Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362080 | XP_003600842.2 | 96.577 | 409 | 12 | 1 | 1 | 407 | 1 | 409 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362080 | sp|Q5XF09|PT311_ARATH | 90.820 | 305 | 28 | 0 | 102 | 406 | 4 | 308 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362080 | A0A1S2YES8 | 86.683 | 413 | 39 | 7 | 1 | 406 | 1 | 404 | 0.0 | 667 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0362080 | Msa0416340 | 0.894417 | 2.514692e-75 | -8.615850e-47 |
| Msa0362080 | Msa0508560 | 0.854384 | 1.275838e-61 | -8.615850e-47 |
| Msa0362080 | Msa1383500 | 0.898333 | 5.880997e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362080 | MtrunA17_Chr3g0112981 | 98.131 | 321 | 6 | 0 | 87 | 407 | 3 | 323 | 0.0 | 633 |
| Msa0362080 | MtrunA17_Chr5g0436341 | 90.759 | 303 | 28 | 0 | 104 | 406 | 4 | 306 | 0.0 | 563 |
| Msa0362080 | MtrunA17_Chr4g0008071 | 74.662 | 296 | 75 | 0 | 109 | 404 | 13 | 308 | 4.67e-162 | 457 |
| Msa0362080 | MtrunA17_Chr8g0382081 | 72.575 | 299 | 82 | 0 | 108 | 406 | 11 | 309 | 1.45e-156 | 444 |
| Msa0362080 | MtrunA17_Chr4g0056661 | 68.243 | 296 | 94 | 0 | 112 | 407 | 56 | 351 | 5.99e-137 | 395 |
| Msa0362080 | MtrunA17_Chr3g0103641 | 82.390 | 159 | 28 | 0 | 248 | 406 | 3 | 161 | 5.21e-93 | 276 |
| Msa0362080 | MtrunA17_Chr3g0103631 | 73.457 | 162 | 43 | 0 | 100 | 261 | 1 | 162 | 1.72e-84 | 255 |
| Msa0362080 | MtrunA17_Chr3g0114581 | 33.447 | 293 | 189 | 4 | 113 | 403 | 19 | 307 | 2.32e-49 | 170 |
| Msa0362080 | MtrunA17_Chr1g0160071 | 33.106 | 293 | 190 | 4 | 113 | 403 | 18 | 306 | 8.45e-49 | 169 |
| Msa0362080 | MtrunA17_Chr2g0307091 | 32.653 | 294 | 188 | 4 | 113 | 402 | 18 | 305 | 1.29e-35 | 134 |
| Msa0362080 | MtrunA17_Chr3g0137921 | 29.392 | 296 | 195 | 5 | 113 | 402 | 22 | 309 | 1.51e-29 | 117 |
| Msa0362080 | MtrunA17_Chr7g0270591 | 31.379 | 290 | 183 | 5 | 122 | 404 | 28 | 308 | 3.61e-28 | 114 |
| Msa0362080 | MtrunA17_Chr4g0063601 | 30.769 | 299 | 159 | 8 | 113 | 402 | 18 | 277 | 2.26e-23 | 99.8 |
| Msa0362080 | MtrunA17_Chr4g0069261 | 29.617 | 287 | 192 | 4 | 122 | 404 | 24 | 304 | 4.01e-22 | 97.1 |
| Msa0362080 | MtrunA17_Chr2g0312911 | 24.662 | 296 | 203 | 6 | 122 | 407 | 24 | 309 | 6.68e-21 | 92.8 |
| Msa0362080 | MtrunA17_Chr4g0058971 | 28.094 | 299 | 199 | 8 | 112 | 403 | 88 | 377 | 1.72e-19 | 89.4 |
| Msa0362080 | MtrunA17_Chr3g0097931 | 22.741 | 321 | 235 | 8 | 88 | 403 | 89 | 401 | 1.07e-16 | 81.3 |
| Msa0362080 | MtrunA17_Chr3g0117501 | 25.740 | 338 | 231 | 7 | 70 | 403 | 81 | 402 | 8.57e-16 | 78.6 |
| Msa0362080 | MtrunA17_Chr8g0341861 | 24.150 | 294 | 205 | 8 | 109 | 390 | 169 | 456 | 1.01e-15 | 79.0 |
| Msa0362080 | MtrunA17_Chr6g0449891 | 27.812 | 320 | 221 | 6 | 90 | 403 | 93 | 408 | 2.18e-15 | 77.4 |
| Msa0362080 | MtrunA17_Chr2g0288011 | 22.807 | 342 | 240 | 10 | 70 | 404 | 72 | 396 | 9.94e-15 | 75.5 |
| Msa0362080 | MtrunA17_Chr4g0046561 | 27.243 | 301 | 195 | 10 | 116 | 406 | 106 | 392 | 2.98e-14 | 73.9 |
| Msa0362080 | MtrunA17_Chr2g0326791 | 25.080 | 311 | 206 | 7 | 108 | 404 | 7 | 304 | 3.10e-14 | 73.6 |
| Msa0362080 | MtrunA17_Chr5g0419001 | 25.649 | 308 | 193 | 11 | 116 | 404 | 111 | 401 | 1.91e-13 | 71.6 |
| Msa0362080 | MtrunA17_Chr4g0074541 | 22.601 | 323 | 232 | 9 | 86 | 403 | 83 | 392 | 2.23e-13 | 71.2 |
| Msa0362080 | MtrunA17_Chr2g0298931 | 27.402 | 281 | 166 | 12 | 121 | 384 | 67 | 326 | 4.57e-13 | 70.1 |
| Msa0362080 | MtrunA17_Chr4g0028931 | 25.397 | 315 | 207 | 7 | 103 | 404 | 5 | 304 | 4.90e-13 | 69.7 |
| Msa0362080 | MtrunA17_Chr2g0291851 | 24.771 | 327 | 233 | 10 | 80 | 400 | 73 | 392 | 1.32e-12 | 68.9 |
| Msa0362080 | MtrunA17_Chr6g0467391 | 25.080 | 311 | 202 | 8 | 110 | 404 | 9 | 304 | 3.07e-12 | 67.0 |
| Msa0362080 | MtrunA17_Chr6g0467371 | 25.080 | 311 | 202 | 8 | 110 | 404 | 9 | 304 | 3.07e-12 | 67.0 |
| Msa0362080 | MtrunA17_Chr3g0129401 | 23.448 | 290 | 214 | 3 | 119 | 407 | 24 | 306 | 2.55e-11 | 64.7 |
| Msa0362080 | MtrunA17_Chr5g0393381 | 24.917 | 301 | 212 | 5 | 113 | 405 | 15 | 309 | 8.34e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362080 | AT3G11320.1 | 90.820 | 305 | 28 | 0 | 102 | 406 | 4 | 308 | 0.0 | 567 |
| Msa0362080 | AT5G05820.1 | 88.961 | 308 | 33 | 1 | 100 | 406 | 1 | 308 | 0.0 | 556 |
| Msa0362080 | AT3G10290.1 | 66.873 | 323 | 104 | 1 | 87 | 406 | 33 | 355 | 1.20e-155 | 443 |
| Msa0362080 | AT5G04160.1 | 71.186 | 295 | 85 | 0 | 112 | 406 | 15 | 309 | 5.99e-155 | 440 |
| Msa0362080 | AT1G12500.1 | 65.347 | 303 | 105 | 0 | 104 | 406 | 54 | 356 | 1.16e-137 | 398 |
| Msa0362080 | AT1G21870.1 | 35.667 | 300 | 187 | 5 | 105 | 402 | 11 | 306 | 5.79e-52 | 177 |
| Msa0362080 | AT1G77610.1 | 33.904 | 292 | 189 | 3 | 113 | 403 | 13 | 301 | 1.05e-49 | 171 |
| Msa0362080 | AT5G25400.1 | 31.419 | 296 | 189 | 5 | 113 | 402 | 22 | 309 | 4.61e-32 | 124 |
| Msa0362080 | AT5G11230.1 | 31.757 | 296 | 188 | 5 | 113 | 402 | 22 | 309 | 2.84e-31 | 122 |
| Msa0362080 | AT4G32390.1 | 31.081 | 296 | 190 | 5 | 113 | 402 | 22 | 309 | 3.16e-29 | 117 |
| Msa0362080 | AT2G25520.1 | 31.081 | 296 | 190 | 5 | 113 | 402 | 22 | 309 | 3.00e-28 | 114 |
| Msa0362080 | AT3G17430.2 | 30.314 | 287 | 190 | 4 | 122 | 404 | 25 | 305 | 1.04e-25 | 107 |
| Msa0362080 | AT3G17430.1 | 30.314 | 287 | 190 | 4 | 122 | 404 | 25 | 305 | 1.04e-25 | 107 |
| Msa0362080 | AT1G53660.1 | 26.042 | 288 | 200 | 5 | 122 | 404 | 30 | 309 | 3.09e-22 | 97.1 |
| Msa0362080 | AT1G53660.3 | 26.042 | 288 | 200 | 5 | 122 | 404 | 48 | 327 | 4.67e-22 | 97.1 |
| Msa0362080 | AT1G48230.1 | 30.584 | 291 | 184 | 6 | 122 | 404 | 25 | 305 | 6.62e-22 | 96.7 |
| Msa0362080 | AT1G53660.4 | 25.735 | 272 | 191 | 4 | 136 | 404 | 12 | 275 | 8.35e-21 | 92.4 |
| Msa0362080 | AT3G14410.1 | 25.723 | 311 | 213 | 5 | 106 | 407 | 12 | 313 | 9.85e-21 | 92.8 |
| Msa0362080 | AT5G54800.1 | 23.492 | 315 | 229 | 7 | 93 | 402 | 80 | 387 | 6.33e-18 | 85.5 |
| Msa0362080 | AT1G53660.5 | 26.457 | 223 | 154 | 3 | 184 | 404 | 1 | 215 | 3.51e-17 | 80.9 |
| Msa0362080 | AT3G01550.1 | 26.875 | 320 | 223 | 6 | 90 | 403 | 59 | 373 | 5.38e-17 | 82.4 |
| Msa0362080 | AT5G17630.1 | 25.839 | 298 | 205 | 10 | 116 | 406 | 119 | 407 | 1.15e-16 | 81.6 |
| Msa0362080 | AT1G61800.1 | 21.835 | 316 | 227 | 8 | 93 | 403 | 88 | 388 | 9.65e-16 | 79.0 |
| Msa0362080 | AT1G61800.2 | 21.698 | 318 | 229 | 8 | 93 | 405 | 88 | 390 | 1.39e-15 | 78.6 |
| Msa0362080 | AT1G48230.2 | 30.435 | 230 | 144 | 5 | 181 | 404 | 13 | 232 | 3.20e-15 | 76.3 |
| Msa0362080 | AT5G33320.1 | 26.299 | 308 | 212 | 6 | 102 | 402 | 100 | 399 | 3.91e-14 | 73.9 |
| Msa0362080 | AT5G57100.1 | 26.027 | 292 | 193 | 10 | 121 | 404 | 76 | 352 | 4.64e-14 | 73.6 |
| Msa0362080 | AT3G01550.2 | 26.250 | 320 | 220 | 7 | 90 | 403 | 59 | 368 | 5.47e-14 | 73.6 |
| Msa0362080 | AT5G46110.4 | 27.425 | 299 | 197 | 10 | 116 | 406 | 115 | 401 | 1.11e-13 | 72.8 |
| Msa0362080 | AT5G46110.1 | 27.425 | 299 | 197 | 10 | 116 | 406 | 115 | 401 | 1.20e-13 | 72.4 |
| Msa0362080 | AT5G46110.2 | 27.425 | 299 | 197 | 10 | 116 | 406 | 2 | 288 | 1.78e-13 | 70.9 |
| Msa0362080 | AT1G06470.4 | 23.100 | 329 | 231 | 7 | 95 | 407 | 61 | 383 | 2.43e-13 | 71.6 |
| Msa0362080 | AT1G06470.2 | 23.100 | 329 | 231 | 7 | 95 | 407 | 61 | 383 | 2.43e-13 | 71.6 |
| Msa0362080 | AT1G06470.1 | 23.100 | 329 | 231 | 7 | 95 | 407 | 61 | 383 | 2.43e-13 | 71.6 |
| Msa0362080 | AT1G06470.3 | 23.100 | 329 | 231 | 7 | 95 | 407 | 61 | 383 | 2.43e-13 | 71.6 |
| Msa0362080 | AT2G28315.1 | 22.896 | 297 | 211 | 6 | 110 | 399 | 9 | 294 | 1.24e-11 | 65.9 |
| Msa0362080 | AT1G53660.2 | 25.843 | 178 | 129 | 2 | 122 | 296 | 48 | 225 | 1.45e-11 | 64.7 |
| Msa0362080 | AT5G57100.2 | 28.947 | 190 | 118 | 8 | 121 | 303 | 76 | 255 | 2.54e-11 | 64.7 |
| Msa0362080 | AT4G09810.1 | 23.490 | 298 | 217 | 4 | 114 | 407 | 16 | 306 | 2.68e-11 | 64.7 |
| Msa0362080 | AT2G28315.2 | 22.896 | 297 | 211 | 6 | 110 | 399 | 9 | 294 | 7.36e-11 | 63.5 |
| Msa0362080 | AT5G55950.1 | 26.394 | 269 | 165 | 8 | 121 | 376 | 69 | 317 | 7.41e-11 | 63.9 |
Find 86 sgRNAs with CRISPR-Local
Find 419 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCAAGTTTCCATTTATT+TGG | 0.112862 | 3_1:+52909438 | Msa0362080:CDS |
| ACCCTTGTTCCTGTTGTTAC+TGG | 0.191940 | 3_1:+52908189 | Msa0362080:CDS |
| CAATATCACCACATCTTAAT+TGG | 0.228611 | 3_1:+52904088 | Msa0362080:CDS |
| AAACTGGGTTTCTAAATATT+AGG | 0.258669 | 3_1:-52911029 | None:intergenic |
| ATACAATGAATCCAAATAAA+TGG | 0.258981 | 3_1:-52909449 | None:intergenic |
| TCTTCCCGCCACACTTATAA+TGG | 0.261442 | 3_1:+52909685 | Msa0362080:CDS |
| ATCATACCAGTGACTGAAAC+TGG | 0.266685 | 3_1:-52911045 | None:intergenic |
| TTCTGTGTTTCTGTTGTGTT+TGG | 0.269088 | 3_1:+52908042 | Msa0362080:CDS |
| GCAACTGTCATAGCTATTTC+TGG | 0.284171 | 3_1:+52903899 | Msa0362080:CDS |
| GAGACGATCCCAAGATAATT+TGG | 0.307870 | 3_1:+52909744 | Msa0362080:CDS |
| ATTGGTCAGGTTGACAAAAT+AGG | 0.310667 | 3_1:-52909792 | None:intergenic |
| AAGTATTTGTTGAGCAACTA+TGG | 0.329770 | 3_1:+52907871 | Msa0362080:CDS |
| TCATCAAATTATTATTCATA+TGG | 0.349278 | 3_1:+52904150 | Msa0362080:CDS |
| TCTTCCTGTATCGTTTAATC+AGG | 0.373216 | 3_1:+52908083 | Msa0362080:CDS |
| TAGCAGATACCAAATTATCT+TGG | 0.373919 | 3_1:-52909753 | None:intergenic |
| GAAATAGCTATGACAGTTGC+TGG | 0.376711 | 3_1:-52903896 | None:intergenic |
| GATAATCGGATCATCATTCT+TGG | 0.383960 | 3_1:+52911130 | Msa0362080:exon |
| GTCACTGGTATGATGGGTTA+TGG | 0.398626 | 3_1:+52911054 | Msa0362080:CDS |
| TCAACACGTTTCTTCACAAT+AGG | 0.398972 | 3_1:+52907799 | Msa0362080:CDS |
| AAAGCGAACAAAGGGATAAT+CGG | 0.420587 | 3_1:+52911116 | Msa0362080:exon |
| CAGGTTTCTGAAGATCAAAA+AGG | 0.421249 | 3_1:+52907754 | Msa0362080:intron |
| TACCAGTGCTCTGACCCTTC+AGG | 0.423819 | 3_1:+52909832 | Msa0362080:CDS |
| AGTTTCAGTCACTGGTATGA+TGG | 0.426605 | 3_1:+52911047 | Msa0362080:CDS |
| TCTGTGTTTCTGTTGTGTTT+GGG | 0.427601 | 3_1:+52908043 | Msa0362080:CDS |
| AGCTGATTCCTACAGGTACT+AGG | 0.431361 | 3_1:+52910970 | Msa0362080:intron |
| CTGGTGTTGTTATTGCTAGT+GGG | 0.433213 | 3_1:+52908208 | Msa0362080:CDS |
| TCATGGTTGGCCACTTGAAA+AGG | 0.435118 | 3_1:+52904236 | Msa0362080:CDS |
| TCCTTCAGAAACATTCACTA+TGG | 0.451405 | 3_1:-52904190 | None:intergenic |
| GGTTATGGACTCACAGTCTT+CGG | 0.464078 | 3_1:+52911069 | Msa0362080:CDS |
| GATCTTAAAGAATTGAATCC+TGG | 0.465525 | 3_1:-52908001 | None:intergenic |
| AGAAACCCAGTTTCAGTCAC+TGG | 0.466134 | 3_1:+52911039 | Msa0362080:CDS |
| CCTCCTTTACATGGCTCCAA+TGG | 0.467277 | 3_1:+52909649 | Msa0362080:CDS |
| AATGAATCTCCTCCTTTACA+TGG | 0.468540 | 3_1:+52909640 | Msa0362080:CDS |
| AGCAGATACCAAATTATCTT+GGG | 0.471217 | 3_1:-52909752 | None:intergenic |
| TTACATGGCTCCAATGGCTG+TGG | 0.474205 | 3_1:+52909655 | Msa0362080:CDS |
| CTCTCCCTCAATCTCATGGT+TGG | 0.484941 | 3_1:+52904223 | Msa0362080:CDS |
| TACCTGAAGGGTCAGAGCAC+TGG | 0.484949 | 3_1:-52909834 | None:intergenic |
| AGAAGGAAAACCACAGCCAT+TGG | 0.484967 | 3_1:-52909665 | None:intergenic |
| CTATGCAAACTATTCGATCC+AGG | 0.487712 | 3_1:+52907983 | Msa0362080:CDS |
| ATCTCTCTCCCTCAATCTCA+TGG | 0.488796 | 3_1:+52904219 | Msa0362080:CDS |
| ATCGCCTGATTAAACGATAC+AGG | 0.489040 | 3_1:-52908087 | None:intergenic |
| AATCCAAATAAATGGAAACT+TGG | 0.501652 | 3_1:-52909441 | None:intergenic |
| AAAAGGTTCTAAGACAATGA+AGG | 0.505897 | 3_1:+52907771 | Msa0362080:CDS |
| ATATTCAAAGGCATATTCCA+TGG | 0.507241 | 3_1:+52904112 | Msa0362080:CDS |
| ATAACAACACCAGTAACAAC+AGG | 0.507549 | 3_1:-52908198 | None:intergenic |
| ACTGGTGTTGTTATTGCTAG+TGG | 0.510277 | 3_1:+52908207 | Msa0362080:CDS |
| TTATAAGTGTGGCGGGAAGA+AGG | 0.513711 | 3_1:-52909682 | None:intergenic |
| CACCAGTAACAACAGGAACA+AGG | 0.523976 | 3_1:-52908191 | None:intergenic |
| AGTGGCCAACCATGAGATTG+AGG | 0.525477 | 3_1:-52904228 | None:intergenic |
| GTATCGTTTAATCAGGCGAT+TGG | 0.528170 | 3_1:+52908090 | Msa0362080:CDS |
| GCTGATTCCTACAGGTACTA+GGG | 0.530609 | 3_1:+52910971 | Msa0362080:intron |
| ATAATCGGATCATCATTCTT+GGG | 0.533628 | 3_1:+52911131 | Msa0362080:exon |
| ATCTTAATTGGAATATTCAA+AGG | 0.535085 | 3_1:+52904100 | Msa0362080:CDS |
| TTGGTATCTGCTATTTAACT+CGG | 0.538514 | 3_1:+52909763 | Msa0362080:CDS |
| GTTTCAGTCACTGGTATGAT+GGG | 0.539473 | 3_1:+52911048 | Msa0362080:CDS |
| CAGCCATTGGAGCCATGTAA+AGG | 0.544406 | 3_1:-52909652 | None:intergenic |
| GCCCTAAAATCAGTGCTACA+AGG | 0.550043 | 3_1:+52909495 | Msa0362080:CDS |
| CAATAGAAGAACACCAATGT+TGG | 0.550271 | 3_1:-52907845 | None:intergenic |
| TTCTTCCATTATAAGTGTGG+CGG | 0.557091 | 3_1:-52909690 | None:intergenic |
| GTGGCCAACCATGAGATTGA+GGG | 0.558110 | 3_1:-52904227 | None:intergenic |
| TCTTCCATTATAAGTGTGGC+GGG | 0.560381 | 3_1:-52909689 | None:intergenic |
| TCAGGTAGGAGGAAGAAACT+TGG | 0.562941 | 3_1:+52904036 | Msa0362080:intron |
| TGAATATTCCAATTAAGATG+TGG | 0.568671 | 3_1:-52904096 | None:intergenic |
| AAAGGTTCTAAGACAATGAA+GGG | 0.568749 | 3_1:+52907772 | Msa0362080:CDS |
| ACTTATAATGGAAGAAAATG+TGG | 0.577031 | 3_1:+52909697 | Msa0362080:CDS |
| TTAGCTATGTTGCTATAGCA+TGG | 0.581935 | 3_1:+52907947 | Msa0362080:CDS |
| TGGTGTTGTTATTGCTAGTG+GGG | 0.582609 | 3_1:+52908209 | Msa0362080:CDS |
| TATTCAAAGGCATATTCCAT+GGG | 0.587589 | 3_1:+52904113 | Msa0362080:CDS |
| ATGAGATTGAGGGAGAGAGA+TGG | 0.595186 | 3_1:-52904217 | None:intergenic |
| CTGGATCGAATAGTTTGCAT+AGG | 0.596131 | 3_1:-52907982 | None:intergenic |
| CAGGTACTAGGGAATGCTAA+AGG | 0.600457 | 3_1:+52910982 | Msa0362080:intron |
| GAAGTAGTCAAATCAACCCA+TGG | 0.615237 | 3_1:-52904129 | None:intergenic |
| CAATAGGTCTTGTAGCAGCA+TGG | 0.617332 | 3_1:+52907815 | Msa0362080:CDS |
| ACCAGTAACAACAGGAACAA+GGG | 0.620205 | 3_1:-52908190 | None:intergenic |
| TCATACCAGTGACTGAAACT+GGG | 0.622203 | 3_1:-52911044 | None:intergenic |
| GCCATAGTGAATGTTTCTGA+AGG | 0.623656 | 3_1:+52904189 | Msa0362080:CDS |
| CCATTGGAGCCATGTAAAGG+AGG | 0.626569 | 3_1:-52909649 | None:intergenic |
| ATAGTGAATGTTTCTGAAGG+AGG | 0.632786 | 3_1:+52904192 | Msa0362080:CDS |
| GCATGGTATTCATCCAACAT+TGG | 0.639937 | 3_1:+52907832 | Msa0362080:CDS |
| ATAATGGAAGAAAATGTGGT+CGG | 0.647373 | 3_1:+52909701 | Msa0362080:CDS |
| AAATTCACCTCATGGAAGTG+AGG | 0.648634 | 3_1:-52911206 | None:intergenic |
| AACTTGGTGAAATATCTGCA+AGG | 0.661245 | 3_1:+52904052 | Msa0362080:CDS |
| ACAGTTGAGACTTACCTGAA+GGG | 0.665868 | 3_1:-52909846 | None:intergenic |
| AAATGTGGTCGGAATCACGT+TGG | 0.686602 | 3_1:+52909712 | Msa0362080:CDS |
| ACACGCAGTCATATGACACA+TGG | 0.688652 | 3_1:-52907917 | None:intergenic |
| CAGACAACCTCACTTCCATG+AGG | 0.765720 | 3_1:+52911199 | Msa0362080:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAAAAAAATTA+AGG | - | chr3_1:52904349-52904368 | None:intergenic | 0.0% |
| !!! | AATATATTTTTCAAAACTAA+AGG | - | chr3_1:52906192-52906211 | None:intergenic | 10.0% |
| !!! | TAGTAAATTTTCTAAATAAT+AGG | - | chr3_1:52906482-52906501 | None:intergenic | 10.0% |
| !! | TTTAGTTAATAAAAATGTAA+CGG | - | chr3_1:52906558-52906577 | None:intergenic | 10.0% |
| !!! | TTTCTTTCAAAAAATATTTT+TGG | - | chr3_1:52906595-52906614 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTATTTCAATTG+CGG | - | chr3_1:52906699-52906718 | None:intergenic | 10.0% |
| !!! | TAAAAAATAAAAAGCATTTT+TGG | - | chr3_1:52906768-52906787 | None:intergenic | 10.0% |
| !! | AGTGATAAAAATAAATTAAT+CGG | - | chr3_1:52906859-52906878 | None:intergenic | 10.0% |
| !! | AAAGTTAAATTAAATATAGA+AGG | - | chr3_1:52910048-52910067 | None:intergenic | 10.0% |
| !! | AAATAACAGATAAAAAATAA+AGG | - | chr3_1:52910188-52910207 | None:intergenic | 10.0% |
| !! | TCATCAAATTATTATTCATA+TGG | + | chr3_1:52904150-52904169 | Msa0362080:CDS | 15.0% |
| !!! | AGTTTGATTTTGAATTTTTT+AGG | - | chr3_1:52905046-52905065 | None:intergenic | 15.0% |
| !! | ATTAGAAAGAAAAAATTCAA+AGG | - | chr3_1:52905229-52905248 | None:intergenic | 15.0% |
| !!! | TAAATTTTACTTTCATTTGT+TGG | - | chr3_1:52905560-52905579 | None:intergenic | 15.0% |
| !! | ATTTAGCAAAAAATAAATTG+AGG | - | chr3_1:52906040-52906059 | None:intergenic | 15.0% |
| !!! | CATCGTTTAATATATATTTT+TGG | - | chr3_1:52906830-52906849 | None:intergenic | 15.0% |
| !! | TAGAATATAGTTTATATACA+AGG | - | chr3_1:52907117-52907136 | None:intergenic | 15.0% |
| !!! | GTTAAAAGTCTTATTTTATT+CGG | - | chr3_1:52907199-52907218 | None:intergenic | 15.0% |
| !!! | TTATATTATGACTTTTAAGA+GGG | + | chr3_1:52908146-52908165 | Msa0362080:CDS | 15.0% |
| !!! | ATATTTTTTTTTCTTCAATG+AGG | + | chr3_1:52908732-52908751 | Msa0362080:intron | 15.0% |
| !! | TGTGAAAAATAAAAATATTC+TGG | + | chr3_1:52909374-52909393 | Msa0362080:intron | 15.0% |
| !!! | AAACTAATCGTTTTATTTTT+TGG | + | chr3_1:52909551-52909570 | Msa0362080:intron | 15.0% |
| !! | ACTATTAAGACTTAAAATTT+AGG | + | chr3_1:52909897-52909916 | Msa0362080:intron | 15.0% |
| !! | GTAAAAATTAAAATGAAACA+AGG | - | chr3_1:52910276-52910295 | None:intergenic | 15.0% |
| !!! | ATTAAAAGTAATTTGAAATG+TGG | - | chr3_1:52910737-52910756 | None:intergenic | 15.0% |
| !! | ATCTTAATTGGAATATTCAA+AGG | + | chr3_1:52904100-52904119 | Msa0362080:CDS | 20.0% |
| !!! | TAATTTTTTAACTGAGACAT+TGG | - | chr3_1:52904390-52904409 | None:intergenic | 20.0% |
| !!! | GAAAAGTTGATGTTTTTTTA+AGG | - | chr3_1:52904541-52904560 | None:intergenic | 20.0% |
| !! | AATGATTCTACAAAAACTAT+TGG | - | chr3_1:52904584-52904603 | None:intergenic | 20.0% |
| !!! | TTTAGTATTTTATGTGTTTC+TGG | + | chr3_1:52904795-52904814 | Msa0362080:intron | 20.0% |
| !!! | TTAGTATTTTATGTGTTTCT+GGG | + | chr3_1:52904796-52904815 | Msa0362080:intron | 20.0% |
| !!! | ATAAGGATATATTTTGGATT+GGG | - | chr3_1:52904892-52904911 | None:intergenic | 20.0% |
| !!! | AATAAGGATATATTTTGGAT+TGG | - | chr3_1:52904893-52904912 | None:intergenic | 20.0% |
| !! | AATCCAAAATATATCCTTAT+TGG | + | chr3_1:52904892-52904911 | Msa0362080:intron | 20.0% |
| !!! | TTAATATTTTTGGGATCAAA+AGG | - | chr3_1:52904935-52904954 | None:intergenic | 20.0% |
| !!! | CAAGGACTTTTAATATTTTT+GGG | - | chr3_1:52904944-52904963 | None:intergenic | 20.0% |
| !!! | ACAAGGACTTTTAATATTTT+TGG | - | chr3_1:52904945-52904964 | None:intergenic | 20.0% |
| !! | ATGAGATAAATACAAAATGT+GGG | - | chr3_1:52904977-52904996 | None:intergenic | 20.0% |
| !! | AATGAGATAAATACAAAATG+TGG | - | chr3_1:52904978-52904997 | None:intergenic | 20.0% |
| !! | AAATCAAACTTTGACAAAAA+AGG | + | chr3_1:52905056-52905075 | Msa0362080:intron | 20.0% |
| !!! | ATCTTGATCATATGATTTTT+AGG | + | chr3_1:52905386-52905405 | Msa0362080:intron | 20.0% |
| !!! | GAAGAAAAAATATCTTGTTT+TGG | - | chr3_1:52905586-52905605 | None:intergenic | 20.0% |
| !!! | TATTTTTTTTTTGTGTGTGA+TGG | + | chr3_1:52905727-52905746 | Msa0362080:intron | 20.0% |
| !! | TGTGAAAACAAAGAAATAAA+AGG | - | chr3_1:52905803-52905822 | None:intergenic | 20.0% |
| !!! | AATTGCAATAATTTCTTTTG+AGG | + | chr3_1:52906141-52906160 | Msa0362080:intron | 20.0% |
| !!! | CCACTATTTTTACAAAATAA+GGG | - | chr3_1:52906237-52906256 | None:intergenic | 20.0% |
| !!! | CCTTATTTTGTAAAAATAGT+GGG | + | chr3_1:52906235-52906254 | Msa0362080:intron | 20.0% |
| !!! | GTACATATTTGACTTTTTTT+GGG | - | chr3_1:52906344-52906363 | None:intergenic | 20.0% |
| !!! | AGTACATATTTGACTTTTTT+TGG | - | chr3_1:52906345-52906364 | None:intergenic | 20.0% |
| !! | AAAGTCAAATATGTACTATT+TGG | + | chr3_1:52906348-52906367 | Msa0362080:intron | 20.0% |
| !!! | CTTTTGCAATTTATTTATCA+TGG | - | chr3_1:52906533-52906552 | None:intergenic | 20.0% |
| !! | TAAAGTGTAGAAGTTAAATT+TGG | - | chr3_1:52906626-52906645 | None:intergenic | 20.0% |
| !!! | TATGAAACCAACTTTTTTTA+AGG | + | chr3_1:52906921-52906940 | Msa0362080:intron | 20.0% |
| !! | TAAAACCAACTTGTATAATA+TGG | + | chr3_1:52906949-52906968 | Msa0362080:intron | 20.0% |
| !! | AAAACCAACTTGTATAATAT+GGG | + | chr3_1:52906950-52906969 | Msa0362080:intron | 20.0% |
| !!! | GAAAAAGATTTTGGAATTTT+AGG | - | chr3_1:52907251-52907270 | None:intergenic | 20.0% |
| !!! | AATTCCAAAATCTTTTTCTA+AGG | + | chr3_1:52907253-52907272 | Msa0362080:intron | 20.0% |
| !! | CAATGAAAAAAAAAAGTTGA+AGG | - | chr3_1:52907348-52907367 | None:intergenic | 20.0% |
| !!! | ATTTAAAGCTATATAGTTGA+AGG | - | chr3_1:52907416-52907435 | None:intergenic | 20.0% |
| !!! | AGTTTGTTTTTTTTGTTTTG+AGG | - | chr3_1:52907533-52907552 | None:intergenic | 20.0% |
| !! | AGTCATAATATAAGCAAAAA+TGG | - | chr3_1:52908139-52908158 | None:intergenic | 20.0% |
| !!! | CTTATATTATGACTTTTAAG+AGG | + | chr3_1:52908145-52908164 | Msa0362080:CDS | 20.0% |
| !!! | ATTCAGTTTTTAATTGTTGA+TGG | + | chr3_1:52908283-52908302 | Msa0362080:intron | 20.0% |
| !! | AAAATGATATTGTGTATTGT+TGG | + | chr3_1:52908309-52908328 | Msa0362080:intron | 20.0% |
| !!! | CATCAAATTTTATCTAGTTT+AGG | + | chr3_1:52908594-52908613 | Msa0362080:intron | 20.0% |
| !!! | TAAATGGATTTATATGCTTT+AGG | + | chr3_1:52908762-52908781 | Msa0362080:intron | 20.0% |
| !! | CCTATTTATAAGAGAAATTT+GGG | - | chr3_1:52909176-52909195 | None:intergenic | 20.0% |
| !! | TCCTATTTATAAGAGAAATT+TGG | - | chr3_1:52909177-52909196 | None:intergenic | 20.0% |
| !! | ATACAATGAATCCAAATAAA+TGG | - | chr3_1:52909452-52909471 | None:intergenic | 20.0% |
| !! | AACTAAATCTTAATCTCATT+GGG | - | chr3_1:52909993-52910012 | None:intergenic | 20.0% |
| !! | AAATGAAATCACAACTAAAT+GGG | - | chr3_1:52910556-52910575 | None:intergenic | 20.0% |
| !! | AATGTATACAATTAGTGTTT+AGG | + | chr3_1:52910671-52910690 | Msa0362080:intron | 20.0% |
| !! | TGTCATAAATATAAGTAGAT+GGG | + | chr3_1:52910822-52910841 | Msa0362080:intron | 20.0% |
| !! | ATTTTGCTTAAGGATCATAT+AGG | - | chr3_1:52903977-52903996 | None:intergenic | 25.0% |
| ! | ACATGAAGAATTGATCTATT+TGG | + | chr3_1:52904008-52904027 | Msa0362080:intron | 25.0% |
| !!! | TTGATCTATTTGGTTTTTTC+AGG | + | chr3_1:52904018-52904037 | Msa0362080:intron | 25.0% |
| ! | TGAATATTCCAATTAAGATG+TGG | - | chr3_1:52904099-52904118 | None:intergenic | 25.0% |
| ! | AAATACTAAAATGTCTCCAA+CGG | - | chr3_1:52904785-52904804 | None:intergenic | 25.0% |
| !! | GAACCAATAAGGATATATTT+TGG | - | chr3_1:52904898-52904917 | None:intergenic | 25.0% |
| !!! | GTTACTTTAGGATATTTCTT+AGG | - | chr3_1:52905261-52905280 | None:intergenic | 25.0% |
| !!! | TATGTTATTCAGTTTTGTCT+TGG | - | chr3_1:52905283-52905302 | None:intergenic | 25.0% |
| ! | ATGTTTCGACTAAAATTGAA+CGG | + | chr3_1:52905423-52905442 | Msa0362080:intron | 25.0% |
| !! | CATTATGATTTTGTGATTGT+AGG | + | chr3_1:52905459-52905478 | Msa0362080:intron | 25.0% |
| !! | CAAAATAGGTTGAAAAGTTT+AGG | + | chr3_1:52905650-52905669 | Msa0362080:intron | 25.0% |
| ! | AAATTTAAGCATGTTCTTAC+TGG | + | chr3_1:52905690-52905709 | Msa0362080:intron | 25.0% |
| ! | AATTTAAGCATGTTCTTACT+GGG | + | chr3_1:52905691-52905710 | Msa0362080:intron | 25.0% |
| !!! | TTTGTTTTCACATAAGAAAG+TGG | + | chr3_1:52905811-52905830 | Msa0362080:intron | 25.0% |
| !! | ACATTAATGTTACTTAGGTT+AGG | - | chr3_1:52905869-52905888 | None:intergenic | 25.0% |
| !! | TGCTTACATTAATGTTACTT+AGG | - | chr3_1:52905874-52905893 | None:intergenic | 25.0% |
| ! | TATTAGGAAAAGTCAAACTA+AGG | - | chr3_1:52905942-52905961 | None:intergenic | 25.0% |
| !!! | ACGACTTTGGAATATTTATT+AGG | - | chr3_1:52905958-52905977 | None:intergenic | 25.0% |
| ! | TAATAAATATTCCAAAGTCG+TGG | + | chr3_1:52905957-52905976 | Msa0362080:intron | 25.0% |
| ! | AATAAATATTCCAAAGTCGT+GGG | + | chr3_1:52905958-52905977 | Msa0362080:intron | 25.0% |
| ! | AGCAAAAAATAAATTGAGGA+AGG | - | chr3_1:52906036-52906055 | None:intergenic | 25.0% |
| !! | ATAAGGGAAGTATAATTTGA+GGG | - | chr3_1:52906221-52906240 | None:intergenic | 25.0% |
| !! | AATAAGGGAAGTATAATTTG+AGG | - | chr3_1:52906222-52906241 | None:intergenic | 25.0% |
| !!! | CCCTTATTTTGTAAAAATAG+TGG | + | chr3_1:52906234-52906253 | Msa0362080:intron | 25.0% |
| !!! | CCCACTATTTTTACAAAATA+AGG | - | chr3_1:52906238-52906257 | None:intergenic | 25.0% |
| ! | TTGTAATTATGATGTGATGT+AGG | - | chr3_1:52906663-52906682 | None:intergenic | 25.0% |
| ! | ATTGAAAATAGTGATGATAG+AGG | - | chr3_1:52906744-52906763 | None:intergenic | 25.0% |
| ! | AATGCTAAATGCCATAAATA+AGG | + | chr3_1:52906803-52906822 | Msa0362080:intron | 25.0% |
| ! | ATGCTAAATGCCATAAATAA+GGG | + | chr3_1:52906804-52906823 | Msa0362080:intron | 25.0% |
| !!! | ATATTTTTGGCCCTTATTTA+TGG | - | chr3_1:52906817-52906836 | None:intergenic | 25.0% |
| !! | AACAAACATCGATAGAATTT+TGG | + | chr3_1:52906879-52906898 | Msa0362080:intron | 25.0% |
| !! | ACAAACATCGATAGAATTTT+GGG | + | chr3_1:52906880-52906899 | Msa0362080:intron | 25.0% |
| ! | TACAAGTCCTTAAAAAAAGT+TGG | - | chr3_1:52906931-52906950 | None:intergenic | 25.0% |
| !! | GTTACCTTAGAAAAAGATTT+TGG | - | chr3_1:52907260-52907279 | None:intergenic | 25.0% |
| !! | TGTTAGTTAATTGACTCTTT+AGG | - | chr3_1:52907304-52907323 | None:intergenic | 25.0% |
| ! | GAGAGAAGAAGAAATAAATT+AGG | - | chr3_1:52907446-52907465 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTTGTTTTGAGGA+TGG | - | chr3_1:52907529-52907548 | None:intergenic | 25.0% |
| !!! | GAAAAAGTTGTTGACTTTAA+CGG | - | chr3_1:52907666-52907685 | None:intergenic | 25.0% |
| !! | TCATGATTGTGATTTGAAAT+GGG | - | chr3_1:52907726-52907745 | None:intergenic | 25.0% |
| ! | TTCATGATTGTGATTTGAAA+TGG | - | chr3_1:52907727-52907746 | None:intergenic | 25.0% |
| ! | GAAACAAAAACAATGAACAA+GGG | - | chr3_1:52908253-52908272 | None:intergenic | 25.0% |
| ! | AGAAACAAAAACAATGAACA+AGG | - | chr3_1:52908254-52908273 | None:intergenic | 25.0% |
| ! | AATTGTATTTAGTGTATGCT+TGG | + | chr3_1:52908398-52908417 | Msa0362080:intron | 25.0% |
| ! | TGAATAATGTGACTTATGTT+TGG | + | chr3_1:52908475-52908494 | Msa0362080:intron | 25.0% |
| ! | ATGATATTGTGCATTGTTAA+TGG | + | chr3_1:52908509-52908528 | Msa0362080:intron | 25.0% |
| ! | TGATATTGTGCATTGTTAAT+GGG | + | chr3_1:52908510-52908529 | Msa0362080:intron | 25.0% |
| !! | TTATCTAGTTTAGGTTTGTT+TGG | + | chr3_1:52908603-52908622 | Msa0362080:intron | 25.0% |
| !! | TATCTAGTTTAGGTTTGTTT+GGG | + | chr3_1:52908604-52908623 | Msa0362080:intron | 25.0% |
| ! | TGTAAGATTATGTGTTGAAT+TGG | + | chr3_1:52908646-52908665 | Msa0362080:intron | 25.0% |
| !!! | TCAATGAGGAATTTGTTAAA+TGG | + | chr3_1:52908746-52908765 | Msa0362080:intron | 25.0% |
| ! | CCTAACTTTCTCTTATAAAT+AGG | - | chr3_1:52909094-52909113 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+AGG | + | chr3_1:52909091-52909110 | Msa0362080:intron | 25.0% |
| ! | TCAACAAAAGTGAATGTATT+TGG | + | chr3_1:52909114-52909133 | Msa0362080:intron | 25.0% |
| ! | CCCAAATTTCTCTTATAAAT+AGG | + | chr3_1:52909173-52909192 | Msa0362080:intron | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | + | chr3_1:52909178-52909197 | Msa0362080:intron | 25.0% |
| !! | TTGTATCCAATTTTAAGCAA+TGG | + | chr3_1:52909309-52909328 | Msa0362080:intron | 25.0% |
| ! | AATCTACCATTGCTTAAAAT+TGG | - | chr3_1:52909318-52909337 | None:intergenic | 25.0% |
| ! | AATCCAAATAAATGGAAACT+TGG | - | chr3_1:52909444-52909463 | None:intergenic | 25.0% |
| !! | ATTTTCTTCCATTATAAGTG+TGG | - | chr3_1:52909696-52909715 | None:intergenic | 25.0% |
| !! | ACTTATAATGGAAGAAAATG+TGG | + | chr3_1:52909697-52909716 | Msa0362080:CDS | 25.0% |
| ! | CAACTAAATCTTAATCTCAT+TGG | - | chr3_1:52909994-52910013 | None:intergenic | 25.0% |
| ! | ATATAGAAGGAAAACAAAGA+AGG | - | chr3_1:52910035-52910054 | None:intergenic | 25.0% |
| ! | TTTGTATCACAATATTAGCA+TGG | + | chr3_1:52910153-52910172 | Msa0362080:intron | 25.0% |
| !!! | TGTTATTTTGTAATGTGCAT+TGG | + | chr3_1:52910200-52910219 | Msa0362080:intron | 25.0% |
| ! | AAACTAGACTAAATATTGCT+AGG | - | chr3_1:52910303-52910322 | None:intergenic | 25.0% |
| !!! | ATTAATTTTGATGACATCTC+TGG | - | chr3_1:52910373-52910392 | None:intergenic | 25.0% |
| ! | GATGTCATCAAAATTAATTG+AGG | + | chr3_1:52910375-52910394 | Msa0362080:intron | 25.0% |
| ! | CAAATGAAATCACAACTAAA+TGG | - | chr3_1:52910557-52910576 | None:intergenic | 25.0% |
| ! | TCAAATATTTATGTAGCTGA+TGG | - | chr3_1:52910583-52910602 | None:intergenic | 25.0% |
| ! | AGCTACATAAATATTTGATC+AGG | + | chr3_1:52910585-52910604 | Msa0362080:intron | 25.0% |
| ! | GTGTCATAAATATAAGTAGA+TGG | + | chr3_1:52910821-52910840 | Msa0362080:intron | 25.0% |
| ! | AAACTGGGTTTCTAAATATT+AGG | - | chr3_1:52911032-52911051 | None:intergenic | 25.0% |
| ! | TGATCACTTGATTTTGCTTA+AGG | - | chr3_1:52903987-52904006 | None:intergenic | 30.0% |
| !!! | TCTATTTGGTTTTTTCAGGT+AGG | + | chr3_1:52904022-52904041 | Msa0362080:intron | 30.0% |
| CAATATCACCACATCTTAAT+TGG | + | chr3_1:52904088-52904107 | Msa0362080:CDS | 30.0% | |
| ! | ATATTCAAAGGCATATTCCA+TGG | + | chr3_1:52904112-52904131 | Msa0362080:CDS | 30.0% |
| ! | TATTCAAAGGCATATTCCAT+GGG | + | chr3_1:52904113-52904132 | Msa0362080:CDS | 30.0% |
| ! | TAAGTTGAAAGTGAGACTTT+AGG | - | chr3_1:52904450-52904469 | None:intergenic | 30.0% |
| ! | TTGTTTTCTTAACCAATGTC+CGG | + | chr3_1:52904483-52904502 | Msa0362080:intron | 30.0% |
| !! | AGTCTTTTTCATGTGTTTCT+AGG | - | chr3_1:52904699-52904718 | None:intergenic | 30.0% |
| AAAAAGACTAAAAAGTCCAG+CGG | + | chr3_1:52904710-52904729 | Msa0362080:intron | 30.0% | |
| ACTTATAACTAGAAAACCGA+CGG | - | chr3_1:52904746-52904765 | None:intergenic | 30.0% | |
| !!! | GTTTTCTAGTTATAAGTCAG+CGG | + | chr3_1:52904749-52904768 | Msa0362080:intron | 30.0% |
| ATAAGGTTTAGGAACCAATA+AGG | - | chr3_1:52904909-52904928 | None:intergenic | 30.0% | |
| ! | TCAAAAGGAGTATAAGGTTT+AGG | - | chr3_1:52904920-52904939 | None:intergenic | 30.0% |
| ! | GAATATTTAGGGTAGACATT+AGG | - | chr3_1:52905116-52905135 | None:intergenic | 30.0% |
| GCTAGGAATAGGAATATTTA+GGG | - | chr3_1:52905127-52905146 | None:intergenic | 30.0% | |
| AGCTAGGAATAGGAATATTT+AGG | - | chr3_1:52905128-52905147 | None:intergenic | 30.0% | |
| CTTTATTGTTAGCTAGGAAT+AGG | - | chr3_1:52905138-52905157 | None:intergenic | 30.0% | |
| GTACTACTTTATTGTTAGCT+AGG | - | chr3_1:52905144-52905163 | None:intergenic | 30.0% | |
| AGTAGTACTTACATGACAAA+TGG | + | chr3_1:52905156-52905175 | Msa0362080:intron | 30.0% | |
| GTAGTACTTACATGACAAAT+GGG | + | chr3_1:52905157-52905176 | Msa0362080:intron | 30.0% | |
| ! | GATTTGAGCGAATTTTTGTA+TGG | + | chr3_1:52905179-52905198 | Msa0362080:intron | 30.0% |
| ! | GAAAAAATTCAAAGGCGTAT+TGG | - | chr3_1:52905221-52905240 | None:intergenic | 30.0% |
| !! | AGTTTTGTCTTGGTTACTTT+AGG | - | chr3_1:52905273-52905292 | None:intergenic | 30.0% |
| ATTTCCAACTACAATGAAGT+GGG | - | chr3_1:52905335-52905354 | None:intergenic | 30.0% | |
| AATTTCCAACTACAATGAAG+TGG | - | chr3_1:52905336-52905355 | None:intergenic | 30.0% | |
| ACTTCATTGTAGTTGGAAAT+TGG | + | chr3_1:52905335-52905354 | Msa0362080:intron | 30.0% | |
| CTTCATTGTAGTTGGAAATT+GGG | + | chr3_1:52905336-52905355 | Msa0362080:intron | 30.0% | |
| TTAATATTCTGCACGACAAT+TGG | - | chr3_1:52905495-52905514 | None:intergenic | 30.0% | |
| TCAAACTAAGGTGCAAAAAT+TGG | - | chr3_1:52905930-52905949 | None:intergenic | 30.0% | |
| ! | TAAGGGAAGTATAATTTGAG+GGG | - | chr3_1:52906220-52906239 | None:intergenic | 30.0% |
| TGTTGTAATTGTATGGTCAA+CGG | - | chr3_1:52906455-52906474 | None:intergenic | 30.0% | |
| TACACCCATATTATACAAGT+TGG | - | chr3_1:52906957-52906976 | None:intergenic | 30.0% | |
| ! | TTGTGATTTGAAATGGGTAA+TGG | - | chr3_1:52907720-52907739 | None:intergenic | 30.0% |
| CACAATCATGAAATTGTTAC+AGG | + | chr3_1:52907735-52907754 | Msa0362080:intron | 30.0% | |
| !! | AAAAGGTTCTAAGACAATGA+AGG | + | chr3_1:52907771-52907790 | Msa0362080:CDS | 30.0% |
| !! | AAAGGTTCTAAGACAATGAA+GGG | + | chr3_1:52907772-52907791 | Msa0362080:CDS | 30.0% |
| ! | AAGTATTTGTTGAGCAACTA+TGG | + | chr3_1:52907871-52907890 | Msa0362080:CDS | 30.0% |
| GATCTTAAAGAATTGAATCC+TGG | - | chr3_1:52908004-52908023 | None:intergenic | 30.0% | |
| GCAAAAATGGCAGTAAAAAA+AGG | - | chr3_1:52908126-52908145 | None:intergenic | 30.0% | |
| !! | TATTATGACTTTTAAGAGGG+AGG | + | chr3_1:52908149-52908168 | Msa0362080:CDS | 30.0% |
| TGATATTGTGTATTGTTGGT+AGG | + | chr3_1:52908313-52908332 | Msa0362080:intron | 30.0% | |
| !!! | TGATAGGGGAGAAATTTTTT+TGG | + | chr3_1:52908345-52908364 | Msa0362080:intron | 30.0% |
| !!! | GATAGGGGAGAAATTTTTTT+GGG | + | chr3_1:52908346-52908365 | Msa0362080:intron | 30.0% |
| !!! | ATAGGGGAGAAATTTTTTTG+GGG | + | chr3_1:52908347-52908366 | Msa0362080:intron | 30.0% |
| !!! | TATGGGGGAGTTATTTTTTT+GGG | + | chr3_1:52908548-52908567 | Msa0362080:intron | 30.0% |
| !!! | TTTGGGTGTTGACTTTTTTA+TGG | + | chr3_1:52908565-52908584 | Msa0362080:intron | 30.0% |
| AGTCTGAATATGTTCTGTAT+TGG | + | chr3_1:52909045-52909064 | Msa0362080:intron | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | - | chr3_1:52909089-52909108 | None:intergenic | 30.0% | |
| TCTTCCTCTATTTGATCATA+GGG | + | chr3_1:52909414-52909433 | Msa0362080:intron | 30.0% | |
| GAACCAAGTTTCCATTTATT+TGG | + | chr3_1:52909438-52909457 | Msa0362080:CDS | 30.0% | |
| ! | GAATTTTGCTTTCTTCTGAA+GGG | + | chr3_1:52909517-52909536 | Msa0362080:CDS | 30.0% |
| ! | ATAATGGAAGAAAATGTGGT+CGG | + | chr3_1:52909701-52909720 | Msa0362080:CDS | 30.0% |
| AGCAGATACCAAATTATCTT+GGG | - | chr3_1:52909755-52909774 | None:intergenic | 30.0% | |
| TAGCAGATACCAAATTATCT+TGG | - | chr3_1:52909756-52909775 | None:intergenic | 30.0% | |
| ! | TTGGTATCTGCTATTTAACT+CGG | + | chr3_1:52909763-52909782 | Msa0362080:CDS | 30.0% |
| ATGTTTCGTGACCAAAAAAT+TGG | - | chr3_1:52909813-52909832 | None:intergenic | 30.0% | |
| GTCTTAATAGTTTCGAAAGA+GGG | - | chr3_1:52909888-52909907 | None:intergenic | 30.0% | |
| AGTCTTAATAGTTTCGAAAG+AGG | - | chr3_1:52909889-52909908 | None:intergenic | 30.0% | |
| AAATCTTAATCTCATTGGGT+GGG | - | chr3_1:52909989-52910008 | None:intergenic | 30.0% | |
| TAAATCTTAATCTCATTGGG+TGG | - | chr3_1:52909990-52910009 | None:intergenic | 30.0% | |
| AGATTCCAAAATCACACAAA+TGG | - | chr3_1:52910231-52910250 | None:intergenic | 30.0% | |
| AATGTCACTAAACTTTCTAC+TGG | + | chr3_1:52910399-52910418 | Msa0362080:intron | 30.0% | |
| ATGACTCATTAACTATGATC+AGG | + | chr3_1:52910483-52910502 | Msa0362080:intron | 30.0% | |
| AAATGGGAGAGAAAGAAAAT+TGG | - | chr3_1:52910540-52910559 | None:intergenic | 30.0% | |
| ATAAATATAAGTAGATGGGC+TGG | + | chr3_1:52910826-52910845 | Msa0362080:intron | 30.0% | |
| ! | TAAATATAAGTAGATGGGCT+GGG | + | chr3_1:52910827-52910846 | Msa0362080:intron | 30.0% |
| ATAATCGGATCATCATTCTT+GGG | + | chr3_1:52911131-52911150 | Msa0362080:exon | 30.0% | |
| !!! | ATTTGGTTTTTTCAGGTAGG+AGG | + | chr3_1:52904025-52904044 | Msa0362080:intron | 35.0% |
| ! | AACTTGGTGAAATATCTGCA+AGG | + | chr3_1:52904052-52904071 | Msa0362080:CDS | 35.0% |
| TCCTTCAGAAACATTCACTA+TGG | - | chr3_1:52904193-52904212 | None:intergenic | 35.0% | |
| ! | ATAGTGAATGTTTCTGAAGG+AGG | + | chr3_1:52904192-52904211 | Msa0362080:CDS | 35.0% |
| ! | TGTTTTCTTAACCAATGTCC+GGG | + | chr3_1:52904484-52904503 | Msa0362080:intron | 35.0% |
| CATGATCCTAAACCTTATGA+TGG | + | chr3_1:52904646-52904665 | Msa0362080:intron | 35.0% | |
| AAGCAACCATCATAAGGTTT+AGG | - | chr3_1:52904655-52904674 | None:intergenic | 35.0% | |
| GAAGAAAAGCAACCATCATA+AGG | - | chr3_1:52904661-52904680 | None:intergenic | 35.0% | |
| ! | AAGGTCAAAGGAGTACAATA+AGG | - | chr3_1:52904854-52904873 | None:intergenic | 35.0% |
| TATTGTACTCCTTTGACCTT+TGG | + | chr3_1:52904854-52904873 | Msa0362080:intron | 35.0% | |
| ATTGTACTCCTTTGACCTTT+GGG | + | chr3_1:52904855-52904874 | Msa0362080:intron | 35.0% | |
| ! | TTGGGATCAAAAGGAGTATA+AGG | - | chr3_1:52904926-52904945 | None:intergenic | 35.0% |
| !! | ATTAGGATTGATTTGGAGCT+GGG | - | chr3_1:52905099-52905118 | None:intergenic | 35.0% |
| GGTAGACATTAGGATTGATT+TGG | - | chr3_1:52905106-52905125 | None:intergenic | 35.0% | |
| ! | TTGAGCGAATTTTTGTATGG+TGG | + | chr3_1:52905182-52905201 | Msa0362080:intron | 35.0% |
| !! | TGGGTTGGTTCAAGAAAATT+TGG | - | chr3_1:52905316-52905335 | None:intergenic | 35.0% |
| !!! | TTTCAACCTATTTTGACCTC+AGG | - | chr3_1:52905645-52905664 | None:intergenic | 35.0% |
| ! | TGAAAAGTTTAGGTTCACAC+AGG | + | chr3_1:52905660-52905679 | Msa0362080:intron | 35.0% |
| ATTCATCTCGTAAAGTTCCT+AGG | + | chr3_1:52906001-52906020 | Msa0362080:intron | 35.0% | |
| GTCACAAGAGTTCGATAATT+AGG | - | chr3_1:52906108-52906127 | None:intergenic | 35.0% | |
| !! | AGGCACTTGTTGTAATTGTA+TGG | - | chr3_1:52906462-52906481 | None:intergenic | 35.0% |
| ! | AGTGATGATAGAGGTTGATT+TGG | - | chr3_1:52906735-52906754 | None:intergenic | 35.0% |
| TTGGGGAAATTAAGGAATGA+GGG | - | chr3_1:52907605-52907624 | None:intergenic | 35.0% | |
| TTTGGGGAAATTAAGGAATG+AGG | - | chr3_1:52907606-52907625 | None:intergenic | 35.0% | |
| TTGAAAAGGGTCGAAGAAAA+CGG | - | chr3_1:52907688-52907707 | None:intergenic | 35.0% | |
| !! | ATGGATCTGAGCATTGAAAA+GGG | - | chr3_1:52907701-52907720 | None:intergenic | 35.0% |
| !! | AATGGATCTGAGCATTGAAA+AGG | - | chr3_1:52907702-52907721 | None:intergenic | 35.0% |
| ! | CAGGTTTCTGAAGATCAAAA+AGG | + | chr3_1:52907754-52907773 | Msa0362080:intron | 35.0% |
| TCAACACGTTTCTTCACAAT+AGG | + | chr3_1:52907799-52907818 | Msa0362080:CDS | 35.0% | |
| CAATAGAAGAACACCAATGT+TGG | - | chr3_1:52907848-52907867 | None:intergenic | 35.0% | |
| TGACACATGGTGAGAAAAAT+AGG | - | chr3_1:52907907-52907926 | None:intergenic | 35.0% | |
| TTAGCTATGTTGCTATAGCA+TGG | + | chr3_1:52907947-52907966 | Msa0362080:CDS | 35.0% | |
| ! | TTCTGTGTTTCTGTTGTGTT+TGG | + | chr3_1:52908042-52908061 | Msa0362080:CDS | 35.0% |
| ! | TCTGTGTTTCTGTTGTGTTT+GGG | + | chr3_1:52908043-52908062 | Msa0362080:CDS | 35.0% |
| TCTTCCTGTATCGTTTAATC+AGG | + | chr3_1:52908083-52908102 | Msa0362080:CDS | 35.0% | |
| ATAACAACACCAGTAACAAC+AGG | - | chr3_1:52908201-52908220 | None:intergenic | 35.0% | |
| ! | TTGTGTATTGTTGGTAGGAA+TGG | + | chr3_1:52908318-52908337 | Msa0362080:intron | 35.0% |
| TGGTAGGAATGGTATATGAT+AGG | + | chr3_1:52908329-52908348 | Msa0362080:intron | 35.0% | |
| GGTAGGAATGGTATATGATA+GGG | + | chr3_1:52908330-52908349 | Msa0362080:intron | 35.0% | |
| GTAGGAATGGTATATGATAG+GGG | + | chr3_1:52908331-52908350 | Msa0362080:intron | 35.0% | |
| !!! | TAGGGGAGAAATTTTTTTGG+GGG | + | chr3_1:52908348-52908367 | Msa0362080:intron | 35.0% |
| !! | TTAGTGTATGCTTGGTTCTA+TGG | + | chr3_1:52908406-52908425 | Msa0362080:intron | 35.0% |
| TTGTGCATTGTTAATGGGAA+TGG | + | chr3_1:52908515-52908534 | Msa0362080:intron | 35.0% | |
| CATTGTTAATGGGAATGGTA+TGG | + | chr3_1:52908520-52908539 | Msa0362080:intron | 35.0% | |
| TTAATGGGAATGGTATGGTA+TGG | + | chr3_1:52908525-52908544 | Msa0362080:intron | 35.0% | |
| !!! | GTATGGGGGAGTTATTTTTT+TGG | + | chr3_1:52908547-52908566 | Msa0362080:intron | 35.0% |
| ! | GTTTGGGATGTGATTTCAAA+TGG | + | chr3_1:52908620-52908639 | Msa0362080:intron | 35.0% |
| ! | GTTGAGTCAACTTTGTCTTT+TGG | + | chr3_1:52908790-52908809 | Msa0362080:intron | 35.0% |
| !!! | AGGGAGTATTTGTTTTACCA+GGG | + | chr3_1:52909201-52909220 | Msa0362080:intron | 35.0% |
| TAAGAAGTAATATCATGCCC+TGG | - | chr3_1:52909221-52909240 | None:intergenic | 35.0% | |
| GTCTTCCTCTATTTGATCAT+AGG | + | chr3_1:52909413-52909432 | Msa0362080:intron | 35.0% | |
| TTCACCCTATGATCAAATAG+AGG | - | chr3_1:52909421-52909440 | None:intergenic | 35.0% | |
| !!! | TCCTTGTAGCACTGATTTTA+GGG | - | chr3_1:52909499-52909518 | None:intergenic | 35.0% |
| !!! | TTCCTTGTAGCACTGATTTT+AGG | - | chr3_1:52909500-52909519 | None:intergenic | 35.0% |
| ! | GGAATTTTGCTTTCTTCTGA+AGG | + | chr3_1:52909516-52909535 | Msa0362080:CDS | 35.0% |
| AATGAATCTCCTCCTTTACA+TGG | + | chr3_1:52909640-52909659 | Msa0362080:CDS | 35.0% | |
| TTCTTCCATTATAAGTGTGG+CGG | - | chr3_1:52909693-52909712 | None:intergenic | 35.0% | |
| !! | ATTGGTCAGGTTGACAAAAT+AGG | - | chr3_1:52909795-52909814 | None:intergenic | 35.0% |
| !!! | TGTCAACCTGACCAATTTTT+TGG | + | chr3_1:52909799-52909818 | Msa0362080:CDS | 35.0% |
| TCACAATATTAGCATGGTCT+TGG | + | chr3_1:52910159-52910178 | Msa0362080:intron | 35.0% | |
| AACTATGATCAGGATTTGTG+TGG | + | chr3_1:52910493-52910512 | Msa0362080:intron | 35.0% | |
| CATGTTAATTAACCATCCCA+AGG | - | chr3_1:52910640-52910659 | None:intergenic | 35.0% | |
| ! | TTTTCCTCTGCAAGAATGTT+AGG | + | chr3_1:52910759-52910778 | Msa0362080:intron | 35.0% |
| !! | CAAGAATGTTAGGCTTTGTT+TGG | + | chr3_1:52910769-52910788 | Msa0362080:intron | 35.0% |
| !! | AAATATAAGTAGATGGGCTG+GGG | + | chr3_1:52910828-52910847 | Msa0362080:intron | 35.0% |
| AGTACAAAATAGTACACAGC+TGG | - | chr3_1:52910855-52910874 | None:intergenic | 35.0% | |
| !! | TTATCCCTTTGTTCGCTTTT+TGG | - | chr3_1:52911115-52911134 | None:intergenic | 35.0% |
| AAAGCGAACAAAGGGATAAT+CGG | + | chr3_1:52911116-52911135 | Msa0362080:exon | 35.0% | |
| GATAATCGGATCATCATTCT+TGG | + | chr3_1:52911130-52911149 | Msa0362080:exon | 35.0% | |
| GAAATAGCTATGACAGTTGC+TGG | - | chr3_1:52903899-52903918 | None:intergenic | 40.0% | |
| ! | GCAACTGTCATAGCTATTTC+TGG | + | chr3_1:52903899-52903918 | Msa0362080:CDS | 40.0% |
| GAAGTAGTCAAATCAACCCA+TGG | - | chr3_1:52904132-52904151 | None:intergenic | 40.0% | |
| ! | GCCATAGTGAATGTTTCTGA+AGG | + | chr3_1:52904189-52904208 | Msa0362080:CDS | 40.0% |
| TTGGCCACTTGAAAAGGTTT+GGG | + | chr3_1:52904242-52904261 | Msa0362080:intron | 40.0% | |
| !! | GATTCCCAAACCTTTTCAAG+TGG | - | chr3_1:52904249-52904268 | None:intergenic | 40.0% |
| ! | AGTTTTCGCGTCATGTTAAC+CGG | - | chr3_1:52904514-52904533 | None:intergenic | 40.0% |
| AAAGTTGTCCCAAAGGTCAA+AGG | - | chr3_1:52904866-52904885 | None:intergenic | 40.0% | |
| AATGTGGGATGTATGCTACA+AGG | - | chr3_1:52904962-52904981 | None:intergenic | 40.0% | |
| !! | CATTAGGATTGATTTGGAGC+TGG | - | chr3_1:52905100-52905119 | None:intergenic | 40.0% |
| ! | CACTTTTCTATGTTCTCCTG+AGG | + | chr3_1:52905626-52905645 | Msa0362080:intron | 40.0% |
| TGTTCTCCTGAGGTCAAAAT+AGG | + | chr3_1:52905636-52905655 | Msa0362080:intron | 40.0% | |
| TTATCATCATCCCACGACTT+TGG | - | chr3_1:52905971-52905990 | None:intergenic | 40.0% | |
| AAGTCGTGGGATGATGATAA+TGG | + | chr3_1:52905971-52905990 | Msa0362080:intron | 40.0% | |
| GAGGAAGGTTAGATAATCCT+AGG | - | chr3_1:52906021-52906040 | None:intergenic | 40.0% | |
| TTTGAGGATGGTGTGAATGA+TGG | - | chr3_1:52907517-52907536 | None:intergenic | 40.0% | |
| GCATGGTATTCATCCAACAT+TGG | + | chr3_1:52907832-52907851 | Msa0362080:CDS | 40.0% | |
| ! | CTGGATCGAATAGTTTGCAT+AGG | - | chr3_1:52907985-52908004 | None:intergenic | 40.0% |
| CTATGCAAACTATTCGATCC+AGG | + | chr3_1:52907983-52908002 | Msa0362080:CDS | 40.0% | |
| ATCGCCTGATTAAACGATAC+AGG | - | chr3_1:52908090-52908109 | None:intergenic | 40.0% | |
| GTATCGTTTAATCAGGCGAT+TGG | + | chr3_1:52908090-52908109 | Msa0362080:CDS | 40.0% | |
| ACCAGTAACAACAGGAACAA+GGG | - | chr3_1:52908193-52908212 | None:intergenic | 40.0% | |
| !! | ACTGGTGTTGTTATTGCTAG+TGG | + | chr3_1:52908207-52908226 | Msa0362080:CDS | 40.0% |
| !! | CTGGTGTTGTTATTGCTAGT+GGG | + | chr3_1:52908208-52908227 | Msa0362080:CDS | 40.0% |
| !! | TGGTGTTGTTATTGCTAGTG+GGG | + | chr3_1:52908209-52908228 | Msa0362080:CDS | 40.0% |
| !!! | AGGGGAGAAATTTTTTTGGG+GGG | + | chr3_1:52908349-52908368 | Msa0362080:intron | 40.0% |
| GGAATGGTATGGTATGGTAT+GGG | + | chr3_1:52908531-52908550 | Msa0362080:intron | 40.0% | |
| GAATGGTATGGTATGGTATG+GGG | + | chr3_1:52908532-52908551 | Msa0362080:intron | 40.0% | |
| AATGGTATGGTATGGTATGG+GGG | + | chr3_1:52908533-52908552 | Msa0362080:intron | 40.0% | |
| ACTGTAGCATTGTAGTGTCA+AGG | + | chr3_1:52908964-52908983 | Msa0362080:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr3_1:52909182-52909201 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr3_1:52909181-52909200 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr3_1:52909181-52909200 | Msa0362080:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr3_1:52909182-52909201 | Msa0362080:intron | 40.0% | |
| GGTAAAACAAATACTCCCTC+CGG | - | chr3_1:52909200-52909219 | None:intergenic | 40.0% | |
| !!! | GAGGGAGTATTTGTTTTACC+AGG | + | chr3_1:52909200-52909219 | Msa0362080:intron | 40.0% |
| ! | TTGCTTTCTTCTGAAGGGTA+AGG | + | chr3_1:52909522-52909541 | Msa0362080:intron | 40.0% |
| TCTTCCATTATAAGTGTGGC+GGG | - | chr3_1:52909692-52909711 | None:intergenic | 40.0% | |
| GAGACGATCCCAAGATAATT+TGG | + | chr3_1:52909744-52909763 | Msa0362080:CDS | 40.0% | |
| TCGTGACCAAAAAATTGGTC+AGG | - | chr3_1:52909808-52909827 | None:intergenic | 40.0% | |
| ACAGTTGAGACTTACCTGAA+GGG | - | chr3_1:52909849-52909868 | None:intergenic | 40.0% | |
| AACAGTTGAGACTTACCTGA+AGG | - | chr3_1:52909850-52909869 | None:intergenic | 40.0% | |
| CAACAGATGAGAGAACTTGT+TGG | - | chr3_1:52910075-52910094 | None:intergenic | 40.0% | |
| CAACAAGTTCTCTCATCTGT+TGG | + | chr3_1:52910073-52910092 | Msa0362080:intron | 40.0% | |
| !! | TTCTCTCATCTGTTGGTAGT+TGG | + | chr3_1:52910080-52910099 | Msa0362080:intron | 40.0% |
| !! | TCTCTCATCTGTTGGTAGTT+GGG | + | chr3_1:52910081-52910100 | Msa0362080:intron | 40.0% |
| ! | GTAGTTGGGACATCAGATTT+TGG | + | chr3_1:52910095-52910114 | Msa0362080:intron | 40.0% |
| ! | TGCAGCCATTTGTGTGATTT+TGG | + | chr3_1:52910223-52910242 | Msa0362080:intron | 40.0% |
| TGGTTGAGTTCATAACTGAG+TGG | + | chr3_1:52910513-52910532 | Msa0362080:intron | 40.0% | |
| TTGCTGCATATGAATGACCT+TGG | + | chr3_1:52910620-52910639 | Msa0362080:intron | 40.0% | |
| TGCTGCATATGAATGACCTT+GGG | + | chr3_1:52910621-52910640 | Msa0362080:intron | 40.0% | |
| AAAGCCTAACATTCTTGCAG+AGG | - | chr3_1:52910766-52910785 | None:intergenic | 40.0% | |
| !! | TTGTTTGGCACTGGATGTTT+TGG | + | chr3_1:52910784-52910803 | Msa0362080:intron | 40.0% |
| TCATACCAGTGACTGAAACT+GGG | - | chr3_1:52911047-52911066 | None:intergenic | 40.0% | |
| ATCATACCAGTGACTGAAAC+TGG | - | chr3_1:52911048-52911067 | None:intergenic | 40.0% | |
| AGTTTCAGTCACTGGTATGA+TGG | + | chr3_1:52911047-52911066 | Msa0362080:CDS | 40.0% | |
| GTTTCAGTCACTGGTATGAT+GGG | + | chr3_1:52911048-52911067 | Msa0362080:CDS | 40.0% | |
| GAAGCCAAAAAGCGAACAAA+GGG | + | chr3_1:52911108-52911127 | Msa0362080:CDS | 40.0% | |
| AAATTCACCTCATGGAAGTG+AGG | - | chr3_1:52911209-52911228 | None:intergenic | 40.0% | |
| TCAGGTAGGAGGAAGAAACT+TGG | + | chr3_1:52904036-52904055 | Msa0362080:intron | 45.0% | |
| ATGAGATTGAGGGAGAGAGA+TGG | - | chr3_1:52904220-52904239 | None:intergenic | 45.0% | |
| ATCTCTCTCCCTCAATCTCA+TGG | + | chr3_1:52904219-52904238 | Msa0362080:CDS | 45.0% | |
| ! | TCATGGTTGGCCACTTGAAA+AGG | + | chr3_1:52904236-52904255 | Msa0362080:CDS | 45.0% |
| GTTGGCCACTTGAAAAGGTT+TGG | + | chr3_1:52904241-52904260 | Msa0362080:intron | 45.0% | |
| TGGGTCAAAAGTTGTCCCAA+AGG | - | chr3_1:52904873-52904892 | None:intergenic | 45.0% | |
| CCAACTACAATGAAGTGGGT+TGG | - | chr3_1:52905331-52905350 | None:intergenic | 45.0% | |
| CCAACCCACTTCATTGTAGT+TGG | + | chr3_1:52905328-52905347 | Msa0362080:intron | 45.0% | |
| TTAGGTTAGGCACAACTCTC+TGG | - | chr3_1:52905856-52905875 | None:intergenic | 45.0% | |
| CTCTCTCTCTCAATAGATGC+TGG | + | chr3_1:52907461-52907480 | Msa0362080:intron | 45.0% | |
| GGTGGGTCGAAATCGAATTA+AGG | - | chr3_1:52907559-52907578 | None:intergenic | 45.0% | |
| ATCTGTGAATCCATGGCTTG+GGG | - | chr3_1:52907631-52907650 | None:intergenic | 45.0% | |
| GATCTGTGAATCCATGGCTT+GGG | - | chr3_1:52907632-52907651 | None:intergenic | 45.0% | |
| GACTTTAACGGAACAAGCCA+TGG | - | chr3_1:52907654-52907673 | None:intergenic | 45.0% | |
| ! | CAATAGGTCTTGTAGCAGCA+TGG | + | chr3_1:52907815-52907834 | Msa0362080:CDS | 45.0% |
| ACACGCAGTCATATGACACA+TGG | - | chr3_1:52907920-52907939 | None:intergenic | 45.0% | |
| !! | TGACTTTTAAGAGGGAGGCT+TGG | + | chr3_1:52908154-52908173 | Msa0362080:CDS | 45.0% |
| ACCCTTGTTCCTGTTGTTAC+TGG | + | chr3_1:52908189-52908208 | Msa0362080:CDS | 45.0% | |
| CACCAGTAACAACAGGAACA+AGG | - | chr3_1:52908194-52908213 | None:intergenic | 45.0% | |
| !! | TTGGGGGGTTGACTTTTGTA+TGG | + | chr3_1:52908364-52908383 | Msa0362080:intron | 45.0% |
| GGGAATGGTATGGTATGGTA+TGG | + | chr3_1:52908530-52908549 | Msa0362080:intron | 45.0% | |
| GCATTGAATGATACTCCCTC+CGG | + | chr3_1:52909067-52909086 | Msa0362080:intron | 45.0% | |
| GCCCTAAAATCAGTGCTACA+AGG | + | chr3_1:52909495-52909514 | Msa0362080:CDS | 45.0% | |
| AGAAGGAAAACCACAGCCAT+TGG | - | chr3_1:52909668-52909687 | None:intergenic | 45.0% | |
| ! | TTATAAGTGTGGCGGGAAGA+AGG | - | chr3_1:52909685-52909704 | None:intergenic | 45.0% |
| TCTTCCCGCCACACTTATAA+TGG | + | chr3_1:52909685-52909704 | Msa0362080:CDS | 45.0% | |
| AAATGTGGTCGGAATCACGT+TGG | + | chr3_1:52909712-52909731 | Msa0362080:CDS | 45.0% | |
| ! | GTTGGGACATCAGATTTTGG+TGG | + | chr3_1:52910098-52910117 | Msa0362080:intron | 45.0% |
| GCATATGAATGACCTTGGGA+TGG | + | chr3_1:52910625-52910644 | Msa0362080:intron | 45.0% | |
| !! | TGTTAGGCTTTGTTTGGCAC+TGG | + | chr3_1:52910775-52910794 | Msa0362080:intron | 45.0% |
| ! | ATCCTAGAGCTGATTCCTAC+AGG | + | chr3_1:52910963-52910982 | Msa0362080:intron | 45.0% |
| TACCTGTAGGAATCAGCTCT+AGG | - | chr3_1:52910968-52910987 | None:intergenic | 45.0% | |
| ! | AGCTGATTCCTACAGGTACT+AGG | + | chr3_1:52910970-52910989 | Msa0362080:intron | 45.0% |
| ! | GCTGATTCCTACAGGTACTA+GGG | + | chr3_1:52910971-52910990 | Msa0362080:intron | 45.0% |
| TAGCATTCCCTAGTACCTGT+AGG | - | chr3_1:52910981-52911000 | None:intergenic | 45.0% | |
| CAGGTACTAGGGAATGCTAA+AGG | + | chr3_1:52910982-52911001 | Msa0362080:intron | 45.0% | |
| AGAAACCCAGTTTCAGTCAC+TGG | + | chr3_1:52911039-52911058 | Msa0362080:CDS | 45.0% | |
| !! | GTCACTGGTATGATGGGTTA+TGG | + | chr3_1:52911054-52911073 | Msa0362080:CDS | 45.0% |
| GGTTATGGACTCACAGTCTT+CGG | + | chr3_1:52911069-52911088 | Msa0362080:CDS | 45.0% | |
| CGAAGCCAAAAAGCGAACAA+AGG | + | chr3_1:52911107-52911126 | Msa0362080:CDS | 45.0% | |
| !!! | TTTTAAAAAAAAAAAACATA+AGG | + | chr3_1:52904355-52904374 | Msa0362080:intron | 5.0% |
| !! | ACAAAAAAAAAATAAAAAAA+TGG | - | chr3_1:52905721-52905740 | None:intergenic | 5.0% |
| !! | TAAAAAAATAATAAATCAAA+TGG | + | chr3_1:52906307-52906326 | Msa0362080:intron | 5.0% |
| !! | AAAAAAATAATAAATCAAAT+GGG | + | chr3_1:52906308-52906327 | Msa0362080:intron | 5.0% |
| !! | AAAATAAAAAAAAAGTTATA+GGG | - | chr3_1:52906406-52906425 | None:intergenic | 5.0% |
| !! | AAAAATAAAAAAAAAGTTAT+AGG | - | chr3_1:52906407-52906426 | None:intergenic | 5.0% |
| !!! | TTTTATAATCAATTTTATTT+TGG | + | chr3_1:52910438-52910457 | Msa0362080:intron | 5.0% |
| CTCTCCCTCAATCTCATGGT+TGG | + | chr3_1:52904223-52904242 | Msa0362080:CDS | 50.0% | |
| GTGGCCAACCATGAGATTGA+GGG | - | chr3_1:52904230-52904249 | None:intergenic | 50.0% | |
| AGTGGCCAACCATGAGATTG+AGG | - | chr3_1:52904231-52904250 | None:intergenic | 50.0% | |
| TAACCAATGTCCGGGAACAC+CGG | + | chr3_1:52904492-52904511 | Msa0362080:intron | 50.0% | |
| GTCATGTTAACCGGTGTTCC+CGG | - | chr3_1:52904505-52904524 | None:intergenic | 50.0% | |
| CAGCGGTAGTTAACTACCGT+CGG | + | chr3_1:52904727-52904746 | Msa0362080:intron | 50.0% | |
| CAGCGGTAGTTAACTACCGT+TGG | + | chr3_1:52904727-52904746 | Msa0362080:intron | 50.0% | |
| !! | AGGATTGATTTGGAGCTGGG+TGG | - | chr3_1:52905096-52905115 | None:intergenic | 50.0% |
| GTTAGGCACAACTCTCTGGA+CGG | - | chr3_1:52905852-52905871 | None:intergenic | 50.0% | |
| AGAAGAACGAGGTGAGTGGT+GGG | - | chr3_1:52907576-52907595 | None:intergenic | 50.0% | |
| AGACAGAAGAACGAGGTGAG+TGG | - | chr3_1:52907580-52907599 | None:intergenic | 50.0% | |
| TGGGGGGTTTGGGGAAATTA+AGG | - | chr3_1:52907613-52907632 | None:intergenic | 50.0% | |
| ! | TCTGTGAATCCATGGCTTGG+GGG | - | chr3_1:52907630-52907649 | None:intergenic | 50.0% |
| GGATCTGTGAATCCATGGCT+TGG | - | chr3_1:52907633-52907652 | None:intergenic | 50.0% | |
| GCCATGGATTCACAGATCCA+TGG | + | chr3_1:52907634-52907653 | Msa0362080:intron | 50.0% | |
| GCCATGGATCTGTGAATCCA+TGG | - | chr3_1:52907638-52907657 | None:intergenic | 50.0% | |
| CCATTGGAGCCATGTAAAGG+AGG | - | chr3_1:52909652-52909671 | None:intergenic | 50.0% | |
| CCTCCTTTACATGGCTCCAA+TGG | + | chr3_1:52909649-52909668 | Msa0362080:CDS | 50.0% | |
| CAGCCATTGGAGCCATGTAA+AGG | - | chr3_1:52909655-52909674 | None:intergenic | 50.0% | |
| TTACATGGCTCCAATGGCTG+TGG | + | chr3_1:52909655-52909674 | Msa0362080:CDS | 50.0% | |
| CAGACAACCTCACTTCCATG+AGG | + | chr3_1:52911199-52911218 | Msa0362080:three_prime_UTR | 50.0% | |
| TAACCGGTGTTCCCGGACAT+TGG | - | chr3_1:52904498-52904517 | None:intergenic | 55.0% | |
| CGACGGTAGTTAACTACCGC+TGG | - | chr3_1:52904729-52904748 | None:intergenic | 55.0% | |
| CAGAAGAACGAGGTGAGTGG+TGG | - | chr3_1:52907577-52907596 | None:intergenic | 55.0% | |
| GAGGGAGAGACAGAAGAACG+AGG | - | chr3_1:52907587-52907606 | None:intergenic | 55.0% | |
| ! | ATCCATGGCTTGGGGGGTTT+GGG | - | chr3_1:52907623-52907642 | None:intergenic | 55.0% |
| ! | AATCCATGGCTTGGGGGGTT+TGG | - | chr3_1:52907624-52907643 | None:intergenic | 55.0% |
| ! | CTGTGAATCCATGGCTTGGG+GGG | - | chr3_1:52907629-52907648 | None:intergenic | 55.0% |
| TACCAGTGCTCTGACCCTTC+AGG | + | chr3_1:52909832-52909851 | Msa0362080:CDS | 55.0% | |
| TACCTGAAGGGTCAGAGCAC+TGG | - | chr3_1:52909837-52909856 | None:intergenic | 55.0% | |
| ! | TCCATGGCTTGGGGGGTTTG+GGG | - | chr3_1:52907622-52907641 | None:intergenic | 60.0% |
| TCCCCAAACCCCCCAAGCCA+TGG | + | chr3_1:52907618-52907637 | Msa0362080:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 52903872 | 52911234 | 52903872 | ID=Msa0362080;Name=Msa0362080 |
| chr3_1 | mRNA | 52903872 | 52911234 | 52903872 | ID=Msa0362080-mRNA-1;Parent=Msa0362080;Name=Msa0362080-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.8|0.83|1|1|1|6|100|407 |
| chr3_1 | exon | 52903872 | 52903920 | 52903872 | ID=Msa0362080-mRNA-1:exon:9583;Parent=Msa0362080-mRNA-1 |
| chr3_1 | exon | 52904040 | 52904257 | 52904040 | ID=Msa0362080-mRNA-1:exon:9584;Parent=Msa0362080-mRNA-1 |
| chr3_1 | exon | 52907757 | 52908230 | 52907757 | ID=Msa0362080-mRNA-1:exon:9585;Parent=Msa0362080-mRNA-1 |
| chr3_1 | exon | 52909435 | 52909538 | 52909435 | ID=Msa0362080-mRNA-1:exon:9586;Parent=Msa0362080-mRNA-1 |
| chr3_1 | exon | 52909625 | 52909853 | 52909625 | ID=Msa0362080-mRNA-1:exon:9587;Parent=Msa0362080-mRNA-1 |
| chr3_1 | exon | 52910985 | 52911234 | 52910985 | ID=Msa0362080-mRNA-1:exon:9588;Parent=Msa0362080-mRNA-1 |
| chr3_1 | CDS | 52903872 | 52903920 | 52903872 | ID=Msa0362080-mRNA-1:cds;Parent=Msa0362080-mRNA-1 |
| chr3_1 | CDS | 52904040 | 52904257 | 52904040 | ID=Msa0362080-mRNA-1:cds;Parent=Msa0362080-mRNA-1 |
| chr3_1 | CDS | 52907757 | 52908230 | 52907757 | ID=Msa0362080-mRNA-1:cds;Parent=Msa0362080-mRNA-1 |
| chr3_1 | CDS | 52909435 | 52909538 | 52909435 | ID=Msa0362080-mRNA-1:cds;Parent=Msa0362080-mRNA-1 |
| chr3_1 | CDS | 52909625 | 52909853 | 52909625 | ID=Msa0362080-mRNA-1:cds;Parent=Msa0362080-mRNA-1 |
| chr3_1 | CDS | 52910985 | 52911134 | 52910985 | ID=Msa0362080-mRNA-1:cds;Parent=Msa0362080-mRNA-1 |
| chr3_1 | three_prime_UTR | 52911135 | 52911234 | 52911135 | ID=Msa0362080-mRNA-1:three_prime_utr;Parent=Msa0362080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
