AlfalfaGEDB | Msa1160910

M. sativa cultivar zhongmu-4 / Msa1160910

KEGG: K07375
GO: -
PFAM: PF00091.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1160910	XP_003624926.1	99.109	449	4	0	1	449	1	449	0.0	940

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1160910	sp\|P29514\|TBB6_ARATH	98.423	444	7	0	1	444	1	444	0.0	926

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1160910	G7L5V0	99.109	449	4	0	1	449	1	449	0.0	940

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000560	Msa1160910	0.855725	5.201181e-62	-8.615850e-47
Msa0003080	Msa1160910	0.803761	2.987764e-49	-8.615850e-47
Msa0017960	Msa1160910	0.811191	7.920534e-51	-8.615850e-47
Msa0020370	Msa1160910	0.815807	7.650865e-52	-8.615850e-47
Msa0028440	Msa1160910	0.801219	9.984056e-49	-8.615850e-47
Msa0034210	Msa1160910	0.814255	1.690742e-51	-8.615850e-47
Msa0035340	Msa1160910	0.807541	4.805905e-50	-8.615850e-47
Msa0039790	Msa1160910	0.823878	1.092745e-53	-8.615850e-47
Msa0051920	Msa1160910	0.828579	8.311713e-55	-8.615850e-47
Msa0073120	Msa1160910	0.801833	7.469883e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1160910	MtrunA17_Chr7g0255791	99.109	449	4	0	1	449	1	449	940
Msa1160910	MtrunA17_Chr1g0203181	97.209	430	12	0	1	430	1	430	856
Msa1160910	MtrunA17_Chr4g0008361	96.512	430	15	0	1	430	1	430	853
Msa1160910	MtrunA17_Chr4g0008401	95.814	430	18	0	1	430	1	430	848
Msa1160910	MtrunA17_Chr2g0292921	95.349	430	20	0	1	430	1	430	845
Msa1160910	MtrunA17_Chr4g0051631	93.953	430	26	0	1	430	1	430	834
Msa1160910	MtrunA17_Chr8g0393021	91.461	445	36	2	1	443	1	445	833
Msa1160910	MtrunA17_Chr4g0007371	93.750	432	25	1	1	430	1	432	832
Msa1160910	MtrunA17_Chr3g0142731	93.519	432	26	1	1	430	1	432	832
Msa1160910	MtrunA17_Chr8g0386781	92.326	430	33	0	1	430	1	430	823

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1160910	AT5G12250.1	98.423	444	7	0	1	444	1	444	926
Msa1160910	AT5G62690.1	96.279	430	16	0	1	430	1	430	853
Msa1160910	AT5G62700.1	96.279	430	16	0	1	430	1	430	853
Msa1160910	AT5G23860.2	96.744	430	14	0	1	430	1	430	852
Msa1160910	AT5G23860.1	96.744	430	14	0	1	430	1	430	852
Msa1160910	AT2G29550.1	95.824	431	18	0	1	431	1	431	847
Msa1160910	AT1G75780.1	92.889	450	27	2	1	449	1	446	833
Msa1160910	AT1G20010.1	93.039	431	29	1	1	430	1	431	830
Msa1160910	AT5G44340.1	92.558	430	32	0	1	430	1	430	828
Msa1160910	AT4G20890.1	92.558	430	32	0	1	430	1	430	825

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Find 176 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGTGGACAAAATATAT+TGG	0.386515	7_4:+51041714	None:intergenic
AACATACAGAAACAAATAGA+TGG	0.359403	7_4:+51039059	None:intergenic
AACGTCAACATCATCCTATC+AGG	0.441581	7_4:+51040939	None:intergenic
AACTTCGTCTTCGGTCAGTC+CGG	0.442188	7_4:-51041240	Msa1160910:CDS
AAGAAGTGCAGACGAGGGAA+TGG	0.475598	7_4:+51039842	None:intergenic
AAGCTAATTACAAAGGATAG+AGG	0.500490	7_4:+51039194	None:intergenic
AAGTCCATGAGGATGGCGCG+TGG	0.636612	7_4:+51041324	None:intergenic
AAGTGATGTAGATCGTTGGA+TGG	0.609426	7_4:+51041757	None:intergenic
AATTCAGGAAATGTTTAGGA+GGG	0.609115	7_4:-51039498	Msa1160910:CDS
AATTTACTGCTATGTTTAGG+AGG	0.549323	7_4:-51039466	Msa1160910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTATGATGTATGTACGAAA+AGG	+	chr7_4:51038914-51038933	None:intergenic	30.0%
CACCTCTTCAATAAAAATGA+AGG	-	chr7_4:51038942-51038961	Msa1160910:three_prime_UTR	30.0%
TGAAGCAAAGAAATTGTGAT+GGG	+	chr7_4:51039002-51039021	None:intergenic	30.0%
TTGAAGCAAAGAAATTGTGA+TGG	+	chr7_4:51039003-51039022	None:intergenic	30.0%
GAACAATTTGAACAGTGAAA+CGG	+	chr7_4:51039313-51039332	None:intergenic	30.0%
AGAGAAATTCTTCATGTTCA+AGG	-	chr7_4:51039349-51039368	Msa1160910:CDS	30.0%
ACAGAAAGAGTAGCATTATA+AGG	+	chr7_4:51039980-51039999	None:intergenic	30.0%
ATTAGTTAGATCAGACTTCT+TGG	-	chr7_4:51040207-51040226	Msa1160910:intron	30.0%
TGGTGATTCTTAACTACTAA+TGG	-	chr7_4:51040712-51040731	Msa1160910:intron	30.0%
AATTCAGGAAATGTTTAGGA+GGG	-	chr7_4:51041352-51041371	Msa1160910:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	51038861	51042011	51038861	ID=Msa1160910;Name=Msa1160910
chr7_4	mRNA	51038861	51042011	51038861	ID=Msa1160910-mRNA-1;Parent=Msa1160910;Name=Msa1160910-mRNA-1;_AED=0.10;_eAED=0.10;_QI=387\|1\|1\|1\|0.66\|0.5\|4\|428\|449
chr7_4	exon	51038861	51039974	51038861	ID=Msa1160910-mRNA-1:exon:14364;Parent=Msa1160910-mRNA-1
chr7_4	exon	51040775	51041044	51040775	ID=Msa1160910-mRNA-1:exon:14363;Parent=Msa1160910-mRNA-1
chr7_4	exon	51041133	51041530	51041133	ID=Msa1160910-mRNA-1:exon:14362;Parent=Msa1160910-mRNA-1
chr7_4	exon	51041629	51042011	51041629	ID=Msa1160910-mRNA-1:exon:14361;Parent=Msa1160910-mRNA-1
chr7_4	five_prime_UTR	51041629	51042011	51041629	ID=Msa1160910-mRNA-1:five_prime_utr;Parent=Msa1160910-mRNA-1
chr7_4	five_prime_UTR	51041527	51041530	51041527	ID=Msa1160910-mRNA-1:five_prime_utr;Parent=Msa1160910-mRNA-1
chr7_4	CDS	51041133	51041526	51041133	ID=Msa1160910-mRNA-1:cds;Parent=Msa1160910-mRNA-1
chr7_4	CDS	51040775	51041044	51040775	ID=Msa1160910-mRNA-1:cds;Parent=Msa1160910-mRNA-1
chr7_4	CDS	51039289	51039974	51039289	ID=Msa1160910-mRNA-1:cds;Parent=Msa1160910-mRNA-1
chr7_4	three_prime_UTR	51038861	51039288	51038861	ID=Msa1160910-mRNA-1:three_prime_utr;Parent=Msa1160910-mRNA-1

Gene Sequence

>Msa1160910

ATGAGAGAAATTCTTCATGTTCAAGGAGGACAATGCGGGAACCAGATCGGTTCAAAATTCTGGGAAGTAGTTTGCGACGAGCACGGCATAGATCCAACCGGAAGATACGTCGGAAACTCAGATCTACAACTTGAGCGCGTCAATGTTTACTACAACGAAGCCTCCTGTGGAAGGTTTGTTCCACGCGCCATCCTCATGGACTTGGAGCCTGGTACAATGGACAGTGTTCGCACTGGTCCTTACGGTCAGATCTTCCGTCCTGATAACTTCGTCTTCGGTCAGTCCGGTGCCGGTAACAATTGGGCGAAAGGACATTACACTGAAGGCGCTGAACTTATTGATTCAGTTCTCGATGTTGTTCGTAAAGAGGCTGAGAATTGTGATTGTCTTCAAGGGTTTCAGGTGTGTCATTCATTGGGAGGAGGAACGGGATCTGGAATGGGAACTTTGTTGATTTCGAAGATTAGAGAGGAATATCCTGATAGGATGATGTTGACGTTTTCGGTGTTTCCTTCACCGAAGGTTTCTGATACTGTTGTTGAGCCTTATAATGCTACTCTTTCTGTTCATCAGTTGGTAGAAAATGCTGATGAGTGTATGGTTCTTGATAATGAGGCGCTTTATGATATCTGCTTCAGGACTCTTAAATTGACTACTCCTAGCTTTGGTGACTTGAACCACTTGATCTCAGCAACCATGAGTGGAGTGACTTGCTGTCTTCGTTTCCCTGGTCAACTCAACTCTGATCTCCGGAAACTGGCTGTGAATCTCATCCCATTCCCTCGTCTGCACTTCTTCATGGTCGGTTTTGCTCCTCTCACATCCCGTGGCTCTCAGCAATACCGTGCATTGACTGTTCCAGAACTCACCCAGCAGATGTGGGATTCCAAGAACATGATGTGTGCTGCTGATCCTAGGCATGGTCGCTACCTCACTGCTTCTGCCATGTTCAGGGGTAAGATGAGCACCAAAGAGGTGGATGAGCAAATGATAAATGTCCAGAACAAGAACTCTTCCTACTTTGTTGAGTGGATCCCAAACAATGTTAAATCAAGTGTTTGTGACATTGCTCCTCGAGGTCTCTCCATGGCCTCCACCTTTATTGGTAACTCAACCTCAATTCAGGAAATGTTTAGGAGGGTGAGCGAGCAATTTACTGCTATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACTGGTGAAGGCATGGATGAGATGGAATTCACAGAAGCTGAGAGCAACATGAATGACCTCGTGTCTGAGTACCAGCAGTACCAGGATGCCACTGCTGATGAAGAAGGAGAATATGAGGACGAAGAGGACGAGGAGCAAGAGCATGCTTATGAATAA

Protein sequence

>Msa1160910

MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRFVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEDEEQEHAYE*