866 Msa0361270:CDS
TGGAGGTGTTAAGTAAAACT+GGG 0.630651 3_1:-51455305 Msa0361270:intron
CAGTTCCATCCAGAGAAGAG+TGG 0.632189 3_1:-51452869 Msa0361270:CDS
GGGGACCTTGTTGTAACCAA+AGG 0.634870 3_1:-51451346 Msa0361270:CDS
TGATGAATCAAATCGCCCAA+CGG 0.639501 3_1:+51453216 None:intergenic
TTTATCACCATAGTCACAGG+TGG 0.649989 3_1:+51452931 None:intergenic
AATGCCAGCAGCAAGTGCAG+CGG 0.655966 3_1:+51448466 None:intergenic
AAAGTGGAAACATACAGGCA+TGG 0.656500 3_1:+51453081 None:intergenic
AAATGCTATAACATACAACA+GGG 0.660990 3_1:+51447795 None:intergenic
ACTTACTGTACACTGATACC+AGG 0.662371 3_1:+51449603 None:intergenic
TTGAAGACAGAAGACTGGTG+AGG 0.665952 3_1:-51451538 Msa0361270:intron
GGAAACATACAGGCATGGCA+CGG 0.671224 3_1:+51453086 None:intergenic
GAATGCTTTACAAATCACAA+AGG 0.672945 3_1:-51453164 Msa0361270:CDS
GATGATATGATAATGACGCA+TGG 0.677416 3_1:-51447617 None:intergenic
ATCCCTGTGATTGCAAGCAG+TGG 0.678062 3_1:-51448539 Msa0361270:CDS
TCTATTGTAAGGTTAATGGG+GGG 0.682944 3_1:-51449015 Msa0361270:intron
GGTCTCCTTTGGTTACAACA+AGG 0.685716 3_1:+51451341 None:intergenic
AATGCACAAAATAGACATGG+TGG 0.688371 3_1:+51453113 None:intergenic
AGAAAATACAAAAGAGAACG+AGG 0.696026 3_1:-51451305 Msa0361270:intron
GCTCATTCAACAAACAATGG+AGG 0.697116 3_1:-51456452 Msa0361270:exon
AAGAATGCACAAAATAGACA+TGG 0.703456 3_1:+51453110 None:intergenic
ACATTGGTAGATCACCAAGA+GGG 0.715055 3_1:+51450897 None:intergenic
TTGTTTACGTAAACCCTACG+GGG 0.718532 3_1:+51449997 None:intergenic
GAGTATGACGGTGTTAACGG+CGG 0.720961 3_1:+51456427 None:intergenic
AACATTGGTAGATCACCAAG+AGG 0.723729 3_1:+51450896 None:intergenic
TGTGAGAGCAAATGATAACG+GGG 0.744026 3_1:-51451365 Msa0361270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTCATTAATTTTAATCA+AGG - chr3_1:51450802-51450821 Msa0361270:intron 10.0%
!! AATTATTCTTTCAAATTAAA+GGG + chr3_1:51452133-51452152 None:intergenic 10.0%
!! AAATTAGTTAAAATTAGAAA+GGG + chr3_1:51452679-51452698 None:intergenic 10.0%
!! TAAATTAGTTAAAATTAGAA+AGG + chr3_1:51452680-51452699 None:intergenic 10.0%
!! CATAAAATTTACAATATTTA+GGG - chr3_1:51452892-51452911 Msa0361270:CDS 10.0%
!! ATAAAATTTACAATATTTAG+GGG - chr3_1:51452893-51452912 Msa0361270:CDS 10.0%
!!! GAATTTTATCTAATATTTAT+TGG - chr3_1:51453333-51453352 Msa0361270:intron 10.0%
!!! AAACTATTTTTTTCTCAAAA+GGG + chr3_1:51447896-51447915 None:intergenic 15.0%
!!! AAAACTATTTTTTTCTCAAA+AGG + chr3_1:51447897-51447916 None:intergenic 15.0%
!! AATAAATTGAGAAGAAAAAA+AGG + chr3_1:51448884-51448903 None:intergenic 15.0%
!! TGAATGATAAAATATAACAT+TGG + chr3_1:51449628-51449647 None:intergenic 15.0%
!! AACAACAATAATAATAAAAG+AGG + chr3_1:51449802-51449821 None:intergenic 15.0%
!!! ATTTGAAAGATTTTTCATTT+AGG - chr3_1:51450028-51450047 Msa0361270:intron 15.0%
!!! TTTTTTTATAGTGAGAATAT+TGG - chr3_1:51450564-51450583 Msa0361270:intron 15.0%
!! AATCATTATATCACAATAAA+TGG + chr3_1:51450726-51450745 None:intergenic 15.0%
!! AAATAATAAAACTGAAGAAT+CGG - chr3_1:51451750-51451769 Msa0361270:intron 15.0%
!!! AGTTTTTCTATTTTACAAAT+AGG + chr3_1:51451794-51451813 None:intergenic 15.0%
!! CAATTATTCTTTCAAATTAA+AGG + chr3_1:51452134-51452153 None:intergenic 15.0%
!! TAATTTGAAAGAATAATTGA+AGG - chr3_1:51452135-51452154 Msa0361270:intron 15.0%
!!! CCTAAATATTGTAAATTTTA+TGG + chr3_1:51452894-51452913 None:intergenic 15.0%
!! CCATAAAATTTACAATATTT+AGG - chr3_1:51452891-51452910 Msa0361270:CDS 15.0%
!! TATAAATGGAAACTATTATT+TGG - chr3_1:51452941-51452960 Msa0361270:CDS 15.0%
!! AAAATTAAAAATCAGCATTT+GGG + chr3_1:51453296-51453315 None:intergenic 15.0%
!! AAAAATTAAAAATCAGCATT+TGG + chr3_1:51453297-51453316 None:intergenic 15.0%
!! ATTGAAAATAAATTGGTATA+TGG + chr3_1:51454104-51454123 None:intergenic 15.0%
!! ATGTATCTCATTAATTATTA+AGG + chr3_1:51454290-51454309 None:intergenic 15.0%
!! TAATAATTAATGAGATACAT+AGG - chr3_1:51454290-51454309 Msa0361270:intron 15.0%
!!! TTTACGATATATATTTTCAA+TGG + chr3_1:51454942-51454961 None:intergenic 15.0%
!! TGAAAATATATATCGTAAAT+TGG - chr3_1:51454943-51454962 Msa0361270:intron 15.0%
!!! AAGATTTAAAGTTGTTTAAA+TGG + chr3_1:51456049-51456068 None:intergenic 15.0%
!! TGATTATGAATATTCGAATA+AGG - chr3_1:51448205-51448224 Msa0361270:intron 20.0%
!!! TATACATAATTGGTAGTAAA+TGG - chr3_1:51448371-51448390 Msa0361270:intron 20.0%
!! AAAATTGATTATGACATGTT+TGG + chr3_1:51448652-51448671 None:intergenic 20.0%
!!! CATAATCAATTTTATGTATC+TGG - chr3_1:51448659-51448678 Msa0361270:intron 20.0%
!! TTATTAAAAACACTGTCTAT+TGG - chr3_1:51449131-51449150 Msa0361270:intron 20.0%
!! TGTAAATTACAACACATAAT+AGG + chr3_1:51449295-51449314 None:intergenic 20.0%
!! ACTTTGTTCATATATTGAAA+AGG - chr3_1:51449700-51449719 Msa0361270:intron 20.0%
!!! TTTTAGTATTATGGCATAAA+TGG - chr3_1:51449884-51449903 Msa0361270:intron 20.0%
!!! TAAATTTTATCCATTTGAAC+TGG + chr3_1:51450054-51450073 None:intergenic 20.0%
!! CAAAATAGTTTGATCTAAAT+TGG - chr3_1:51450595-51450614 Msa0361270:intron 20.0%
!! TAAAATAAGTAAAAAAAGCC+CGG - chr3_1:51450634-51450653 Msa0361270:intron 20.0%
!!! AAAATTTTAATATCAAAGCC+GGG + chr3_1:51450655-51450674 None:intergenic 20.0%
!!! CAAAATTTTAATATCAAAGC+CGG + chr3_1:51450656-51450675 None:intergenic 20.0%
!! AAAATACCAAAAAACTAGAT+TGG + chr3_1:51451326-51451345 None:intergenic 20.0%
!!! CTTATTTCTGTTTTTTCTTA+AGG - chr3_1:51451347-51451366 Msa0361270:CDS 20.0%
!! AAAACACATTCTACTAAAAT+TGG + chr3_1:51451428-51451447 None:intergenic 20.0%
!!! TTTTAGTAGAATGTGTTTTA+TGG - chr3_1:51451429-51451448 Msa0361270:intron 20.0%
!! TATTTCACATAGTAGATATT+TGG - chr3_1:51451974-51451993 Msa0361270:intron 20.0%
!!! AAATTCTACGTCTTTTATTT+GGG - chr3_1:51452324-51452343 Msa0361270:intron 20.0%
!!! ATTATGATCATTTTGACTTA+TGG - chr3_1:51452563-51452582 Msa0361270:intron 20.0%
!!! ATGATACTGTTTTAATTTTC+AGG - chr3_1:51453047-51453066 Msa0361270:intron 20.0%
!! TATCAATAGAAATAAGCAAT+AGG + chr3_1:51453739-51453758 None:intergenic 20.0%
!!! TACATTAATTTGAATGAACA+CGG + chr3_1:51453989-51454008 None:intergenic 20.0%
!! TACACAAAAATATTAAAAGC+AGG + chr3_1:51454242-51454261 None:intergenic 20.0%
!! TTTGTGTAAGTTATCTAAAT+TGG - chr3_1:51454254-51454273 Msa0361270:intron 20.0%
!! TCTAGGGAATAAAAATATTA+AGG - chr3_1:51454761-51454780 Msa0361270:intron 20.0%
!! AGCAATAATATTTCAAAATG+AGG + chr3_1:51454984-51455003 None:intergenic 20.0%
!! TATTATTGCTTAACAAGAAT+TGG - chr3_1:51454994-51455013 Msa0361270:intron 20.0%
!!! TTTATTTTCATTATATCCCT+CGG + chr3_1:51455062-51455081 None:intergenic 20.0%
!!! AAAATATTCATTGATGATGA+TGG + chr3_1:51455351-51455370 None:intergenic 20.0%
!!! ATTGTTGTTATCAATATTTC+AGG - chr3_1:51455531-51455550 Msa0361270:intron 20.0%
!! TTTATTAATTTCTTATTGCG+AGG - chr3_1:51455733-51455752 Msa0361270:intron 20.0%
!! TTATTAATTTCTTATTGCGA+GGG - chr3_1:51455734-51455753 Msa0361270:intron 20.0%
!!! ATTCCATTAATAAGCTTTAA+GGG - chr3_1:51455872-51455891 Msa0361270:intron 20.0%
!! TTAATTCAAAGATGTTATTG+AGG - chr3_1:51456191-51456210 Msa0361270:intron 20.0%
!! TAATAAGTAAAGTTCAGATT+CGG + chr3_1:51456297-51456316 None:intergenic 20.0%
!!! AGAAATTTTGTAAAAGCAAA+TGG + chr3_1:51456452-51456471 None:intergenic 20.0%
! GTAGTAAATGGTTAAATACA+GGG - chr3_1:51448383-51448402 Msa0361270:intron 25.0%
! TTGACAATTTACTAGAGTTT+GGG - chr3_1:51448412-51448431 Msa0361270:intron 25.0%
! TTGAGTGTAAAAATCATGTT+TGG - chr3_1:51448557-51448576 Msa0361270:CDS 25.0%
!! TATGTATCTGGAAACAATTT+TGG - chr3_1:51448671-51448690 Msa0361270:intron 25.0%
! TTGAAACAACTGTATTTGAT+AGG - chr3_1:51448748-51448767 Msa0361270:intron 25.0%
! TATGTACATTAAGAATGAGT+TGG - chr3_1:51449260-51449279 Msa0361270:intron 25.0%
! ACTGTACTAATTTCTAAGTA+TGG - chr3_1:51449318-51449337 Msa0361270:intron 25.0%
! ACTAATTTCTAAGTATGGTA+TGG - chr3_1:51449323-51449342 Msa0361270:intron 25.0%
!!! GAGACATTGTTTTATTTGAA+CGG + chr3_1:51449470-51449489 None:intergenic 25.0%
! ATTTATGCTGAATTTACTCT+AGG - chr3_1:51449508-51449527 Msa0361270:intron 25.0%
!! CGTTTATACTCTTAAGTTTT+AGG - chr3_1:51449588-51449607 Msa0361270:intron 25.0%
!!! CTCTCAACATTTTAGTATTA+TGG - chr3_1:51449875-51449894 Msa0361270:intron 25.0%
! TATAATCAGTTCATGAATCT+GGG - chr3_1:51450153-51450172 Msa0361270:intron 25.0%
! GATCAATCTGATTAAGAAAT+GGG - chr3_1:51450175-51450194 Msa0361270:intron 25.0%
!!! TAGGATTATTTTAAGCTAGT+TGG - chr3_1:51450218-51450237 Msa0361270:intron 25.0%
!!! TTATTTTGATAGAGTCCAAT+GGG - chr3_1:51450676-51450695 Msa0361270:intron 25.0%
! GAATTCTTTAAGTACATGTT+TGG - chr3_1:51450750-51450769 Msa0361270:CDS 25.0%
! ATTCACATTCTTTGTCTTTA+TGG - chr3_1:51451124-51451143 Msa0361270:intron 25.0%
! TTTATAGCATCTATTAGAAG+AGG - chr3_1:51451240-51451259 Msa0361270:intron 25.0%
!! ATATTCAGTGTTATCGATTA+CGG + chr3_1:51451490-51451509 None:intergenic 25.0%
! ATAAACTTCAATAACGATTG+CGG + chr3_1:51451535-51451554 None:intergenic 25.0%
!! TTTTACAAATAGGTCCTATT+TGG + chr3_1:51451784-51451803 None:intergenic 25.0%
! ACTATAGCTTACATATTGAA+AGG + chr3_1:51451867-51451886 None:intergenic 25.0%
! CTACTATGTGAAATAAATAG+TGG + chr3_1:51451969-51451988 None:intergenic 25.0%
! AATAATTGAAGGATGATCTT+AGG - chr3_1:51452146-51452165 Msa0361270:intron 25.0%
!!! TCTTAGGTTCTAAATTAACT+TGG - chr3_1:51452162-51452181 Msa0361270:intron 25.0%
! GAAAAAAAGTGAAATGAAAG+CGG - chr3_1:51452184-51452203 Msa0361270:intron 25.0%
! AAAAAAAGTGAAATGAAAGC+GGG - chr3_1:51452185-51452204 Msa0361270:intron 25.0%
!! CAAATTCTACGTCTTTTATT+TGG - chr3_1:51452323-51452342 Msa0361270:intron 25.0%
! TTCATAAGATGTTCATAGAA+AGG + chr3_1:51452535-51452554 None:intergenic 25.0%
! AAATAACGAAAACATTGAAG+AGG + chr3_1:51452716-51452735 None:intergenic 25.0%
!! TATTTTCTCTTACATCATAC+TGG + chr3_1:51452831-51452850 None:intergenic 25.0%
! AGCATATGTCAAGATATAAA+TGG - chr3_1:51452927-51452946 Msa0361270:CDS 25.0%
! ATGGAAACTATTATTTGGTT+TGG - chr3_1:51452946-51452965 Msa0361270:CDS 25.0%
!!! ACTGTTTTAATTTTCAGGTT+AGG - chr3_1:51453052-51453071 Msa0361270:intron 25.0%
! TAATAACACCTTTGACAATT+TGG - chr3_1:51453133-51453152 Msa0361270:CDS 25.0%
! ACATCTCTAATTTGGTATAA+AGG + chr3_1:51453487-51453506 None:intergenic 25.0%
! TAAAAGCGGACAATTTAAAT+TGG + chr3_1:51453528-51453547 None:intergenic 25.0%
! TCCAGTTCTTAAATATTCTT+CGG + chr3_1:51453703-51453722 None:intergenic 25.0%
! AATATTTAAGAACTGGAGTA+TGG - chr3_1:51453706-51453725 Msa0361270:intron 25.0%
! TGTCATATTAGGTAAAAACA+GGG - chr3_1:51453795-51453814 Msa0361270:intron 25.0%
! ACTTGTATTTACATGGATAA+GGG + chr3_1:51453905-51453924 None:intergenic 25.0%
! TACTTGTATTTACATGGATA+AGG + chr3_1:51453906-51453925 None:intergenic 25.0%
! ATCAAGTACTTGTATTTACA+TGG + chr3_1:51453912-51453931 None:intergenic 25.0%
! TCATTACATCAAGTATCAAA+TGG + chr3_1:51454073-51454092 None:intergenic 25.0%
! CCTGCAAATTGAAAATAAAT+TGG + chr3_1:51454111-51454130 None:intergenic 25.0%
!!! CCAATTTATTTTCAATTTGC+AGG - chr3_1:51454108-51454127 Msa0361270:intron 25.0%
! ATATTAAAAGCAGGAAGAAA+TGG + chr3_1:51454233-51454252 None:intergenic 25.0%
! AGAGAATATAATACATCCAT+AGG + chr3_1:51454396-51454415 None:intergenic 25.0%
! ACTCAAAAACAACTTTATGT+TGG - chr3_1:51454495-51454514 Msa0361270:intron 25.0%
! CTAGCAATGTCTATTTATAA+CGG + chr3_1:51454656-51454675 None:intergenic 25.0%
! TTATAAATAGACATTGCTAG+AGG - chr3_1:51454656-51454675 Msa0361270:intron 25.0%
! TATAAATAGACATTGCTAGA+GGG - chr3_1:51454657-51454676 Msa0361270:intron 25.0%
!!! GAAACCTCTATTTTTTACAT+CGG + chr3_1:51454791-51454810 None:intergenic 25.0%
!! TACTTCTTTTGTCTATTGTA+AGG - chr3_1:51455122-51455141 Msa0361270:intron 25.0%
! TTTGTCTATTGTAAGGTTAA+TGG - chr3_1:51455129-51455148 Msa0361270:intron 25.0%
! TTGTCTATTGTAAGGTTAAT+GGG - chr3_1:51455130-51455149 Msa0361270:intron 25.0%
! CTTATCAAAACAGTAAAATC+AGG + chr3_1:51455275-51455294 None:intergenic 25.0%
!!! CTGATTTTACTGTTTTGATA+AGG - chr3_1:51455273-51455292 Msa0361270:intron 25.0%
! AGAAAGAATGACAAGTATAA+AGG + chr3_1:51455496-51455515 None:intergenic 25.0%
!!! ATTTGTTTTAGTGAACACAT+CGG + chr3_1:51455658-51455677 None:intergenic 25.0%
! TATTAATTTCTTATTGCGAG+GGG - chr3_1:51455735-51455754 Msa0361270:intron 25.0%
! TTAAATTGACACCAAAAAGA+AGG + chr3_1:51455835-51455854 None:intergenic 25.0%
! CATTCCATTAATAAGCTTTA+AGG - chr3_1:51455871-51455890 Msa0361270:intron 25.0%
! TTTCCCTTAAAGCTTATTAA+TGG + chr3_1:51455878-51455897 None:intergenic 25.0%
! TATATCTTGACCATCTATAT+AGG - chr3_1:51456109-51456128 Msa0361270:intron 25.0%
! ATATCTTGACCATCTATATA+GGG - chr3_1:51456110-51456129 Msa0361270:intron 25.0%
!! AAAGAACATTTGTTGAATGA+AGG - chr3_1:51456262-51456281 Msa0361270:intron 25.0%
! AAATGCTATAACATACAACA+GGG + chr3_1:51456356-51456375 None:intergenic 25.0%
! TAAATGCTATAACATACAAC+AGG + chr3_1:51456357-51456376 None:intergenic 25.0%
! TTGTAAAAGCAAATGGTAAA+AGG + chr3_1:51456445-51456464 None:intergenic 25.0%
! TATCATGTATATCTGATCTT+TGG - chr3_1:51456500-51456519 Msa0361270:five_prime_UTR 25.0%
! CACGAATAGAGAAATTTGTT+GGG + chr3_1:51447822-51447841 None:intergenic 30.0%
! CATCTTTGATTTCAAATCCA+AGG + chr3_1:51448029-51448048 None:intergenic 30.0%
TGTAAGCTTTCTACTTCATT+TGG - chr3_1:51448047-51448066 Msa0361270:intron 30.0%
AGTAAACCACTAAATTAGTC+CGG - chr3_1:51448161-51448180 Msa0361270:intron 30.0%
AGGTCTTTACTATGTCAAAT+TGG - chr3_1:51448225-51448244 Msa0361270:intron 30.0%
! GTAAACCACTGAATTAGTTT+CGG - chr3_1:51448267-51448286 Msa0361270:intron 30.0%
! CTAAATTGATTGATAGCAAG+TGG - chr3_1:51448338-51448357 Msa0361270:intron 30.0%
GGTAGTAAATGGTTAAATAC+AGG - chr3_1:51448382-51448401 Msa0361270:intron 30.0%
CTTGACAATTTACTAGAGTT+TGG - chr3_1:51448411-51448430 Msa0361270:intron 30.0%
TGACAATTTACTAGAGTTTG+GGG - chr3_1:51448413-51448432 Msa0361270:intron 30.0%
AAATTAGTCCTTAACGTTGT+AGG + chr3_1:51448483-51448502 None:intergenic 30.0%
! TTGTCCAACTAACTTTTAGT+TGG + chr3_1:51448532-51448551 None:intergenic 30.0%
TACTATGAAACCAAACGAAT+GGG - chr3_1:51448699-51448718 Msa0361270:intron 30.0%
TAAAAAACAACCCATTCGTT+TGG + chr3_1:51448712-51448731 None:intergenic 30.0%
TTGCATTCAAAATGTCTTCT+GGG + chr3_1:51448781-51448800 None:intergenic 30.0%
TGTGACTCTCTATTATATCA+GGG + chr3_1:51449014-51449033 None:intergenic 30.0%
GTCTATTGGATTAAAGTAGT+AGG - chr3_1:51449145-51449164 Msa0361270:intron 30.0%
TTAAAGTAGTAGGTTTGTGA+AGG - chr3_1:51449155-51449174 Msa0361270:intron 30.0%
AGTGAAGATTAACATTTGTG+TGG + chr3_1:51449215-51449234 None:intergenic 30.0%
!! ATGGTATGGTGTTGAATTTT+TGG - chr3_1:51449337-51449356 Msa0361270:intron 30.0%
!! TGGTATGGTGTTGAATTTTT+GGG - chr3_1:51449338-51449357 Msa0361270:intron 30.0%
!! TTGAATTTTTGGGGATAATC+AGG - chr3_1:51449348-51449367 Msa0361270:intron 30.0%
! AATTTACTCTAGGCATTGTT+AGG - chr3_1:51449518-51449537 Msa0361270:intron 30.0%
CAAGACAAATGCCTAAAAAT+GGG + chr3_1:51449730-51449749 None:intergenic 30.0%
TTTGAATCTAGTGAAGAGAA+TGG - chr3_1:51449764-51449783 Msa0361270:intron 30.0%
TAATAAAAGAGGAACTGACT+TGG + chr3_1:51449791-51449810 None:intergenic 30.0%
AATGTTGAGAGAGTAGTTAA+AGG + chr3_1:51449866-51449885 None:intergenic 30.0%
CAGATTCATGAACTGATTAT+AGG + chr3_1:51450154-51450173 None:intergenic 30.0%
CTATAATCAGTTCATGAATC+TGG - chr3_1:51450152-51450171 Msa0361270:intron 30.0%
GGATCAATCTGATTAAGAAA+TGG - chr3_1:51450174-51450193 Msa0361270:intron 30.0%
! AACTTCGATTTGAAGACAAT+TGG + chr3_1:51450280-51450299 None:intergenic 30.0%
CGAAGTTAGTGAAATTATAG+CGG - chr3_1:51450293-51450312 Msa0361270:intron 30.0%
ATGGTCCAGTAATGAATATT+GGG - chr3_1:51450347-51450366 Msa0361270:intron 30.0%
ACTTTCCCAATATTCATTAC+TGG + chr3_1:51450355-51450374 None:intergenic 30.0%
GTTTACTCATATGAGTAATG+AGG - chr3_1:51450395-51450414 Msa0361270:intron 30.0%
AGTTTGATCTAAATTGGTAG+AGG - chr3_1:51450601-51450620 Msa0361270:intron 30.0%
!!! GTTATTTTGATAGAGTCCAA+TGG - chr3_1:51450675-51450694 Msa0361270:intron 30.0%
!!! TATTTTGATAGAGTCCAATG+GGG - chr3_1:51450677-51450696 Msa0361270:intron 30.0%
CTTTAAGTACATGTTTGGTT+TGG - chr3_1:51450755-51450774 Msa0361270:CDS 30.0%
!! CTCTTAACTGAAGTATTGAA+TGG - chr3_1:51450861-51450880 Msa0361270:intron 30.0%
TGTACTTGTGAATCAGTAAA+AGG - chr3_1:51450889-51450908 Msa0361270:intron 30.0%
GAATGCTTTACAAATCACAA+AGG - chr3_1:51450984-51451003 Msa0361270:intron 30.0%
! TCAGAAATTTTGGATGATGT+TGG - chr3_1:51451009-51451028 Msa0361270:intron 30.0%
AAGAATGCACAAAATAGACA+TGG + chr3_1:51451041-51451060 None:intergenic 30.0%
AGTCAGATGATAACAAAGAT+TGG - chr3_1:51451187-51451206 Msa0361270:intron 30.0%
GTCAGATGATAACAAAGATT+GGG - chr3_1:51451188-51451207 Msa0361270:intron 30.0%
AAATTTATCACCATAGTCAC+AGG + chr3_1:51451223-51451242 None:intergenic 30.0%
!!! TCCTAACCAATCTAGTTTTT+TGG - chr3_1:51451317-51451336 Msa0361270:CDS 30.0%
! ACCAAAAAACTAGATTGGTT+AGG + chr3_1:51451321-51451340 None:intergenic 30.0%
! TAGTAGAATGTGTTTTATGG+CGG - chr3_1:51451432-51451451 Msa0361270:intron 30.0%
! GGATCAAAATGGCATATTTT+TGG - chr3_1:51451453-51451472 Msa0361270:intron 30.0%
TAATCAGTGTTGTCTAATAG+CGG - chr3_1:51451570-51451589 Msa0361270:intron 30.0%
! AATCGGATTGTTTTCCAAAT+AGG - chr3_1:51451767-51451786 Msa0361270:intron 30.0%
CTATGTGAAATAAATAGTGG+AGG + chr3_1:51451966-51451985 None:intergenic 30.0%
TTGTTTACACTGCTTGTAAT+CGG - chr3_1:51452011-51452030 Msa0361270:intron 30.0%
! TTTGAGTTTCCAGTCTTTAT+TGG - chr3_1:51452268-51452287 Msa0361270:intron 30.0%
GAAATGAAACTTTCAGATGT+TGG - chr3_1:51452448-51452467 Msa0361270:intron 30.0%
CTTCAAGTGAATATCACAAA+TGG + chr3_1:51452596-51452615 None:intergenic 30.0%
AAGCTTCAAAACTTGCAAAA+AGG - chr3_1:51452636-51452655 Msa0361270:intron 30.0%
AGCTTCAAAACTTGCAAAAA+GGG - chr3_1:51452637-51452656 Msa0361270:intron 30.0%
!! TAACAAAGCATTGTCTATGA+AGG - chr3_1:51452744-51452763 Msa0361270:intron 30.0%
AGAAAATACAAAAGAGAACG+AGG - chr3_1:51452843-51452862 Msa0361270:intron 30.0%
!!! AATTTTCAGGTTAGGAATCT+TGG - chr3_1:51453060-51453079 Msa0361270:intron 30.0%
GAAAACAACCAAATTGTCAA+AGG + chr3_1:51453144-51453163 None:intergenic 30.0%
! TCGAGATTTTACAGATTCTA+AGG - chr3_1:51453441-51453460 Msa0361270:intron 30.0%
! CGAGATTTTACAGATTCTAA+GGG - chr3_1:51453442-51453461 Msa0361270:intron 30.0%
!! ATTTTACAGATTCTAAGGGA+AGG - chr3_1:51453446-51453465 Msa0361270:intron 30.0%
GTAGTGAAACATCTCTAATT+TGG + chr3_1:51453495-51453514 None:intergenic 30.0%
CAAACATACAACAGTAAAAG+CGG + chr3_1:51453542-51453561 None:intergenic 30.0%
CCTACAATTTAGGTATTTCA+TGG + chr3_1:51453595-51453614 None:intergenic 30.0%
CCATGAAATACCTAAATTGT+AGG - chr3_1:51453592-51453611 Msa0361270:intron 30.0%
TAGAATAGTGCCTACAATTT+AGG + chr3_1:51453605-51453624 None:intergenic 30.0%
! AAGTAGCTGCAGAATATTTT+AGG - chr3_1:51453631-51453650 Msa0361270:intron 30.0%
CTGTCATATTAGGTAAAAAC+AGG - chr3_1:51453794-51453813 Msa0361270:intron 30.0%
AGCAGATATCAAGAGTTTAT+GGG - chr3_1:51453831-51453850 Msa0361270:intron 30.0%
TTGTATTTACATGGATAAGG+GGG + chr3_1:51453903-51453922 None:intergenic 30.0%
CTTGTATTTACATGGATAAG+GGG + chr3_1:51453904-51453923 None:intergenic 30.0%
TGAACACGGTAATAATGAAA+AGG + chr3_1:51453975-51453994 None:intergenic 30.0%
!! AACAACTTTATGTTGGTTTC+AGG - chr3_1:51454502-51454521 Msa0361270:intron 30.0%
ATAAATAGACATTGCTAGAG+GGG - chr3_1:51454658-51454677 Msa0361270:intron 30.0%
! TTCAGAAGTAGTAGTTTTCT+AGG - chr3_1:51454744-51454763 Msa0361270:intron 30.0%
! TCAGAAGTAGTAGTTTTCTA+GGG - chr3_1:51454745-51454764 Msa0361270:intron 30.0%
ATGTCCGATGTAAAAAATAG+AGG - chr3_1:51454784-51454803 Msa0361270:intron 30.0%
! ATCGTAAATTGGTTTAGATG+TGG - chr3_1:51454954-51454973 Msa0361270:intron 30.0%
ATCGCGAGATTATAATTCAT+GGG - chr3_1:51455020-51455039 Msa0361270:intron 30.0%
TATTGTGAGACAAGAATTTC+AGG + chr3_1:51455104-51455123 None:intergenic 30.0%
TGTCTATTGTAAGGTTAATG+GGG - chr3_1:51455131-51455150 Msa0361270:intron 30.0%
!! TTAAATTGCATCGATTGTGA+TGG - chr3_1:51455228-51455247 Msa0361270:intron 30.0%
AGCTGTTAAATTTCACTGTT+TGG - chr3_1:51455303-51455322 Msa0361270:intron 30.0%
! GTTATCAATATTTCAGGTCA+AGG - chr3_1:51455537-51455556 Msa0361270:intron 30.0%
! AATATTTCAGGTCAAGGAAA+AGG - chr3_1:51455543-51455562 Msa0361270:intron 30.0%
TTGAAGGATGAAGAGTAATA+TGG + chr3_1:51455799-51455818 None:intergenic 30.0%
!! TTTGTTGCTTACCTTCTTTT+TGG - chr3_1:51455821-51455840 Msa0361270:intron 30.0%
AAGTTGTTTAAATGGTCACA+TGG + chr3_1:51456041-51456060 None:intergenic 30.0%
TAACTTACACTCATTCAGAA+AGG - chr3_1:51456150-51456169 Msa0361270:intron 30.0%
! TTGAACTTTTCATAAACTGC+AGG - chr3_1:51456222-51456241 Msa0361270:intron 30.0%
ACAAAATTTCTGTGACTCTT+TGG - chr3_1:51456461-51456480 Msa0361270:five_prime_UTR 30.0%
GCACGAATAGAGAAATTTGT+TGG + chr3_1:51447823-51447842 None:intergenic 35.0%
AGAAAACAAACCAGAATCAG+TGG + chr3_1:51447860-51447879 None:intergenic 35.0%
GTTGTGACTTTGCTTGATTA+TGG - chr3_1:51447964-51447983 Msa0361270:intron 35.0%
AGGAATGCTATCAAATTCCT+TGG - chr3_1:51448009-51448028 Msa0361270:intron 35.0%
!! TTCATTTGGTAGTGTGTGTT+TGG - chr3_1:51448061-51448080 Msa0361270:intron 35.0%
AAGACCTATTTGAAAACGAC+CGG + chr3_1:51448183-51448202 None:intergenic 35.0%
CTCATATTACTCCTTCTTAG+AGG - chr3_1:51448305-51448324 Msa0361270:intron 35.0%
CAACGTTAAGGACTAATTTG+CGG - chr3_1:51448484-51448503 Msa0361270:CDS 35.0%
GACACCAACTAAAAGTTAGT+TGG - chr3_1:51448525-51448544 Msa0361270:CDS 35.0%
AGTCCTAGATTCAATTCTAG+AGG - chr3_1:51448601-51448620 Msa0361270:intron 35.0%
!! TTGCCTCTAGAATTGAATCT+AGG + chr3_1:51448607-51448626 None:intergenic 35.0%
! CATTCGTTTGGTTTCATAGT+AGG + chr3_1:51448700-51448719 None:intergenic 35.0%
CTACTATGAAACCAAACGAA+TGG - chr3_1:51448698-51448717 Msa0361270:intron 35.0%
TGCATTCAAAATGTCTTCTG+GGG + chr3_1:51448780-51448799 None:intergenic 35.0%
CTTGCATTCAAAATGTCTTC+TGG + chr3_1:51448782-51448801 None:intergenic 35.0%
!! ATGGAGGTGTTAAGTAAAAC+TGG - chr3_1:51448842-51448861 Msa0361270:intron 35.0%
!! TGGAGGTGTTAAGTAAAACT+GGG - chr3_1:51448843-51448862 Msa0361270:intron 35.0%
TAGTTGTAATATTACGCCTG+TGG - chr3_1:51448922-51448941 Msa0361270:CDS 35.0%
AGTTGTAATATTACGCCTGT+GGG - chr3_1:51448923-51448942 Msa0361270:CDS 35.0%
CTGTGACTCTCTATTATATC+AGG + chr3_1:51449015-51449034 None:intergenic 35.0%
AGGTTTGTGAAGGAAAACAA+AGG - chr3_1:51449165-51449184 Msa0361270:intron 35.0%
ACAACACATAATAGGAGTCT+TGG + chr3_1:51449287-51449306 None:intergenic 35.0%
!! GGTATGGTGTTGAATTTTTG+GGG - chr3_1:51449339-51449358 Msa0361270:intron 35.0%
ATCAGGTTAGAAAGAGTTAG+TGG - chr3_1:51449365-51449384 Msa0361270:intron 35.0%
CCAAGACAAATGCCTAAAAA+TGG + chr3_1:51449731-51449750 None:intergenic 35.0%
!! CCATTTTTAGGCATTTGTCT+TGG - chr3_1:51449728-51449747 Msa0361270:intron 35.0%
! TGTGTAATTTCACATCGACT+TGG + chr3_1:51449925-51449944 None:intergenic 35.0%
TTCATTTAGGCCAGTTCAAA+TGG - chr3_1:51450041-51450060 Msa0361270:intron 35.0%
TAAAAAATCCTATCGCTCCA+AGG + chr3_1:51450100-51450119 None:intergenic 35.0%
!!! TGGAGCGATAGGATTTTTTA+TGG - chr3_1:51450100-51450119 Msa0361270:intron 35.0%
!!! GGAGCGATAGGATTTTTTAT+GGG - chr3_1:51450101-51450120 Msa0361270:intron 35.0%
!!! GAGCGATAGGATTTTTTATG+GGG - chr3_1:51450102-51450121 Msa0361270:intron 35.0%
TTTAAGCTAGTTGGATCTGA+TGG - chr3_1:51450227-51450246 Msa0361270:intron 35.0%
!! AATTATAGCGGACAACTATG+TGG - chr3_1:51450305-51450324 Msa0361270:intron 35.0%
GATGGTCCAGTAATGAATAT+TGG - chr3_1:51450346-51450365 Msa0361270:intron 35.0%
TCAACCATCTTCTCATCAAT+TGG + chr3_1:51450466-51450485 None:intergenic 35.0%
CTCCATAGAGGAAAATCAAA+TGG - chr3_1:51450518-51450537 Msa0361270:CDS 35.0%
!! CTCCATTTGATTTTCCTCTA+TGG + chr3_1:51450523-51450542 None:intergenic 35.0%
CAAGAAATAATCTACCCCAT+TGG + chr3_1:51450694-51450713 None:intergenic 35.0%
TGTGAATCAGTAAAAGGTCT+TGG - chr3_1:51450895-51450914 Msa0361270:CDS 35.0%
!!! GGTTTTAGAGTACCACATAT+TGG - chr3_1:51450958-51450977 Msa0361270:intron 35.0%
! TTAGAGTACCACATATTGGA+TGG - chr3_1:51450962-51450981 Msa0361270:intron 35.0%
! AAAGCATTCCATCCAATATG+TGG + chr3_1:51450973-51450992 None:intergenic 35.0%
! CACAAAGGACTCAGAAATTT+TGG - chr3_1:51450999-51451018 Msa0361270:intron 35.0%
AATGCACAAAATAGACATGG+TGG + chr3_1:51451038-51451057 None:intergenic 35.0%
AGAGAAAAGTGGAAACATAC+AGG + chr3_1:51451075-51451094 None:intergenic 35.0%
! TGGAGATTTCTAGAGAAAAG+TGG + chr3_1:51451086-51451105 None:intergenic 35.0%
TAGAAATCTCCATGTTACTC+TGG - chr3_1:51451094-51451113 Msa0361270:intron 35.0%
CATTCTACTAAAATTGGCCA+TGG + chr3_1:51451422-51451441 None:intergenic 35.0%
!!! TGTTTTATGGCGGATCAAAA+TGG - chr3_1:51451442-51451461 Msa0361270:intron 35.0%
ACTATCCTAGTTTCGCTATT+AGG - chr3_1:51451654-51451673 Msa0361270:intron 35.0%
CTATCCTAGTTTCGCTATTA+GGG - chr3_1:51451655-51451674 Msa0361270:intron 35.0%
! TAGCAGAAGTAGAGAGTTTT+AGG - chr3_1:51451719-51451738 Msa0361270:intron 35.0%
! AGCAGAAGTAGAGAGTTTTA+GGG - chr3_1:51451720-51451739 Msa0361270:intron 35.0%
TGCTGCATAAAGATAAAGCA+GGG + chr3_1:51451901-51451920 None:intergenic 35.0%
ATGCTGCATAAAGATAAAGC+AGG + chr3_1:51451902-51451921 None:intergenic 35.0%
GAAATGAAAGCGGGAAAAAT+AGG - chr3_1:51452194-51452213 Msa0361270:intron 35.0%
CTTGTATCCAAATTCAAGTG+TGG - chr3_1:51452492-51452511 Msa0361270:intron 35.0%
GATGTGAGAGCAAATGATAA+CGG - chr3_1:51452781-51452800 Msa0361270:intron 35.0%
ATGTGAGAGCAAATGATAAC+GGG - chr3_1:51452782-51452801 Msa0361270:intron 35.0%
ATTGAAGGTTGAACGTTAGT+TGG + chr3_1:51453192-51453211 None:intergenic 35.0%
TAATGTTTAGAAAGCTGACC+TGG + chr3_1:51453215-51453234 None:intergenic 35.0%
GTCAGCTTTCTAAACATTAC+TGG - chr3_1:51453216-51453235 Msa0361270:CDS 35.0%
ATTTCACAAACCTGCAACAT+TGG + chr3_1:51453270-51453289 None:intergenic 35.0%
TTGGAGTTTCATTCTCACTA+TGG - chr3_1:51453352-51453371 Msa0361270:intron 35.0%
TTCTCACTATGGTTCTTCAT+AGG - chr3_1:51453363-51453382 Msa0361270:intron 35.0%
! TTGTAGGCACTATTCTAGTT+TGG - chr3_1:51453608-51453627 Msa0361270:intron 35.0%
!! CTGCAGAATATTTTAGGTCT+GGG - chr3_1:51453637-51453656 Msa0361270:intron 35.0%
!! TGCAGAATATTTTAGGTCTG+GGG - chr3_1:51453638-51453657 Msa0361270:intron 35.0%
ATAAACTGCATCACTTCCAA+TGG + chr3_1:51453676-51453695 None:intergenic 35.0%
GCCGAAGAATATTTAAGAAC+TGG - chr3_1:51453699-51453718 Msa0361270:intron 35.0%
GTTGCAATGACTGTCATATT+AGG - chr3_1:51453784-51453803 Msa0361270:intron 35.0%
GAGCAGATATCAAGAGTTTA+TGG - chr3_1:51453830-51453849 Msa0361270:intron 35.0%
ATCAAGAGTTTATGGGAATC+AGG - chr3_1:51453838-51453857 Msa0361270:intron 35.0%
ATAGAAGTAAGCATGACCAT+TGG + chr3_1:51453875-51453894 None:intergenic 35.0%
TGTATTTACATGGATAAGGG+GGG + chr3_1:51453902-51453921 None:intergenic 35.0%
GGTAATAATGAAAAGGAGAG+GGG + chr3_1:51453968-51453987 None:intergenic 35.0%
CGGTAATAATGAAAAGGAGA+GGG + chr3_1:51453969-51453988 None:intergenic 35.0%
ACGGTAATAATGAAAAGGAG+AGG + chr3_1:51453970-51453989 None:intergenic 35.0%
ACAAAAACACACAGAGTAGT+TGG + chr3_1:51454049-51454068 None:intergenic 35.0%
! TATTTTCAATTTGCAGGCAG+TGG - chr3_1:51454114-51454133 Msa0361270:intron 35.0%
ATTGTTTACGTAAACCCTAC+GGG + chr3_1:51454155-51454174 None:intergenic 35.0%
GATTGTTTACGTAAACCCTA+CGG + chr3_1:51454156-51454175 None:intergenic 35.0%
GAAATGGAAAAAACTTCACC+TGG + chr3_1:51454217-51454236 None:intergenic 35.0%
TACATAGGTCAATTGCAAGT+AGG - chr3_1:51454305-51454324 Msa0361270:intron 35.0%
CAATTGCAAGTAGGAAAATC+TGG - chr3_1:51454314-51454333 Msa0361270:intron 35.0%
TAGGAAAATCTGGCATCTTT+AGG - chr3_1:51454324-51454343 Msa0361270:intron 35.0%
! AAATCTGGCATCTTTAGGTT+TGG - chr3_1:51454329-51454348 Msa0361270:intron 35.0%
TCCTACTTCAAACAAGTACT+GGG + chr3_1:51454370-51454389 None:intergenic 35.0%
ATCCTACTTCAAACAAGTAC+TGG + chr3_1:51454371-51454390 None:intergenic 35.0%
! TATATATCCCTTGTTGTGTC+TGG + chr3_1:51454722-51454741 None:intergenic 35.0%
GAGGTTTCATGACTAAGTAA+CGG - chr3_1:51454803-51454822 Msa0361270:intron 35.0%
CATCGCGAGATTATAATTCA+TGG - chr3_1:51455019-51455038 Msa0361270:intron 35.0%
GTCTATTGTAAGGTTAATGG+GGG - chr3_1:51455132-51455151 Msa0361270:intron 35.0%
TCTATTGTAAGGTTAATGGG+GGG - chr3_1:51455133-51455152 Msa0361270:intron 35.0%
AGAATGACAAGTATAAAGGC+CGG + chr3_1:51455492-51455511 None:intergenic 35.0%
AACACATCGGAAAAATGATC+AGG + chr3_1:51455645-51455664 None:intergenic 35.0%
ATGAAGAGTAATATGGCCAT+TGG + chr3_1:51455792-51455811 None:intergenic 35.0%
AGGTAAGCAACAAATGTTGA+AGG + chr3_1:51455815-51455834 None:intergenic 35.0%
!!! GAGAACTTTTTTTATGCGAG+AGG - chr3_1:51455968-51455987 Msa0361270:intron 35.0%
ATGACCATTAAAACAGCATG+AGG - chr3_1:51455999-51456018 Msa0361270:intron 35.0%
TTGTCGCATTATCACATACA+TGG + chr3_1:51456078-51456097 None:intergenic 35.0%
CCATATTCACCCTATATAGA+TGG + chr3_1:51456122-51456141 None:intergenic 35.0%
CCATCTATATAGGGTGAATA+TGG - chr3_1:51456119-51456138 Msa0361270:intron 35.0%
! TGTTCTTTCACTGACTGAAT+AGG + chr3_1:51456250-51456269 None:intergenic 35.0%
ATGAGCAGGTGAGACAATTT+CGG + chr3_1:51447682-51447701 None:intergenic 40.0%
! CCATTGTTTGTTGAATGAGC+AGG + chr3_1:51447696-51447715 None:intergenic 40.0%
CCTGCTCATTCAACAAACAA+TGG - chr3_1:51447693-51447712 Msa0361270:three_prime_UTR 40.0%
GCTCATTCAACAAACAATGG+AGG - chr3_1:51447696-51447715 Msa0361270:three_prime_UTR 40.0%
!!! TTTTGAGATTGCGAGAGAGT+GGG + chr3_1:51447798-51447817 None:intergenic 40.0%
!!! TTTTTGAGATTGCGAGAGAG+TGG + chr3_1:51447799-51447818 None:intergenic 40.0%
!! TCTTCTACTTCCACTGATTC+TGG - chr3_1:51447847-51447866 Msa0361270:three_prime_UTR 40.0%
ACTTTGCTTGATTATGGTGC+TGG - chr3_1:51447970-51447989 Msa0361270:intron 40.0%
!! ATTATGGTGCTGGCAATGTT+CGG - chr3_1:51447980-51447999 Msa0361270:intron 40.0%
AAACGACCGGACTAATTTAG+TGG + chr3_1:51448170-51448189 None:intergenic 40.0%
!! TAGTCCGGTCGTTTTCAAAT+AGG - chr3_1:51448176-51448195 Msa0361270:intron 40.0%
GATCTCCGAAACTAATTCAG+TGG + chr3_1:51448275-51448294 None:intergenic 40.0%
ACTCCTTCTTAGAGGATGAT+AGG - chr3_1:51448313-51448332 Msa0361270:intron 40.0%
CTCCTTCTTAGAGGATGATA+GGG - chr3_1:51448314-51448333 Msa0361270:intron 40.0%
!! TACTAGAGTTTGGGGTCTTT+TGG - chr3_1:51448421-51448440 Msa0361270:intron 40.0%
TGAGAACACCTACAACGTTA+AGG - chr3_1:51448472-51448491 Msa0361270:CDS 40.0%
TTACTTAACACCTCCATAGC+AGG + chr3_1:51448839-51448858 None:intergenic 40.0%
GTTGTAATATTACGCCTGTG+GGG - chr3_1:51448924-51448943 Msa0361270:CDS 40.0%
! TGTCGTAACTTTTGCAGGAT+GGG - chr3_1:51449671-51449690 Msa0361270:intron 40.0%
!! GAAAAGGATCGCCCATTTTT+AGG - chr3_1:51449716-51449735 Msa0361270:intron 40.0%
!! CATCGACTTGGACAAAATCT+TGG + chr3_1:51449913-51449932 None:intergenic 40.0%
!!! CGATAGGATTTTTTATGGGG+CGG - chr3_1:51450105-51450124 Msa0361270:intron 40.0%
!!! GATAGGATTTTTTATGGGGC+GGG - chr3_1:51450106-51450125 Msa0361270:intron 40.0%
!!! ATAGGATTTTTTATGGGGCG+GGG - chr3_1:51450107-51450126 Msa0361270:intron 40.0%
ATGCTGTGTATGTCACACAT+AGG - chr3_1:51450199-51450218 Msa0361270:intron 40.0%
GATCTGATGGAAAGAATCTC+AGG - chr3_1:51450240-51450259 Msa0361270:intron 40.0%
CCATCAAAGAACATCACCAT+TGG + chr3_1:51450331-51450350 None:intergenic 40.0%
! CCAATGGTGATGTTCTTTGA+TGG - chr3_1:51450328-51450347 Msa0361270:CDS 40.0%
AGCACCAATTGATGAGAAGA+TGG - chr3_1:51450459-51450478 Msa0361270:CDS 40.0%
GCATTAAGACGATTTGACCA+TGG - chr3_1:51450490-51450509 Msa0361270:CDS 40.0%
ACCATGGTAAAACTCCATAG+AGG - chr3_1:51450506-51450525 Msa0361270:CDS 40.0%
! TCCTCTATGGAGTTTTACCA+TGG + chr3_1:51450510-51450529 None:intergenic 40.0%
AAAGGTCTTGGCTTAATACC+TGG - chr3_1:51450907-51450926 Msa0361270:CDS 40.0%
TGATGAATCAAATCGCCCAA+CGG + chr3_1:51450935-51450954 None:intergenic 40.0%
GGGCGATTTGATTCATCAAA+TGG - chr3_1:51450937-51450956 Msa0361270:intron 40.0%
AAAGTGGAAACATACAGGCA+TGG + chr3_1:51451070-51451089 None:intergenic 40.0%
TTTATCACCATAGTCACAGG+TGG + chr3_1:51451220-51451239 None:intergenic 40.0%
TCTACTAAAATTGGCCATGG+CGG + chr3_1:51451419-51451438 None:intergenic 40.0%
! TCAGTGTTATCGATTACGGA+TGG + chr3_1:51451486-51451505 None:intergenic 40.0%
GGTCTACGTGATTTAAGGAT+TGG + chr3_1:51451514-51451533 None:intergenic 40.0%
ATTGCGGTCTACGTGATTTA+AGG + chr3_1:51451519-51451538 None:intergenic 40.0%
! GTGGTTTTCATTGAGGTTGA+GGG + chr3_1:51451631-51451650 None:intergenic 40.0%
! TAGTGTCGTGGTTTTCATTG+AGG + chr3_1:51451638-51451657 None:intergenic 40.0%
ATCACCCTAATAGCGAAACT+AGG + chr3_1:51451662-51451681 None:intergenic 40.0%
TTTCGCTATTAGGGTGATAG+CGG - chr3_1:51451664-51451683 Msa0361270:intron 40.0%
GTTTCTACTAGCTGATGTAG+CGG - chr3_1:51451693-51451712 Msa0361270:intron 40.0%
GTGCATTACAGTGAATGTAG+AGG + chr3_1:51451841-51451860 None:intergenic 40.0%
TAATCGGATTCTGCTTGTGT+GGG - chr3_1:51452027-51452046 Msa0361270:intron 40.0%
!! TTCCAGTCTTTATTGGCTCT+TGG - chr3_1:51452275-51452294 Msa0361270:intron 40.0%
TTCCAAGAGCCAATAAAGAC+TGG + chr3_1:51452280-51452299 None:intergenic 40.0%
! ATCATGTTTCCTCCTTTTCG+TGG - chr3_1:51452400-51452419 Msa0361270:intron 40.0%
TCCAAATTCAAGTGTGGCAA+AGG - chr3_1:51452498-51452517 Msa0361270:intron 40.0%
ACCTTTGCCACACTTGAATT+TGG + chr3_1:51452502-51452521 None:intergenic 40.0%
AAATTCAAGTGTGGCAAAGG+TGG - chr3_1:51452501-51452520 Msa0361270:intron 40.0%
AATTCAAGTGTGGCAAAGGT+GGG - chr3_1:51452502-51452521 Msa0361270:intron 40.0%
TTCACTTGAAGACAGAAGAC+TGG - chr3_1:51452605-51452624 Msa0361270:intron 40.0%
! TGTGAGAGCAAATGATAACG+GGG - chr3_1:51452783-51452802 Msa0361270:intron 40.0%
! TACATCATACTGGTCTCCTT+TGG + chr3_1:51452821-51452840 None:intergenic 40.0%
TAACGTTCAACCTTCAATCC+AGG - chr3_1:51453194-51453213 Msa0361270:CDS 40.0%
ACATTGGTAGATCACCAAGA+GGG + chr3_1:51453254-51453273 None:intergenic 40.0%
AACATTGGTAGATCACCAAG+AGG + chr3_1:51453255-51453274 None:intergenic 40.0%
! GTTTTTGTGCCCTTAACAGT+TGG - chr3_1:51453409-51453428 Msa0361270:intron 40.0%
ATTCCACCACCAACTGTTAA+GGG + chr3_1:51453421-51453440 None:intergenic 40.0%
AATTCCACCACCAACTGTTA+AGG + chr3_1:51453422-51453441 None:intergenic 40.0%
!! GCTGCAGAATATTTTAGGTC+TGG - chr3_1:51453636-51453655 Msa0361270:intron 40.0%
TCAGAGATAGCACGATTTAG+AGG + chr3_1:51453763-51453782 None:intergenic 40.0%
! TCTTGATATCTGCTCTAAGC+TGG + chr3_1:51453825-51453844 None:intergenic 40.0%
TAATGGTACATGCACGTTCA+GGG + chr3_1:51453941-51453960 None:intergenic 40.0%
ATAATGGTACATGCACGTTC+AGG + chr3_1:51453942-51453961 None:intergenic 40.0%
AATAATGAAAAGGAGAGGGG+AGG + chr3_1:51453965-51453984 None:intergenic 40.0%
!! TTGTTAGTATTGATCCCCGT+AGG - chr3_1:51454137-51454156 Msa0361270:intron 40.0%
!! TGTTAGTATTGATCCCCGTA+GGG - chr3_1:51454138-51454157 Msa0361270:intron 40.0%
TTGTTTACGTAAACCCTACG+GGG + chr3_1:51454154-51454173 None:intergenic 40.0%
! GTCTGGAATTGCACATCATT+TGG + chr3_1:51454178-51454197 None:intergenic 40.0%
TGTGCAATTCCAGACCATAA+AGG - chr3_1:51454183-51454202 Msa0361270:intron 40.0%
GACTTGAAACCTTTATGGTC+TGG + chr3_1:51454195-51454214 None:intergenic 40.0%
! ACCATAAAGGTTTCAAGTCC+AGG - chr3_1:51454196-51454215 Msa0361270:intron 40.0%
ACCTGGACTTGAAACCTTTA+TGG + chr3_1:51454200-51454219 None:intergenic 40.0%
! AGTACTGGGCATAATTCTTC+AGG + chr3_1:51454356-51454375 None:intergenic 40.0%
! GTTTGAAGTAGGATGTCCTA+TGG - chr3_1:51454377-51454396 Msa0361270:intron 40.0%
CATCTTAAAGTGCACTCACA+AGG + chr3_1:51454443-51454462 None:intergenic 40.0%
!! ATGTTGGTTTCAGGTCCAAA+TGG - chr3_1:51454511-51454530 Msa0361270:intron 40.0%
CAGGCATATTCTTCTCCATT+TGG + chr3_1:51454529-51454548 None:intergenic 40.0%
CAAATGGAGAAGAATATGCC+TGG - chr3_1:51454527-51454546 Msa0361270:intron 40.0%
ACTTACTGTACACTGATACC+AGG + chr3_1:51454548-51454567 None:intergenic 40.0%
!! CTGGTCAAGTTTTGTATGAC+AGG + chr3_1:51454703-51454722 None:intergenic 40.0%
AAACTTGACCAGACACAACA+AGG - chr3_1:51454711-51454730 Msa0361270:intron 40.0%
AACTTGACCAGACACAACAA+GGG - chr3_1:51454712-51454731 Msa0361270:intron 40.0%
TCTCTTAGAATTTCGTCCGA+GGG - chr3_1:51455043-51455062 Msa0361270:intron 40.0%
GCAAAAGCTGTTGAAGAACT+TGG - chr3_1:51455189-51455208 Msa0361270:intron 40.0%
! TTGCTGCTGGCATTTTTCAT+AGG - chr3_1:51455691-51455710 Msa0361270:intron 40.0%
! TGCTGGCATTTTTCATAGGA+AGG - chr3_1:51455695-51455714 Msa0361270:intron 40.0%
! TGGCATTTTTCATAGGAAGG+AGG - chr3_1:51455698-51455717 Msa0361270:intron 40.0%
!!! GTCACCTCATGCTGTTTTAA+TGG + chr3_1:51456006-51456025 None:intergenic 40.0%
CGCATTATCACATACATGGA+TGG + chr3_1:51456074-51456093 None:intergenic 40.0%
TTTCTGTGACTCTTTGGTAC+AGG - chr3_1:51456467-51456486 Msa0361270:five_prime_UTR 40.0%
AGCAGCTGAAATGGGAGATT+TGG + chr3_1:51447650-51447669 None:intergenic 45.0%
! GTCGCTTTAGCAGCTGAAAT+GGG + chr3_1:51447658-51447677 None:intergenic 45.0%
!! AGGAGAGTGGGTTTTTGTGA+CGG + chr3_1:51447765-51447784 None:intergenic 45.0%
GGAATGTGAAGAAGGAGAGT+GGG + chr3_1:51447777-51447796 None:intergenic 45.0%
AGAGAGTGGGAATGTGAAGA+AGG + chr3_1:51447785-51447804 None:intergenic 45.0%
! GTCCCTATCATCCTCTAAGA+AGG + chr3_1:51448319-51448338 None:intergenic 45.0%
GCGGTTTACTCGTTCATGTT+TGG - chr3_1:51448503-51448522 Msa0361270:CDS 45.0%
! TGCAAGCCGTTTAGTCTTTC+CGG - chr3_1:51448796-51448815 Msa0361270:intron 45.0%
CAACACCCGGAAAGACTAAA+CGG + chr3_1:51448805-51448824 None:intergenic 45.0%
TGGGGAGATATATGTGCTGA+CGG - chr3_1:51448942-51448961 Msa0361270:CDS 45.0%
!! GCTGACGGGATTTTGAAAAG+CGG - chr3_1:51448957-51448976 Msa0361270:CDS 45.0%
ACGCAATGCAACCACAATTG+AGG + chr3_1:51449057-51449076 None:intergenic 45.0%
! AGCAGTGTCGTAACTTTTGC+AGG - chr3_1:51449666-51449685 Msa0361270:intron 45.0%
! GTGTCGTAACTTTTGCAGGA+TGG - chr3_1:51449670-51449689 Msa0361270:intron 45.0%
!!! TAGGATTTTTTATGGGGCGG+GGG - chr3_1:51450108-51450127 Msa0361270:intron 45.0%
GCTTAATACCTGGAACCGTT+GGG - chr3_1:51450917-51450936 Msa0361270:CDS 45.0%
ATGTGACAGCCAGAGTAACA+TGG + chr3_1:51451106-51451125 None:intergenic 45.0%
GGTTGTCAAAACATCGACCA+TGG + chr3_1:51451398-51451417 None:intergenic 45.0%
! GTGTTATCGATTACGGATGG+CGG + chr3_1:51451483-51451502 None:intergenic 45.0%
! CGTGGTTTTCATTGAGGTTG+AGG + chr3_1:51451632-51451651 None:intergenic 45.0%
! AAATAGTGGAGGCTGCATAG+CGG + chr3_1:51451955-51451974 None:intergenic 45.0%
GTAATCGGATTCTGCTTGTG+TGG - chr3_1:51452026-51452045 Msa0361270:intron 45.0%
AATCGGATTCTGCTTGTGTG+GGG - chr3_1:51452028-51452047 Msa0361270:intron 45.0%
TTGAAGACAGAAGACTGGTG+AGG - chr3_1:51452610-51452629 Msa0361270:intron 45.0%
TGAAGACAGAAGACTGGTGA+GGG - chr3_1:51452611-51452630 Msa0361270:intron 45.0%
GGTCTCCTTTGGTTACAACA+AGG + chr3_1:51452810-51452829 None:intergenic 45.0%
TACTGTTGAGCAAGCTCAAC+TGG + chr3_1:51453090-51453109 None:intergenic 45.0%
AGAAAGCTGACCTGGATTGA+AGG + chr3_1:51453207-51453226 None:intergenic 45.0%
TGGTGATCTACCAATGTTGC+AGG - chr3_1:51453257-51453276 Msa0361270:intron 45.0%
TTTGTGCCCTTAACAGTTGG+TGG - chr3_1:51453412-51453431 Msa0361270:intron 45.0%
TCAGGTAAGCTAACAGCCAA+TGG - chr3_1:51453856-51453875 Msa0361270:intron 45.0%
AAAAGGAGAGGGGAGGATAA+TGG + chr3_1:51453958-51453977 None:intergenic 45.0%
! GCCCAGTACTTGTTTGAAGT+AGG - chr3_1:51454366-51454385 Msa0361270:intron 45.0%
GTGCACTCACAAGGAAAAAG+AGG + chr3_1:51454434-51454453 None:intergenic 45.0%
GTCTCTTAGAATTTCGTCCG+AGG - chr3_1:51455042-51455061 Msa0361270:intron 45.0%
! GCCAATTGGTGCTTATGAAC+TGG - chr3_1:51455167-51455186 Msa0361270:intron 45.0%
GCCAGTTCATAAGCACCAAT+TGG + chr3_1:51455171-51455190 None:intergenic 45.0%
TTGCCGTAGTTCAGTGCATA+TGG - chr3_1:51455766-51455785 Msa0361270:intron 45.0%
TGGCCATATGCACTGAACTA+CGG + chr3_1:51455772-51455791 None:intergenic 45.0%
AGTTCAGTGCATATGGCCAA+TGG - chr3_1:51455773-51455792 Msa0361270:intron 45.0%
!! TTAAAATATATATACATAAT+TGG - chr3_1:51448361-51448380 Msa0361270:intron 5.0%
!! TGAATTTAAATAAATAAAAA+TGG - chr3_1:51455391-51455410 Msa0361270:intron 5.0%
! CGTCGCTTTAGCAGCTGAAA+TGG + chr3_1:51447659-51447678 None:intergenic 50.0%
! GAGTATGACGGTGTTAACGG+CGG + chr3_1:51447724-51447743 None:intergenic 50.0%
! GGGGAGTATGACGGTGTTAA+CGG + chr3_1:51447727-51447746 None:intergenic 50.0%
! AGGGAAGTAGGGGAGTATGA+CGG + chr3_1:51447736-51447755 None:intergenic 50.0%
!! GTTTTTGTGACGGAGGAGGA+GGG + chr3_1:51447755-51447774 None:intergenic 50.0%
!! AGAGTGGGTTTTTGTGACGG+AGG + chr3_1:51447762-51447781 None:intergenic 50.0%
GGGAATGTGAAGAAGGAGAG+TGG + chr3_1:51447778-51447797 None:intergenic 50.0%
! CTGGCAATGTTCGGAGTGTT+AGG - chr3_1:51447989-51448008 Msa0361270:intron 50.0%
! GCAAGCCGTTTAGTCTTTCC+GGG - chr3_1:51448797-51448816 Msa0361270:intron 50.0%
! CGTTTAGTCTTTCCGGGTGT+TGG - chr3_1:51448803-51448822 Msa0361270:intron 50.0%
! TGGAGCATTTGCACCTGCTA+TGG - chr3_1:51448823-51448842 Msa0361270:intron 50.0%
AGCATTTGCACCTGCTATGG+AGG - chr3_1:51448826-51448845 Msa0361270:intron 50.0%
CAGCACATATATCTCCCCAC+AGG + chr3_1:51448941-51448960 None:intergenic 50.0%
! GGGGAGATATATGTGCTGAC+GGG - chr3_1:51448943-51448962 Msa0361270:CDS 50.0%
!! GGGATTTTGAAAAGCGGTCG+CGG - chr3_1:51448963-51448982 Msa0361270:CDS 50.0%
AGACGATGCAGCCTCAATTG+TGG - chr3_1:51449043-51449062 Msa0361270:intron 50.0%
CAGAGAAACCTTGGAGCGAT+AGG - chr3_1:51450089-51450108 Msa0361270:intron 50.0%
!!! AGGATTTTTTATGGGGCGGG+GGG - chr3_1:51450109-51450128 Msa0361270:intron 50.0%
GGCTTAATACCTGGAACCGT+TGG - chr3_1:51450916-51450935 Msa0361270:CDS 50.0%
GGAAACATACAGGCATGGCA+CGG + chr3_1:51451065-51451084 None:intergenic 50.0%
GTATCCTCCACCTGTGACTA+TGG - chr3_1:51451210-51451229 Msa0361270:intron 50.0%
ATCACCATAGTCACAGGTGG+AGG + chr3_1:51451217-51451236 None:intergenic 50.0%
CAGTTCCATCCAGAGAAGAG+TGG - chr3_1:51451279-51451298 Msa0361270:intron 50.0%
TTCCATCCAGAGAAGAGTGG+AGG - chr3_1:51451282-51451301 Msa0361270:intron 50.0%
AACTTGCCTCCACTCTTCTC+TGG + chr3_1:51451291-51451310 None:intergenic 50.0%
GTGTTGTCGAGTATCAGCCA+TGG - chr3_1:51451378-51451397 Msa0361270:CDS 50.0%
!!! CGATGTTTTGACAACCGCCA+TGG - chr3_1:51451402-51451421 Msa0361270:intron 50.0%
GCGAAACTAGGATAGTGTCG+TGG + chr3_1:51451650-51451669 None:intergenic 50.0%
! TGTTTCCTCCTTTTCGTGGC+TGG - chr3_1:51452404-51452423 Msa0361270:intron 50.0%
AGAATGAGCCAGCCACGAAA+AGG + chr3_1:51452415-51452434 None:intergenic 50.0%
! GGGGACCTTGTTGTAACCAA+AGG - chr3_1:51452802-51452821 Msa0361270:intron 50.0%
GGGGCTGACAAGATATCCAT+TGG - chr3_1:51453657-51453676 Msa0361270:intron 50.0%
!! GCTGTTGAAGAACTTGGTGC+TGG - chr3_1:51455195-51455214 Msa0361270:intron 50.0%
TGAGTCAGTCTTCCCGATTG+AGG - chr3_1:51455444-51455463 Msa0361270:intron 50.0%
TCAGCGCAGATTGCCTCAAT+CGG + chr3_1:51455460-51455479 None:intergenic 50.0%
CAAGTATAAAGGCCGGCTAG+AGG + chr3_1:51455485-51455504 None:intergenic 50.0%
ATCCCTGTGATTGCAAGCAG+TGG - chr3_1:51455609-51455628 Msa0361270:intron 50.0%
CACCACTGCTTGCAATCACA+GGG + chr3_1:51455614-51455633 None:intergenic 50.0%
!! GGTTTTTGTGACGGAGGAGG+AGG + chr3_1:51447756-51447775 None:intergenic 55.0%
!! GTGGGTTTTTGTGACGGAGG+AGG + chr3_1:51447759-51447778 None:intergenic 55.0%
GGTGCAAATGCTCCAACACC+CGG + chr3_1:51448818-51448837 None:intergenic 55.0%
GCGGTCGCGGATAATGATTG+CGG - chr3_1:51448976-51448995 Msa0361270:CDS 55.0%
CGATGCGCACAGAGAAACCT+TGG - chr3_1:51450080-51450099 Msa0361270:intron 55.0%
GCGGACAACTATGTGGCCAA+TGG - chr3_1:51450312-51450331 Msa0361270:CDS 55.0%
TCAAATCGCCCAACGGTTCC+AGG + chr3_1:51450928-51450947 None:intergenic 55.0%
TGCCTCCACTCTTCTCTGGA+TGG + chr3_1:51451287-51451306 None:intergenic 55.0%
ATGAGCCAGCCACGAAAAGG+AGG + chr3_1:51452412-51452431 None:intergenic 55.0%
GGATTTCGCGACTTCCCTCT+TGG - chr3_1:51453237-51453256 Msa0361270:CDS 55.0%
!! GTGCCCTTAACAGTTGGTGG+TGG - chr3_1:51453415-51453434 Msa0361270:intron 55.0%
AAGGTTAATGGGGGGCGAGA+AGG - chr3_1:51455141-51455160 Msa0361270:intron 55.0%
TTAATGGGGGGCGAGAAGGT+CGG - chr3_1:51455145-51455164 Msa0361270:intron 55.0%
CAGCGCAGATTGCCTCAATC+GGG + chr3_1:51455459-51455478 None:intergenic 55.0%
! TCTGCGCTGATACCTCTAGC+CGG - chr3_1:51455470-51455489 Msa0361270:intron 55.0%
GCACCACTGCTTGCAATCAC+AGG + chr3_1:51455615-51455634 None:intergenic 55.0%
GTGATTGCAAGCAGTGGTGC+TGG - chr3_1:51455615-51455634 Msa0361270:intron 55.0%
AATGCCAGCAGCAAGTGCAG+CGG + chr3_1:51455685-51455704 None:intergenic 55.0%
ACGGAGGAGGAGGGAAGTAG+GGG + chr3_1:51447746-51447765 None:intergenic 60.0%
GACGGAGGAGGAGGGAAGTA+GGG + chr3_1:51447747-51447766 None:intergenic 60.0%
TGACGGAGGAGGAGGGAAGT+AGG + chr3_1:51447748-51447767 None:intergenic 60.0%
TTATGGGGCGGGGGGTTAAC+TGG - chr3_1:51450117-51450136 Msa0361270:intron 60.0%
TATGGGGCGGGGGGTTAACT+GGG - chr3_1:51450118-51450137 Msa0361270:intron 60.0%
GGGCGAGAAGGTCGGCCAAT+TGG - chr3_1:51455153-51455172 Msa0361270:intron 65.0%
! GCATCCGCTGCACTTGCTGC+TGG - chr3_1:51455678-51455697 Msa0361270:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 51447620 51456550 51447620 ID=Msa0361270;Name=Msa0361270
chr3_1 mRNA 51447620 51456550 51447620 ID=Msa0361270-mRNA-1;Parent=Msa0361270;Name=Msa0361270-mRNA-1;_AED=0.11;_eAED=0.11;_QI=92|0.88|0.83|1|1|1|18|247|552
chr3_1 exon 51447620 51447926 51447620 ID=Msa0361270-mRNA-1:exon:9211;Parent=Msa0361270-mRNA-1
chr3_1 exon 51448451 51448617 51448451 ID=Msa0361270-mRNA-1:exon:9210;Parent=Msa0361270-mRNA-1
chr3_1 exon 51448921 51449026 51448921 ID=Msa0361270-mRNA-1:exon:9209;Parent=Msa0361270-mRNA-1
chr3_1 exon 51449609 51449646 51449609 ID=Msa0361270-mRNA-1:exon:9208;Parent=Msa0361270-mRNA-1
chr3_1 exon 51449953 51450040 51449953 ID=Msa0361270-mRNA-1:exon:9207;Parent=Msa0361270-mRNA-1
chr3_1 exon 51450311 51450364 51450311 ID=Msa0361270-mRNA-1:exon:9206;Parent=Msa0361270-mRNA-1
chr3_1 exon 51450448 51450556 51450448 ID=Msa0361270-mRNA-1:exon:9205;Parent=Msa0361270-mRNA-1
chr3_1 exon 51450703 51450785 51450703 ID=Msa0361270-mRNA-1:exon:9204;Parent=Msa0361270-mRNA-1
chr3_1 exon 51450892 51450954 51450892 ID=Msa0361270-mRNA-1:exon:9203;Parent=Msa0361270-mRNA-1
chr3_1 exon 51451039 51451101 51451039 ID=Msa0361270-mRNA-1:exon:9202;Parent=Msa0361270-mRNA-1
chr3_1 exon 51451306 51451404 51451306 ID=Msa0361270-mRNA-1:exon:9201;Parent=Msa0361270-mRNA-1
chr3_1 exon 51451512 51451554 51451512 ID=Msa0361270-mRNA-1:exon:9200;Parent=Msa0361270-mRNA-1
chr3_1 exon 51452863 51452981 51452863 ID=Msa0361270-mRNA-1:exon:9199;Parent=Msa0361270-mRNA-1
chr3_1 exon 51453096 51453265 51453096 ID=Msa0361270-mRNA-1:exon:9198;Parent=Msa0361270-mRNA-1
chr3_1 exon 51454379 51454482 51454379 ID=Msa0361270-mRNA-1:exon:9197;Parent=Msa0361270-mRNA-1
chr3_1 exon 51455306 51455400 51455306 ID=Msa0361270-mRNA-1:exon:9196;Parent=Msa0361270-mRNA-1
chr3_1 exon 51456165 51456205 51456165 ID=Msa0361270-mRNA-1:exon:9195;Parent=Msa0361270-mRNA-1
chr3_1 exon 51456302 51456550 51456302 ID=Msa0361270-mRNA-1:exon:9194;Parent=Msa0361270-mRNA-1
chr3_1 five_prime_UTR 51456459 51456550 51456459 ID=Msa0361270-mRNA-1:five_prime_utr;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51456302 51456458 51456302 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51456165 51456205 51456165 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51455306 51455400 51455306 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51454379 51454482 51454379 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51453096 51453265 51453096 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51452863 51452981 51452863 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51451512 51451554 51451512 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51451306 51451404 51451306 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51451039 51451101 51451039 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51450892 51450954 51450892 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51450703 51450785 51450703 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51450448 51450556 51450448 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51450311 51450364 51450311 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51449953 51450040 51449953 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51449609 51449646 51449609 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51448921 51449026 51448921 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51448451 51448617 51448451 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 CDS 51447867 51447926 51447867 ID=Msa0361270-mRNA-1:cds;Parent=Msa0361270-mRNA-1
chr3_1 three_prime_UTR 51447620 51447866 51447620 ID=Msa0361270-mRNA-1:three_prime_utr;Parent=Msa0361270-mRNA-1
Gene Sequence

>Msa0361270

ATGGAGGCGCCGCCGTTAACACCGTCATACTCCCCTACTTCCCTCCTCCTCCGTCACAAAAACCCACTCTCCTTCTTCACATTCCCACTCTCTCGCAATCTCAAAAACCCAACAAATTTCTCTATTCGTGCTTCATCTTCTACTTCCACTGATTCTGTTGTGACTTTGCTTGATTATGGTGCTGGCAATGTTCGGAGTGTTCAAACCCCAGAAGACATTTTGAATGCAAGCCGTTTAGTCTTTCCGGGTGTTGGAGCATTTGCACCTGCTATGGAGGTGTTAAGTAAAACTGGGATGGGTGAAGCACTTTGTTCATATATTGAAAAGGATCGCCCATTTTTAGGCATTTGTCTTGGACTTCAATTGCTTTTTGAATCTAGTGAAGAGAATGGACCAATAAAAGGTCTTGGCTTAATACCTGGAACCGTTGGGCGATTTGATTCATCAAATGGTTTTAGAGTACCACATATTGGATGGAATGCTTTACAAATCACAAAGGACTCAGAAATTTTGGATGATGTTGGAAACCACCATGTCTATTTTGTGCATTCTTACCGTGCCATGCCTTCAGATGATAACAAAGATTGGGTATCCTCCACCTGTGACTATGGTGATAAATTTATAGCATCTATTAGAAGAGGAAATGTGCATGCAGTTCAGTTCCATCCAGAGAAGAGTGGAGGCAAACAGAAGACTGGTGAGGGCAAAGCTTCAAAACTTGCAAAAAGGGTGATTGCTTGTCTCGATGTGAGAGCAAATGATAACGGGGACCTTGTTGTAACCAAAGGAGACCAGTATGATGTAAGAGAAAATACAAAAGAGAACGAGGTTAGGAATCTTGGCAAGCCAGTTGAGCTTGCTCAACAGTACTATAAAGATGGAGCTGATGAGGTCAGCTTTCTAAACATTACTGGATTTCGCGACTTCCCTCTTGGTGATCTACCAATGTTGCAGGTATTGCGATACACATCAGAAAATGTTTTTGTGCCCTTAACAGTTGGTGGTGGAATTCGAGATTTTACAGATTCTAAGGGAAGGCACTATTCTAGTTTGGAAGTAGCTGCAGAATATTTTAGGTCTGGGGCTGACAAGATATCCATTGGAAGTGATGCAGTTTATGCTGCCGAAGAATATTTAAGAACTGGAGTAAAAACAGGGAAGACCAGCTTAGAGCAGATATCAAGAGTTTATGGGAATCAGGCAGTGGTTGTTAGTATTGATCCCCGTAGGGTTTACGTAAACAATCCAAATGATGTGCAATTCCAGACCATAAAGGTTTCAAGTCCAGGTCCAAATGGAGAAGAATATGCCTGGTATCAGTGTACAGTTAATGGGGGGCGAGAAGGTCGGCCAATTGGTGCTTATGAACTGGCAAAAGCTGTTGAAGAACTTGGTGCTGGTGAAATACTATTAAATTGCATCGATTGTGATGGTCAAGGAAAAGGATTCGATGTAGATTTAATTAAGTTGATCTCAGATGCTGTTAATATCCCTGTGATTGCAAGCAGTGGTGCTGGTGTTCCTGATCATTTTTCCGATGTGTTCACTAAAACAAATGCATCCGCTGCACTTGCTGCTGGCATTTTTCATAGGAAGGAGGTACCTATTCAGTCAGTGAAAGAACATTTGTTGAATGAAGGCATAGAAGTCCGAATCTGA

Protein sequence

>Msa0361270

MEAPPLTPSYSPTSLLLRHKNPLSFFTFPLSRNLKNPTNFSIRASSSTSTDSVVTLLDYGAGNVRSVQTPEDILNASRLVFPGVGAFAPAMEVLSKTGMGEALCSYIEKDRPFLGICLGLQLLFESSEENGPIKGLGLIPGTVGRFDSSNGFRVPHIGWNALQITKDSEILDDVGNHHVYFVHSYRAMPSDDNKDWVSSTCDYGDKFIASIRRGNVHAVQFHPEKSGGKQKTGEGKASKLAKRVIACLDVRANDNGDLVVTKGDQYDVRENTKENEVRNLGKPVELAQQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDSKGRHYSSLEVAAEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKTSLEQISRVYGNQAVVVSIDPRRVYVNNPNDVQFQTIKVSSPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDVDLIKLISDAVNIPVIASSGAGVPDHFSDVFTKTNASAALAAGIFHRKEVPIQSVKEHLLNEGIEVRI*