Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0307280 | XP_003624926.1 | 99.109 | 449 | 4 | 0 | 1 | 449 | 1 | 449 | 0.0 | 940 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0307280 | sp|P29514|TBB6_ARATH | 98.423 | 444 | 7 | 0 | 1 | 444 | 1 | 444 | 0.0 | 926 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000560 | Msa0307280 | 0.823918 | 1.069377e-53 | -8.615850e-47 |
| Msa0002420 | Msa0307280 | 0.802326 | 5.916970e-49 | -8.615850e-47 |
| Msa0017960 | Msa0307280 | 0.826366 | 2.821707e-54 | -8.615850e-47 |
| Msa0028440 | Msa0307280 | 0.804352 | 2.250971e-49 | -8.615850e-47 |
| Msa0051920 | Msa0307280 | 0.833376 | 5.525101e-56 | -8.615850e-47 |
| Msa0078500 | Msa0307280 | 0.852066 | 5.890386e-61 | -8.615850e-47 |
| Msa0089950 | Msa0307280 | 0.802335 | 5.892287e-49 | -8.615850e-47 |
| Msa0125870 | Msa0307280 | 0.813753 | 2.182295e-51 | -8.615850e-47 |
| Msa0126210 | Msa0307280 | 0.866946 | 1.965524e-65 | -8.615850e-47 |
| Msa0164610 | Msa0307280 | 0.819352 | 1.214823e-52 | -8.615850e-47 |
| Msa0168480 | Msa0307280 | 0.810789 | 9.681411e-51 | -8.615850e-47 |
| Msa0293040 | Msa0307280 | 0.805525 | 1.280206e-49 | -8.615850e-47 |
| Msa0307280 | Msa0358280 | 0.823657 | 1.230877e-53 | -8.615850e-47 |
| Msa0307280 | Msa0358310 | 0.823816 | 1.129914e-53 | -8.615850e-47 |
| Msa0307280 | Msa0361270 | 0.801653 | 8.134374e-49 | -8.615850e-47 |
| Msa0307280 | Msa0383320 | 0.804639 | 1.961081e-49 | -8.615850e-47 |
| Msa0307280 | Msa0401060 | 0.805981 | 1.026641e-49 | -8.615850e-47 |
| Msa0307280 | Msa0421180 | 0.819570 | 1.083492e-52 | -8.615850e-47 |
| Msa0307280 | Msa0427930 | 0.815796 | 7.695520e-52 | -8.615850e-47 |
| Msa0307280 | Msa0433470 | 0.803487 | 3.405515e-49 | -8.615850e-47 |
| Msa0307280 | Msa0465610 | 0.800739 | 1.251405e-48 | -8.615850e-47 |
| Msa0307280 | Msa0465810 | 0.831501 | 1.610660e-55 | -8.615850e-47 |
| Msa0307280 | Msa0484150 | 0.806340 | 8.626108e-50 | -8.615850e-47 |
| Msa0307280 | Msa0492900 | 0.801285 | 9.677781e-49 | -8.615850e-47 |
| Msa0307280 | Msa0500380 | 0.801993 | 6.926306e-49 | -8.615850e-47 |
| Msa0307280 | Msa0518590 | 0.809400 | 1.927924e-50 | -8.615850e-47 |
| Msa0307280 | Msa0618240 | 0.813112 | 3.018698e-51 | -8.615850e-47 |
| Msa0307280 | Msa0660370 | 0.812657 | 3.796876e-51 | -8.615850e-47 |
| Msa0307280 | Msa0681260 | 0.812185 | 4.815136e-51 | -8.615850e-47 |
| Msa0307280 | Msa0681280 | 0.808529 | 2.962296e-50 | -8.615850e-47 |
| Msa0307280 | Msa0685480 | 0.807356 | 5.261134e-50 | -8.615850e-47 |
| Msa0307280 | Msa0687460 | 0.827953 | 1.176554e-54 | -8.615850e-47 |
| Msa0307280 | Msa0692790 | 0.811576 | 6.532483e-51 | -8.615850e-47 |
| Msa0307280 | Msa0702000 | 0.818910 | 1.531504e-52 | -8.615850e-47 |
| Msa0307280 | Msa0778550 | 0.809458 | 1.873901e-50 | -8.615850e-47 |
| Msa0307280 | Msa0880270 | 0.822670 | 2.092459e-53 | -8.615850e-47 |
| Msa0307280 | Msa0981320 | 0.816231 | 6.151002e-52 | -8.615850e-47 |
| Msa0307280 | Msa0982650 | 0.810254 | 1.263000e-50 | -8.615850e-47 |
| Msa0307280 | Msa1003800 | 0.801154 | 1.029166e-48 | -8.615850e-47 |
| Msa0307280 | Msa1034600 | 0.812610 | 3.887049e-51 | -8.615850e-47 |
| Msa0307280 | Msa1037640 | 0.821856 | 3.232583e-53 | -8.615850e-47 |
| Msa0307280 | Msa1072960 | 0.995343 | 2.511478e-215 | -8.615850e-47 |
| Msa0307280 | Msa1104110 | 0.814389 | 1.579703e-51 | -8.615850e-47 |
| Msa0307280 | Msa1113340 | 0.837331 | 5.536215e-57 | -8.615850e-47 |
| Msa0307280 | Msa1123200 | 0.804314 | 2.292140e-49 | -8.615850e-47 |
| Msa0307280 | Msa1123210 | 0.830161 | 3.431979e-55 | -8.615850e-47 |
| Msa0307280 | Msa1130280 | 0.822539 | 2.244493e-53 | -8.615850e-47 |
| Msa0307280 | Msa1147700 | 0.825180 | 5.395336e-54 | -8.615850e-47 |
| Msa0307280 | Msa1160910 | 0.978320 | 1.405106e-145 | -8.615850e-47 |
| Msa0307280 | Msa1167470 | 0.804301 | 2.306743e-49 | -8.615850e-47 |
| Msa0307280 | Msa1216340 | 0.802503 | 5.438922e-49 | -8.615850e-47 |
| Msa0307280 | Msa1242020 | 0.820713 | 5.929417e-53 | -8.615850e-47 |
| Msa0307280 | Msa1305250 | 0.800311 | 1.529936e-48 | -8.615850e-47 |
| Msa0307280 | Msa1306640 | 0.826975 | 2.019954e-54 | -8.615850e-47 |
| Msa0307280 | Msa1315130 | 0.809462 | 1.870043e-50 | -8.615850e-47 |
| Msa0307280 | Msa1322430 | 0.824721 | 6.922781e-54 | -8.615850e-47 |
| Msa0307280 | Msa1360960 | 0.815410 | 9.377081e-52 | -8.615850e-47 |
| Msa0307280 | Msa1375280 | 0.812648 | 3.813775e-51 | -8.615850e-47 |
| Msa0307280 | Msa1411790 | 0.808658 | 2.779233e-50 | -8.615850e-47 |
| Msa0307280 | Msa1430440 | 0.806966 | 6.364306e-50 | -8.615850e-47 |
| Msa0307280 | Msa1462490 | 0.800598 | 1.336761e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0307280 | MtrunA17_Chr7g0255791 | 99.109 | 449 | 4 | 0 | 1 | 449 | 1 | 449 | 0.0 | 940 |
| Msa0307280 | MtrunA17_Chr1g0203181 | 97.209 | 430 | 12 | 0 | 1 | 430 | 1 | 430 | 0.0 | 856 |
| Msa0307280 | MtrunA17_Chr4g0008361 | 96.512 | 430 | 15 | 0 | 1 | 430 | 1 | 430 | 0.0 | 853 |
| Msa0307280 | MtrunA17_Chr4g0008401 | 95.814 | 430 | 18 | 0 | 1 | 430 | 1 | 430 | 0.0 | 848 |
| Msa0307280 | MtrunA17_Chr2g0292921 | 95.349 | 430 | 20 | 0 | 1 | 430 | 1 | 430 | 0.0 | 845 |
| Msa0307280 | MtrunA17_Chr4g0051631 | 93.953 | 430 | 26 | 0 | 1 | 430 | 1 | 430 | 0.0 | 834 |
| Msa0307280 | MtrunA17_Chr8g0393021 | 91.461 | 445 | 36 | 2 | 1 | 443 | 1 | 445 | 0.0 | 833 |
| Msa0307280 | MtrunA17_Chr4g0007371 | 93.750 | 432 | 25 | 1 | 1 | 430 | 1 | 432 | 0.0 | 832 |
| Msa0307280 | MtrunA17_Chr3g0142731 | 93.519 | 432 | 26 | 1 | 1 | 430 | 1 | 432 | 0.0 | 832 |
| Msa0307280 | MtrunA17_Chr8g0386781 | 92.326 | 430 | 33 | 0 | 1 | 430 | 1 | 430 | 0.0 | 823 |
| Msa0307280 | MtrunA17_Chr8g0378821 | 41.244 | 434 | 245 | 3 | 1 | 424 | 1 | 434 | 7.91e-124 | 367 |
| Msa0307280 | MtrunA17_Chr1g0206881 | 41.280 | 453 | 246 | 5 | 1 | 440 | 1 | 446 | 3.65e-123 | 365 |
| Msa0307280 | MtrunA17_Chr3g0140821 | 41.648 | 437 | 239 | 4 | 1 | 424 | 1 | 434 | 4.48e-123 | 365 |
| Msa0307280 | MtrunA17_Chr4g0054511 | 41.419 | 437 | 240 | 4 | 1 | 424 | 1 | 434 | 1.56e-122 | 364 |
| Msa0307280 | MtrunA17_Chr7g0253411 | 40.553 | 434 | 248 | 3 | 1 | 424 | 1 | 434 | 4.46e-122 | 363 |
| Msa0307280 | MtrunA17_Chr6g0461281 | 39.910 | 446 | 257 | 3 | 1 | 435 | 1 | 446 | 1.24e-119 | 356 |
| Msa0307280 | MtrunA17_Chr2g0300671 | 37.045 | 440 | 264 | 5 | 1 | 431 | 1 | 436 | 7.28e-100 | 305 |
| Msa0307280 | MtrunA17_Chr2g0300491 | 36.564 | 454 | 272 | 6 | 1 | 445 | 1 | 447 | 5.99e-99 | 305 |
| Msa0307280 | MtrunA17_Chr7g0275431 | 34.932 | 438 | 268 | 7 | 2 | 423 | 3 | 439 | 5.75e-95 | 294 |
| Msa0307280 | MtrunA17_Chr3g0109241 | 31.111 | 135 | 85 | 2 | 269 | 395 | 4 | 138 | 7.09e-20 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0307280 | AT5G12250.1 | 98.423 | 444 | 7 | 0 | 1 | 444 | 1 | 444 | 0.0 | 926 |
| Msa0307280 | AT5G62690.1 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 853 |
| Msa0307280 | AT5G62700.1 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 853 |
| Msa0307280 | AT5G23860.2 | 96.744 | 430 | 14 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| Msa0307280 | AT5G23860.1 | 96.744 | 430 | 14 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| Msa0307280 | AT2G29550.1 | 95.824 | 431 | 18 | 0 | 1 | 431 | 1 | 431 | 0.0 | 847 |
| Msa0307280 | AT1G75780.1 | 92.889 | 450 | 27 | 2 | 1 | 449 | 1 | 446 | 0.0 | 833 |
| Msa0307280 | AT1G20010.1 | 93.039 | 431 | 29 | 1 | 1 | 430 | 1 | 431 | 0.0 | 830 |
| Msa0307280 | AT5G44340.1 | 92.558 | 430 | 32 | 0 | 1 | 430 | 1 | 430 | 0.0 | 828 |
| Msa0307280 | AT4G20890.1 | 92.558 | 430 | 32 | 0 | 1 | 430 | 1 | 430 | 0.0 | 825 |
| Msa0307280 | AT1G64740.1 | 41.244 | 434 | 245 | 3 | 1 | 424 | 1 | 434 | 3.81e-124 | 369 |
| Msa0307280 | AT5G19780.1 | 41.244 | 434 | 245 | 3 | 1 | 424 | 1 | 434 | 8.23e-124 | 367 |
| Msa0307280 | AT5G19770.1 | 41.244 | 434 | 245 | 3 | 1 | 424 | 1 | 434 | 8.23e-124 | 367 |
| Msa0307280 | AT1G50010.1 | 41.648 | 437 | 239 | 4 | 1 | 424 | 1 | 434 | 6.17e-122 | 363 |
| Msa0307280 | AT1G04820.1 | 41.648 | 437 | 239 | 4 | 1 | 424 | 1 | 434 | 6.17e-122 | 363 |
| Msa0307280 | AT4G14960.2 | 41.648 | 437 | 239 | 4 | 1 | 424 | 1 | 434 | 6.37e-122 | 363 |
| Msa0307280 | AT4G14960.1 | 41.645 | 389 | 211 | 4 | 1 | 376 | 1 | 386 | 2.87e-102 | 311 |
| Msa0307280 | AT5G05620.1 | 35.160 | 438 | 267 | 7 | 2 | 423 | 3 | 439 | 3.12e-95 | 295 |
| Msa0307280 | AT3G61650.1 | 35.160 | 438 | 267 | 7 | 2 | 423 | 3 | 439 | 4.59e-95 | 295 |
Find 177 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGCTCTGTTGTCCAAAT+TGG | 0.193911 | 2_4:-181381 | None:intergenic |
| ACCAGATCGGTTCAAAATTC+TGG | 0.202910 | 2_4:+179051 | Msa0307280:CDS |
| CCCTCGTCTGCACTTCTTCA+TGG | 0.225491 | 2_4:+180667 | Msa0307280:CDS |
| TCCATGGCCTCCACCTTTAT+TGG | 0.234232 | 2_4:+180971 | Msa0307280:CDS |
| ACACTTGATTTAACATTGTT+TGG | 0.235866 | 2_4:-180923 | None:intergenic |
| TGAGATTCACAGCCAGTTTC+CGG | 0.253872 | 2_4:-180637 | None:intergenic |
| TCACTGCTTCTGCCATGTTC+AGG | 0.262035 | 2_4:+180819 | Msa0307280:CDS |
| CATTTGCTCATCCACCTCTT+TGG | 0.277735 | 2_4:-180855 | None:intergenic |
| CACATCTGCTGGGTGAGTTC+TGG | 0.279765 | 2_4:-180746 | None:intergenic |
| GTTATTGAAGCAAAGAAATT+AGG | 0.285359 | 2_4:-178676 | None:intergenic |
| TGGTAACTCAACCTCAATTC+AGG | 0.292483 | 2_4:+180991 | Msa0307280:CDS |
| ATAAAGAATCAAGAATGTTT+TGG | 0.314574 | 2_4:-178556 | None:intergenic |
| TTGTTTCTTATATCTGCTAT+TGG | 0.318496 | 2_4:+181479 | Msa0307280:three_prime_UTR |
| AGCAGCACACATCATGTTCT+TGG | 0.331795 | 2_4:-180774 | None:intergenic |
| TGACCGAAGACGAAGTTATC+AGG | 0.336132 | 2_4:-179269 | None:intergenic |
| GACGAGTTTGGATGGGAAAA+TGG | 0.336979 | 2_4:-178857 | None:intergenic |
| TGAGGTTGAGTTACCAATAA+AGG | 0.339217 | 2_4:-180984 | None:intergenic |
| TCCTTTCGCCCAATTGTTAC+CGG | 0.341476 | 2_4:-179300 | None:intergenic |
| TTCGCTCTGTTGTCCAAATT+GGG | 0.342585 | 2_4:-181380 | None:intergenic |
| CCTCAATTCAGGAAATGTTT+AGG | 0.342965 | 2_4:+181002 | Msa0307280:CDS |
| ATCTATTTGTTTCTGTATGT+TGG | 0.344897 | 2_4:+181447 | Msa0307280:three_prime_UTR |
| TCTTGGAATCCCACATCTGC+TGG | 0.346211 | 2_4:-180757 | None:intergenic |
| CGCTTTATGATATCTGCTTC+AGG | 0.346443 | 2_4:+179715 | Msa0307280:CDS |
| AGTCCGGTGCCGGTAACAAT+TGG | 0.346744 | 2_4:+179291 | Msa0307280:CDS |
| GTTTCAGGTGTGTCATTCAT+TGG | 0.347553 | 2_4:+179494 | Msa0307280:CDS |
| CACTTGATTTAACATTGTTT+GGG | 0.358488 | 2_4:-180922 | None:intergenic |
| AACATACAGAAACAAATAGA+TGG | 0.359403 | 2_4:-181445 | None:intergenic |
| ATAGGAATGACAAACTATTA+AGG | 0.365870 | 2_4:-181511 | None:intergenic |
| CAACTCTGATCTCCGGAAAC+TGG | 0.369333 | 2_4:+180625 | Msa0307280:CDS |
| ACAGAAAGAGTAGCATTATA+AGG | 0.371726 | 2_4:-179642 | None:intergenic |
| GAGTGAGAGAGTGACGAGTT+TGG | 0.377145 | 2_4:-178869 | None:intergenic |
| GACAACAGAGCGAAGGGTAG+TGG | 0.379950 | 2_4:+181389 | Msa0307280:three_prime_UTR |
| GAGAATTGTGATTGTCTTCA+AGG | 0.384367 | 2_4:+179383 | Msa0307280:CDS |
| TTTCAGGTGTGTCATTCATT+GGG | 0.392158 | 2_4:+179495 | Msa0307280:CDS |
| CATTCATTGGGAGGAGGAAC+TGG | 0.394091 | 2_4:+179507 | Msa0307280:CDS |
| AGTAGGAAGAGTTCTTGTTC+TGG | 0.394999 | 2_4:-180886 | None:intergenic |
| AGCAATTTACTGCTATGTTT+AGG | 0.401883 | 2_4:+181035 | Msa0307280:CDS |
| CACTGCTTCTGCCATGTTCA+GGG | 0.405397 | 2_4:+180820 | Msa0307280:CDS |
| AAAATGTGGACAAAATATAT+TGG | 0.405451 | 2_4:-178803 | None:intergenic |
| AGAGAATGGAGATCCCAATT+TGG | 0.413216 | 2_4:+181367 | Msa0307280:three_prime_UTR |
| CCTAAACATTTCCTGAATTG+AGG | 0.415373 | 2_4:-181002 | None:intergenic |
| GAGAGAGTGACGAGTTTGGA+TGG | 0.420666 | 2_4:-178865 | None:intergenic |
| CGCCCAATTGTTACCGGCAC+CGG | 0.422209 | 2_4:-179294 | None:intergenic |
| ACTTGCTGTCTTCGTTTCCC+TGG | 0.423010 | 2_4:+180596 | Msa0307280:CDS |
| AGAGAAATTCTTCATGTTCA+AGG | 0.425268 | 2_4:+179014 | Msa0307280:CDS |
| TGAGTTTCCGACGTATCTTC+CGG | 0.427531 | 2_4:-179108 | None:intergenic |
| TTGGGAGGAGGAACTGGATC+TGG | 0.429347 | 2_4:+179513 | Msa0307280:CDS |
| CCAGATCGGTTCAAAATTCT+GGG | 0.430206 | 2_4:+179052 | Msa0307280:CDS |
| ACGCGCCATCCTCATGGACT+TGG | 0.430677 | 2_4:+179193 | Msa0307280:CDS |
| TAAACCGCACATATATCTAT+TGG | 0.435124 | 2_4:+181625 | Msa0307280:three_prime_UTR |
| AACGTCAACATCATCCTATC+AGG | 0.441581 | 2_4:-179576 | None:intergenic |
| AACTTCGTCTTCGGTCAGTC+CGG | 0.442188 | 2_4:+179275 | Msa0307280:CDS |
| CGTCTGCACTTCTTCATGGT+CGG | 0.448628 | 2_4:+180671 | Msa0307280:CDS |
| CGAGCTGGATGTGGAGAGAA+TGG | 0.452558 | 2_4:+181353 | Msa0307280:three_prime_UTR |
| TACTCTTTCTGTTCATCAGT+TGG | 0.454328 | 2_4:+179653 | Msa0307280:CDS |
| ACCAATAAAGGTGGAGGCCA+TGG | 0.456675 | 2_4:-180972 | None:intergenic |
| CAGTGGCATCCTGGTACTGC+TGG | 0.458734 | 2_4:-181153 | None:intergenic |
| ATCCTCATGGACTTGGAGCC+TGG | 0.462721 | 2_4:+179200 | Msa0307280:CDS |
| TACTGCTATGTTTAGGAGGA+AGG | 0.463039 | 2_4:+181042 | Msa0307280:CDS |
| TCTCGATGTTGTTCGTAAAG+AGG | 0.464617 | 2_4:+179358 | Msa0307280:CDS |
| GGACTTGGAGCCTGGTACAA+TGG | 0.467426 | 2_4:+179208 | Msa0307280:CDS |
| CGTCCTGATAACTTCGTCTT+CGG | 0.467522 | 2_4:+179266 | Msa0307280:CDS |
| AGGAGGAACTGGATCTGGAA+TGG | 0.468617 | 2_4:+179518 | Msa0307280:CDS |
| GGAGGAACTGGATCTGGAAT+GGG | 0.469656 | 2_4:+179519 | Msa0307280:CDS |
| CTTCATCAGCAGTGGCATCC+TGG | 0.470075 | 2_4:-181162 | None:intergenic |
| GGATGGGAAAATGGTTGAGC+GGG | 0.475027 | 2_4:-178848 | None:intergenic |
| TTCGGTGTTTCCTTCACCGA+AGG | 0.475471 | 2_4:+179599 | Msa0307280:CDS |
| AAGAAGTGCAGACGAGGGAA+TGG | 0.475598 | 2_4:-180662 | None:intergenic |
| ATGTGCGGTTTAACGTTGTT+CGG | 0.478040 | 2_4:-181614 | None:intergenic |
| GGAGGAAGGCTTTCTTGCAT+TGG | 0.483915 | 2_4:+181056 | Msa0307280:CDS |
| GATCGTTGGATGGAAACCTT+TGG | 0.485733 | 2_4:-178750 | None:intergenic |
| GTCTTCGGTCAGTCCGGTGC+CGG | 0.488348 | 2_4:+179281 | Msa0307280:CDS |
| GTCCGGTGCCGGTAACAATT+GGG | 0.494376 | 2_4:+179292 | Msa0307280:CDS |
| GCTTTCTTGCATTGGTACAC+TGG | 0.499379 | 2_4:+181064 | Msa0307280:CDS |
| AAGCTAATTACAAAGGATAG+AGG | 0.500490 | 2_4:-181310 | None:intergenic |
| TGTTCCACGCGCCATCCTCA+TGG | 0.500720 | 2_4:+179187 | Msa0307280:CDS |
| CAGAACTCACCCAGCAGATG+TGG | 0.503870 | 2_4:+180747 | Msa0307280:CDS |
| TTAGAGAGGAATATCCTGAT+AGG | 0.506228 | 2_4:+179562 | Msa0307280:CDS |
| GTCAACTCAACTCTGATCTC+CGG | 0.506307 | 2_4:+180618 | Msa0307280:CDS |
| TGATGTGTGCTGCTGATCCT+AGG | 0.510462 | 2_4:+180783 | Msa0307280:CDS |
| AGATCAGAGTTGAGTTGACC+AGG | 0.512852 | 2_4:-180614 | None:intergenic |
| CAGGTGTGTCATTCATTGGG+AGG | 0.513562 | 2_4:+179498 | Msa0307280:CDS |
| CCTTGTGTTGAATGACGAAA+TGG | 0.514569 | 2_4:-178638 | None:intergenic |
| CTCATCTTCATCACTATCAC+AGG | 0.518767 | 2_4:+178889 | Msa0307280:five_prime_UTR |
| TTGCATTGGTACACTGGTGA+AGG | 0.524227 | 2_4:+181070 | Msa0307280:CDS |
| AGAAGTGCAGACGAGGGAAT+GGG | 0.530868 | 2_4:-180661 | None:intergenic |
| CGAACACTGTCCATTGTACC+AGG | 0.531519 | 2_4:-179218 | None:intergenic |
| TGATGAAGAAGGAGAATATG+AGG | 0.535322 | 2_4:+181177 | Msa0307280:CDS |
| CTTGGAATCCCACATCTGCT+GGG | 0.536021 | 2_4:-180756 | None:intergenic |
| AGAGAGTGACGAGTTTGGAT+GGG | 0.536270 | 2_4:-178864 | None:intergenic |
| TTTCCGACGTATCTTCCGGT+TGG | 0.537588 | 2_4:-179104 | None:intergenic |
| GTCTGAGTACCAGCAGTACC+AGG | 0.537588 | 2_4:+181144 | Msa0307280:CDS |
| ACTCTTCCTACTTTGTTGAG+TGG | 0.537980 | 2_4:+180897 | Msa0307280:CDS |
| AGAAAATGCTGATGAGTGTA+TGG | 0.538616 | 2_4:+179677 | Msa0307280:CDS |
| GATGCCACTGCTGATGAAGA+AGG | 0.543436 | 2_4:+181166 | Msa0307280:CDS |
| GCCGGTAACAATTGGGCGAA+AGG | 0.544358 | 2_4:+179299 | Msa0307280:CDS |
| AGTGTTCGCACTGGTCCTTA+CGG | 0.544816 | 2_4:+179233 | Msa0307280:CDS |
| CACGGTATTGCTGAGAGCCA+CGG | 0.544884 | 2_4:-180712 | None:intergenic |
| GAGGGGATGTATGTACGAAA+AGG | 0.545167 | 2_4:-178590 | None:intergenic |
| ATGTTCAAGGAGGACAATGC+GGG | 0.546684 | 2_4:+179027 | Msa0307280:CDS |
| TTGAAGCAAAGAAATTAGGA+TGG | 0.548188 | 2_4:-178672 | None:intergenic |
| AATTTACTGCTATGTTTAGG+AGG | 0.549323 | 2_4:+181038 | Msa0307280:CDS |
| GGTAGTGGGAATTTAGTACA+TGG | 0.551971 | 2_4:+181404 | Msa0307280:three_prime_UTR |
| TGGTGAAGGCATGGATGAGA+TGG | 0.552982 | 2_4:+181084 | Msa0307280:CDS |
| ACGGTATTGCTGAGAGCCAC+GGG | 0.554335 | 2_4:-180711 | None:intergenic |
| ATATGAGGACGAAGAGGACG+AGG | 0.557142 | 2_4:+181192 | Msa0307280:CDS |
| CCATTTCGTCATTCAACACA+AGG | 0.559646 | 2_4:+178638 | Msa0307280:five_prime_UTR |
| GTGAGGTAGCGACCATGCCT+AGG | 0.560055 | 2_4:-180800 | None:intergenic |
| TTCTCCTTCTTCATCAGCAG+TGG | 0.564039 | 2_4:-181170 | None:intergenic |
| CAATTCAGGAAATGTTTAGG+AGG | 0.566101 | 2_4:+181005 | Msa0307280:CDS |
| TGAGAAGTGATGTGGATCGT+TGG | 0.566606 | 2_4:-178764 | None:intergenic |
| ACCATGAAGAAGTGCAGACG+AGG | 0.568203 | 2_4:-180668 | None:intergenic |
| GCAAAGAAATTAGGATGGGA+CGG | 0.568809 | 2_4:-178667 | None:intergenic |
| AAGTGATGTGGATCGTTGGA+TGG | 0.569149 | 2_4:-178760 | None:intergenic |
| TGCTCCTCGAGGTCTCTCCA+TGG | 0.570432 | 2_4:+180955 | Msa0307280:CDS |
| GTATCAGAAACCTTCGGTGA+AGG | 0.572045 | 2_4:-179609 | None:intergenic |
| GTTGATTTCGAAGATTAGAG+AGG | 0.576526 | 2_4:+179548 | Msa0307280:CDS |
| TGAAGCAAAGAAATTAGGAT+GGG | 0.579190 | 2_4:-178671 | None:intergenic |
| TGGGATCCACTCAACAAAGT+AGG | 0.583322 | 2_4:-180903 | None:intergenic |
| ACAACAGTATCAGAAACCTT+CGG | 0.584973 | 2_4:-179615 | None:intergenic |
| TTGGTACACTGGTGAAGGCA+TGG | 0.586360 | 2_4:+181075 | Msa0307280:CDS |
| TGAGTTACCAATAAAGGTGG+AGG | 0.588019 | 2_4:-180978 | None:intergenic |
| GAGCACGGCATAGATCCAAC+CGG | 0.589745 | 2_4:+179089 | Msa0307280:CDS |
| ACAACAGAGCGAAGGGTAGT+GGG | 0.592753 | 2_4:+181390 | Msa0307280:three_prime_UTR |
| GAAGTAGTTTGCGACGAGCA+CGG | 0.593265 | 2_4:+179074 | Msa0307280:CDS |
| ACAACGAAGCCTCCTGTGGA+AGG | 0.594540 | 2_4:+179162 | Msa0307280:CDS |
| GTGTGTCATTCATTGGGAGG+AGG | 0.596369 | 2_4:+179501 | Msa0307280:CDS |
| ACTGCTTCTGCCATGTTCAG+GGG | 0.596534 | 2_4:+180821 | Msa0307280:CDS |
| GGACAATGCGGGAACCAGAT+CGG | 0.597537 | 2_4:+179038 | Msa0307280:CDS |
| TTTGCTCCTCTCACATCCCG+TGG | 0.599145 | 2_4:+180695 | Msa0307280:CDS |
| TTGATCTCAGCAACCATGAG+TGG | 0.599833 | 2_4:+180569 | Msa0307280:CDS |
| CATCAATCTCCACCGTCCAA+AGG | 0.599873 | 2_4:+178734 | Msa0307280:five_prime_UTR |
| TCATGGTTGCTGAGATCAAG+TGG | 0.601262 | 2_4:-180565 | None:intergenic |
| GCGTGGAACAAACCTTCCAC+AGG | 0.601663 | 2_4:-179174 | None:intergenic |
| TAAGATGAGCACCAAAGAGG+TGG | 0.605176 | 2_4:+180844 | Msa0307280:CDS |
| GGTTGAGTTACCAATAAAGG+TGG | 0.607360 | 2_4:-180981 | None:intergenic |
| CAATTTGGACAACAGAGCGA+AGG | 0.608406 | 2_4:+181382 | Msa0307280:three_prime_UTR |
| AATTCAGGAAATGTTTAGGA+GGG | 0.609115 | 2_4:+181006 | Msa0307280:CDS |
| ACATACAGAAACAAATAGAT+GGG | 0.609432 | 2_4:-181444 | None:intergenic |
| ACAATGGACAGTGTTCGCAC+TGG | 0.609664 | 2_4:+179224 | Msa0307280:CDS |
| ACAGCAAGTCACTCCACTCA+TGG | 0.610966 | 2_4:-180582 | None:intergenic |
| GCTCATCTTACCCCTGAACA+TGG | 0.612907 | 2_4:-180831 | None:intergenic |
| AGCGAGATAGAGTGAAAATG+TGG | 0.613930 | 2_4:-178817 | None:intergenic |
| TGGATGGGAAAATGGTTGAG+CGG | 0.615130 | 2_4:-178849 | None:intergenic |
| AGGCTCCAAGTCCATGAGGA+TGG | 0.616165 | 2_4:-179198 | None:intergenic |
| TCAAAACAAGCTAATTACAA+AGG | 0.616303 | 2_4:-181317 | None:intergenic |
| AGAACTCACCCAGCAGATGT+GGG | 0.617381 | 2_4:+180748 | Msa0307280:CDS |
| TCACTTCTCATCACAAAGCG+AGG | 0.619680 | 2_4:+178777 | Msa0307280:five_prime_UTR |
| TGTGCTGCTGATCCTAGGCA+TGG | 0.620259 | 2_4:+180788 | Msa0307280:CDS |
| GGATGGAAACCTTTGGACGG+TGG | 0.629305 | 2_4:-178743 | None:intergenic |
| GCGAAAGGACATTATACTGA+AGG | 0.631149 | 2_4:+179314 | Msa0307280:CDS |
| GGACGGAAGATCTGACCGTA+AGG | 0.631185 | 2_4:-179248 | None:intergenic |
| GTTTGTGACATTGCTCCTCG+AGG | 0.633730 | 2_4:+180944 | Msa0307280:CDS |
| CACTTCTCATCACAAAGCGA+GGG | 0.636087 | 2_4:+178778 | Msa0307280:five_prime_UTR |
| TACTACAACGAAGCCTCCTG+TGG | 0.636492 | 2_4:+179158 | Msa0307280:CDS |
| AAGTCCATGAGGATGGCGCG+TGG | 0.636612 | 2_4:-179191 | None:intergenic |
| AATTTGGACAACAGAGCGAA+GGG | 0.638625 | 2_4:+181383 | Msa0307280:three_prime_UTR |
| TGAGAGCCACGGGATGTGAG+AGG | 0.640513 | 2_4:-180701 | None:intergenic |
| TGGAACAAACCTTCCACAGG+AGG | 0.640659 | 2_4:-179171 | None:intergenic |
| CTTTGTGATGAGAAGTGATG+TGG | 0.645586 | 2_4:-178772 | None:intergenic |
| GTGTATGGTTCTTGATAATG+AGG | 0.647671 | 2_4:+179692 | Msa0307280:CDS |
| AGGAGAATATGAGGACGAAG+AGG | 0.649551 | 2_4:+181186 | Msa0307280:CDS |
| CATGTTCAAGGAGGACAATG+CGG | 0.653004 | 2_4:+179026 | Msa0307280:CDS |
| GAGGCCATGGAGAGACCTCG+AGG | 0.661607 | 2_4:-180959 | None:intergenic |
| GATCAGAGTTGAGTTGACCA+GGG | 0.663540 | 2_4:-180613 | None:intergenic |
| GTTGGATGGAAACCTTTGGA+CGG | 0.663569 | 2_4:-178746 | None:intergenic |
| CCATGAAGAAGTGCAGACGA+GGG | 0.668664 | 2_4:-180667 | None:intergenic |
| GGGTAAGATGAGCACCAAAG+AGG | 0.672077 | 2_4:+180841 | Msa0307280:CDS |
| CGAAGACGAAGTTATCAGGA+CGG | 0.676420 | 2_4:-179265 | None:intergenic |
| GAAATTCTTCATGTTCAAGG+AGG | 0.679770 | 2_4:+179017 | Msa0307280:CDS |
| GTTCTGGAACAGTCAATGCA+CGG | 0.686386 | 2_4:-180730 | None:intergenic |
| TACCAGGCTCCAAGTCCATG+AGG | 0.693763 | 2_4:-179202 | None:intergenic |
| GATCCAACCGGAAGATACGT+CGG | 0.698972 | 2_4:+179101 | Msa0307280:CDS |
| ATCACCAATAGATATATGTG+CGG | 0.704907 | 2_4:-181629 | None:intergenic |
| TGAACATGGCAGAAGCAGTG+AGG | 0.715259 | 2_4:-180817 | None:intergenic |
| CATTTCGTCATTCAACACAA+GGG | 0.727551 | 2_4:+178639 | Msa0307280:five_prime_UTR |
| ACTGCTGGTACTCAGACACG+AGG | 0.785475 | 2_4:-181138 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTATTTAAATTTTGATTT+GGG | - | chr2_4:178710-178729 | None:intergenic | 10.0% |
| !!! | TGATTATTTAAATTTTGATT+TGG | - | chr2_4:178711-178730 | None:intergenic | 10.0% |
| !! | AAAACATAACAACATTAAAA+TGG | - | chr2_4:180111-180130 | None:intergenic | 15.0% |
| !! | AAATTAGTCAGATTAAATTT+AGG | - | chr2_4:180433-180452 | None:intergenic | 15.0% |
| !!! | ATAAAGAATCAAGAATGTTT+TGG | - | chr2_4:178559-178578 | None:intergenic | 20.0% |
| !! | AAAATGTGGACAAAATATAT+TGG | - | chr2_4:178806-178825 | None:intergenic | 20.0% |
| !!! | TGTGATTTTGTGATTTTTTT+AGG | + | chr2_4:179471-179490 | Msa0307280:intron | 20.0% |
| !!! | GTGATTTTGTGATTTTTTTA+GGG | + | chr2_4:179472-179491 | Msa0307280:intron | 20.0% |
| !! | TTAAACTTATATTTACCCTT+TGG | + | chr2_4:180226-180245 | Msa0307280:intron | 20.0% |
| !! | TAAACTTATATTTACCCTTT+GGG | + | chr2_4:180227-180246 | Msa0307280:intron | 20.0% |
| !!! | ATGTTAATGATTCATTTTTC+TGG | + | chr2_4:180335-180354 | Msa0307280:intron | 20.0% |
| !! | AATTTGATTGTTCACAAATT+GGG | + | chr2_4:180467-180486 | Msa0307280:intron | 20.0% |
| ! | GTTATTGAAGCAAAGAAATT+AGG | - | chr2_4:178679-178698 | None:intergenic | 25.0% |
| ! | TGAAAATCTTGATTCTGTTA+TGG | + | chr2_4:179428-179447 | Msa0307280:intron | 25.0% |
| !! | AATTAGTTATTGGTTAGTTG+TGG | + | chr2_4:179871-179890 | Msa0307280:intron | 25.0% |
| ! | TTGTGGTAATTATTGAATAG+TGG | + | chr2_4:179888-179907 | Msa0307280:intron | 25.0% |
| !!! | GTCAGATTAGTTTTCTATTT+TGG | + | chr2_4:179982-180001 | Msa0307280:intron | 25.0% |
| ! | TTTAGAAATTAGATCCCAAA+GGG | - | chr2_4:180244-180263 | None:intergenic | 25.0% |
| ! | ATTTAGAAATTAGATCCCAA+AGG | - | chr2_4:180245-180264 | None:intergenic | 25.0% |
| !!! | TCATTTTTCTGGTTCAATTA+TGG | + | chr2_4:180346-180365 | Msa0307280:intron | 25.0% |
| !! | TTTTCTCATTGAACACTTTT+CGG | + | chr2_4:180395-180414 | Msa0307280:intron | 25.0% |
| ! | GAATTTGATTGTTCACAAAT+TGG | + | chr2_4:180466-180485 | Msa0307280:intron | 25.0% |
| ! | CACTTGATTTAACATTGTTT+GGG | - | chr2_4:180925-180944 | None:intergenic | 25.0% |
| ! | ACACTTGATTTAACATTGTT+TGG | - | chr2_4:180926-180945 | None:intergenic | 25.0% |
| ! | TCAAAACAAGCTAATTACAA+AGG | - | chr2_4:181320-181339 | None:intergenic | 25.0% |
| !!! | TTTGTAATTAGCTTGTTTTG+AGG | + | chr2_4:181319-181338 | Msa0307280:three_prime_UTR | 25.0% |
| !!! | TTGTAATTAGCTTGTTTTGA+GGG | + | chr2_4:181320-181339 | Msa0307280:three_prime_UTR | 25.0% |
| ! | ACATACAGAAACAAATAGAT+GGG | - | chr2_4:181447-181466 | None:intergenic | 25.0% |
| ! | AACATACAGAAACAAATAGA+TGG | - | chr2_4:181448-181467 | None:intergenic | 25.0% |
| !!! | ATCTATTTGTTTCTGTATGT+TGG | + | chr2_4:181447-181466 | Msa0307280:three_prime_UTR | 25.0% |
| !! | TTGTTTCTTATATCTGCTAT+TGG | + | chr2_4:181479-181498 | Msa0307280:three_prime_UTR | 25.0% |
| ! | ATAGGAATGACAAACTATTA+AGG | - | chr2_4:181514-181533 | None:intergenic | 25.0% |
| ! | ATGTGAAAAAAGTAATGCAT+AGG | - | chr2_4:181532-181551 | None:intergenic | 25.0% |
| !!! | ATGCATTACTTTTTTCACAT+TGG | + | chr2_4:181532-181551 | Msa0307280:three_prime_UTR | 25.0% |
| ! | TTTTTATTGAAGAGGTGAGA+GGG | - | chr2_4:178611-178630 | None:intergenic | 30.0% |
| ! | ATTTTTATTGAAGAGGTGAG+AGG | - | chr2_4:178612-178631 | None:intergenic | 30.0% |
| CACCTCTTCAATAAAAATGA+AGG | + | chr2_4:178614-178633 | Msa0307280:five_prime_UTR | 30.0% | |
| !! | GTCCTTCATTTTTATTGAAG+AGG | - | chr2_4:178619-178638 | None:intergenic | 30.0% |
| TGAAGCAAAGAAATTAGGAT+GGG | - | chr2_4:178674-178693 | None:intergenic | 30.0% | |
| TTGAAGCAAAGAAATTAGGA+TGG | - | chr2_4:178675-178694 | None:intergenic | 30.0% | |
| GAACAATTTGAACACTGAAA+CGG | - | chr2_4:178978-178997 | None:intergenic | 30.0% | |
| AGAGAAATTCTTCATGTTCA+AGG | + | chr2_4:179014-179033 | Msa0307280:CDS | 30.0% | |
| AAATCTTGATTCTGTTATGG+CGG | + | chr2_4:179431-179450 | Msa0307280:intron | 30.0% | |
| !!! | TGTGATTTTTTTAGGGTTTC+AGG | + | chr2_4:179479-179498 | Msa0307280:intron | 30.0% |
| ACAGAAAGAGTAGCATTATA+AGG | - | chr2_4:179645-179664 | None:intergenic | 30.0% | |
| ! | TTTTTCGTTGTTCATCACTA+GGG | + | chr2_4:179799-179818 | Msa0307280:intron | 30.0% |
| TTTGATGCGCAATTAGTTAT+TGG | + | chr2_4:179861-179880 | Msa0307280:intron | 30.0% | |
| !! | AAGCATTGAACAATTGCAAT+AGG | - | chr2_4:180269-180288 | None:intergenic | 30.0% |
| TGGTGATTCTTAACTACAAA+TGG | + | chr2_4:180366-180385 | Msa0307280:intron | 30.0% | |
| ! | CAATCACACATTTTCAGTAA+TGG | - | chr2_4:180522-180541 | None:intergenic | 30.0% |
| AATTCAGGAAATGTTTAGGA+GGG | + | chr2_4:181006-181025 | Msa0307280:CDS | 30.0% | |
| AGCAATTTACTGCTATGTTT+AGG | + | chr2_4:181035-181054 | Msa0307280:CDS | 30.0% | |
| AATTTACTGCTATGTTTAGG+AGG | + | chr2_4:181038-181057 | Msa0307280:CDS | 30.0% | |
| AAGCTAATTACAAAGGATAG+AGG | - | chr2_4:181313-181332 | None:intergenic | 30.0% | |
| TAAACCGCACATATATCTAT+TGG | + | chr2_4:181625-181644 | Msa0307280:three_prime_UTR | 30.0% | |
| ATCACCAATAGATATATGTG+CGG | - | chr2_4:181632-181651 | None:intergenic | 30.0% | |
| !! | AATCAAGAATGTTTTGGACG+TGG | - | chr2_4:178553-178572 | None:intergenic | 35.0% |
| ! | TTTTATTGAAGAGGTGAGAG+GGG | - | chr2_4:178610-178629 | None:intergenic | 35.0% |
| CATTTCGTCATTCAACACAA+GGG | + | chr2_4:178639-178658 | Msa0307280:five_prime_UTR | 35.0% | |
| GAAATTCTTCATGTTCAAGG+AGG | + | chr2_4:179017-179036 | Msa0307280:CDS | 35.0% | |
| GAGAATTGTGATTGTCTTCA+AGG | + | chr2_4:179383-179402 | Msa0307280:CDS | 35.0% | |
| ! | TTTCAGGTGTGTCATTCATT+GGG | + | chr2_4:179495-179514 | Msa0307280:CDS | 35.0% |
| ! | GTTGATTTCGAAGATTAGAG+AGG | + | chr2_4:179548-179567 | Msa0307280:CDS | 35.0% |
| TTAGAGAGGAATATCCTGAT+AGG | + | chr2_4:179562-179581 | Msa0307280:CDS | 35.0% | |
| ! | TAGGATGATGTTGACGTTTT+CGG | + | chr2_4:179581-179600 | Msa0307280:CDS | 35.0% |
| ACAACAGTATCAGAAACCTT+CGG | - | chr2_4:179618-179637 | None:intergenic | 35.0% | |
| TACTCTTTCTGTTCATCAGT+TGG | + | chr2_4:179653-179672 | Msa0307280:CDS | 35.0% | |
| AGAAAATGCTGATGAGTGTA+TGG | + | chr2_4:179677-179696 | Msa0307280:CDS | 35.0% | |
| !! | GTGTATGGTTCTTGATAATG+AGG | + | chr2_4:179692-179711 | Msa0307280:CDS | 35.0% |
| AGAGAAAAATACTCACAGCT+AGG | - | chr2_4:179759-179778 | None:intergenic | 35.0% | |
| !! | CTTTTTCGTTGTTCATCACT+AGG | + | chr2_4:179798-179817 | Msa0307280:intron | 35.0% |
| ! | TGACTGATTCTAGATGTTCA+AGG | + | chr2_4:180060-180079 | Msa0307280:intron | 35.0% |
| ATGTACTCAGTTTACTGATC+TGG | + | chr2_4:180154-180173 | Msa0307280:intron | 35.0% | |
| ATGAATGCATCATGTGACTA+TGG | + | chr2_4:180305-180324 | Msa0307280:intron | 35.0% | |
| TGAGGTTGAGTTACCAATAA+AGG | - | chr2_4:180987-181006 | None:intergenic | 35.0% | |
| CCTAAACATTTCCTGAATTG+AGG | - | chr2_4:181005-181024 | None:intergenic | 35.0% | |
| CCTCAATTCAGGAAATGTTT+AGG | + | chr2_4:181002-181021 | Msa0307280:CDS | 35.0% | |
| CAATTCAGGAAATGTTTAGG+AGG | + | chr2_4:181005-181024 | Msa0307280:CDS | 35.0% | |
| TGATGAAGAAGGAGAATATG+AGG | + | chr2_4:181177-181196 | Msa0307280:CDS | 35.0% | |
| CCTTGTGTTGAATGACGAAA+TGG | - | chr2_4:178641-178660 | None:intergenic | 40.0% | |
| CCATTTCGTCATTCAACACA+AGG | + | chr2_4:178638-178657 | Msa0307280:five_prime_UTR | 40.0% | |
| GCAAAGAAATTAGGATGGGA+CGG | - | chr2_4:178670-178689 | None:intergenic | 40.0% | |
| CTTTGTGATGAGAAGTGATG+TGG | - | chr2_4:178775-178794 | None:intergenic | 40.0% | |
| AGCGAGATAGAGTGAAAATG+TGG | - | chr2_4:178820-178839 | None:intergenic | 40.0% | |
| CTCATCTTCATCACTATCAC+AGG | + | chr2_4:178889-178908 | Msa0307280:five_prime_UTR | 40.0% | |
| ! | ACCAGATCGGTTCAAAATTC+TGG | + | chr2_4:179051-179070 | Msa0307280:CDS | 40.0% |
| ! | CCAGATCGGTTCAAAATTCT+GGG | + | chr2_4:179052-179071 | Msa0307280:CDS | 40.0% |
| GCGAAAGGACATTATACTGA+AGG | + | chr2_4:179314-179333 | Msa0307280:CDS | 40.0% | |
| TCTCGATGTTGTTCGTAAAG+AGG | + | chr2_4:179358-179377 | Msa0307280:CDS | 40.0% | |
| ! | GTTTCAGGTGTGTCATTCAT+TGG | + | chr2_4:179494-179513 | Msa0307280:CDS | 40.0% |
| AACGTCAACATCATCCTATC+AGG | - | chr2_4:179579-179598 | None:intergenic | 40.0% | |
| CGCTTTATGATATCTGCTTC+AGG | + | chr2_4:179715-179734 | Msa0307280:CDS | 40.0% | |
| AGTTTACTGATCTGGTCAGT+GGG | + | chr2_4:180162-180181 | Msa0307280:intron | 40.0% | |
| AGTAGGAAGAGTTCTTGTTC+TGG | - | chr2_4:180889-180908 | None:intergenic | 40.0% | |
| ACTCTTCCTACTTTGTTGAG+TGG | + | chr2_4:180897-180916 | Msa0307280:CDS | 40.0% | |
| TGAGTTACCAATAAAGGTGG+AGG | - | chr2_4:180981-181000 | None:intergenic | 40.0% | |
| GGTTGAGTTACCAATAAAGG+TGG | - | chr2_4:180984-181003 | None:intergenic | 40.0% | |
| TGGTAACTCAACCTCAATTC+AGG | + | chr2_4:180991-181010 | Msa0307280:CDS | 40.0% | |
| TACTGCTATGTTTAGGAGGA+AGG | + | chr2_4:181042-181061 | Msa0307280:CDS | 40.0% | |
| ! | TTTTAGTAACGAGCTGGATG+TGG | + | chr2_4:181344-181363 | Msa0307280:three_prime_UTR | 40.0% |
| AGAGAATGGAGATCCCAATT+TGG | + | chr2_4:181367-181386 | Msa0307280:three_prime_UTR | 40.0% | |
| TTCGCTCTGTTGTCCAAATT+GGG | - | chr2_4:181383-181402 | None:intergenic | 40.0% | |
| AATTTGGACAACAGAGCGAA+GGG | + | chr2_4:181383-181402 | Msa0307280:three_prime_UTR | 40.0% | |
| !! | GGTAGTGGGAATTTAGTACA+TGG | + | chr2_4:181404-181423 | Msa0307280:three_prime_UTR | 40.0% |
| ATGTGCGGTTTAACGTTGTT+CGG | - | chr2_4:181617-181636 | None:intergenic | 40.0% | |
| GAGGGGATGTATGTACGAAA+AGG | - | chr2_4:178593-178612 | None:intergenic | 45.0% | |
| GTTGGATGGAAACCTTTGGA+CGG | - | chr2_4:178749-178768 | None:intergenic | 45.0% | |
| GATCGTTGGATGGAAACCTT+TGG | - | chr2_4:178753-178772 | None:intergenic | 45.0% | |
| AAGTGATGTGGATCGTTGGA+TGG | - | chr2_4:178763-178782 | None:intergenic | 45.0% | |
| TGAGAAGTGATGTGGATCGT+TGG | - | chr2_4:178767-178786 | None:intergenic | 45.0% | |
| TCACTTCTCATCACAAAGCG+AGG | + | chr2_4:178777-178796 | Msa0307280:five_prime_UTR | 45.0% | |
| CACTTCTCATCACAAAGCGA+GGG | + | chr2_4:178778-178797 | Msa0307280:five_prime_UTR | 45.0% | |
| TGGATGGGAAAATGGTTGAG+CGG | - | chr2_4:178852-178871 | None:intergenic | 45.0% | |
| GACGAGTTTGGATGGGAAAA+TGG | - | chr2_4:178860-178879 | None:intergenic | 45.0% | |
| AGAGAGTGACGAGTTTGGAT+GGG | - | chr2_4:178867-178886 | None:intergenic | 45.0% | |
| CATGTTCAAGGAGGACAATG+CGG | + | chr2_4:179026-179045 | Msa0307280:CDS | 45.0% | |
| ATGTTCAAGGAGGACAATGC+GGG | + | chr2_4:179027-179046 | Msa0307280:CDS | 45.0% | |
| ! | CCCAGAATTTTGAACCGATC+TGG | - | chr2_4:179055-179074 | None:intergenic | 45.0% |
| TGAGTTTCCGACGTATCTTC+CGG | - | chr2_4:179111-179130 | None:intergenic | 45.0% | |
| CGAAGACGAAGTTATCAGGA+CGG | - | chr2_4:179268-179287 | None:intergenic | 45.0% | |
| CGTCCTGATAACTTCGTCTT+CGG | + | chr2_4:179266-179285 | Msa0307280:CDS | 45.0% | |
| TGACCGAAGACGAAGTTATC+AGG | - | chr2_4:179272-179291 | None:intergenic | 45.0% | |
| TCCTTTCGCCCAATTGTTAC+CGG | - | chr2_4:179303-179322 | None:intergenic | 45.0% | |
| GTATCAGAAACCTTCGGTGA+AGG | - | chr2_4:179612-179631 | None:intergenic | 45.0% | |
| CAGTTTACTGATCTGGTCAG+TGG | + | chr2_4:180161-180180 | Msa0307280:intron | 45.0% | |
| TGGCAAACAGCATCAACTAC+AGG | - | chr2_4:180502-180521 | None:intergenic | 45.0% | |
| ! | GTGTGATTGTTTGCTGCAGT+TGG | + | chr2_4:180533-180552 | Msa0307280:intron | 45.0% |
| TCATGGTTGCTGAGATCAAG+TGG | - | chr2_4:180568-180587 | None:intergenic | 45.0% | |
| TTGATCTCAGCAACCATGAG+TGG | + | chr2_4:180569-180588 | Msa0307280:CDS | 45.0% | |
| !! | GATCAGAGTTGAGTTGACCA+GGG | - | chr2_4:180616-180635 | None:intergenic | 45.0% |
| !! | AGATCAGAGTTGAGTTGACC+AGG | - | chr2_4:180617-180636 | None:intergenic | 45.0% |
| GTCAACTCAACTCTGATCTC+CGG | + | chr2_4:180618-180637 | Msa0307280:CDS | 45.0% | |
| TGAGATTCACAGCCAGTTTC+CGG | - | chr2_4:180640-180659 | None:intergenic | 45.0% | |
| !! | GTTCTGGAACAGTCAATGCA+CGG | - | chr2_4:180733-180752 | None:intergenic | 45.0% |
| AGCAGCACACATCATGTTCT+TGG | - | chr2_4:180777-180796 | None:intergenic | 45.0% | |
| TAAGATGAGCACCAAAGAGG+TGG | + | chr2_4:180844-180863 | Msa0307280:CDS | 45.0% | |
| CATTTGCTCATCCACCTCTT+TGG | - | chr2_4:180858-180877 | None:intergenic | 45.0% | |
| TGGGATCCACTCAACAAAGT+AGG | - | chr2_4:180906-180925 | None:intergenic | 45.0% | |
| ! | GCTTTCTTGCATTGGTACAC+TGG | + | chr2_4:181064-181083 | Msa0307280:CDS | 45.0% |
| ! | TTGCATTGGTACACTGGTGA+AGG | + | chr2_4:181070-181089 | Msa0307280:CDS | 45.0% |
| TTCTCCTTCTTCATCAGCAG+TGG | - | chr2_4:181173-181192 | None:intergenic | 45.0% | |
| AGGAGAATATGAGGACGAAG+AGG | + | chr2_4:181186-181205 | Msa0307280:CDS | 45.0% | |
| !! | GAGGGATTTTAGTAACGAGC+TGG | + | chr2_4:181338-181357 | Msa0307280:three_prime_UTR | 45.0% |
| CTTCGCTCTGTTGTCCAAAT+TGG | - | chr2_4:181384-181403 | None:intergenic | 45.0% | |
| CAATTTGGACAACAGAGCGA+AGG | + | chr2_4:181382-181401 | Msa0307280:three_prime_UTR | 45.0% | |
| CATCAATCTCCACCGTCCAA+AGG | + | chr2_4:178734-178753 | Msa0307280:five_prime_UTR | 50.0% | |
| GGATGGGAAAATGGTTGAGC+GGG | - | chr2_4:178851-178870 | None:intergenic | 50.0% | |
| GAGAGAGTGACGAGTTTGGA+TGG | - | chr2_4:178868-178887 | None:intergenic | 50.0% | |
| GAGTGAGAGAGTGACGAGTT+TGG | - | chr2_4:178872-178891 | None:intergenic | 50.0% | |
| ! | GAAGTAGTTTGCGACGAGCA+CGG | + | chr2_4:179074-179093 | Msa0307280:CDS | 50.0% |
| GATCCAACCGGAAGATACGT+CGG | + | chr2_4:179101-179120 | Msa0307280:CDS | 50.0% | |
| TTTCCGACGTATCTTCCGGT+TGG | - | chr2_4:179107-179126 | None:intergenic | 50.0% | |
| TACTACAACGAAGCCTCCTG+TGG | + | chr2_4:179158-179177 | Msa0307280:CDS | 50.0% | |
| TGGAACAAACCTTCCACAGG+AGG | - | chr2_4:179174-179193 | None:intergenic | 50.0% | |
| CGAACACTGTCCATTGTACC+AGG | - | chr2_4:179221-179240 | None:intergenic | 50.0% | |
| ACAATGGACAGTGTTCGCAC+TGG | + | chr2_4:179224-179243 | Msa0307280:CDS | 50.0% | |
| ! | AGTGTTCGCACTGGTCCTTA+CGG | + | chr2_4:179233-179252 | Msa0307280:CDS | 50.0% |
| AACTTCGTCTTCGGTCAGTC+CGG | + | chr2_4:179275-179294 | Msa0307280:CDS | 50.0% | |
| ! | CAGGTGTGTCATTCATTGGG+AGG | + | chr2_4:179498-179517 | Msa0307280:CDS | 50.0% |
| ! | GTGTGTCATTCATTGGGAGG+AGG | + | chr2_4:179501-179520 | Msa0307280:CDS | 50.0% |
| CATTCATTGGGAGGAGGAAC+TGG | + | chr2_4:179507-179526 | Msa0307280:CDS | 50.0% | |
| AGGAGGAACTGGATCTGGAA+TGG | + | chr2_4:179518-179537 | Msa0307280:CDS | 50.0% | |
| ! | GGAGGAACTGGATCTGGAAT+GGG | + | chr2_4:179519-179538 | Msa0307280:CDS | 50.0% |
| !! | TTCGGTGTTTCCTTCACCGA+AGG | + | chr2_4:179599-179618 | Msa0307280:CDS | 50.0% |
| ACAGCAAGTCACTCCACTCA+TGG | - | chr2_4:180585-180604 | None:intergenic | 50.0% | |
| !! | ACTTGCTGTCTTCGTTTCCC+TGG | + | chr2_4:180596-180615 | Msa0307280:CDS | 50.0% |
| CAACTCTGATCTCCGGAAAC+TGG | + | chr2_4:180625-180644 | Msa0307280:CDS | 50.0% | |
| ! | AGAAGTGCAGACGAGGGAAT+GGG | - | chr2_4:180664-180683 | None:intergenic | 50.0% |
| ! | AAGAAGTGCAGACGAGGGAA+TGG | - | chr2_4:180665-180684 | None:intergenic | 50.0% |
| ! | CCATGAAGAAGTGCAGACGA+GGG | - | chr2_4:180670-180689 | None:intergenic | 50.0% |
| ! | ACCATGAAGAAGTGCAGACG+AGG | - | chr2_4:180671-180690 | None:intergenic | 50.0% |
| CGTCTGCACTTCTTCATGGT+CGG | + | chr2_4:180671-180690 | Msa0307280:CDS | 50.0% | |
| AGAACTCACCCAGCAGATGT+GGG | + | chr2_4:180748-180767 | Msa0307280:CDS | 50.0% | |
| CTTGGAATCCCACATCTGCT+GGG | - | chr2_4:180759-180778 | None:intergenic | 50.0% | |
| TCTTGGAATCCCACATCTGC+TGG | - | chr2_4:180760-180779 | None:intergenic | 50.0% | |
| ! | TGATGTGTGCTGCTGATCCT+AGG | + | chr2_4:180783-180802 | Msa0307280:CDS | 50.0% |
| TGAACATGGCAGAAGCAGTG+AGG | - | chr2_4:180820-180839 | None:intergenic | 50.0% | |
| TCACTGCTTCTGCCATGTTC+AGG | + | chr2_4:180819-180838 | Msa0307280:CDS | 50.0% | |
| CACTGCTTCTGCCATGTTCA+GGG | + | chr2_4:180820-180839 | Msa0307280:CDS | 50.0% | |
| ACTGCTTCTGCCATGTTCAG+GGG | + | chr2_4:180821-180840 | Msa0307280:CDS | 50.0% | |
| GCTCATCTTACCCCTGAACA+TGG | - | chr2_4:180834-180853 | None:intergenic | 50.0% | |
| GGGTAAGATGAGCACCAAAG+AGG | + | chr2_4:180841-180860 | Msa0307280:CDS | 50.0% | |
| GTTTGTGACATTGCTCCTCG+AGG | + | chr2_4:180944-180963 | Msa0307280:CDS | 50.0% | |
| TCCATGGCCTCCACCTTTAT+TGG | + | chr2_4:180971-180990 | Msa0307280:CDS | 50.0% | |
| ACCAATAAAGGTGGAGGCCA+TGG | - | chr2_4:180975-180994 | None:intergenic | 50.0% | |
| GGAGGAAGGCTTTCTTGCAT+TGG | + | chr2_4:181056-181075 | Msa0307280:CDS | 50.0% | |
| TTGGTACACTGGTGAAGGCA+TGG | + | chr2_4:181075-181094 | Msa0307280:CDS | 50.0% | |
| ! | TGGTGAAGGCATGGATGAGA+TGG | + | chr2_4:181084-181103 | Msa0307280:CDS | 50.0% |
| GATGCCACTGCTGATGAAGA+AGG | + | chr2_4:181166-181185 | Msa0307280:CDS | 50.0% | |
| ATATGAGGACGAAGAGGACG+AGG | + | chr2_4:181192-181211 | Msa0307280:CDS | 50.0% | |
| ACAACAGAGCGAAGGGTAGT+GGG | + | chr2_4:181390-181409 | Msa0307280:three_prime_UTR | 50.0% | |
| GGATGGAAACCTTTGGACGG+TGG | - | chr2_4:178746-178765 | None:intergenic | 55.0% | |
| GGACAATGCGGGAACCAGAT+CGG | + | chr2_4:179038-179057 | Msa0307280:CDS | 55.0% | |
| GAGCACGGCATAGATCCAAC+CGG | + | chr2_4:179089-179108 | Msa0307280:CDS | 55.0% | |
| ACAACGAAGCCTCCTGTGGA+AGG | + | chr2_4:179162-179181 | Msa0307280:CDS | 55.0% | |
| GCGTGGAACAAACCTTCCAC+AGG | - | chr2_4:179177-179196 | None:intergenic | 55.0% | |
| AGGCTCCAAGTCCATGAGGA+TGG | - | chr2_4:179201-179220 | None:intergenic | 55.0% | |
| ATCCTCATGGACTTGGAGCC+TGG | + | chr2_4:179200-179219 | Msa0307280:CDS | 55.0% | |
| TACCAGGCTCCAAGTCCATG+AGG | - | chr2_4:179205-179224 | None:intergenic | 55.0% | |
| GGACTTGGAGCCTGGTACAA+TGG | + | chr2_4:179208-179227 | Msa0307280:CDS | 55.0% | |
| GGACGGAAGATCTGACCGTA+AGG | - | chr2_4:179251-179270 | None:intergenic | 55.0% | |
| !! | AGTCCGGTGCCGGTAACAAT+TGG | + | chr2_4:179291-179310 | Msa0307280:CDS | 55.0% |
| !! | GTCCGGTGCCGGTAACAATT+GGG | + | chr2_4:179292-179311 | Msa0307280:CDS | 55.0% |
| GCCGGTAACAATTGGGCGAA+AGG | + | chr2_4:179299-179318 | Msa0307280:CDS | 55.0% | |
| TTGGGAGGAGGAACTGGATC+TGG | + | chr2_4:179513-179532 | Msa0307280:CDS | 55.0% | |
| CCCTCGTCTGCACTTCTTCA+TGG | + | chr2_4:180667-180686 | Msa0307280:CDS | 55.0% | |
| TTTGCTCCTCTCACATCCCG+TGG | + | chr2_4:180695-180714 | Msa0307280:CDS | 55.0% | |
| ACGGTATTGCTGAGAGCCAC+GGG | - | chr2_4:180714-180733 | None:intergenic | 55.0% | |
| CACGGTATTGCTGAGAGCCA+CGG | - | chr2_4:180715-180734 | None:intergenic | 55.0% | |
| CACATCTGCTGGGTGAGTTC+TGG | - | chr2_4:180749-180768 | None:intergenic | 55.0% | |
| CAGAACTCACCCAGCAGATG+TGG | + | chr2_4:180747-180766 | Msa0307280:CDS | 55.0% | |
| ! | TGTGCTGCTGATCCTAGGCA+TGG | + | chr2_4:180788-180807 | Msa0307280:CDS | 55.0% |
| ACTGCTGGTACTCAGACACG+AGG | - | chr2_4:181141-181160 | None:intergenic | 55.0% | |
| GTCTGAGTACCAGCAGTACC+AGG | + | chr2_4:181144-181163 | Msa0307280:CDS | 55.0% | |
| CTTCATCAGCAGTGGCATCC+TGG | - | chr2_4:181165-181184 | None:intergenic | 55.0% | |
| CGAGCTGGATGTGGAGAGAA+TGG | + | chr2_4:181353-181372 | Msa0307280:three_prime_UTR | 55.0% | |
| GACAACAGAGCGAAGGGTAG+TGG | + | chr2_4:181389-181408 | Msa0307280:three_prime_UTR | 55.0% | |
| TGTTCCACGCGCCATCCTCA+TGG | + | chr2_4:179187-179206 | Msa0307280:CDS | 60.0% | |
| AAGTCCATGAGGATGGCGCG+TGG | - | chr2_4:179194-179213 | None:intergenic | 60.0% | |
| ACGCGCCATCCTCATGGACT+TGG | + | chr2_4:179193-179212 | Msa0307280:CDS | 60.0% | |
| CGCCCAATTGTTACCGGCAC+CGG | - | chr2_4:179297-179316 | None:intergenic | 60.0% | |
| TGAGAGCCACGGGATGTGAG+AGG | - | chr2_4:180704-180723 | None:intergenic | 60.0% | |
| GTGAGGTAGCGACCATGCCT+AGG | - | chr2_4:180803-180822 | None:intergenic | 60.0% | |
| TGCTCCTCGAGGTCTCTCCA+TGG | + | chr2_4:180955-180974 | Msa0307280:CDS | 60.0% | |
| CAGTGGCATCCTGGTACTGC+TGG | - | chr2_4:181156-181175 | None:intergenic | 60.0% | |
| GTCTTCGGTCAGTCCGGTGC+CGG | + | chr2_4:179281-179300 | Msa0307280:CDS | 65.0% | |
| GAGGCCATGGAGAGACCTCG+AGG | - | chr2_4:180962-180981 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 178540 | 181665 | 178540 | ID=Msa0307280;Name=Msa0307280 |
| chr2_4 | mRNA | 178540 | 181665 | 178540 | ID=Msa0307280-mRNA-1;Parent=Msa0307280;Name=Msa0307280-mRNA-1;_AED=0.11;_eAED=0.11;_QI=375|1|1|1|0.66|0.5|4|428|449 |
| chr2_4 | exon | 178540 | 178910 | 178540 | ID=Msa0307280-mRNA-1:exon:28;Parent=Msa0307280-mRNA-1 |
| chr2_4 | exon | 179007 | 179404 | 179007 | ID=Msa0307280-mRNA-1:exon:29;Parent=Msa0307280-mRNA-1 |
| chr2_4 | exon | 179493 | 179762 | 179493 | ID=Msa0307280-mRNA-1:exon:30;Parent=Msa0307280-mRNA-1 |
| chr2_4 | exon | 180552 | 181665 | 180552 | ID=Msa0307280-mRNA-1:exon:31;Parent=Msa0307280-mRNA-1 |
| chr2_4 | five_prime_UTR | 178540 | 178910 | 178540 | ID=Msa0307280-mRNA-1:five_prime_utr;Parent=Msa0307280-mRNA-1 |
| chr2_4 | five_prime_UTR | 179007 | 179010 | 179007 | ID=Msa0307280-mRNA-1:five_prime_utr;Parent=Msa0307280-mRNA-1 |
| chr2_4 | CDS | 179011 | 179404 | 179011 | ID=Msa0307280-mRNA-1:cds;Parent=Msa0307280-mRNA-1 |
| chr2_4 | CDS | 179493 | 179762 | 179493 | ID=Msa0307280-mRNA-1:cds;Parent=Msa0307280-mRNA-1 |
| chr2_4 | CDS | 180552 | 181237 | 180552 | ID=Msa0307280-mRNA-1:cds;Parent=Msa0307280-mRNA-1 |
| chr2_4 | three_prime_UTR | 181238 | 181665 | 181238 | ID=Msa0307280-mRNA-1:three_prime_utr;Parent=Msa0307280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
