Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383500 | XP_003600842.2 | 96.088 | 409 | 14 | 1 | 1 | 407 | 1 | 409 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383500 | sp|Q5XF09|PT311_ARATH | 90.820 | 305 | 28 | 0 | 102 | 406 | 4 | 308 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383500 | A0A1S2YES8 | 86.441 | 413 | 40 | 7 | 1 | 406 | 1 | 404 | 0.0 | 663 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013040 | Msa1383500 | 0.802476 | 5.510732e-49 | -8.615850e-47 |
| Msa0037180 | Msa1383500 | 0.811576 | 6.532483e-51 | -8.615850e-47 |
| Msa0050320 | Msa1383500 | -0.822382 | 2.440814e-53 | -8.615850e-47 |
| Msa0062010 | Msa1383500 | 0.811399 | 7.137049e-51 | -8.615850e-47 |
| Msa0063540 | Msa1383500 | 0.807542 | 4.803726e-50 | -8.615850e-47 |
| Msa0073270 | Msa1383500 | 0.808475 | 3.040835e-50 | -8.615850e-47 |
| Msa0092220 | Msa1383500 | 0.812769 | 3.588350e-51 | -8.615850e-47 |
| Msa1373990 | Msa1383500 | 0.807405 | 5.137708e-50 | -8.615850e-47 |
| Msa1380740 | Msa1383500 | 0.803469 | 3.434766e-49 | -8.615850e-47 |
| Msa1383500 | Msa1384410 | -0.808418 | 3.128100e-50 | -8.615850e-47 |
| Msa1383500 | Msa1402300 | 0.800339 | 1.509919e-48 | -8.615850e-47 |
| Msa1383500 | Msa1413020 | 0.808109 | 3.639373e-50 | -8.615850e-47 |
| Msa0620080 | Msa1383500 | 0.809885 | 1.516704e-50 | -8.615850e-47 |
| Msa0655970 | Msa1383500 | 0.807837 | 4.158479e-50 | -8.615850e-47 |
| Msa0659020 | Msa1383500 | -0.810796 | 9.647588e-51 | -8.615850e-47 |
| Msa0672950 | Msa1383500 | 0.802356 | 5.831547e-49 | -8.615850e-47 |
| Msa0687220 | Msa1383500 | 0.812422 | 4.273357e-51 | -8.615850e-47 |
| Msa0713290 | Msa1383500 | 0.802484 | 5.487908e-49 | -8.615850e-47 |
| Msa0715350 | Msa1383500 | 0.802971 | 4.355477e-49 | -8.615850e-47 |
| Msa0755010 | Msa1383500 | 0.806134 | 9.531552e-50 | -8.615850e-47 |
| Msa0789220 | Msa1383500 | 0.813511 | 2.467194e-51 | -8.615850e-47 |
| Msa0789340 | Msa1383500 | 0.803959 | 2.717335e-49 | -8.615850e-47 |
| Msa0804170 | Msa1383500 | 0.807096 | 5.971135e-50 | -8.615850e-47 |
| Msa0146210 | Msa1383500 | 0.809263 | 2.063036e-50 | -8.615850e-47 |
| Msa0154720 | Msa1383500 | -0.819097 | 1.388905e-52 | -8.615850e-47 |
| Msa0196260 | Msa1383500 | 0.812031 | 5.202049e-51 | -8.615850e-47 |
| Msa0225070 | Msa1383500 | -0.823427 | 1.393582e-53 | -8.615850e-47 |
| Msa0236940 | Msa1383500 | 0.846647 | 1.904279e-59 | -8.615850e-47 |
| Msa0238110 | Msa1383500 | 0.814860 | 1.242467e-51 | -8.615850e-47 |
| Msa1297220 | Msa1383500 | -0.803670 | 3.121086e-49 | -8.615850e-47 |
| Msa1323260 | Msa1383500 | -0.808864 | 2.512119e-50 | -8.615850e-47 |
| Msa1342360 | Msa1383500 | -0.806903 | 6.561222e-50 | -8.615850e-47 |
| Msa1343450 | Msa1383500 | -0.803127 | 4.043665e-49 | -8.615850e-47 |
| Msa0379480 | Msa1383500 | 0.807238 | 5.572151e-50 | -8.615850e-47 |
| Msa0403740 | Msa1383500 | -0.805039 | 1.618146e-49 | -8.615850e-47 |
| Msa0412580 | Msa1383500 | -0.800584 | 1.345827e-48 | -8.615850e-47 |
| Msa0416340 | Msa1383500 | 0.994123 | 9.446213e-205 | -8.615850e-47 |
| Msa0456450 | Msa1383500 | -0.808181 | 3.514138e-50 | -8.615850e-47 |
| Msa0457070 | Msa1383500 | -0.816254 | 6.080358e-52 | -8.615850e-47 |
| Msa0475330 | Msa1383500 | 0.809000 | 2.348995e-50 | -8.615850e-47 |
| Msa1024570 | Msa1383500 | 0.801240 | 9.884691e-49 | -8.615850e-47 |
| Msa1069710 | Msa1383500 | 0.801167 | 1.023010e-48 | -8.615850e-47 |
| Msa1093190 | Msa1383500 | -0.805778 | 1.132833e-49 | -8.615850e-47 |
| Msa0266140 | Msa1383500 | -0.808631 | 2.817371e-50 | -8.615850e-47 |
| Msa0290800 | Msa1383500 | 0.807693 | 4.461979e-50 | -8.615850e-47 |
| Msa0328870 | Msa1383500 | 0.803500 | 3.385103e-49 | -8.615850e-47 |
| Msa0362080 | Msa1383500 | 0.898333 | 5.880997e-77 | -8.615850e-47 |
| Msa0364030 | Msa1383500 | -0.804715 | 1.890694e-49 | -8.615850e-47 |
| Msa1170320 | Msa1383500 | 0.802762 | 4.810075e-49 | -8.615850e-47 |
| Msa1179340 | Msa1383500 | 0.805037 | 1.619901e-49 | -8.615850e-47 |
| Msa1205270 | Msa1383500 | -0.804725 | 1.881997e-49 | -8.615850e-47 |
| Msa0484410 | Msa1383500 | 0.803807 | 2.922537e-49 | -8.615850e-47 |
| Msa0508560 | Msa1383500 | 0.893585 | 5.482587e-75 | -8.615850e-47 |
| Msa0580730 | Msa1383500 | 0.808574 | 2.896515e-50 | -8.615850e-47 |
| Msa0584370 | Msa1383500 | 0.811470 | 6.890185e-51 | -8.615850e-47 |
| Msa0587870 | Msa1383500 | 0.815406 | 9.397421e-52 | -8.615850e-47 |
| Msa0869660 | Msa1383500 | 0.802269 | 6.078655e-49 | -8.615850e-47 |
| Msa0898830 | Msa1383500 | -0.834748 | 2.505090e-56 | -8.615850e-47 |
| Msa0932140 | Msa1383500 | 0.802518 | 5.400145e-49 | -8.615850e-47 |
| Msa0932150 | Msa1383500 | 0.822656 | 2.107377e-53 | -8.615850e-47 |
| Msa0940780 | Msa1383500 | 0.824948 | 6.121384e-54 | -8.615850e-47 |
| Msa0967900 | Msa1383500 | -0.814289 | 1.662063e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383500 | MtrunA17_Chr3g0112981 | 98.131 | 321 | 6 | 0 | 87 | 407 | 3 | 323 | 0.0 | 633 |
| Msa1383500 | MtrunA17_Chr5g0436341 | 90.759 | 303 | 28 | 0 | 104 | 406 | 4 | 306 | 0.0 | 562 |
| Msa1383500 | MtrunA17_Chr4g0008071 | 74.662 | 296 | 75 | 0 | 109 | 404 | 13 | 308 | 3.63e-162 | 458 |
| Msa1383500 | MtrunA17_Chr8g0382081 | 72.575 | 299 | 82 | 0 | 108 | 406 | 11 | 309 | 1.24e-156 | 444 |
| Msa1383500 | MtrunA17_Chr4g0056661 | 68.243 | 296 | 94 | 0 | 112 | 407 | 56 | 351 | 6.33e-137 | 395 |
| Msa1383500 | MtrunA17_Chr3g0103641 | 82.390 | 159 | 28 | 0 | 248 | 406 | 3 | 161 | 4.58e-93 | 276 |
| Msa1383500 | MtrunA17_Chr3g0103631 | 73.457 | 162 | 43 | 0 | 100 | 261 | 1 | 162 | 2.07e-84 | 254 |
| Msa1383500 | MtrunA17_Chr3g0114581 | 33.447 | 293 | 189 | 4 | 113 | 403 | 19 | 307 | 2.35e-49 | 170 |
| Msa1383500 | MtrunA17_Chr1g0160071 | 33.106 | 293 | 190 | 4 | 113 | 403 | 18 | 306 | 9.09e-49 | 169 |
| Msa1383500 | MtrunA17_Chr2g0307091 | 32.653 | 294 | 188 | 4 | 113 | 402 | 18 | 305 | 1.26e-35 | 134 |
| Msa1383500 | MtrunA17_Chr3g0137921 | 29.392 | 296 | 195 | 5 | 113 | 402 | 22 | 309 | 2.16e-29 | 117 |
| Msa1383500 | MtrunA17_Chr7g0270591 | 31.379 | 290 | 183 | 5 | 122 | 404 | 28 | 308 | 4.77e-28 | 114 |
| Msa1383500 | MtrunA17_Chr4g0063601 | 30.769 | 299 | 159 | 8 | 113 | 402 | 18 | 277 | 2.40e-23 | 99.8 |
| Msa1383500 | MtrunA17_Chr4g0069261 | 29.617 | 287 | 192 | 4 | 122 | 404 | 24 | 304 | 4.45e-22 | 97.1 |
| Msa1383500 | MtrunA17_Chr2g0312911 | 24.662 | 296 | 203 | 6 | 122 | 407 | 24 | 309 | 7.22e-21 | 92.8 |
| Msa1383500 | MtrunA17_Chr4g0058971 | 28.094 | 299 | 199 | 8 | 112 | 403 | 88 | 377 | 1.82e-19 | 89.4 |
| Msa1383500 | MtrunA17_Chr3g0097931 | 22.741 | 321 | 235 | 8 | 88 | 403 | 89 | 401 | 9.61e-17 | 81.6 |
| Msa1383500 | MtrunA17_Chr3g0117501 | 25.740 | 338 | 231 | 7 | 70 | 403 | 81 | 402 | 7.82e-16 | 79.0 |
| Msa1383500 | MtrunA17_Chr8g0341861 | 24.150 | 294 | 205 | 8 | 109 | 390 | 169 | 456 | 1.27e-15 | 78.6 |
| Msa1383500 | MtrunA17_Chr6g0449891 | 27.812 | 320 | 221 | 6 | 90 | 403 | 93 | 408 | 2.02e-15 | 77.4 |
| Msa1383500 | MtrunA17_Chr2g0288011 | 22.807 | 342 | 240 | 10 | 70 | 404 | 72 | 396 | 9.85e-15 | 75.5 |
| Msa1383500 | MtrunA17_Chr4g0046561 | 27.184 | 309 | 194 | 11 | 116 | 407 | 106 | 400 | 2.90e-14 | 73.9 |
| Msa1383500 | MtrunA17_Chr2g0326791 | 25.080 | 311 | 206 | 7 | 108 | 404 | 7 | 304 | 4.16e-14 | 73.2 |
| Msa1383500 | MtrunA17_Chr5g0419001 | 25.649 | 308 | 193 | 11 | 116 | 404 | 111 | 401 | 2.13e-13 | 71.2 |
| Msa1383500 | MtrunA17_Chr4g0074541 | 22.601 | 323 | 232 | 9 | 86 | 403 | 83 | 392 | 2.37e-13 | 71.2 |
| Msa1383500 | MtrunA17_Chr2g0298931 | 27.402 | 281 | 166 | 12 | 121 | 384 | 67 | 326 | 4.91e-13 | 70.1 |
| Msa1383500 | MtrunA17_Chr4g0028931 | 25.397 | 315 | 207 | 7 | 103 | 404 | 5 | 304 | 5.22e-13 | 69.7 |
| Msa1383500 | MtrunA17_Chr2g0291851 | 24.771 | 327 | 233 | 10 | 80 | 400 | 73 | 392 | 1.15e-12 | 68.9 |
| Msa1383500 | MtrunA17_Chr6g0467391 | 25.080 | 311 | 202 | 8 | 110 | 404 | 9 | 304 | 3.28e-12 | 67.0 |
| Msa1383500 | MtrunA17_Chr6g0467371 | 25.080 | 311 | 202 | 8 | 110 | 404 | 9 | 304 | 3.28e-12 | 67.0 |
| Msa1383500 | MtrunA17_Chr3g0129401 | 23.448 | 290 | 214 | 3 | 119 | 407 | 24 | 306 | 2.87e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1383500 | AT3G11320.1 | 90.820 | 305 | 28 | 0 | 102 | 406 | 4 | 308 | 0.0 | 567 |
| Msa1383500 | AT5G05820.1 | 88.961 | 308 | 33 | 1 | 100 | 406 | 1 | 308 | 0.0 | 556 |
| Msa1383500 | AT3G10290.1 | 66.873 | 323 | 104 | 1 | 87 | 406 | 33 | 355 | 1.31e-155 | 443 |
| Msa1383500 | AT5G04160.1 | 71.186 | 295 | 85 | 0 | 112 | 406 | 15 | 309 | 6.54e-155 | 440 |
| Msa1383500 | AT1G12500.1 | 65.347 | 303 | 105 | 0 | 104 | 406 | 54 | 356 | 1.09e-137 | 398 |
| Msa1383500 | AT1G21870.1 | 35.667 | 300 | 187 | 5 | 105 | 402 | 11 | 306 | 5.79e-52 | 177 |
| Msa1383500 | AT1G77610.1 | 33.904 | 292 | 189 | 3 | 113 | 403 | 13 | 301 | 1.12e-49 | 171 |
| Msa1383500 | AT5G25400.1 | 31.419 | 296 | 189 | 5 | 113 | 402 | 22 | 309 | 4.08e-32 | 124 |
| Msa1383500 | AT5G11230.1 | 31.757 | 296 | 188 | 5 | 113 | 402 | 22 | 309 | 3.08e-31 | 122 |
| Msa1383500 | AT4G32390.1 | 31.081 | 296 | 190 | 5 | 113 | 402 | 22 | 309 | 3.29e-29 | 117 |
| Msa1383500 | AT2G25520.1 | 31.081 | 296 | 190 | 5 | 113 | 402 | 22 | 309 | 2.94e-28 | 114 |
| Msa1383500 | AT3G17430.2 | 30.314 | 287 | 190 | 4 | 122 | 404 | 25 | 305 | 1.34e-25 | 107 |
| Msa1383500 | AT3G17430.1 | 30.314 | 287 | 190 | 4 | 122 | 404 | 25 | 305 | 1.34e-25 | 107 |
| Msa1383500 | AT1G53660.1 | 26.042 | 288 | 200 | 5 | 122 | 404 | 30 | 309 | 3.15e-22 | 97.1 |
| Msa1383500 | AT1G53660.3 | 26.042 | 288 | 200 | 5 | 122 | 404 | 48 | 327 | 5.83e-22 | 96.7 |
| Msa1383500 | AT1G48230.1 | 30.584 | 291 | 184 | 6 | 122 | 404 | 25 | 305 | 8.67e-22 | 96.3 |
| Msa1383500 | AT1G53660.4 | 25.735 | 272 | 191 | 4 | 136 | 404 | 12 | 275 | 8.11e-21 | 92.4 |
| Msa1383500 | AT3G14410.1 | 25.723 | 311 | 213 | 5 | 106 | 407 | 12 | 313 | 1.01e-20 | 92.8 |
| Msa1383500 | AT5G54800.1 | 23.659 | 317 | 226 | 8 | 93 | 402 | 80 | 387 | 6.33e-18 | 85.5 |
| Msa1383500 | AT1G53660.5 | 26.457 | 223 | 154 | 3 | 184 | 404 | 1 | 215 | 3.34e-17 | 80.9 |
| Msa1383500 | AT3G01550.1 | 26.875 | 320 | 223 | 6 | 90 | 403 | 59 | 373 | 4.90e-17 | 82.8 |
| Msa1383500 | AT5G17630.1 | 25.839 | 298 | 205 | 10 | 116 | 406 | 119 | 407 | 1.31e-16 | 81.6 |
| Msa1383500 | AT1G61800.1 | 21.835 | 316 | 227 | 8 | 93 | 403 | 88 | 388 | 1.13e-15 | 78.6 |
| Msa1383500 | AT1G61800.2 | 21.698 | 318 | 229 | 8 | 93 | 405 | 88 | 390 | 1.50e-15 | 78.2 |
| Msa1383500 | AT1G48230.2 | 30.435 | 230 | 144 | 5 | 181 | 404 | 13 | 232 | 3.87e-15 | 75.9 |
| Msa1383500 | AT5G33320.1 | 26.299 | 308 | 212 | 6 | 102 | 402 | 100 | 399 | 4.36e-14 | 73.9 |
| Msa1383500 | AT3G01550.2 | 26.250 | 320 | 220 | 7 | 90 | 403 | 59 | 368 | 5.42e-14 | 73.6 |
| Msa1383500 | AT5G57100.1 | 26.027 | 292 | 193 | 10 | 121 | 404 | 76 | 352 | 6.27e-14 | 73.2 |
| Msa1383500 | AT5G46110.4 | 27.425 | 299 | 197 | 10 | 116 | 406 | 115 | 401 | 1.13e-13 | 72.8 |
| Msa1383500 | AT5G46110.1 | 27.425 | 299 | 197 | 10 | 116 | 406 | 115 | 401 | 1.39e-13 | 72.4 |
| Msa1383500 | AT5G46110.2 | 27.425 | 299 | 197 | 10 | 116 | 406 | 2 | 288 | 1.75e-13 | 71.2 |
| Msa1383500 | AT1G06470.4 | 23.100 | 329 | 231 | 7 | 95 | 407 | 61 | 383 | 3.30e-13 | 71.2 |
| Msa1383500 | AT1G06470.2 | 23.100 | 329 | 231 | 7 | 95 | 407 | 61 | 383 | 3.30e-13 | 71.2 |
| Msa1383500 | AT1G06470.1 | 23.100 | 329 | 231 | 7 | 95 | 407 | 61 | 383 | 3.30e-13 | 71.2 |
| Msa1383500 | AT1G06470.3 | 23.100 | 329 | 231 | 7 | 95 | 407 | 61 | 383 | 3.30e-13 | 71.2 |
| Msa1383500 | AT2G28315.1 | 22.896 | 297 | 211 | 6 | 110 | 399 | 9 | 294 | 1.35e-11 | 65.9 |
| Msa1383500 | AT1G53660.2 | 25.843 | 178 | 129 | 2 | 122 | 296 | 48 | 225 | 1.53e-11 | 64.7 |
| Msa1383500 | AT5G57100.2 | 28.947 | 190 | 118 | 8 | 121 | 303 | 76 | 255 | 2.74e-11 | 64.7 |
| Msa1383500 | AT4G09810.1 | 23.490 | 298 | 217 | 4 | 114 | 407 | 16 | 306 | 3.46e-11 | 64.7 |
| Msa1383500 | AT2G28315.2 | 22.896 | 297 | 211 | 6 | 110 | 399 | 9 | 294 | 7.36e-11 | 63.5 |
| Msa1383500 | AT5G55950.1 | 26.937 | 271 | 161 | 9 | 121 | 376 | 69 | 317 | 8.71e-11 | 63.5 |
| Msa1383500 | AT5G55950.4 | 27.778 | 270 | 160 | 9 | 121 | 376 | 9 | 257 | 9.90e-11 | 63.2 |
Find 99 sgRNAs with CRISPR-Local
Find 433 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCAAGTTTCCATTTATT+TGG | 0.112862 | tig0020598:+125441 | Msa1383500:CDS |
| TTTCTCTACTTAAGCATTTC+AGG | 0.137935 | tig0020598:+127396 | Msa1383500:three_prime_UTR |
| ACCCTTGTTCCTGTTGTTAC+TGG | 0.191940 | tig0020598:+124213 | Msa1383500:CDS |
| CAATATCACCACATATTAAT+TGG | 0.248203 | tig0020598:+120006 | Msa1383500:CDS |
| AAACTGGGTTTCTAAATATT+AGG | 0.258669 | tig0020598:-127033 | None:intergenic |
| ATACAATGAATCCAAATAAA+TGG | 0.258981 | tig0020598:-125452 | None:intergenic |
| TCTTCCCGCCACACTTATAA+TGG | 0.261442 | tig0020598:+125688 | Msa1383500:CDS |
| ATCATACCAGTGACTGAAAC+TGG | 0.266685 | tig0020598:-127049 | None:intergenic |
| TTCTGTGTTTCTGTTGTGTT+TGG | 0.269088 | tig0020598:+124066 | Msa1383500:CDS |
| TGAGGAAAGAGTTGTAAAAT+TGG | 0.290756 | tig0020598:+127453 | Msa1383500:three_prime_UTR |
| GAGACGATCCCAAGATAATT+TGG | 0.307870 | tig0020598:+125747 | Msa1383500:CDS |
| ATTGGTCAGGTTGACAAAAT+AGG | 0.310667 | tig0020598:-125795 | None:intergenic |
| AAGTATTTGTTGAGCAACTA+TGG | 0.329770 | tig0020598:+123895 | Msa1383500:CDS |
| TCATCAAATTATTATTCATA+TGG | 0.349278 | tig0020598:+120068 | Msa1383500:CDS |
| GCAACTGTCATATCTATTAC+TGG | 0.364395 | tig0020598:+119817 | Msa1383500:CDS |
| TCTTCCTGTATCGTTTAATC+AGG | 0.373216 | tig0020598:+124107 | Msa1383500:CDS |
| TAGCAGATACCAAATTATCT+TGG | 0.373919 | tig0020598:-125756 | None:intergenic |
| GATAATCGGATCATCATTCT+TGG | 0.383960 | tig0020598:+127134 | Msa1383500:exon |
| GTCACTGGTATGATGGGTTA+TGG | 0.398626 | tig0020598:+127058 | Msa1383500:CDS |
| TCAACACGTTTCTTCACAAT+AGG | 0.398972 | tig0020598:+123823 | Msa1383500:CDS |
| AAAGCGAACAAAGGGATAAT+CGG | 0.420587 | tig0020598:+127120 | Msa1383500:exon |
| CAGGTTTCTGAAGATCAAAA+AGG | 0.421249 | tig0020598:+123778 | Msa1383500:intron |
| TACCAGTGCTCTGACCCTTC+AGG | 0.423819 | tig0020598:+125835 | Msa1383500:CDS |
| GTAATAGATATGACAGTTGC+TGG | 0.425060 | tig0020598:-119814 | None:intergenic |
| AGTTTCAGTCACTGGTATGA+TGG | 0.426605 | tig0020598:+127051 | Msa1383500:CDS |
| TCTGTGTTTCTGTTGTGTTT+GGG | 0.427601 | tig0020598:+124067 | Msa1383500:CDS |
| AGCTGATTCCTACAGGTACT+AGG | 0.431361 | tig0020598:+126974 | Msa1383500:intron |
| CTGGTGTTGTTATTGCTAGT+GGG | 0.433213 | tig0020598:+124232 | Msa1383500:CDS |
| TCATGGTTGGCCACTTGAAA+AGG | 0.435118 | tig0020598:+120154 | Msa1383500:CDS |
| AGAGTCAAAGATTCAGAGTC+TGG | 0.446988 | tig0020598:-127250 | None:intergenic |
| ACATAGAAAGCCTCATTGAA+TGG | 0.448150 | tig0020598:+127295 | Msa1383500:three_prime_UTR |
| TCCTTCAGAAACATTCACTA+TGG | 0.451405 | tig0020598:-120108 | None:intergenic |
| GGTTATGGACTCACAGTCTT+CGG | 0.464078 | tig0020598:+127073 | Msa1383500:CDS |
| GATCTTAAAGAATTGAATCC+TGG | 0.465525 | tig0020598:-124025 | None:intergenic |
| TCGTGGATTTGCATCTTCAA+TGG | 0.465831 | tig0020598:+119771 | Msa1383500:exon |
| AGAAACCCAGTTTCAGTCAC+TGG | 0.466134 | tig0020598:+127043 | Msa1383500:CDS |
| CCTCCTTTACATGGCTCCAA+TGG | 0.467277 | tig0020598:+125652 | Msa1383500:CDS |
| AATGAATCTCCTCCTTTACA+TGG | 0.468540 | tig0020598:+125643 | Msa1383500:CDS |
| AGCAGATACCAAATTATCTT+GGG | 0.471217 | tig0020598:-125755 | None:intergenic |
| TTACATGGCTCCAATGGCTG+TGG | 0.474205 | tig0020598:+125658 | Msa1383500:CDS |
| TGAATATTCCAATTAATATG+TGG | 0.481321 | tig0020598:-120014 | None:intergenic |
| CTCTCCCTCAATCTCATGGT+TGG | 0.484941 | tig0020598:+120141 | Msa1383500:CDS |
| TACCTGAAGGGTCAGAGCAC+TGG | 0.484949 | tig0020598:-125837 | None:intergenic |
| AGAAGGAAAACCACAGCCAT+TGG | 0.484967 | tig0020598:-125668 | None:intergenic |
| CTATGCAAACTATTCGATCC+AGG | 0.487712 | tig0020598:+124007 | Msa1383500:CDS |
| ATCTCTCTCCCTCAATCTCA+TGG | 0.488796 | tig0020598:+120137 | Msa1383500:CDS |
| TTCAATGAGGCTTTCTATGT+GGG | 0.497593 | tig0020598:-127292 | None:intergenic |
| AATCCAAATAAATGGAAACT+TGG | 0.501652 | tig0020598:-125444 | None:intergenic |
| AAAAGGTTCTAAGACAATGA+AGG | 0.505897 | tig0020598:+123795 | Msa1383500:CDS |
| ATATTCAAAGGCATATTCCA+TGG | 0.507241 | tig0020598:+120030 | Msa1383500:CDS |
| ATAACAACACCAGTAACAAC+AGG | 0.507549 | tig0020598:-124222 | None:intergenic |
| ACTGGTGTTGTTATTGCTAG+TGG | 0.510277 | tig0020598:+124231 | Msa1383500:CDS |
| ATCGCCTGATTAAACGATAC+AGG | 0.511296 | tig0020598:-124111 | None:intergenic |
| CATAGAAAGCCTCATTGAAT+GGG | 0.511830 | tig0020598:+127296 | Msa1383500:three_prime_UTR |
| TTATAAGTGTGGCGGGAAGA+AGG | 0.513711 | tig0020598:-125685 | None:intergenic |
| CACCAGTAACAACAGGAACA+AGG | 0.523976 | tig0020598:-124215 | None:intergenic |
| AGTGGCCAACCATGAGATTG+AGG | 0.525477 | tig0020598:-120146 | None:intergenic |
| TTCTAAACAAATTCACCTCA+TGG | 0.525746 | tig0020598:-127218 | None:intergenic |
| TTAGTTAAACTTGTCACTCG+TGG | 0.530056 | tig0020598:+119754 | None:intergenic |
| GCTGATTCCTACAGGTACTA+GGG | 0.530609 | tig0020598:+126975 | Msa1383500:intron |
| ATTCAATGAGGCTTTCTATG+TGG | 0.532417 | tig0020598:-127293 | None:intergenic |
| ATAATCGGATCATCATTCTT+GGG | 0.533628 | tig0020598:+127135 | Msa1383500:exon |
| TTGGTATCTGCTATTTAACT+CGG | 0.538514 | tig0020598:+125766 | Msa1383500:CDS |
| GTTTCAGTCACTGGTATGAT+GGG | 0.539473 | tig0020598:+127052 | Msa1383500:CDS |
| GTATCGTTTAATCAGGCGAT+TGG | 0.541515 | tig0020598:+124114 | Msa1383500:CDS |
| CAGCCATTGGAGCCATGTAA+AGG | 0.544406 | tig0020598:-125655 | None:intergenic |
| GCCCTAAAATCAGTGCTACA+AGG | 0.550043 | tig0020598:+125498 | Msa1383500:CDS |
| CAATAGAAGAACACCAATGT+TGG | 0.550271 | tig0020598:-123869 | None:intergenic |
| ATATTAATTGGAATATTCAA+AGG | 0.556408 | tig0020598:+120018 | Msa1383500:CDS |
| TTCTTCCATTATAAGTGTGG+CGG | 0.557091 | tig0020598:-125693 | None:intergenic |
| GTGGCCAACCATGAGATTGA+GGG | 0.558110 | tig0020598:-120145 | None:intergenic |
| TATTCAAAGGCATATTCCAT+GGG | 0.558572 | tig0020598:+120031 | Msa1383500:CDS |
| TCTTCCATTATAAGTGTGGC+GGG | 0.560381 | tig0020598:-125692 | None:intergenic |
| TCAGGTAGGAGGAAGAAACT+TGG | 0.562941 | tig0020598:+119954 | Msa1383500:intron |
| AAAGGTTCTAAGACAATGAA+GGG | 0.568749 | tig0020598:+123796 | Msa1383500:CDS |
| TGCTTGCTATAACTCAAAAG+AGG | 0.574953 | tig0020598:-127320 | None:intergenic |
| ACTTATAATGGAAGAAAATG+TGG | 0.577031 | tig0020598:+125700 | Msa1383500:CDS |
| TTAGCTATGTTGCTATAGCA+TGG | 0.581935 | tig0020598:+123971 | Msa1383500:CDS |
| TGGTGTTGTTATTGCTAGTG+GGG | 0.582609 | tig0020598:+124233 | Msa1383500:CDS |
| ATGAGATTGAGGGAGAGAGA+TGG | 0.595186 | tig0020598:-120135 | None:intergenic |
| CTGGATCGAATAGTTTGCAT+AGG | 0.596131 | tig0020598:-124006 | None:intergenic |
| CAGGTACTAGGGAATGCTAA+AGG | 0.600457 | tig0020598:+126986 | Msa1383500:intron |
| GAAGTAGTCAAAGAAACCCA+TGG | 0.606705 | tig0020598:-120047 | None:intergenic |
| CAATAGGTCTTGTAGCAGCA+TGG | 0.617332 | tig0020598:+123839 | Msa1383500:CDS |
| ACCAGTAACAACAGGAACAA+GGG | 0.620205 | tig0020598:-124214 | None:intergenic |
| TCATACCAGTGACTGAAACT+GGG | 0.622203 | tig0020598:-127048 | None:intergenic |
| GCCATAGTGAATGTTTCTGA+AGG | 0.623656 | tig0020598:+120107 | Msa1383500:CDS |
| CCATTGGAGCCATGTAAAGG+AGG | 0.626569 | tig0020598:-125652 | None:intergenic |
| ATAGTGAATGTTTCTGAAGG+AGG | 0.632786 | tig0020598:+120110 | Msa1383500:CDS |
| GCATGGTATTCATCCAACAT+TGG | 0.639937 | tig0020598:+123856 | Msa1383500:CDS |
| TCAATGAGGCTTTCTATGTG+GGG | 0.645791 | tig0020598:-127291 | None:intergenic |
| ATAATGGAAGAAAATGTGGT+CGG | 0.647373 | tig0020598:+125704 | Msa1383500:CDS |
| AAATTCACCTCATGGAAGTG+AGG | 0.648634 | tig0020598:-127210 | None:intergenic |
| AACTTGGTGAACTATCTGCA+AGG | 0.655352 | tig0020598:+119970 | Msa1383500:CDS |
| ACAGTTGAGACTTACCTGAA+GGG | 0.665868 | tig0020598:-125849 | None:intergenic |
| AAAAGAGGACCCATTCAATG+AGG | 0.676341 | tig0020598:-127305 | None:intergenic |
| AAATGTGGTCGGAATCACGT+TGG | 0.686602 | tig0020598:+125715 | Msa1383500:CDS |
| ACAAGCTGTCATATGACACA+TGG | 0.698895 | tig0020598:-123941 | None:intergenic |
| CAGACAACCTCACTTCCATG+AGG | 0.765720 | tig0020598:+127203 | Msa1383500:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAAAAAAATTA+AGG | - | tig0020598:120267-120286 | None:intergenic | 0.0% |
| !! | TATTTAGTAAAAATAAATTG+AGG | - | tig0020598:122129-122148 | None:intergenic | 10.0% |
| !!! | AATATATTTTTCAAAACTAA+AGG | - | tig0020598:122279-122298 | None:intergenic | 10.0% |
| !! | TTTAGTTAATAAAAATGTAA+CGG | - | tig0020598:122639-122658 | None:intergenic | 10.0% |
| !!! | TTTCTTTCAAAAAATATTTT+TGG | - | tig0020598:122676-122695 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTATTTCAATTG+CGG | - | tig0020598:122780-122799 | None:intergenic | 10.0% |
| !!! | TAAAAAATAAAAAGCATATT+TGG | - | tig0020598:122837-122856 | None:intergenic | 10.0% |
| !! | AGTGATAAAAATAAATTAAT+CGG | - | tig0020598:122956-122975 | None:intergenic | 10.0% |
| !! | AAAGTTAAATTAAATATAGA+AGG | - | tig0020598:126051-126070 | None:intergenic | 10.0% |
| !! | AAATAACAGATAAAAAATAA+AGG | - | tig0020598:126191-126210 | None:intergenic | 10.0% |
| !! | ATATTAATTGGAATATTCAA+AGG | + | tig0020598:120018-120037 | Msa1383500:CDS | 15.0% |
| !! | TCATCAAATTATTATTCATA+TGG | + | tig0020598:120068-120087 | Msa1383500:CDS | 15.0% |
| !!! | CATATATTGATTTTTTAACT+GGG | - | tig0020598:120315-120334 | None:intergenic | 15.0% |
| !!! | ACATATATTGATTTTTTAAC+TGG | - | tig0020598:120316-120335 | None:intergenic | 15.0% |
| !!! | TAAATTTTACTTTCATTTGT+TGG | - | tig0020598:121660-121679 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAACGTCAAA+TGG | + | tig0020598:122395-122414 | Msa1383500:intron | 15.0% |
| !! | AAAAAAAAAAAACGTCAAAT+GGG | + | tig0020598:122396-122415 | Msa1383500:intron | 15.0% |
| !!! | CATCCTTTAATATATATTTT+TGG | - | tig0020598:122927-122946 | None:intergenic | 15.0% |
| !!! | GATAAAATAAGACTTTTTTA+AGG | + | tig0020598:123262-123281 | Msa1383500:intron | 15.0% |
| !!! | TTTTGTTTTTTTTTGTTTTG+AGG | - | tig0020598:123543-123562 | None:intergenic | 15.0% |
| !!! | TTATATTATGACTTTTAAGA+GGG | + | tig0020598:124170-124189 | Msa1383500:CDS | 15.0% |
| !!! | AAACTAATCGTTTTATTTTT+TGG | + | tig0020598:125554-125573 | Msa1383500:intron | 15.0% |
| !!! | TTCAAGTTATATATTCAAAT+CGG | + | tig0020598:125581-125600 | Msa1383500:intron | 15.0% |
| !! | ACTATTAAGACTTAAAATTT+AGG | + | tig0020598:125900-125919 | Msa1383500:intron | 15.0% |
| !! | GTAAAAATTAAAATGAAACA+AGG | - | tig0020598:126279-126298 | None:intergenic | 15.0% |
| !!! | ATTAAAAGTAATTTGAAATG+TGG | - | tig0020598:126740-126759 | None:intergenic | 15.0% |
| !! | TGAATATTCCAATTAATATG+TGG | - | tig0020598:120017-120036 | None:intergenic | 20.0% |
| !!! | GAAAAGTTGATGTTTTTTTA+AGG | - | tig0020598:120458-120477 | None:intergenic | 20.0% |
| !! | AATGATTCTACAAAAACTAT+TGG | - | tig0020598:120501-120520 | None:intergenic | 20.0% |
| !!! | TTAGTATTTTATGTGTTTCT+AGG | + | tig0020598:120713-120732 | Msa1383500:intron | 20.0% |
| !!! | ATAAGGATATATTTTGGATT+GGG | - | tig0020598:120877-120896 | None:intergenic | 20.0% |
| !!! | AATAAGGATATATTTTGGAT+TGG | - | tig0020598:120878-120897 | None:intergenic | 20.0% |
| !! | AATCCAAAATATATCCTTAT+TGG | + | tig0020598:120877-120896 | Msa1383500:intron | 20.0% |
| !!! | TTAATATTTTTGGGATCAAA+AGG | - | tig0020598:120925-120944 | None:intergenic | 20.0% |
| !!! | CAAGGACTTTTAATATTTTT+GGG | - | tig0020598:120934-120953 | None:intergenic | 20.0% |
| !!! | ACAAGGACTTTTAATATTTT+TGG | - | tig0020598:120935-120954 | None:intergenic | 20.0% |
| !! | ATGAGATAAATACAAAATGT+GGG | - | tig0020598:120967-120986 | None:intergenic | 20.0% |
| !! | AATGAGATAAATACAAAATG+TGG | - | tig0020598:120968-120987 | None:intergenic | 20.0% |
| !!! | TTAATATTTTTGGGATCAAA+AGG | - | tig0020598:120925-120944 | None:intergenic | 20.0% |
| !!! | CAAGGACTTTTAATATTTTT+GGG | - | tig0020598:120934-120953 | None:intergenic | 20.0% |
| !!! | ACAAGGACTTTTAATATTTT+TGG | - | tig0020598:120935-120954 | None:intergenic | 20.0% |
| !! | ATGAGATAAATACAAAATGT+GGG | - | tig0020598:120967-120986 | None:intergenic | 20.0% |
| !! | AATGAGATAAATACAAAATG+TGG | - | tig0020598:120968-120987 | None:intergenic | 20.0% |
| !!! | AGTTTGACTTTGAATTTTTT+AGG | - | tig0020598:121145-121164 | None:intergenic | 20.0% |
| !! | TGTGAAAACAAAGAAATAAA+AGG | - | tig0020598:121895-121914 | None:intergenic | 20.0% |
| !! | TAGTAAAAATAAATTGAGGA+AGG | - | tig0020598:122125-122144 | None:intergenic | 20.0% |
| !!! | CCACTATTTTTACAAAATAA+GGG | - | tig0020598:122324-122343 | None:intergenic | 20.0% |
| !!! | CCTTATTTTGTAAAAATAGT+GGG | + | tig0020598:122322-122341 | Msa1383500:intron | 20.0% |
| !!! | GTACATATTTGACTTTTTTT+GGG | - | tig0020598:122432-122451 | None:intergenic | 20.0% |
| !!! | AGTACATATTTGACTTTTTT+TGG | - | tig0020598:122433-122452 | None:intergenic | 20.0% |
| !! | AAAGTCAAATATGTACTATT+TGG | + | tig0020598:122436-122455 | Msa1383500:intron | 20.0% |
| !! | TAAAGTGTAGAAGTTAAATT+TGG | - | tig0020598:122707-122726 | None:intergenic | 20.0% |
| !!! | TACAAGTTTTTAAAAGAAGT+TGG | - | tig0020598:123028-123047 | None:intergenic | 20.0% |
| !! | TAAAATCAACTTGTAAAATC+AGG | + | tig0020598:123046-123065 | Msa1383500:intron | 20.0% |
| !! | AAAATCAACTTGTAAAATCA+GGG | + | tig0020598:123047-123066 | Msa1383500:intron | 20.0% |
| !!! | ATTTAAAGCTATATAGTTGA+AGG | - | tig0020598:123421-123440 | None:intergenic | 20.0% |
| !! | AGTCATAATATAAGCAAAAA+TGG | - | tig0020598:124163-124182 | None:intergenic | 20.0% |
| !!! | CTTATATTATGACTTTTAAG+AGG | + | tig0020598:124169-124188 | Msa1383500:CDS | 20.0% |
| !!! | ATTCAGTTTTTAATTGTTGA+TGG | + | tig0020598:124307-124326 | Msa1383500:intron | 20.0% |
| !! | AAAATGATATTGTGTATTGT+TGG | + | tig0020598:124333-124352 | Msa1383500:intron | 20.0% |
| !!! | CATCAAATTTTATCTAGTTT+AGG | + | tig0020598:124596-124615 | Msa1383500:intron | 20.0% |
| !!! | TAAATGGATTTATATGCTTT+AGG | + | tig0020598:124764-124783 | Msa1383500:intron | 20.0% |
| !! | CCTATTTATAAGAGAAATTT+GGG | - | tig0020598:125178-125197 | None:intergenic | 20.0% |
| !! | TCCTATTTATAAGAGAAATT+TGG | - | tig0020598:125179-125198 | None:intergenic | 20.0% |
| !! | TGTGAAAAATAAAAATGTTC+TGG | + | tig0020598:125377-125396 | Msa1383500:intron | 20.0% |
| !! | ATACAATGAATCCAAATAAA+TGG | - | tig0020598:125455-125474 | None:intergenic | 20.0% |
| !! | AACTAAATCTTAATCTCATT+GGG | - | tig0020598:125996-126015 | None:intergenic | 20.0% |
| !! | AAATGAAATCACAACTAAAT+GGG | - | tig0020598:126559-126578 | None:intergenic | 20.0% |
| !! | AATGTATACAATTAGTGTTT+AGG | + | tig0020598:126674-126693 | Msa1383500:intron | 20.0% |
| !! | TGTCATAAATATAAGTAGAT+GGG | + | tig0020598:126826-126845 | Msa1383500:intron | 20.0% |
| !! | ATTTTGCTTAAGGATCATAT+AGG | - | tig0020598:119895-119914 | None:intergenic | 25.0% |
| ! | ACATGAAGAATTGATCTATT+TGG | + | tig0020598:119926-119945 | Msa1383500:intron | 25.0% |
| !!! | TTGATCTATTTGGTTTTTTC+AGG | + | tig0020598:119936-119955 | Msa1383500:intron | 25.0% |
| ! | CAATATCACCACATATTAAT+TGG | + | tig0020598:120006-120025 | Msa1383500:CDS | 25.0% |
| ! | ACTTATAATTAGAAAACCGA+CGG | - | tig0020598:120663-120682 | None:intergenic | 25.0% |
| !! | GTTTTCTAATTATAAGTCAG+CGG | + | tig0020598:120666-120685 | Msa1383500:intron | 25.0% |
| ! | AAATACTAAAATGTCTCCAA+CGG | - | tig0020598:120702-120721 | None:intergenic | 25.0% |
| !! | GAACCAATAAGGATATATTT+TGG | - | tig0020598:120883-120902 | None:intergenic | 25.0% |
| ! | AGTCAAACTTTGACAAAAAA+AGG | + | tig0020598:121156-121175 | Msa1383500:intron | 25.0% |
| !! | GAAAAAATTCAAAAGCGTAT+TGG | - | tig0020598:121321-121340 | None:intergenic | 25.0% |
| !!! | GTTACTTTAGGATATTTCTT+AGG | - | tig0020598:121361-121380 | None:intergenic | 25.0% |
| !!! | TATGTTATTCAGTTTTGTCT+TGG | - | tig0020598:121383-121402 | None:intergenic | 25.0% |
| ! | ATGTTTCGACTAAAATTGAA+TGG | + | tig0020598:121523-121542 | Msa1383500:intron | 25.0% |
| !! | CATTATGATTTTGTGATTGT+AGG | + | tig0020598:121559-121578 | Msa1383500:intron | 25.0% |
| !! | CAAAATAGGTTGAAAAGTTT+AGG | + | tig0020598:121750-121769 | Msa1383500:intron | 25.0% |
| ! | AAATTTAAGCATGTTCTTAC+TGG | + | tig0020598:121790-121809 | Msa1383500:intron | 25.0% |
| ! | AATTTAAGCATGTTCTTACT+GGG | + | tig0020598:121791-121810 | Msa1383500:intron | 25.0% |
| ! | CATCACACACAAAAAAAAAA+TGG | - | tig0020598:121821-121840 | None:intergenic | 25.0% |
| !!! | CATTTTTTTTTTGTGTGTGA+TGG | + | tig0020598:121819-121838 | Msa1383500:intron | 25.0% |
| !! | ACATTAATGTTACTTAGGTT+AGG | - | tig0020598:121960-121979 | None:intergenic | 25.0% |
| !! | TGCTTACATTAATGTTACTT+AGG | - | tig0020598:121965-121984 | None:intergenic | 25.0% |
| ! | TAATAAATATTCCAAAGTCG+CGG | + | tig0020598:122048-122067 | Msa1383500:intron | 25.0% |
| !! | AATTGCAATGATTTCTTTTG+AGG | + | tig0020598:122229-122248 | Msa1383500:intron | 25.0% |
| !! | ATAAGGGAAGTATAATTTGA+GGG | - | tig0020598:122308-122327 | None:intergenic | 25.0% |
| !! | AATAAGGGAAGTATAATTTG+AGG | - | tig0020598:122309-122328 | None:intergenic | 25.0% |
| !!! | CCCTTATTTTGTAAAAATAG+TGG | + | tig0020598:122321-122340 | Msa1383500:intron | 25.0% |
| !!! | CCCACTATTTTTACAAAATA+AGG | - | tig0020598:122325-122344 | None:intergenic | 25.0% |
| !! | CTTTTGCAATTTACTTATCA+TGG | - | tig0020598:122614-122633 | None:intergenic | 25.0% |
| ! | TTGTAATTATGATGTGATGT+AGG | - | tig0020598:122744-122763 | None:intergenic | 25.0% |
| ! | ATTGAAAATAGTGATGATAG+AGG | - | tig0020598:122813-122832 | None:intergenic | 25.0% |
| ! | AATGCTAAATGCCATAAATA+AGG | + | tig0020598:122900-122919 | Msa1383500:intron | 25.0% |
| ! | ATGCTAAATGCCATAAATAA+GGG | + | tig0020598:122901-122920 | Msa1383500:intron | 25.0% |
| !!! | ATATTTTTGGCCCTTATTTA+TGG | - | tig0020598:122914-122933 | None:intergenic | 25.0% |
| ! | GGGCCAAAAATATATATTAA+AGG | + | tig0020598:122921-122940 | Msa1383500:intron | 25.0% |
| !! | AACAAACATCGTTAGAATTT+TGG | + | tig0020598:122976-122995 | Msa1383500:intron | 25.0% |
| !! | TGTTAGTTAATTGACTCTTT+AGG | - | tig0020598:123313-123332 | None:intergenic | 25.0% |
| ! | CCATGAAAAAAAAAAGTTGA+AGG | - | tig0020598:123357-123376 | None:intergenic | 25.0% |
| !!! | CCTTCAACTTTTTTTTTTCA+TGG | + | tig0020598:123354-123373 | Msa1383500:intron | 25.0% |
| ! | GAGAGAAGAAGAAATAAATT+AGG | - | tig0020598:123451-123470 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTGTTTTGAGGA+TGG | - | tig0020598:123539-123558 | None:intergenic | 25.0% |
| !!! | GAAAAAGTTGTTGACTTTAA+CGG | - | tig0020598:123690-123709 | None:intergenic | 25.0% |
| !! | TCATGATTGTGATTTGAAAT+GGG | - | tig0020598:123750-123769 | None:intergenic | 25.0% |
| ! | TTCATGATTGTGATTTGAAA+TGG | - | tig0020598:123751-123770 | None:intergenic | 25.0% |
| ! | GAAACAAAAACAATGAACAA+GGG | - | tig0020598:124277-124296 | None:intergenic | 25.0% |
| ! | AGAAACAAAAACAATGAACA+AGG | - | tig0020598:124278-124297 | None:intergenic | 25.0% |
| ! | AATTGTATTTAGTGTATGCT+TGG | + | tig0020598:124391-124410 | Msa1383500:intron | 25.0% |
| ! | TGAATAATGTGACTTATGTT+TGG | + | tig0020598:124482-124501 | Msa1383500:intron | 25.0% |
| !! | ATGATAATGTGCATTGTTAA+TGG | + | tig0020598:124516-124535 | Msa1383500:intron | 25.0% |
| !! | TGATAATGTGCATTGTTAAT+GGG | + | tig0020598:124517-124536 | Msa1383500:intron | 25.0% |
| !! | TTATCTAGTTTAGGTTTGTT+TGG | + | tig0020598:124605-124624 | Msa1383500:intron | 25.0% |
| !! | TATCTAGTTTAGGTTTGTTT+GGG | + | tig0020598:124606-124625 | Msa1383500:intron | 25.0% |
| ! | TGTAAGATTATGTGTTGAAT+TGG | + | tig0020598:124648-124667 | Msa1383500:intron | 25.0% |
| ! | CCTAACTTTCTCTTATAAAT+AGG | - | tig0020598:125096-125115 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+AGG | + | tig0020598:125093-125112 | Msa1383500:intron | 25.0% |
| ! | TCAACAAAAGTGAATGTATT+TGG | + | tig0020598:125116-125135 | Msa1383500:intron | 25.0% |
| ! | CCCAAATTTCTCTTATAAAT+AGG | + | tig0020598:125175-125194 | Msa1383500:intron | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | + | tig0020598:125180-125199 | Msa1383500:intron | 25.0% |
| ! | AATCCAAATAAATGGAAACT+TGG | - | tig0020598:125447-125466 | None:intergenic | 25.0% |
| !! | ATTTTCTTCCATTATAAGTG+TGG | - | tig0020598:125699-125718 | None:intergenic | 25.0% |
| !! | ACTTATAATGGAAGAAAATG+TGG | + | tig0020598:125700-125719 | Msa1383500:CDS | 25.0% |
| ! | CAACTAAATCTTAATCTCAT+TGG | - | tig0020598:125997-126016 | None:intergenic | 25.0% |
| ! | ATATAGAAGGAAAACAAAGA+AGG | - | tig0020598:126038-126057 | None:intergenic | 25.0% |
| ! | TTTGTATCACAATATTAGCA+TGG | + | tig0020598:126156-126175 | Msa1383500:intron | 25.0% |
| !!! | TGTTATTTTGTAATGTGCAT+TGG | + | tig0020598:126203-126222 | Msa1383500:intron | 25.0% |
| ! | AAACTAGACTAAATATTGCT+AGG | - | tig0020598:126306-126325 | None:intergenic | 25.0% |
| !!! | ATTAATTTTGATGACATCTC+TGG | - | tig0020598:126376-126395 | None:intergenic | 25.0% |
| ! | GATGTCATCAAAATTAATTC+AGG | + | tig0020598:126378-126397 | Msa1383500:intron | 25.0% |
| ! | CAAATGAAATCACAACTAAA+TGG | - | tig0020598:126560-126579 | None:intergenic | 25.0% |
| ! | TCAAATATTTATGTAGCTGA+TGG | - | tig0020598:126586-126605 | None:intergenic | 25.0% |
| ! | AGCTACATAAATATTTGATC+AGG | + | tig0020598:126588-126607 | Msa1383500:intron | 25.0% |
| ! | GTGTCATAAATATAAGTAGA+TGG | + | tig0020598:126825-126844 | Msa1383500:intron | 25.0% |
| ! | AAACTGGGTTTCTAAATATT+AGG | - | tig0020598:127036-127055 | None:intergenic | 25.0% |
| !! | TTTTTGTCGTATATTCTTTG+AGG | + | tig0020598:127435-127454 | Msa1383500:three_prime_UTR | 25.0% |
| ! | TGATCACTTGATTTTGCTTA+AGG | - | tig0020598:119905-119924 | None:intergenic | 30.0% |
| !!! | TCTATTTGGTTTTTTCAGGT+AGG | + | tig0020598:119940-119959 | Msa1383500:intron | 30.0% |
| ! | ATATTCAAAGGCATATTCCA+TGG | + | tig0020598:120030-120049 | Msa1383500:CDS | 30.0% |
| ! | TATTCAAAGGCATATTCCAT+GGG | + | tig0020598:120031-120050 | Msa1383500:CDS | 30.0% |
| !!! | TGATTTTTTAACTGGGACAT+TGG | - | tig0020598:120308-120327 | None:intergenic | 30.0% |
| AAACAACCATCATAAGGTTT+AGG | - | tig0020598:120572-120591 | None:intergenic | 30.0% | |
| GAAGAAAAACAACCATCATA+AGG | - | tig0020598:120578-120597 | None:intergenic | 30.0% | |
| !! | AGTCTTTTTCATGTGTTTCT+AGG | - | tig0020598:120616-120635 | None:intergenic | 30.0% |
| AAAAAGACTAAAAAGTCCAG+CGG | + | tig0020598:120627-120646 | Msa1383500:intron | 30.0% | |
| ! | GTTTAGTTTAGGAACCAATA+AGG | - | tig0020598:120894-120913 | None:intergenic | 30.0% |
| ! | AGGAGTATAAGGTTTAGTTT+AGG | - | tig0020598:120905-120924 | None:intergenic | 30.0% |
| ! | GAATATTTAGGGTAGACATT+AGG | - | tig0020598:121216-121235 | None:intergenic | 30.0% |
| GCTAGGAATAGGAATATTTA+GGG | - | tig0020598:121227-121246 | None:intergenic | 30.0% | |
| AGCTAGGAATAGGAATATTT+AGG | - | tig0020598:121228-121247 | None:intergenic | 30.0% | |
| CTTTATTGTTAGCTAGGAAT+AGG | - | tig0020598:121238-121257 | None:intergenic | 30.0% | |
| GTACTACTTTATTGTTAGCT+AGG | - | tig0020598:121244-121263 | None:intergenic | 30.0% | |
| AGTAGTACTTACATGACAAA+TGG | + | tig0020598:121256-121275 | Msa1383500:intron | 30.0% | |
| GTAGTACTTACATGACAAAT+GGG | + | tig0020598:121257-121276 | Msa1383500:intron | 30.0% | |
| ! | GATTTGAGCGAATTTTTGTT+TGG | + | tig0020598:121279-121298 | Msa1383500:intron | 30.0% |
| !! | AGTTTTGTCTTGGTTACTTT+AGG | - | tig0020598:121373-121392 | None:intergenic | 30.0% |
| ATTTCCAACTACAATGAAGT+GGG | - | tig0020598:121435-121454 | None:intergenic | 30.0% | |
| AATTTCCAACTACAATGAAG+TGG | - | tig0020598:121436-121455 | None:intergenic | 30.0% | |
| ACTTCATTGTAGTTGGAAAT+TGG | + | tig0020598:121435-121454 | Msa1383500:intron | 30.0% | |
| CTTCATTGTAGTTGGAAATT+GGG | + | tig0020598:121436-121455 | Msa1383500:intron | 30.0% | |
| TTAATATTCTGCACGACAAT+TGG | - | tig0020598:121595-121614 | None:intergenic | 30.0% | |
| !!! | TTTCAACCTATTTTGACTTC+AGG | - | tig0020598:121745-121764 | None:intergenic | 30.0% |
| !! | TTTGTTTTCACATAAGAACG+TGG | + | tig0020598:121903-121922 | Msa1383500:intron | 30.0% |
| GAAAATAAACAAGTCACTTC+CGG | + | tig0020598:121925-121944 | Msa1383500:intron | 30.0% | |
| TATTAGGAATAGTCCAACTT+AGG | - | tig0020598:122033-122052 | None:intergenic | 30.0% | |
| !! | GCGACTTTGGAATATTTATT+AGG | - | tig0020598:122049-122068 | None:intergenic | 30.0% |
| AATAAATATTCCAAAGTCGC+GGG | + | tig0020598:122049-122068 | Msa1383500:intron | 30.0% | |
| ! | TAAGGGAAGTATAATTTGAG+GGG | - | tig0020598:122307-122326 | None:intergenic | 30.0% |
| TGTTGTAATTGTATGGTCAA+CGG | - | tig0020598:122536-122555 | None:intergenic | 30.0% | |
| ! | ACATCGTTAGAATTTTGGAT+TGG | + | tig0020598:122981-123000 | Msa1383500:intron | 30.0% |
| ! | CATCGTTAGAATTTTGGATT+GGG | + | tig0020598:122982-123001 | Msa1383500:intron | 30.0% |
| ! | TTGTGATTTGAAATGGGTAA+TGG | - | tig0020598:123744-123763 | None:intergenic | 30.0% |
| CACAATCATGAAATTGTTAC+AGG | + | tig0020598:123759-123778 | Msa1383500:intron | 30.0% | |
| !! | AAAAGGTTCTAAGACAATGA+AGG | + | tig0020598:123795-123814 | Msa1383500:CDS | 30.0% |
| !! | AAAGGTTCTAAGACAATGAA+GGG | + | tig0020598:123796-123815 | Msa1383500:CDS | 30.0% |
| ! | AAGTATTTGTTGAGCAACTA+TGG | + | tig0020598:123895-123914 | Msa1383500:CDS | 30.0% |
| GATCTTAAAGAATTGAATCC+TGG | - | tig0020598:124028-124047 | None:intergenic | 30.0% | |
| !! | TATTATGACTTTTAAGAGGG+AGG | + | tig0020598:124173-124192 | Msa1383500:CDS | 30.0% |
| TGATATTGTGTATTGTTGGT+AGG | + | tig0020598:124337-124356 | Msa1383500:intron | 30.0% | |
| TTAATGGGAATGGTATAGTA+TGG | + | tig0020598:124532-124551 | Msa1383500:intron | 30.0% | |
| TAATGGGAATGGTATAGTAT+GGG | + | tig0020598:124533-124552 | Msa1383500:intron | 30.0% | |
| !!! | TATGGGGGAGTTATTTTTTT+GGG | + | tig0020598:124550-124569 | Msa1383500:intron | 30.0% |
| !!! | TTTGGGTGTTGACTTTTTTA+TGG | + | tig0020598:124567-124586 | Msa1383500:intron | 30.0% |
| !! | ATACGAGTTTTGTCAAATAG+TGG | + | tig0020598:124860-124879 | Msa1383500:intron | 30.0% |
| !! | TACGAGTTTTGTCAAATAGT+GGG | + | tig0020598:124861-124880 | Msa1383500:intron | 30.0% |
| AGTCTGAATATGTTCTGTAT+TGG | + | tig0020598:125047-125066 | Msa1383500:intron | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | - | tig0020598:125091-125110 | None:intergenic | 30.0% | |
| !!! | TTGTATCCAGTTTTAAGCAA+TGG | + | tig0020598:125311-125330 | Msa1383500:intron | 30.0% |
| AATCTACCATTGCTTAAAAC+TGG | - | tig0020598:125320-125339 | None:intergenic | 30.0% | |
| TCTTCCTCTATTTGATCATA+GGG | + | tig0020598:125417-125436 | Msa1383500:intron | 30.0% | |
| GAACCAAGTTTCCATTTATT+TGG | + | tig0020598:125441-125460 | Msa1383500:CDS | 30.0% | |
| ! | GAATTTTGCTTTCTTCTGAA+GGG | + | tig0020598:125520-125539 | Msa1383500:CDS | 30.0% |
| ! | ATAATGGAAGAAAATGTGGT+CGG | + | tig0020598:125704-125723 | Msa1383500:CDS | 30.0% |
| AGCAGATACCAAATTATCTT+GGG | - | tig0020598:125758-125777 | None:intergenic | 30.0% | |
| TAGCAGATACCAAATTATCT+TGG | - | tig0020598:125759-125778 | None:intergenic | 30.0% | |
| ! | TTGGTATCTGCTATTTAACT+CGG | + | tig0020598:125766-125785 | Msa1383500:CDS | 30.0% |
| ATGTTTCGTGACCAAAAAAT+TGG | - | tig0020598:125816-125835 | None:intergenic | 30.0% | |
| GTCTTAATAGTTTCGAAAGA+GGG | - | tig0020598:125891-125910 | None:intergenic | 30.0% | |
| AGTCTTAATAGTTTCGAAAG+AGG | - | tig0020598:125892-125911 | None:intergenic | 30.0% | |
| AAATCTTAATCTCATTGGGT+GGG | - | tig0020598:125992-126011 | None:intergenic | 30.0% | |
| TAAATCTTAATCTCATTGGG+TGG | - | tig0020598:125993-126012 | None:intergenic | 30.0% | |
| AATGTCACTAAACTTTCTAC+TGG | + | tig0020598:126402-126421 | Msa1383500:intron | 30.0% | |
| ATGACTCATTAACTATGATC+AGG | + | tig0020598:126486-126505 | Msa1383500:intron | 30.0% | |
| AAATGGGAGAGAAAGAAAAT+TGG | - | tig0020598:126543-126562 | None:intergenic | 30.0% | |
| ATAAATATAAGTAGATGGGC+TGG | + | tig0020598:126830-126849 | Msa1383500:intron | 30.0% | |
| ! | TAAATATAAGTAGATGGGCT+GGG | + | tig0020598:126831-126850 | Msa1383500:intron | 30.0% |
| ATAATCGGATCATCATTCTT+GGG | + | tig0020598:127135-127154 | Msa1383500:exon | 30.0% | |
| TTCTAAACAAATTCACCTCA+TGG | - | tig0020598:127221-127240 | None:intergenic | 30.0% | |
| ! | TATTGCAACTTTTGTACTGT+GGG | - | tig0020598:127365-127384 | None:intergenic | 30.0% |
| ! | TTATTGCAACTTTTGTACTG+TGG | - | tig0020598:127366-127385 | None:intergenic | 30.0% |
| TTTCTCTACTTAAGCATTTC+AGG | + | tig0020598:127396-127415 | Msa1383500:three_prime_UTR | 30.0% | |
| TGAGGAAAGAGTTGTAAAAT+TGG | + | tig0020598:127453-127472 | Msa1383500:three_prime_UTR | 30.0% | |
| GTAATAGATATGACAGTTGC+TGG | - | tig0020598:119817-119836 | None:intergenic | 35.0% | |
| GCAACTGTCATATCTATTAC+TGG | + | tig0020598:119817-119836 | Msa1383500:CDS | 35.0% | |
| !!! | ATTTGGTTTTTTCAGGTAGG+AGG | + | tig0020598:119943-119962 | Msa1383500:intron | 35.0% |
| TCCTTCAGAAACATTCACTA+TGG | - | tig0020598:120111-120130 | None:intergenic | 35.0% | |
| ! | ATAGTGAATGTTTCTGAAGG+AGG | + | tig0020598:120110-120129 | Msa1383500:CDS | 35.0% |
| ! | TGTTTTCTTAACCAATGTCC+CGG | + | tig0020598:120401-120420 | Msa1383500:intron | 35.0% |
| ! | AGTTTTCGCGTCATGTTAAT+CGG | - | tig0020598:120431-120450 | None:intergenic | 35.0% |
| CATGATCCTAAACCTTATGA+TGG | + | tig0020598:120563-120582 | Msa1383500:intron | 35.0% | |
| ! | AAGGTCAAAGGAGTACAATA+AGG | - | tig0020598:120771-120790 | None:intergenic | 35.0% |
| TATTGTACTCCTTTGACCTT+TGG | + | tig0020598:120771-120790 | Msa1383500:intron | 35.0% | |
| ATTGTACTCCTTTGACCTTT+GGG | + | tig0020598:120772-120791 | Msa1383500:intron | 35.0% | |
| AAATTTCCTAGATGTCCCAA+AGG | - | tig0020598:120790-120809 | None:intergenic | 35.0% | |
| ! | AAGGTCAAAGGAGTACAATA+AGG | - | tig0020598:120771-120790 | None:intergenic | 35.0% |
| TATTGTACTCCTTTGACCTT+TGG | + | tig0020598:120771-120790 | Msa1383500:intron | 35.0% | |
| ATTGTACTCCTTTGACCTTT+GGG | + | tig0020598:120772-120791 | Msa1383500:intron | 35.0% | |
| ! | TTGGGATCAAAAGGAGTATA+AGG | - | tig0020598:120916-120935 | None:intergenic | 35.0% |
| !! | ATTAGGATTGATTTGGAGCT+GGG | - | tig0020598:121199-121218 | None:intergenic | 35.0% |
| GGTAGACATTAGGATTGATT+TGG | - | tig0020598:121206-121225 | None:intergenic | 35.0% | |
| !! | TTGAGCGAATTTTTGTTTGG+TGG | + | tig0020598:121282-121301 | Msa1383500:intron | 35.0% |
| !! | TGGGTTGGTTCAAGAAAATT+TGG | - | tig0020598:121416-121435 | None:intergenic | 35.0% |
| TGTTCTCCTGAAGTCAAAAT+AGG | + | tig0020598:121736-121755 | Msa1383500:intron | 35.0% | |
| ! | TCCAATTTTTGCACCTAAGT+TGG | + | tig0020598:122017-122036 | Msa1383500:intron | 35.0% |
| TCCAACTTAGGTGCAAAAAT+TGG | - | tig0020598:122021-122040 | None:intergenic | 35.0% | |
| ATAAATATTCCAAAGTCGCG+GGG | + | tig0020598:122050-122069 | Msa1383500:intron | 35.0% | |
| AGGAAGTTTACGAGATGAAT+TGG | - | tig0020598:122090-122109 | None:intergenic | 35.0% | |
| ATTCATCTCGTAAACTTCCT+AGG | + | tig0020598:122090-122109 | Msa1383500:intron | 35.0% | |
| !! | AGGCACTTGTTGTAATTGTA+TGG | - | tig0020598:122543-122562 | None:intergenic | 35.0% |
| ! | AGTGATGATAGAGGTTGATT+TGG | - | tig0020598:122804-122823 | None:intergenic | 35.0% |
| TTGGGGAAATTAAGGAATGA+GGG | - | tig0020598:123629-123648 | None:intergenic | 35.0% | |
| TTTGGGGAAATTAAGGAATG+AGG | - | tig0020598:123630-123649 | None:intergenic | 35.0% | |
| TTGAAAAGGGTCGAAGAAAA+CGG | - | tig0020598:123712-123731 | None:intergenic | 35.0% | |
| !! | ATGGATCTGAGCATTGAAAA+GGG | - | tig0020598:123725-123744 | None:intergenic | 35.0% |
| !! | AATGGATCTGAGCATTGAAA+AGG | - | tig0020598:123726-123745 | None:intergenic | 35.0% |
| ! | CAGGTTTCTGAAGATCAAAA+AGG | + | tig0020598:123778-123797 | Msa1383500:intron | 35.0% |
| TCAACACGTTTCTTCACAAT+AGG | + | tig0020598:123823-123842 | Msa1383500:CDS | 35.0% | |
| CAATAGAAGAACACCAATGT+TGG | - | tig0020598:123872-123891 | None:intergenic | 35.0% | |
| TGACACATGGTGAGAAAAAT+AGG | - | tig0020598:123931-123950 | None:intergenic | 35.0% | |
| TTAGCTATGTTGCTATAGCA+TGG | + | tig0020598:123971-123990 | Msa1383500:CDS | 35.0% | |
| ! | TTCTGTGTTTCTGTTGTGTT+TGG | + | tig0020598:124066-124085 | Msa1383500:CDS | 35.0% |
| ! | TCTGTGTTTCTGTTGTGTTT+GGG | + | tig0020598:124067-124086 | Msa1383500:CDS | 35.0% |
| TCTTCCTGTATCGTTTAATC+AGG | + | tig0020598:124107-124126 | Msa1383500:CDS | 35.0% | |
| GCAAAAATGGCAGTGAAAAA+AGG | - | tig0020598:124150-124169 | None:intergenic | 35.0% | |
| ATAACAACACCAGTAACAAC+AGG | - | tig0020598:124225-124244 | None:intergenic | 35.0% | |
| ! | TTGTGTATTGTTGGTAGGAA+TGG | + | tig0020598:124342-124361 | Msa1383500:intron | 35.0% |
| !! | AGGAATGGTTGACTTTTGTA+TGG | + | tig0020598:124357-124376 | Msa1383500:intron | 35.0% |
| !! | TTAGTGTATGCTTGGTTCTA+TGG | + | tig0020598:124399-124418 | Msa1383500:intron | 35.0% |
| ATGTGCATTGTTAATGGGAA+TGG | + | tig0020598:124522-124541 | Msa1383500:intron | 35.0% | |
| AATGGGAATGGTATAGTATG+GGG | + | tig0020598:124534-124553 | Msa1383500:intron | 35.0% | |
| !!! | GTATGGGGGAGTTATTTTTT+TGG | + | tig0020598:124549-124568 | Msa1383500:intron | 35.0% |
| ! | GTTTGGGATGTGATTTCAAA+TGG | + | tig0020598:124622-124641 | Msa1383500:intron | 35.0% |
| ! | GTTGAGTCAACTTTGTCTTT+TGG | + | tig0020598:124792-124811 | Msa1383500:intron | 35.0% |
| !!! | AGGGAGTATTTGTTTTACCA+GGG | + | tig0020598:125203-125222 | Msa1383500:intron | 35.0% |
| TAAGAAGTAATATCATGCCC+TGG | - | tig0020598:125223-125242 | None:intergenic | 35.0% | |
| GTCTTCCTCTATTTGATCAT+AGG | + | tig0020598:125416-125435 | Msa1383500:intron | 35.0% | |
| TTCACCCTATGATCAAATAG+AGG | - | tig0020598:125424-125443 | None:intergenic | 35.0% | |
| !!! | TCCTTGTAGCACTGATTTTA+GGG | - | tig0020598:125502-125521 | None:intergenic | 35.0% |
| !!! | TTCCTTGTAGCACTGATTTT+AGG | - | tig0020598:125503-125522 | None:intergenic | 35.0% |
| ! | GGAATTTTGCTTTCTTCTGA+AGG | + | tig0020598:125519-125538 | Msa1383500:CDS | 35.0% |
| AATGAATCTCCTCCTTTACA+TGG | + | tig0020598:125643-125662 | Msa1383500:CDS | 35.0% | |
| TTCTTCCATTATAAGTGTGG+CGG | - | tig0020598:125696-125715 | None:intergenic | 35.0% | |
| !! | ATTGGTCAGGTTGACAAAAT+AGG | - | tig0020598:125798-125817 | None:intergenic | 35.0% |
| !!! | TGTCAACCTGACCAATTTTT+TGG | + | tig0020598:125802-125821 | Msa1383500:CDS | 35.0% |
| TCACAATATTAGCATGGTCT+TGG | + | tig0020598:126162-126181 | Msa1383500:intron | 35.0% | |
| ! | TGCAGTCATTTGTGTGATTT+TGG | + | tig0020598:126226-126245 | Msa1383500:intron | 35.0% |
| AACTATGATCAGGATTTGTG+TGG | + | tig0020598:126496-126515 | Msa1383500:intron | 35.0% | |
| CATGTTAATTAACCATCCCA+AGG | - | tig0020598:126643-126662 | None:intergenic | 35.0% | |
| !! | CAAGAATGTTAGGCTTTGTT+TGG | + | tig0020598:126773-126792 | Msa1383500:intron | 35.0% |
| !! | AAATATAAGTAGATGGGCTG+GGG | + | tig0020598:126832-126851 | Msa1383500:intron | 35.0% |
| AGTACAAAATAGTACACAGC+TGG | - | tig0020598:126859-126878 | None:intergenic | 35.0% | |
| !! | TTATCCCTTTGTTCGCTTTT+TGG | - | tig0020598:127119-127138 | None:intergenic | 35.0% |
| AAAGCGAACAAAGGGATAAT+CGG | + | tig0020598:127120-127139 | Msa1383500:exon | 35.0% | |
| GATAATCGGATCATCATTCT+TGG | + | tig0020598:127134-127153 | Msa1383500:exon | 35.0% | |
| TTCAATGAGGCTTTCTATGT+GGG | - | tig0020598:127295-127314 | None:intergenic | 35.0% | |
| ATTCAATGAGGCTTTCTATG+TGG | - | tig0020598:127296-127315 | None:intergenic | 35.0% | |
| ACATAGAAAGCCTCATTGAA+TGG | + | tig0020598:127295-127314 | Msa1383500:three_prime_UTR | 35.0% | |
| CATAGAAAGCCTCATTGAAT+GGG | + | tig0020598:127296-127315 | Msa1383500:three_prime_UTR | 35.0% | |
| !! | TGCTTGCTATAACTCAAAAG+AGG | - | tig0020598:127323-127342 | None:intergenic | 35.0% |
| TCGTGGATTTGCATCTTCAA+TGG | + | tig0020598:119771-119790 | Msa1383500:exon | 40.0% | |
| ! | AACTTGGTGAACTATCTGCA+AGG | + | tig0020598:119970-119989 | Msa1383500:CDS | 40.0% |
| GAAGTAGTCAAAGAAACCCA+TGG | - | tig0020598:120050-120069 | None:intergenic | 40.0% | |
| ! | GCCATAGTGAATGTTTCTGA+AGG | + | tig0020598:120107-120126 | Msa1383500:CDS | 40.0% |
| TTGGCCACTTGAAAAGGTTT+GGG | + | tig0020598:120160-120179 | Msa1383500:intron | 40.0% | |
| !! | GATTCCCAAACCTTTTCAAG+TGG | - | tig0020598:120167-120186 | None:intergenic | 40.0% |
| ! | TGTGCAGTTAGCTTCTCAAA+AGG | + | tig0020598:120343-120362 | Msa1383500:intron | 40.0% |
| AAAGTTGTCCCAAAGGTCAA+AGG | - | tig0020598:120851-120870 | None:intergenic | 40.0% | |
| AATGTGGGATGTATGCTACA+AGG | - | tig0020598:120952-120971 | None:intergenic | 40.0% | |
| AATGTGGGATGTATGCTACA+AGG | - | tig0020598:120952-120971 | None:intergenic | 40.0% | |
| !! | CATTAGGATTGATTTGGAGC+TGG | - | tig0020598:121200-121219 | None:intergenic | 40.0% |
| GAGGAAGGTTAGATAATCCT+AGG | - | tig0020598:122110-122129 | None:intergenic | 40.0% | |
| GTCACAAGAGTTCGATGATT+AGG | - | tig0020598:122196-122215 | None:intergenic | 40.0% | |
| TCTTCTTCTCTCTCTCTCAA+TGG | + | tig0020598:123459-123478 | Msa1383500:intron | 40.0% | |
| !!! | TGTTTTGAGGATGGTGTGAA+TGG | - | tig0020598:123530-123549 | None:intergenic | 40.0% |
| GCATGGTATTCATCCAACAT+TGG | + | tig0020598:123856-123875 | Msa1383500:CDS | 40.0% | |
| ACAAGCTGTCATATGACACA+TGG | - | tig0020598:123944-123963 | None:intergenic | 40.0% | |
| ! | CTGGATCGAATAGTTTGCAT+AGG | - | tig0020598:124009-124028 | None:intergenic | 40.0% |
| CTATGCAAACTATTCGATCC+AGG | + | tig0020598:124007-124026 | Msa1383500:CDS | 40.0% | |
| ATCGCCTGATTAAACGATAC+AGG | - | tig0020598:124114-124133 | None:intergenic | 40.0% | |
| GTATCGTTTAATCAGGCGAT+TGG | + | tig0020598:124114-124133 | Msa1383500:CDS | 40.0% | |
| ACCAGTAACAACAGGAACAA+GGG | - | tig0020598:124217-124236 | None:intergenic | 40.0% | |
| !! | ACTGGTGTTGTTATTGCTAG+TGG | + | tig0020598:124231-124250 | Msa1383500:CDS | 40.0% |
| !! | CTGGTGTTGTTATTGCTAGT+GGG | + | tig0020598:124232-124251 | Msa1383500:CDS | 40.0% |
| !! | TGGTGTTGTTATTGCTAGTG+GGG | + | tig0020598:124233-124252 | Msa1383500:CDS | 40.0% |
| ATGGGAATGGTATAGTATGG+GGG | + | tig0020598:124535-124554 | Msa1383500:intron | 40.0% | |
| ACTGTAGCATTGTAGTGTCA+AGG | + | tig0020598:124966-124985 | Msa1383500:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | tig0020598:125184-125203 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | tig0020598:125183-125202 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | tig0020598:125183-125202 | Msa1383500:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | tig0020598:125184-125203 | Msa1383500:intron | 40.0% | |
| GGTAAAACAAATACTCCCTC+CGG | - | tig0020598:125202-125221 | None:intergenic | 40.0% | |
| !!! | GAGGGAGTATTTGTTTTACC+AGG | + | tig0020598:125202-125221 | Msa1383500:intron | 40.0% |
| ! | TTGCTTTCTTCTGAAGGGTA+AGG | + | tig0020598:125525-125544 | Msa1383500:intron | 40.0% |
| TCTTCCATTATAAGTGTGGC+GGG | - | tig0020598:125695-125714 | None:intergenic | 40.0% | |
| GAGACGATCCCAAGATAATT+TGG | + | tig0020598:125747-125766 | Msa1383500:CDS | 40.0% | |
| TCGTGACCAAAAAATTGGTC+AGG | - | tig0020598:125811-125830 | None:intergenic | 40.0% | |
| ACAGTTGAGACTTACCTGAA+GGG | - | tig0020598:125852-125871 | None:intergenic | 40.0% | |
| AACAGTTGAGACTTACCTGA+AGG | - | tig0020598:125853-125872 | None:intergenic | 40.0% | |
| CAACAGATGAGAGAACTTGT+TGG | - | tig0020598:126078-126097 | None:intergenic | 40.0% | |
| CAACAAGTTCTCTCATCTGT+TGG | + | tig0020598:126076-126095 | Msa1383500:intron | 40.0% | |
| !! | TTCTCTCATCTGTTGGTAGT+TGG | + | tig0020598:126083-126102 | Msa1383500:intron | 40.0% |
| !! | TCTCTCATCTGTTGGTAGTT+GGG | + | tig0020598:126084-126103 | Msa1383500:intron | 40.0% |
| ! | GTAGTTGGGACATCAGATTT+TGG | + | tig0020598:126098-126117 | Msa1383500:intron | 40.0% |
| TGGTTGAGTTCATAACTGAG+TGG | + | tig0020598:126516-126535 | Msa1383500:intron | 40.0% | |
| TTGCTGCATATGAATGACCT+TGG | + | tig0020598:126623-126642 | Msa1383500:intron | 40.0% | |
| TGCTGCATATGAATGACCTT+GGG | + | tig0020598:126624-126643 | Msa1383500:intron | 40.0% | |
| TTTCCCTCTGCAAGAATGTT+AGG | + | tig0020598:126763-126782 | Msa1383500:intron | 40.0% | |
| AAGCCTAACATTCTTGCAGA+GGG | - | tig0020598:126769-126788 | None:intergenic | 40.0% | |
| AAAGCCTAACATTCTTGCAG+AGG | - | tig0020598:126770-126789 | None:intergenic | 40.0% | |
| !! | TTGTTTGGCACTGGATGTTT+TGG | + | tig0020598:126788-126807 | Msa1383500:intron | 40.0% |
| TCATACCAGTGACTGAAACT+GGG | - | tig0020598:127051-127070 | None:intergenic | 40.0% | |
| ATCATACCAGTGACTGAAAC+TGG | - | tig0020598:127052-127071 | None:intergenic | 40.0% | |
| AGTTTCAGTCACTGGTATGA+TGG | + | tig0020598:127051-127070 | Msa1383500:CDS | 40.0% | |
| GTTTCAGTCACTGGTATGAT+GGG | + | tig0020598:127052-127071 | Msa1383500:CDS | 40.0% | |
| GAAGCCAAAAAGCGAACAAA+GGG | + | tig0020598:127112-127131 | Msa1383500:CDS | 40.0% | |
| AAATTCACCTCATGGAAGTG+AGG | - | tig0020598:127213-127232 | None:intergenic | 40.0% | |
| AGAGTCAAAGATTCAGAGTC+TGG | - | tig0020598:127253-127272 | None:intergenic | 40.0% | |
| TCAATGAGGCTTTCTATGTG+GGG | - | tig0020598:127294-127313 | None:intergenic | 40.0% | |
| AAAAGAGGACCCATTCAATG+AGG | - | tig0020598:127308-127327 | None:intergenic | 40.0% | |
| TCAGGTAGGAGGAAGAAACT+TGG | + | tig0020598:119954-119973 | Msa1383500:intron | 45.0% | |
| ATGAGATTGAGGGAGAGAGA+TGG | - | tig0020598:120138-120157 | None:intergenic | 45.0% | |
| ATCTCTCTCCCTCAATCTCA+TGG | + | tig0020598:120137-120156 | Msa1383500:CDS | 45.0% | |
| ! | TCATGGTTGGCCACTTGAAA+AGG | + | tig0020598:120154-120173 | Msa1383500:CDS | 45.0% |
| GTTGGCCACTTGAAAAGGTT+TGG | + | tig0020598:120159-120178 | Msa1383500:intron | 45.0% | |
| ! | GTCATGTTAATCGGTGTTCC+GGG | - | tig0020598:120422-120441 | None:intergenic | 45.0% |
| ! | CGTCATGTTAATCGGTGTTC+CGG | - | tig0020598:120423-120442 | None:intergenic | 45.0% |
| CTAGATGTCCCAAAGGTCAA+AGG | - | tig0020598:120783-120802 | None:intergenic | 45.0% | |
| !! | CTTTGACCTTTGGGACATCT+AGG | + | tig0020598:120781-120800 | Msa1383500:intron | 45.0% |
| TGGGTCAAAAGTTGTCCCAA+AGG | - | tig0020598:120858-120877 | None:intergenic | 45.0% | |
| CCAACTACAATGAAGTGGGT+TGG | - | tig0020598:121431-121450 | None:intergenic | 45.0% | |
| CCAACCCACTTCATTGTAGT+TGG | + | tig0020598:121428-121447 | Msa1383500:intron | 45.0% | |
| TTAGGTTAGGCACAACTCTC+CGG | - | tig0020598:121947-121966 | None:intergenic | 45.0% | |
| GGTGGGTCGAAATCGAATTA+AGG | - | tig0020598:123583-123602 | None:intergenic | 45.0% | |
| ATCTGTGAATCCATGGCTTG+GGG | - | tig0020598:123655-123674 | None:intergenic | 45.0% | |
| GATCTGTGAATCCATGGCTT+GGG | - | tig0020598:123656-123675 | None:intergenic | 45.0% | |
| GACTTTAACGGAACAAGCCA+TGG | - | tig0020598:123678-123697 | None:intergenic | 45.0% | |
| ! | CAATAGGTCTTGTAGCAGCA+TGG | + | tig0020598:123839-123858 | Msa1383500:CDS | 45.0% |
| !! | TGACTTTTAAGAGGGAGGCT+TGG | + | tig0020598:124178-124197 | Msa1383500:CDS | 45.0% |
| ACCCTTGTTCCTGTTGTTAC+TGG | + | tig0020598:124213-124232 | Msa1383500:CDS | 45.0% | |
| CACCAGTAACAACAGGAACA+AGG | - | tig0020598:124218-124237 | None:intergenic | 45.0% | |
| GCATTGAATGATACTCCCTC+CGG | + | tig0020598:125069-125088 | Msa1383500:intron | 45.0% | |
| GCCCTAAAATCAGTGCTACA+AGG | + | tig0020598:125498-125517 | Msa1383500:CDS | 45.0% | |
| AGAAGGAAAACCACAGCCAT+TGG | - | tig0020598:125671-125690 | None:intergenic | 45.0% | |
| ! | TTATAAGTGTGGCGGGAAGA+AGG | - | tig0020598:125688-125707 | None:intergenic | 45.0% |
| TCTTCCCGCCACACTTATAA+TGG | + | tig0020598:125688-125707 | Msa1383500:CDS | 45.0% | |
| AAATGTGGTCGGAATCACGT+TGG | + | tig0020598:125715-125734 | Msa1383500:CDS | 45.0% | |
| ! | GTTGGGACATCAGATTTTGG+TGG | + | tig0020598:126101-126120 | Msa1383500:intron | 45.0% |
| GCATATGAATGACCTTGGGA+TGG | + | tig0020598:126628-126647 | Msa1383500:intron | 45.0% | |
| !! | TGTTAGGCTTTGTTTGGCAC+TGG | + | tig0020598:126779-126798 | Msa1383500:intron | 45.0% |
| ! | ATCCTAGAGCTGATTCCTAC+AGG | + | tig0020598:126967-126986 | Msa1383500:intron | 45.0% |
| TACCTGTAGGAATCAGCTCT+AGG | - | tig0020598:126972-126991 | None:intergenic | 45.0% | |
| ! | AGCTGATTCCTACAGGTACT+AGG | + | tig0020598:126974-126993 | Msa1383500:intron | 45.0% |
| ! | GCTGATTCCTACAGGTACTA+GGG | + | tig0020598:126975-126994 | Msa1383500:intron | 45.0% |
| TAGCATTCCCTAGTACCTGT+AGG | - | tig0020598:126985-127004 | None:intergenic | 45.0% | |
| CAGGTACTAGGGAATGCTAA+AGG | + | tig0020598:126986-127005 | Msa1383500:intron | 45.0% | |
| AGAAACCCAGTTTCAGTCAC+TGG | + | tig0020598:127043-127062 | Msa1383500:CDS | 45.0% | |
| !! | GTCACTGGTATGATGGGTTA+TGG | + | tig0020598:127058-127077 | Msa1383500:CDS | 45.0% |
| GGTTATGGACTCACAGTCTT+CGG | + | tig0020598:127073-127092 | Msa1383500:CDS | 45.0% | |
| CGAAGCCAAAAAGCGAACAA+AGG | + | tig0020598:127111-127130 | Msa1383500:CDS | 45.0% | |
| !!! | TTTTAAAAAAAAAAAACATA+AGG | + | tig0020598:120273-120292 | Msa1383500:intron | 5.0% |
| !! | AAATAAAATAAAAAGTTATA+GGG | - | tig0020598:122494-122513 | None:intergenic | 5.0% |
| !! | AAAATAAAATAAAAAGTTAT+AGG | - | tig0020598:122495-122514 | None:intergenic | 5.0% |
| !!! | TAGTAAATTTTTTAAATAAT+AGG | - | tig0020598:122563-122582 | None:intergenic | 5.0% |
| !!! | TTTTATAATCAATTTTATTT+TGG | + | tig0020598:126441-126460 | Msa1383500:intron | 5.0% |
| CTCTCCCTCAATCTCATGGT+TGG | + | tig0020598:120141-120160 | Msa1383500:CDS | 50.0% | |
| GTGGCCAACCATGAGATTGA+GGG | - | tig0020598:120148-120167 | None:intergenic | 50.0% | |
| AGTGGCCAACCATGAGATTG+AGG | - | tig0020598:120149-120168 | None:intergenic | 50.0% | |
| ! | TAATCGGTGTTCCGGGACAT+TGG | - | tig0020598:120415-120434 | None:intergenic | 50.0% |
| CAGCGGTAGTTAACTACCGT+CGG | + | tig0020598:120644-120663 | Msa1383500:intron | 50.0% | |
| CAGCGGTAGTTAACTACCGT+TGG | + | tig0020598:120644-120663 | Msa1383500:intron | 50.0% | |
| !! | AGGATTGATTTGGAGCTGGG+TGG | - | tig0020598:121196-121215 | None:intergenic | 50.0% |
| TAATCATCACCCCGCGACTT+TGG | - | tig0020598:122062-122081 | None:intergenic | 50.0% | |
| AAGTCGCGGGGTGATGATTA+TGG | + | tig0020598:122062-122081 | Msa1383500:intron | 50.0% | |
| CTCTCTCTCTCAATGGATGC+TGG | + | tig0020598:123466-123485 | Msa1383500:intron | 50.0% | |
| AGAAGAACGAGGTGAGTGGT+GGG | - | tig0020598:123600-123619 | None:intergenic | 50.0% | |
| AGACAGAAGAACGAGGTGAG+TGG | - | tig0020598:123604-123623 | None:intergenic | 50.0% | |
| TGGGGGGTTTGGGGAAATTA+AGG | - | tig0020598:123637-123656 | None:intergenic | 50.0% | |
| ! | TCTGTGAATCCATGGCTTGG+GGG | - | tig0020598:123654-123673 | None:intergenic | 50.0% |
| GGATCTGTGAATCCATGGCT+TGG | - | tig0020598:123657-123676 | None:intergenic | 50.0% | |
| GCCATGGATTCACAGATCCA+TGG | + | tig0020598:123658-123677 | Msa1383500:intron | 50.0% | |
| GCCATGGATCTGTGAATCCA+TGG | - | tig0020598:123662-123681 | None:intergenic | 50.0% | |
| CCATTGGAGCCATGTAAAGG+AGG | - | tig0020598:125655-125674 | None:intergenic | 50.0% | |
| CCTCCTTTACATGGCTCCAA+TGG | + | tig0020598:125652-125671 | Msa1383500:CDS | 50.0% | |
| CAGCCATTGGAGCCATGTAA+AGG | - | tig0020598:125658-125677 | None:intergenic | 50.0% | |
| TTACATGGCTCCAATGGCTG+TGG | + | tig0020598:125658-125677 | Msa1383500:CDS | 50.0% | |
| CAGACAACCTCACTTCCATG+AGG | + | tig0020598:127203-127222 | Msa1383500:three_prime_UTR | 50.0% | |
| CGACGGTAGTTAACTACCGC+TGG | - | tig0020598:120646-120665 | None:intergenic | 55.0% | |
| CAGAAGAACGAGGTGAGTGG+TGG | - | tig0020598:123601-123620 | None:intergenic | 55.0% | |
| GAGGGAGAGACAGAAGAACG+AGG | - | tig0020598:123611-123630 | None:intergenic | 55.0% | |
| ! | ATCCATGGCTTGGGGGGTTT+GGG | - | tig0020598:123647-123666 | None:intergenic | 55.0% |
| ! | AATCCATGGCTTGGGGGGTT+TGG | - | tig0020598:123648-123667 | None:intergenic | 55.0% |
| ! | CTGTGAATCCATGGCTTGGG+GGG | - | tig0020598:123653-123672 | None:intergenic | 55.0% |
| TACCAGTGCTCTGACCCTTC+AGG | + | tig0020598:125835-125854 | Msa1383500:CDS | 55.0% | |
| TACCTGAAGGGTCAGAGCAC+TGG | - | tig0020598:125840-125859 | None:intergenic | 55.0% | |
| ! | TCCATGGCTTGGGGGGTTTG+GGG | - | tig0020598:123646-123665 | None:intergenic | 60.0% |
| TCCCCAAACCCCCCAAGCCA+TGG | + | tig0020598:123642-123661 | Msa1383500:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020598 | gene | 119757 | 127547 | 119757 | ID=Msa1383500;Name=Msa1383500 |
| tig0020598 | mRNA | 119757 | 127547 | 119757 | ID=Msa1383500-mRNA-1;Parent=Msa1383500;Name=Msa1383500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=33|1|1|1|1|1|6|409|407 |
| tig0020598 | exon | 119757 | 119838 | 119757 | ID=Msa1383500-mRNA-1:exon:8588;Parent=Msa1383500-mRNA-1 |
| tig0020598 | exon | 119958 | 120175 | 119958 | ID=Msa1383500-mRNA-1:exon:8589;Parent=Msa1383500-mRNA-1 |
| tig0020598 | exon | 123781 | 124254 | 123781 | ID=Msa1383500-mRNA-1:exon:8590;Parent=Msa1383500-mRNA-1 |
| tig0020598 | exon | 125438 | 125541 | 125438 | ID=Msa1383500-mRNA-1:exon:8591;Parent=Msa1383500-mRNA-1 |
| tig0020598 | exon | 125628 | 125856 | 125628 | ID=Msa1383500-mRNA-1:exon:8592;Parent=Msa1383500-mRNA-1 |
| tig0020598 | exon | 126989 | 127547 | 126989 | ID=Msa1383500-mRNA-1:exon:8593;Parent=Msa1383500-mRNA-1 |
| tig0020598 | five_prime_UTR | 119757 | 119789 | 119757 | ID=Msa1383500-mRNA-1:five_prime_utr;Parent=Msa1383500-mRNA-1 |
| tig0020598 | CDS | 119790 | 119838 | 119790 | ID=Msa1383500-mRNA-1:cds;Parent=Msa1383500-mRNA-1 |
| tig0020598 | CDS | 119958 | 120175 | 119958 | ID=Msa1383500-mRNA-1:cds;Parent=Msa1383500-mRNA-1 |
| tig0020598 | CDS | 123781 | 124254 | 123781 | ID=Msa1383500-mRNA-1:cds;Parent=Msa1383500-mRNA-1 |
| tig0020598 | CDS | 125438 | 125541 | 125438 | ID=Msa1383500-mRNA-1:cds;Parent=Msa1383500-mRNA-1 |
| tig0020598 | CDS | 125628 | 125856 | 125628 | ID=Msa1383500-mRNA-1:cds;Parent=Msa1383500-mRNA-1 |
| tig0020598 | CDS | 126989 | 127138 | 126989 | ID=Msa1383500-mRNA-1:cds;Parent=Msa1383500-mRNA-1 |
| tig0020598 | three_prime_UTR | 127139 | 127547 | 127139 | ID=Msa1383500-mRNA-1:three_prime_utr;Parent=Msa1383500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
