Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508560 | XP_003600842.2 | 92.910 | 409 | 11 | 3 | 1 | 391 | 1 | 409 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508560 | sp|Q5XF09|PT311_ARATH | 86.230 | 305 | 26 | 2 | 102 | 390 | 4 | 308 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508560 | A0A1S2YES8 | 82.809 | 413 | 39 | 9 | 1 | 390 | 1 | 404 | 0.0 | 619 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0416340 | Msa0508560 | 0.892012 | 2.349612e-74 | -8.615850e-47 |
| Msa0316020 | Msa0508560 | 0.804020 | 2.639821e-49 | -8.615850e-47 |
| Msa0362080 | Msa0508560 | 0.854384 | 1.275838e-61 | -8.615850e-47 |
| Msa0508560 | Msa1383500 | 0.893585 | 5.482587e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508560 | MtrunA17_Chr3g0112981 | 93.458 | 321 | 5 | 2 | 87 | 391 | 3 | 323 | 0.0 | 587 |
| Msa0508560 | MtrunA17_Chr5g0436341 | 85.809 | 303 | 27 | 2 | 104 | 390 | 4 | 306 | 0.0 | 516 |
| Msa0508560 | MtrunA17_Chr4g0008071 | 70.270 | 296 | 72 | 2 | 109 | 388 | 13 | 308 | 3.92e-147 | 419 |
| Msa0508560 | MtrunA17_Chr8g0382081 | 67.893 | 299 | 80 | 2 | 108 | 390 | 11 | 309 | 1.31e-140 | 402 |
| Msa0508560 | MtrunA17_Chr4g0056661 | 60.635 | 315 | 108 | 2 | 93 | 391 | 37 | 351 | 4.77e-121 | 354 |
| Msa0508560 | MtrunA17_Chr3g0103641 | 75.472 | 159 | 28 | 1 | 243 | 390 | 3 | 161 | 1.27e-81 | 247 |
| Msa0508560 | MtrunA17_Chr3g0103631 | 71.605 | 162 | 41 | 1 | 100 | 256 | 1 | 162 | 3.47e-79 | 241 |
| Msa0508560 | MtrunA17_Chr3g0114581 | 32.423 | 293 | 176 | 6 | 113 | 387 | 19 | 307 | 5.57e-43 | 153 |
| Msa0508560 | MtrunA17_Chr1g0160071 | 32.423 | 293 | 176 | 6 | 113 | 387 | 18 | 306 | 3.04e-42 | 151 |
| Msa0508560 | MtrunA17_Chr2g0307091 | 31.633 | 294 | 175 | 7 | 113 | 386 | 18 | 305 | 1.72e-30 | 119 |
| Msa0508560 | MtrunA17_Chr7g0270591 | 30.690 | 290 | 169 | 8 | 122 | 388 | 28 | 308 | 1.12e-23 | 101 |
| Msa0508560 | MtrunA17_Chr3g0137921 | 28.716 | 296 | 181 | 9 | 113 | 386 | 22 | 309 | 2.29e-22 | 97.1 |
| Msa0508560 | MtrunA17_Chr4g0063601 | 28.912 | 294 | 155 | 9 | 113 | 386 | 18 | 277 | 1.26e-18 | 85.9 |
| Msa0508560 | MtrunA17_Chr4g0069261 | 29.965 | 287 | 175 | 7 | 122 | 388 | 24 | 304 | 1.05e-17 | 84.0 |
| Msa0508560 | MtrunA17_Chr4g0058971 | 27.575 | 301 | 182 | 11 | 112 | 387 | 88 | 377 | 1.73e-15 | 77.4 |
| Msa0508560 | MtrunA17_Chr3g0117501 | 25.893 | 336 | 217 | 9 | 70 | 387 | 81 | 402 | 1.21e-13 | 72.0 |
| Msa0508560 | MtrunA17_Chr2g0312911 | 22.297 | 296 | 194 | 7 | 122 | 391 | 24 | 309 | 1.39e-13 | 71.2 |
| Msa0508560 | MtrunA17_Chr4g0046561 | 28.247 | 308 | 176 | 14 | 116 | 391 | 106 | 400 | 1.53e-13 | 71.6 |
| Msa0508560 | MtrunA17_Chr3g0097931 | 23.053 | 321 | 218 | 10 | 88 | 387 | 89 | 401 | 7.89e-13 | 69.3 |
| Msa0508560 | MtrunA17_Chr2g0298931 | 30.601 | 183 | 117 | 6 | 121 | 297 | 67 | 245 | 8.01e-13 | 69.3 |
| Msa0508560 | MtrunA17_Chr6g0449891 | 28.037 | 321 | 203 | 10 | 90 | 387 | 93 | 408 | 1.36e-12 | 68.9 |
| Msa0508560 | MtrunA17_Chr5g0419001 | 26.910 | 301 | 182 | 13 | 116 | 388 | 111 | 401 | 3.12e-12 | 67.8 |
| Msa0508560 | MtrunA17_Chr2g0288011 | 23.099 | 342 | 223 | 12 | 70 | 388 | 72 | 396 | 5.93e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508560 | AT3G11320.1 | 86.230 | 305 | 26 | 2 | 102 | 390 | 4 | 308 | 0.0 | 523 |
| Msa0508560 | AT5G05820.1 | 84.416 | 308 | 31 | 3 | 100 | 390 | 1 | 308 | 0.0 | 512 |
| Msa0508560 | AT3G10290.1 | 62.539 | 323 | 102 | 3 | 87 | 390 | 33 | 355 | 1.58e-139 | 402 |
| Msa0508560 | AT5G04160.1 | 65.886 | 299 | 86 | 2 | 108 | 390 | 11 | 309 | 4.33e-139 | 399 |
| Msa0508560 | AT1G12500.1 | 60.726 | 303 | 103 | 2 | 104 | 390 | 54 | 356 | 2.35e-121 | 356 |
| Msa0508560 | AT1G21870.1 | 34.551 | 301 | 175 | 7 | 105 | 387 | 11 | 307 | 4.42e-45 | 159 |
| Msa0508560 | AT1G77610.1 | 32.877 | 292 | 176 | 5 | 113 | 387 | 13 | 301 | 4.42e-43 | 153 |
| Msa0508560 | AT5G25400.1 | 30.743 | 296 | 175 | 9 | 113 | 386 | 22 | 309 | 4.00e-26 | 108 |
| Msa0508560 | AT5G11230.1 | 31.081 | 296 | 174 | 9 | 113 | 386 | 22 | 309 | 5.66e-26 | 107 |
| Msa0508560 | AT4G32390.1 | 30.405 | 296 | 176 | 9 | 113 | 386 | 22 | 309 | 1.58e-23 | 100 |
| Msa0508560 | AT2G25520.1 | 30.068 | 296 | 177 | 8 | 113 | 386 | 22 | 309 | 2.66e-22 | 97.4 |
| Msa0508560 | AT3G17430.2 | 30.662 | 287 | 173 | 7 | 122 | 388 | 25 | 305 | 5.22e-21 | 94.0 |
| Msa0508560 | AT3G17430.1 | 30.662 | 287 | 173 | 7 | 122 | 388 | 25 | 305 | 5.22e-21 | 94.0 |
| Msa0508560 | AT1G48230.1 | 30.241 | 291 | 169 | 9 | 122 | 388 | 25 | 305 | 1.20e-16 | 81.3 |
| Msa0508560 | AT1G53660.1 | 24.306 | 288 | 189 | 7 | 122 | 388 | 30 | 309 | 6.14e-16 | 78.6 |
| Msa0508560 | AT1G53660.3 | 24.306 | 288 | 189 | 7 | 122 | 388 | 48 | 327 | 7.24e-16 | 78.6 |
| Msa0508560 | AT1G53660.4 | 23.897 | 272 | 180 | 6 | 136 | 388 | 12 | 275 | 1.30e-14 | 74.3 |
| Msa0508560 | AT5G54800.1 | 23.659 | 317 | 210 | 10 | 93 | 386 | 80 | 387 | 5.92e-14 | 73.2 |
| Msa0508560 | AT5G17630.1 | 26.599 | 297 | 188 | 13 | 116 | 390 | 119 | 407 | 1.18e-13 | 72.4 |
| Msa0508560 | AT3G01550.1 | 26.708 | 322 | 205 | 10 | 90 | 387 | 59 | 373 | 2.33e-13 | 71.2 |
| Msa0508560 | AT3G14410.1 | 23.473 | 311 | 204 | 7 | 106 | 391 | 12 | 313 | 3.15e-13 | 70.5 |
| Msa0508560 | AT5G46110.1 | 27.609 | 297 | 183 | 12 | 116 | 390 | 115 | 401 | 4.89e-13 | 70.5 |
| Msa0508560 | AT5G46110.4 | 27.609 | 297 | 183 | 12 | 116 | 390 | 115 | 401 | 4.94e-13 | 70.5 |
| Msa0508560 | AT5G46110.2 | 27.609 | 297 | 183 | 12 | 116 | 390 | 2 | 288 | 5.78e-13 | 69.3 |
| Msa0508560 | AT1G61800.2 | 22.013 | 318 | 212 | 10 | 93 | 389 | 88 | 390 | 1.06e-11 | 66.6 |
| Msa0508560 | AT1G61800.1 | 22.152 | 316 | 210 | 10 | 93 | 387 | 88 | 388 | 1.08e-11 | 66.2 |
| Msa0508560 | AT1G53660.5 | 24.215 | 223 | 148 | 4 | 179 | 388 | 1 | 215 | 2.45e-11 | 63.9 |
| Msa0508560 | AT1G53660.2 | 25.843 | 178 | 124 | 3 | 122 | 291 | 48 | 225 | 2.94e-11 | 63.5 |
| Msa0508560 | AT1G48230.2 | 30.435 | 230 | 133 | 7 | 176 | 388 | 13 | 232 | 3.41e-11 | 63.9 |
| Msa0508560 | AT5G33320.1 | 26.452 | 310 | 193 | 10 | 102 | 386 | 100 | 399 | 4.03e-11 | 64.7 |
Find 96 sgRNAs with CRISPR-Local
Find 465 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCAAGTTTCCATTTATT+TGG | 0.112862 | 3_4:+56659886 | Msa0508560:CDS |
| TTTCTCTACTTAAGCATTTC+AGG | 0.137935 | 3_4:+56662338 | Msa0508560:three_prime_UTR |
| ACCCTTGTTCCTGTTGTTAC+TGG | 0.191940 | 3_4:+56658761 | Msa0508560:CDS |
| CACTATCACCACATCTTAAT+TGG | 0.227869 | 3_4:+56654319 | Msa0508560:CDS |
| AAACTGGGTTTCTAAATATT+AGG | 0.258669 | 3_4:-56661975 | None:intergenic |
| ATACAATGAATCCAAATAAA+TGG | 0.258981 | 3_4:-56659897 | None:intergenic |
| TCTTCCCGCCACACTTATAA+TGG | 0.261442 | 3_4:+56660133 | Msa0508560:CDS |
| ATCATACCAGTGACTGAAAC+TGG | 0.266685 | 3_4:-56661991 | None:intergenic |
| TTCTGTGTTTCTGTTGTGTT+TGG | 0.269088 | 3_4:+56658614 | Msa0508560:CDS |
| TGAGGAAAGAGTTGTAAAAT+TGG | 0.285083 | 3_4:+56662393 | Msa0508560:three_prime_UTR |
| GAGACGATCCCAAGATAATT+TGG | 0.307870 | 3_4:+56660192 | Msa0508560:CDS |
| ATTGGTCAGGTTGACAAAAT+AGG | 0.310667 | 3_4:-56660240 | None:intergenic |
| AAGTATTTGTTGAGCAACTA+TGG | 0.329770 | 3_4:+56658443 | Msa0508560:CDS |
| TCATCAAATTATTATTCATA+TGG | 0.349278 | 3_4:+56654381 | Msa0508560:CDS |
| TCTTCCTGTATCGTTTAATC+AGG | 0.373216 | 3_4:+56658655 | Msa0508560:CDS |
| TAGCAGATACCAAATTATCT+TGG | 0.373919 | 3_4:-56660201 | None:intergenic |
| GATAATCGGATCATCATTCT+TGG | 0.383960 | 3_4:+56662076 | Msa0508560:exon |
| GAGATAGCTATGACAGTTGC+TGG | 0.394146 | 3_4:-56654127 | None:intergenic |
| GTCACTGGTATGATGGGTTA+TGG | 0.398626 | 3_4:+56662000 | Msa0508560:CDS |
| TCAACACGTTTCTTCACAAT+AGG | 0.398972 | 3_4:+56658371 | Msa0508560:CDS |
| AAAGCGAACAAAGGGATAAT+CGG | 0.420587 | 3_4:+56662062 | Msa0508560:exon |
| CAGGTTTCTGAAGATCAAAA+AGG | 0.421249 | 3_4:+56658326 | Msa0508560:intron |
| AGTTTCAGTCACTGGTATGA+TGG | 0.426605 | 3_4:+56661993 | Msa0508560:CDS |
| TCTGTGTTTCTGTTGTGTTT+GGG | 0.427601 | 3_4:+56658615 | Msa0508560:CDS |
| AGCTGATTCCTACAGGTACT+AGG | 0.431361 | 3_4:+56661916 | Msa0508560:intron |
| CTGGTGTTGTTATTGCTAGT+GGG | 0.433213 | 3_4:+56658780 | Msa0508560:CDS |
| TCATGGTTGGCCACTTGAAA+AGG | 0.435118 | 3_4:+56654467 | Msa0508560:CDS |
| CTATGCAAACTATTCGATCC+AGG | 0.440876 | 3_4:+56658555 | Msa0508560:CDS |
| AGAGTCAAAGATTCAGAGTC+TGG | 0.446988 | 3_4:-56662192 | None:intergenic |
| ACATAGAAAGCCTCATTGAA+TGG | 0.448150 | 3_4:+56662237 | Msa0508560:three_prime_UTR |
| TCCTTCAGAAACATTCACTA+TGG | 0.451405 | 3_4:-56654421 | None:intergenic |
| GGTTATGGACTCACAGTCTT+CGG | 0.464078 | 3_4:+56662015 | Msa0508560:CDS |
| TCGTGGATTTGCATCTTCAA+TGG | 0.465831 | 3_4:+56654084 | Msa0508560:exon |
| AGAAACCCAGTTTCAGTCAC+TGG | 0.466134 | 3_4:+56661985 | Msa0508560:CDS |
| CCTCCTTTACATGGCTCCAA+TGG | 0.467277 | 3_4:+56660097 | Msa0508560:CDS |
| AATGAATCTCCTCCTTTACA+TGG | 0.468540 | 3_4:+56660088 | Msa0508560:CDS |
| AGCAGATACCAAATTATCTT+GGG | 0.471217 | 3_4:-56660200 | None:intergenic |
| TTACATGGCTCCAATGGCTG+TGG | 0.474205 | 3_4:+56660103 | Msa0508560:CDS |
| CTCTCCCTCAATCTCATGGT+TGG | 0.484941 | 3_4:+56654454 | Msa0508560:CDS |
| AGAAGGAAAACCACAGCCAT+TGG | 0.484967 | 3_4:-56660113 | None:intergenic |
| ATCTCTCTCCCTCAATCTCA+TGG | 0.488796 | 3_4:+56654450 | Msa0508560:CDS |
| TTCAATGAGGCTTTCTATGT+GGG | 0.497593 | 3_4:-56662234 | None:intergenic |
| AATCCAAATAAATGGAAACT+TGG | 0.501652 | 3_4:-56659889 | None:intergenic |
| GCAACTGTCATAGCTATCTC+TGG | 0.504491 | 3_4:+56654130 | Msa0508560:CDS |
| AAAAGGTTCTAAGACAATGA+AGG | 0.505897 | 3_4:+56658343 | Msa0508560:CDS |
| ATATTCAAAGGCATATTCCA+TGG | 0.507241 | 3_4:+56654343 | Msa0508560:CDS |
| ATAACAACACCAGTAACAAC+AGG | 0.507549 | 3_4:-56658770 | None:intergenic |
| ACTGGTGTTGTTATTGCTAG+TGG | 0.510277 | 3_4:+56658779 | Msa0508560:CDS |
| ATCGCCTGATTAAACGATAC+AGG | 0.511296 | 3_4:-56658659 | None:intergenic |
| CATAGAAAGCCTCATTGAAT+GGG | 0.511830 | 3_4:+56662238 | Msa0508560:three_prime_UTR |
| TTATAAGTGTGGCGGGAAGA+AGG | 0.513711 | 3_4:-56660130 | None:intergenic |
| CACCAGTAACAACAGGAACA+AGG | 0.523976 | 3_4:-56658763 | None:intergenic |
| AGTGGCCAACCATGAGATTG+AGG | 0.525477 | 3_4:-56654459 | None:intergenic |
| TTCTAAACAAATTCACCTCA+TGG | 0.525746 | 3_4:-56662160 | None:intergenic |
| TTAGTTAAACTTGTCACTCG+TGG | 0.530056 | 3_4:+56654067 | None:intergenic |
| GCTGATTCCTACAGGTACTA+GGG | 0.530609 | 3_4:+56661917 | Msa0508560:intron |
| ATTCAATGAGGCTTTCTATG+TGG | 0.532417 | 3_4:-56662235 | None:intergenic |
| ATAATCGGATCATCATTCTT+GGG | 0.533628 | 3_4:+56662077 | Msa0508560:exon |
| ATCTTAATTGGAATATTCAA+AGG | 0.535085 | 3_4:+56654331 | Msa0508560:CDS |
| TTGGTATCTGCTATTTAACT+CGG | 0.538514 | 3_4:+56660211 | Msa0508560:CDS |
| GTTTCAGTCACTGGTATGAT+GGG | 0.539473 | 3_4:+56661994 | Msa0508560:CDS |
| GTATCGTTTAATCAGGCGAT+TGG | 0.541515 | 3_4:+56658662 | Msa0508560:CDS |
| CAGCCATTGGAGCCATGTAA+AGG | 0.544406 | 3_4:-56660100 | None:intergenic |
| GCCCTAAAATCAGTGCTACA+AGG | 0.550043 | 3_4:+56659943 | Msa0508560:CDS |
| CAATAGAAGAACACCAATGT+TGG | 0.550271 | 3_4:-56658417 | None:intergenic |
| TTCTTCCATTATAAGTGTGG+CGG | 0.557091 | 3_4:-56660138 | None:intergenic |
| GTGGCCAACCATGAGATTGA+GGG | 0.558110 | 3_4:-56654458 | None:intergenic |
| TATTCAAAGGCATATTCCAT+GGG | 0.558572 | 3_4:+56654344 | Msa0508560:CDS |
| TCTTCCATTATAAGTGTGGC+GGG | 0.560381 | 3_4:-56660137 | None:intergenic |
| TCAGGTAGGAGGAAGAAACT+TGG | 0.562941 | 3_4:+56654267 | Msa0508560:intron |
| TGAATATTCCAATTAAGATG+TGG | 0.568671 | 3_4:-56654327 | None:intergenic |
| AAAGGTTCTAAGACAATGAA+GGG | 0.568749 | 3_4:+56658344 | Msa0508560:CDS |
| TGCTTGCTATAACTCAAAAG+AGG | 0.574953 | 3_4:-56662262 | None:intergenic |
| ACTTATAATGGAAGAAAATG+TGG | 0.577031 | 3_4:+56660145 | Msa0508560:CDS |
| TTAGCTATGTTGCTATAGCA+TGG | 0.581935 | 3_4:+56658519 | Msa0508560:CDS |
| TGGTGTTGTTATTGCTAGTG+GGG | 0.582609 | 3_4:+56658781 | Msa0508560:CDS |
| TATGCAAACTATTCGATCCA+GGG | 0.587277 | 3_4:+56658556 | Msa0508560:CDS |
| ATGAGATTGAGGGAGAGAGA+TGG | 0.595186 | 3_4:-56654448 | None:intergenic |
| CAGGTACTAGGGAATGCTAA+AGG | 0.600457 | 3_4:+56661928 | Msa0508560:intron |
| GAAGTAGTCAAAGAAACCCA+TGG | 0.606705 | 3_4:-56654360 | None:intergenic |
| CTGGATCGAATAGTTTGCAT+AGG | 0.611498 | 3_4:-56658554 | None:intergenic |
| CAATAGGTCTTGTAGCAGCA+TGG | 0.617332 | 3_4:+56658387 | Msa0508560:CDS |
| ACCAGTAACAACAGGAACAA+GGG | 0.620205 | 3_4:-56658762 | None:intergenic |
| TCATACCAGTGACTGAAACT+GGG | 0.622203 | 3_4:-56661990 | None:intergenic |
| GCCATAGTGAATGTTTCTGA+AGG | 0.623656 | 3_4:+56654420 | Msa0508560:CDS |
| CCATTGGAGCCATGTAAAGG+AGG | 0.626569 | 3_4:-56660097 | None:intergenic |
| ATAGTGAATGTTTCTGAAGG+AGG | 0.632786 | 3_4:+56654423 | Msa0508560:CDS |
| GCATGGTATTCATCCAACAT+TGG | 0.639937 | 3_4:+56658404 | Msa0508560:CDS |
| TCAATGAGGCTTTCTATGTG+GGG | 0.645791 | 3_4:-56662233 | None:intergenic |
| ATAATGGAAGAAAATGTGGT+CGG | 0.647373 | 3_4:+56660149 | Msa0508560:CDS |
| AAATTCACCTCATGGAAGTG+AGG | 0.648634 | 3_4:-56662152 | None:intergenic |
| AACTTGGTGAAATATCTGCA+AGG | 0.661245 | 3_4:+56654283 | Msa0508560:CDS |
| AAAAGAGGACCCATTCAATG+AGG | 0.676341 | 3_4:-56662247 | None:intergenic |
| AAATGTGGTCGGAATCACGT+TGG | 0.686602 | 3_4:+56660160 | Msa0508560:CDS |
| ACACGCAGTCATATGACACA+TGG | 0.688652 | 3_4:-56658489 | None:intergenic |
| CAGACAACCTCACTTCCATG+AGG | 0.765720 | 3_4:+56662145 | Msa0508560:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAAAAAAAAAATTA+AGG | - | chr3_4:56654580-56654599 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAAAATTATA+GGG | - | chr3_4:56657085-56657104 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAAAAATTAT+AGG | - | chr3_4:56657086-56657105 | None:intergenic | 0.0% |
| !! | ATAAGTTAAAAAACTAAAAA+TGG | + | chr3_4:56655288-56655307 | Msa0508560:intron | 10.0% |
| !! | TAGATAATTAAAGATATTAA+CGG | + | chr3_4:56655531-56655550 | Msa0508560:intron | 10.0% |
| !! | TATTTAGTAAAAATAAATTG+AGG | - | chr3_4:56656719-56656738 | None:intergenic | 10.0% |
| !!! | AATATATTTTTCAAAACTAA+AGG | - | chr3_4:56656870-56656889 | None:intergenic | 10.0% |
| !! | TTTAGTTAATAAAAATGTAA+CGG | - | chr3_4:56657228-56657247 | None:intergenic | 10.0% |
| !!! | TTTCTTTCAAAAAATATTTT+TGG | - | chr3_4:56657265-56657284 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTATTTCAATTG+CGG | - | chr3_4:56657367-56657386 | None:intergenic | 10.0% |
| !!! | TAAAAAATAAAAAGCATTTT+TGG | - | chr3_4:56657428-56657447 | None:intergenic | 10.0% |
| !! | AGTGATAAAAATAAATTAAT+CGG | - | chr3_4:56657519-56657538 | None:intergenic | 10.0% |
| !!! | AAACTAATTGTTTTATTTTT+TGG | + | chr3_4:56659999-56660018 | Msa0508560:intron | 10.0% |
| !! | AAAGTTAAATTAAATATAGA+AGG | - | chr3_4:56660493-56660512 | None:intergenic | 10.0% |
| !! | AAATAACAGATAAAAAATAA+AGG | - | chr3_4:56660633-56660652 | None:intergenic | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | + | chr3_4:56660828-56660847 | Msa0508560:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | - | chr3_4:56660876-56660895 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | - | chr3_4:56660877-56660896 | None:intergenic | 10.0% |
| !! | TCATCAAATTATTATTCATA+TGG | + | chr3_4:56654381-56654400 | Msa0508560:CDS | 15.0% |
| !! | ATAAGATAAATACAAAATGT+GGG | - | chr3_4:56655240-56655259 | None:intergenic | 15.0% |
| !!! | ACATTTTGTATTTATCTTAT+GGG | + | chr3_4:56655240-56655259 | Msa0508560:intron | 15.0% |
| !!! | TAAACATAGAAACTTTTTAT+TGG | - | chr3_4:56655643-56655662 | None:intergenic | 15.0% |
| !! | ATTTAACATAGAATAAGATA+AGG | - | chr3_4:56655706-56655725 | None:intergenic | 15.0% |
| !!! | TAAATTTTACTTTCATTTGT+TGG | - | chr3_4:56656274-56656293 | None:intergenic | 15.0% |
| !!! | CATCCTTTAATATATATTTT+TGG | - | chr3_4:56657490-56657509 | None:intergenic | 15.0% |
| !!! | GATAAAATAAGACTTTTTTA+AGG | + | chr3_4:56657825-56657844 | Msa0508560:intron | 15.0% |
| !!! | TTATATTATGACTTTTAAGA+GGG | + | chr3_4:56658718-56658737 | Msa0508560:CDS | 15.0% |
| !!! | ATTTGTTAAATGGATTTATA+TGG | + | chr3_4:56659323-56659342 | Msa0508560:intron | 15.0% |
| !! | TGTGAAAAATAAAAATATTC+TGG | + | chr3_4:56659822-56659841 | Msa0508560:intron | 15.0% |
| !!! | TTCAAGTTATATATTCAAAT+CGG | + | chr3_4:56660026-56660045 | Msa0508560:intron | 15.0% |
| !! | ACTATTAAGACTTAAAATTT+AGG | + | chr3_4:56660345-56660364 | Msa0508560:intron | 15.0% |
| !!! | AAACTCTTTAATTTAATACT+CGG | + | chr3_4:56660724-56660743 | Msa0508560:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | + | chr3_4:56660762-56660781 | Msa0508560:intron | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | - | chr3_4:56660800-56660819 | None:intergenic | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | + | chr3_4:56661161-56661180 | Msa0508560:intron | 15.0% |
| !! | GTAAAAATTAAAATGAAACA+AGG | - | chr3_4:56661222-56661241 | None:intergenic | 15.0% |
| !!! | ATTAAAAGTAATTTGAAATG+TGG | - | chr3_4:56661682-56661701 | None:intergenic | 15.0% |
| !! | ATCTTAATTGGAATATTCAA+AGG | + | chr3_4:56654331-56654350 | Msa0508560:CDS | 20.0% |
| !!! | GAAAAGTTGATGTTTTTTTA+AGG | - | chr3_4:56654804-56654823 | None:intergenic | 20.0% |
| !! | AATGATTCTACAAAAACTAT+TGG | - | chr3_4:56654847-56654866 | None:intergenic | 20.0% |
| !!! | ATAAGGATATATTTTGGATT+GGG | - | chr3_4:56655155-56655174 | None:intergenic | 20.0% |
| !!! | AATAAGGATATATTTTGGAT+TGG | - | chr3_4:56655156-56655175 | None:intergenic | 20.0% |
| !! | AATCCAAAATATATCCTTAT+TGG | + | chr3_4:56655155-56655174 | Msa0508560:intron | 20.0% |
| !!! | TTAATATTTTTGGGATCAAA+AGG | - | chr3_4:56655198-56655217 | None:intergenic | 20.0% |
| !! | CATAAGATAAATACAAAATG+TGG | - | chr3_4:56655241-56655260 | None:intergenic | 20.0% |
| !!! | CACATTTTGTATTTATCTTA+TGG | + | chr3_4:56655239-56655258 | Msa0508560:intron | 20.0% |
| !!! | ATTGTACATGTATTTTGAAA+CGG | - | chr3_4:56655368-56655387 | None:intergenic | 20.0% |
| !!! | AGTTTGACTTTGAATTTTTT+AGG | - | chr3_4:56655763-56655782 | None:intergenic | 20.0% |
| !!! | GAAGAAAAAATATCTTGTTT+TGG | - | chr3_4:56656300-56656319 | None:intergenic | 20.0% |
| !! | TGTGAAAACAAAGAAATAAA+AGG | - | chr3_4:56656481-56656500 | None:intergenic | 20.0% |
| !!! | AATTGCAATAATTTCTTTTG+AGG | + | chr3_4:56656819-56656838 | Msa0508560:intron | 20.0% |
| !!! | CCACTATTTTTACAAAATAA+GGG | - | chr3_4:56656915-56656934 | None:intergenic | 20.0% |
| !!! | CCTTATTTTGTAAAAATAGT+GGG | + | chr3_4:56656913-56656932 | Msa0508560:intron | 20.0% |
| !!! | GTACATATTTGACTTTTTTT+GGG | - | chr3_4:56657023-56657042 | None:intergenic | 20.0% |
| !!! | AGTACATATTTGACTTTTTT+TGG | - | chr3_4:56657024-56657043 | None:intergenic | 20.0% |
| !! | AAAGTCAAATATGTACTATT+TGG | + | chr3_4:56657027-56657046 | Msa0508560:intron | 20.0% |
| !!! | TACAAGTTTTTAAAAGAAGT+TGG | - | chr3_4:56657591-56657610 | None:intergenic | 20.0% |
| !! | TAAAATCAACTTGTAAAATC+AGG | + | chr3_4:56657609-56657628 | Msa0508560:intron | 20.0% |
| !! | AAAATCAACTTGTAAAATCA+GGG | + | chr3_4:56657610-56657629 | Msa0508560:intron | 20.0% |
| !! | TCTAATATATGTATTCTTTC+TGG | + | chr3_4:56657672-56657691 | Msa0508560:intron | 20.0% |
| !!! | ATTTAAAGCTATATAGTTGA+AGG | - | chr3_4:56657981-56658000 | None:intergenic | 20.0% |
| !! | AGTCATAATATAAGCAAAAA+TGG | - | chr3_4:56658711-56658730 | None:intergenic | 20.0% |
| !!! | CTTATATTATGACTTTTAAG+AGG | + | chr3_4:56658717-56658736 | Msa0508560:CDS | 20.0% |
| !!! | TTCAGTTTTTTAATTGTTGA+TGG | + | chr3_4:56658856-56658875 | Msa0508560:intron | 20.0% |
| !! | AAAATGATATTGTGTATTGT+TGG | + | chr3_4:56658882-56658901 | Msa0508560:intron | 20.0% |
| !!! | CATCAAATTTTATCTAGTTT+AGG | + | chr3_4:56659161-56659180 | Msa0508560:intron | 20.0% |
| !!! | ATGTTTTTTTTTCTTCAATG+AGG | + | chr3_4:56659299-56659318 | Msa0508560:intron | 20.0% |
| !!! | TAAATGGATTTATATGGTTT+AGG | + | chr3_4:56659329-56659348 | Msa0508560:intron | 20.0% |
| !! | ATACAATGAATCCAAATAAA+TGG | - | chr3_4:56659900-56659919 | None:intergenic | 20.0% |
| !! | AACTAAATCTTAATCTCATT+GGG | - | chr3_4:56660441-56660460 | None:intergenic | 20.0% |
| !! | TAAATTAATAATGTCATGAC+CGG | - | chr3_4:56661183-56661202 | None:intergenic | 20.0% |
| !! | AAATGAAATCACAACTAAAT+GGG | - | chr3_4:56661501-56661520 | None:intergenic | 20.0% |
| !! | AATGTATACAATTAGTGTTT+AGG | + | chr3_4:56661616-56661635 | Msa0508560:intron | 20.0% |
| !! | TGTCATAAATATAAGTAGAT+GGG | + | chr3_4:56661768-56661787 | Msa0508560:intron | 20.0% |
| !! | ATTTTGCTTAAGGATCATAT+AGG | - | chr3_4:56654208-56654227 | None:intergenic | 25.0% |
| ! | ACATGAAGAATTGATCTATT+TGG | + | chr3_4:56654239-56654258 | Msa0508560:intron | 25.0% |
| !!! | TTGATCTATTTGGTTTTTTC+AGG | + | chr3_4:56654249-56654268 | Msa0508560:intron | 25.0% |
| ! | TGAATATTCCAATTAAGATG+TGG | - | chr3_4:56654330-56654349 | None:intergenic | 25.0% |
| ! | AAATACTAAAATGTCTCCAA+CGG | - | chr3_4:56655048-56655067 | None:intergenic | 25.0% |
| ! | TTAGTATTTCATGTGTTTCT+AGG | + | chr3_4:56655059-56655078 | Msa0508560:intron | 25.0% |
| !! | GAACCAATAAGGATATATTT+TGG | - | chr3_4:56655161-56655180 | None:intergenic | 25.0% |
| !! | CCAGGACTTTTAATATTTTT+GGG | - | chr3_4:56655207-56655226 | None:intergenic | 25.0% |
| !! | ACCAGGACTTTTAATATTTT+TGG | - | chr3_4:56655208-56655227 | None:intergenic | 25.0% |
| !!! | TTTTTTAACTTATGCCCTTA+GGG | - | chr3_4:56655281-56655300 | None:intergenic | 25.0% |
| !!! | AACATGTATTTTGAAACAGA+GGG | + | chr3_4:56655593-56655612 | Msa0508560:intron | 25.0% |
| ! | AGTCAAACTTTGACAAAAAA+AGG | + | chr3_4:56655774-56655793 | Msa0508560:intron | 25.0% |
| ! | ATAAGTACTTACATGACAAA+TGG | + | chr3_4:56655870-56655889 | Msa0508560:intron | 25.0% |
| ! | TAAGTACTTACATGACAAAT+GGG | + | chr3_4:56655871-56655890 | Msa0508560:intron | 25.0% |
| !! | GAAAAAATTCAAAAGCGTAT+TGG | - | chr3_4:56655935-56655954 | None:intergenic | 25.0% |
| !!! | GTTACTTTAGGATATTTCTT+AGG | - | chr3_4:56655975-56655994 | None:intergenic | 25.0% |
| !!! | TATGTTATTCAGTTTTGTCT+TGG | - | chr3_4:56655997-56656016 | None:intergenic | 25.0% |
| ! | ATGTTTCGACTAAAATTGAA+CGG | + | chr3_4:56656137-56656156 | Msa0508560:intron | 25.0% |
| !! | CATTATGATTTTGTGATTGT+AGG | + | chr3_4:56656173-56656192 | Msa0508560:intron | 25.0% |
| !! | CAAAATAGGTTGAAAAGTTT+AGG | + | chr3_4:56656364-56656383 | Msa0508560:intron | 25.0% |
| !! | ACATTAATGTTACTTAGGTT+AGG | - | chr3_4:56656547-56656566 | None:intergenic | 25.0% |
| !! | TGCTTACATTAATGTTACTT+AGG | - | chr3_4:56656552-56656571 | None:intergenic | 25.0% |
| ! | TAATAAATATTCCAAAGTCG+CGG | + | chr3_4:56656635-56656654 | Msa0508560:intron | 25.0% |
| !! | ATAAGGGAAGTATAATTTGA+GGG | - | chr3_4:56656899-56656918 | None:intergenic | 25.0% |
| !! | AATAAGGGAAGTATAATTTG+AGG | - | chr3_4:56656900-56656919 | None:intergenic | 25.0% |
| !!! | CCCTTATTTTGTAAAAATAG+TGG | + | chr3_4:56656912-56656931 | Msa0508560:intron | 25.0% |
| !!! | CCCACTATTTTTACAAAATA+AGG | - | chr3_4:56656916-56656935 | None:intergenic | 25.0% |
| !! | CTTTTGCAATTTACTTATCA+TGG | - | chr3_4:56657203-56657222 | None:intergenic | 25.0% |
| ! | TGTAGTGTAGAAGTTAAATT+TGG | - | chr3_4:56657296-56657315 | None:intergenic | 25.0% |
| ! | ATTGAAAATAGTGATGATAG+AGG | - | chr3_4:56657404-56657423 | None:intergenic | 25.0% |
| ! | AATGCTAAATGCCATAAATA+AGG | + | chr3_4:56657463-56657482 | Msa0508560:intron | 25.0% |
| ! | ATGCTAAATGCCATAAATAA+GGG | + | chr3_4:56657464-56657483 | Msa0508560:intron | 25.0% |
| !!! | ATATTTTTGGCCCTTATTTA+TGG | - | chr3_4:56657477-56657496 | None:intergenic | 25.0% |
| ! | GGGCCAAAAATATATATTAA+AGG | + | chr3_4:56657484-56657503 | Msa0508560:intron | 25.0% |
| !! | AACAAACATCGTTAGAATTT+TGG | + | chr3_4:56657539-56657558 | Msa0508560:intron | 25.0% |
| !! | TGTTAGTTAATTGACTCTTT+AGG | - | chr3_4:56657876-56657895 | None:intergenic | 25.0% |
| !!! | ACCTTCAACTTTTTTTTTCA+TGG | + | chr3_4:56657916-56657935 | Msa0508560:intron | 25.0% |
| ! | TCCATGAAAAAAAAAGTTGA+AGG | - | chr3_4:56657920-56657939 | None:intergenic | 25.0% |
| ! | GAGAGAAGAAGAAATAAATT+AGG | - | chr3_4:56658011-56658030 | None:intergenic | 25.0% |
| !!! | AAGTTTGTGTTTTTGTTTTG+AGG | - | chr3_4:56658106-56658125 | None:intergenic | 25.0% |
| !!! | GAAAAAGTTGTTGACTTTAA+CGG | - | chr3_4:56658238-56658257 | None:intergenic | 25.0% |
| !! | TCATGATTGTGATTTGAAAT+GGG | - | chr3_4:56658298-56658317 | None:intergenic | 25.0% |
| ! | TTCATGATTGTGATTTGAAA+TGG | - | chr3_4:56658299-56658318 | None:intergenic | 25.0% |
| ! | GAAACAAAAACAATGAACAA+GGG | - | chr3_4:56658825-56658844 | None:intergenic | 25.0% |
| ! | AGAAACAAAAACAATGAACA+AGG | - | chr3_4:56658826-56658845 | None:intergenic | 25.0% |
| !!! | TTATAGGGGAGAATTTTTTT+AGG | + | chr3_4:56658918-56658937 | Msa0508560:intron | 25.0% |
| ! | AATTGTATTTAGTGTATGCT+TGG | + | chr3_4:56658970-56658989 | Msa0508560:intron | 25.0% |
| ! | ATGATATTGTGCATTGTTAA+TGG | + | chr3_4:56659081-56659100 | Msa0508560:intron | 25.0% |
| ! | TGATATTGTGCATTGTTAAT+GGG | + | chr3_4:56659082-56659101 | Msa0508560:intron | 25.0% |
| !! | TTATCTAGTTTAGGTTTGTT+TGG | + | chr3_4:56659170-56659189 | Msa0508560:intron | 25.0% |
| !! | TATCTAGTTTAGGTTTGTTT+GGG | + | chr3_4:56659171-56659190 | Msa0508560:intron | 25.0% |
| ! | TGTAAGATTATGTGTTGAAT+TGG | + | chr3_4:56659213-56659232 | Msa0508560:intron | 25.0% |
| !!! | TCAATGAGGAATTTGTTAAA+TGG | + | chr3_4:56659313-56659332 | Msa0508560:intron | 25.0% |
| !!! | ATGATACTATTTGTTTTACC+AGG | + | chr3_4:56659641-56659660 | Msa0508560:intron | 25.0% |
| !!! | TGATACTATTTGTTTTACCA+GGG | + | chr3_4:56659642-56659661 | Msa0508560:intron | 25.0% |
| ! | AATCCAAATAAATGGAAACT+TGG | - | chr3_4:56659892-56659911 | None:intergenic | 25.0% |
| !! | ATTTTCTTCCATTATAAGTG+TGG | - | chr3_4:56660144-56660163 | None:intergenic | 25.0% |
| !! | ACTTATAATGGAAGAAAATG+TGG | + | chr3_4:56660145-56660164 | Msa0508560:CDS | 25.0% |
| ! | GTCTTAATAGTTTCAAAAGA+GGG | - | chr3_4:56660336-56660355 | None:intergenic | 25.0% |
| ! | AGTCTTAATAGTTTCAAAAG+AGG | - | chr3_4:56660337-56660356 | None:intergenic | 25.0% |
| ! | CAACTAAATCTTAATCTCAT+TGG | - | chr3_4:56660442-56660461 | None:intergenic | 25.0% |
| ! | ATATAGAAGGAAAACAAAGA+AGG | - | chr3_4:56660480-56660499 | None:intergenic | 25.0% |
| ! | TTTGTATCACAATATTAGCA+TGG | + | chr3_4:56660598-56660617 | Msa0508560:intron | 25.0% |
| !!! | TGTTATTTTGTAATGTGCAT+TGG | + | chr3_4:56660645-56660664 | Msa0508560:intron | 25.0% |
| !!! | AACTAATTTGCCTTTTTGTT+TGG | + | chr3_4:56661068-56661087 | Msa0508560:intron | 25.0% |
| ! | AAACTAGACTAAATATTGCT+AGG | - | chr3_4:56661249-56661268 | None:intergenic | 25.0% |
| !!! | ATTAATTTTGATGACATCTC+TGG | - | chr3_4:56661319-56661338 | None:intergenic | 25.0% |
| ! | GATGTCATCAAAATTAATTC+AGG | + | chr3_4:56661321-56661340 | Msa0508560:intron | 25.0% |
| ! | CAAATGAAATCACAACTAAA+TGG | - | chr3_4:56661502-56661521 | None:intergenic | 25.0% |
| ! | TCAAATATTTATGTAGCTGA+TGG | - | chr3_4:56661528-56661547 | None:intergenic | 25.0% |
| ! | AGCTACATAAATATTTGATC+AGG | + | chr3_4:56661530-56661549 | Msa0508560:intron | 25.0% |
| ! | GTGTCATAAATATAAGTAGA+TGG | + | chr3_4:56661767-56661786 | Msa0508560:intron | 25.0% |
| ! | AAACTGGGTTTCTAAATATT+AGG | - | chr3_4:56661978-56661997 | None:intergenic | 25.0% |
| ! | TGATCACTTGATTTTGCTTA+AGG | - | chr3_4:56654218-56654237 | None:intergenic | 30.0% |
| !!! | TCTATTTGGTTTTTTCAGGT+AGG | + | chr3_4:56654253-56654272 | Msa0508560:intron | 30.0% |
| ! | ATATTCAAAGGCATATTCCA+TGG | + | chr3_4:56654343-56654362 | Msa0508560:CDS | 30.0% |
| ! | TATTCAAAGGCATATTCCAT+GGG | + | chr3_4:56654344-56654363 | Msa0508560:CDS | 30.0% |
| ! | TAAGTTGAAAGTGAGACTTT+AGG | - | chr3_4:56654714-56654733 | None:intergenic | 30.0% |
| !! | AGTCTTTTTCATGTGTTTCT+AGG | - | chr3_4:56654962-56654981 | None:intergenic | 30.0% |
| AAAAAGACTAAAAAGTCCAG+CGG | + | chr3_4:56654973-56654992 | Msa0508560:intron | 30.0% | |
| ACTTATAACTAGAAAACCGA+CGG | - | chr3_4:56655009-56655028 | None:intergenic | 30.0% | |
| !!! | GTTTTCTAGTTATAAGTCAG+CGG | + | chr3_4:56655012-56655031 | Msa0508560:intron | 30.0% |
| ATAAGGTTTAGGAACCAATA+AGG | - | chr3_4:56655172-56655191 | None:intergenic | 30.0% | |
| ! | TCAAAAGGAGTATAAGGTTT+AGG | - | chr3_4:56655183-56655202 | None:intergenic | 30.0% |
| CCCAAAAATATTAAAAGTCC+TGG | + | chr3_4:56655204-56655223 | Msa0508560:intron | 30.0% | |
| !!! | GTTTTTTAACTTATGCCCTT+AGG | - | chr3_4:56655282-56655301 | None:intergenic | 30.0% |
| !!! | TACATGTATTTTGAAACGGA+GGG | - | chr3_4:56655364-56655383 | None:intergenic | 30.0% |
| !!! | GAACATGTATTTTGAAACAG+AGG | + | chr3_4:56655592-56655611 | Msa0508560:intron | 30.0% |
| !! | AAATGTTAACTTGTGTCCTT+GGG | - | chr3_4:56655682-56655701 | None:intergenic | 30.0% |
| !! | AAAATGTTAACTTGTGTCCT+TGG | - | chr3_4:56655683-56655702 | None:intergenic | 30.0% |
| ! | GAATATTTAGGGTAGACATT+AGG | - | chr3_4:56655834-56655853 | None:intergenic | 30.0% |
| ACTTATTGTTAGCTAGGAAT+GGG | - | chr3_4:56655856-56655875 | None:intergenic | 30.0% | |
| TACTTATTGTTAGCTAGGAA+TGG | - | chr3_4:56655857-56655876 | None:intergenic | 30.0% | |
| GTAAGTACTTATTGTTAGCT+AGG | - | chr3_4:56655862-56655881 | None:intergenic | 30.0% | |
| ! | GATTTGAGCGAATTTTTGTT+TGG | + | chr3_4:56655893-56655912 | Msa0508560:intron | 30.0% |
| !! | AGTTTTGTCTTGGTTACTTT+AGG | - | chr3_4:56655987-56656006 | None:intergenic | 30.0% |
| !! | TAGGTTGGTTCAAGAAAATT+TGG | - | chr3_4:56656030-56656049 | None:intergenic | 30.0% |
| ATTTCCAACTACAATGAAGT+AGG | - | chr3_4:56656049-56656068 | None:intergenic | 30.0% | |
| ACTTCATTGTAGTTGGAAAT+TGG | + | chr3_4:56656049-56656068 | Msa0508560:intron | 30.0% | |
| CTTCATTGTAGTTGGAAATT+GGG | + | chr3_4:56656050-56656069 | Msa0508560:intron | 30.0% | |
| TTAATATTCTGCACGACAAT+TGG | - | chr3_4:56656209-56656228 | None:intergenic | 30.0% | |
| !!! | TTTCAACCTATTTTGACTTC+AGG | - | chr3_4:56656359-56656378 | None:intergenic | 30.0% |
| !! | TTTGTTTTCACATAAGAACG+TGG | + | chr3_4:56656489-56656508 | Msa0508560:intron | 30.0% |
| TATTAGGAATAGTCCAACTT+AGG | - | chr3_4:56656620-56656639 | None:intergenic | 30.0% | |
| !! | GCGACTTTGGAATATTTATT+AGG | - | chr3_4:56656636-56656655 | None:intergenic | 30.0% |
| AATAAATATTCCAAAGTCGC+GGG | + | chr3_4:56656636-56656655 | Msa0508560:intron | 30.0% | |
| ! | TAAGGGAAGTATAATTTGAG+GGG | - | chr3_4:56656898-56656917 | None:intergenic | 30.0% |
| TGTTGTAATTGTATGGTCAA+CGG | - | chr3_4:56657125-56657144 | None:intergenic | 30.0% | |
| TTGTGATTATGATGTGATGT+AGG | - | chr3_4:56657331-56657350 | None:intergenic | 30.0% | |
| ! | ACATCGTTAGAATTTTGGAT+TGG | + | chr3_4:56657544-56657563 | Msa0508560:intron | 30.0% |
| ! | CATCGTTAGAATTTTGGATT+GGG | + | chr3_4:56657545-56657564 | Msa0508560:intron | 30.0% |
| !!! | TTGTGTTTTTGTTTTGAGGA+TGG | - | chr3_4:56658102-56658121 | None:intergenic | 30.0% |
| ! | TTGTGATTTGAAATGGGTAA+TGG | - | chr3_4:56658292-56658311 | None:intergenic | 30.0% |
| CACAATCATGAAATTGTTAC+AGG | + | chr3_4:56658307-56658326 | Msa0508560:intron | 30.0% | |
| !! | AAAAGGTTCTAAGACAATGA+AGG | + | chr3_4:56658343-56658362 | Msa0508560:CDS | 30.0% |
| !! | AAAGGTTCTAAGACAATGAA+GGG | + | chr3_4:56658344-56658363 | Msa0508560:CDS | 30.0% |
| ! | AAGTATTTGTTGAGCAACTA+TGG | + | chr3_4:56658443-56658462 | Msa0508560:CDS | 30.0% |
| !! | TATTATGACTTTTAAGAGGG+AGG | + | chr3_4:56658721-56658740 | Msa0508560:CDS | 30.0% |
| TGATATTGTGTATTGTTGGT+AGG | + | chr3_4:56658886-56658905 | Msa0508560:intron | 30.0% | |
| !!! | TTAGGAGGTTGACTTTTTTA+TGG | + | chr3_4:56658936-56658955 | Msa0508560:intron | 30.0% |
| !!! | TATGGGGGAGTTATTTTTTT+GGG | + | chr3_4:56659115-56659134 | Msa0508560:intron | 30.0% |
| !!! | TTTGGGTGTTGACTTTTTTA+TGG | + | chr3_4:56659132-56659151 | Msa0508560:intron | 30.0% |
| !! | ATACGAGTTTTGTCAAATAG+TGG | + | chr3_4:56659425-56659444 | Msa0508560:intron | 30.0% |
| !! | TACGAGTTTTGTCAAATAGT+GGG | + | chr3_4:56659426-56659445 | Msa0508560:intron | 30.0% |
| AGTCTGAATATGTTCTGTAT+TGG | + | chr3_4:56659612-56659631 | Msa0508560:intron | 30.0% | |
| AATCTACCATTGCTTAAAAC+TGG | - | chr3_4:56659766-56659785 | None:intergenic | 30.0% | |
| TCTTCCTCTATTTGATCATA+GGG | + | chr3_4:56659862-56659881 | Msa0508560:intron | 30.0% | |
| GAACCAAGTTTCCATTTATT+TGG | + | chr3_4:56659886-56659905 | Msa0508560:CDS | 30.0% | |
| ! | GAATTTTGCTTTCTTCTGAA+GGG | + | chr3_4:56659965-56659984 | Msa0508560:CDS | 30.0% |
| ! | ATAATGGAAGAAAATGTGGT+CGG | + | chr3_4:56660149-56660168 | Msa0508560:CDS | 30.0% |
| AGCAGATACCAAATTATCTT+GGG | - | chr3_4:56660203-56660222 | None:intergenic | 30.0% | |
| TAGCAGATACCAAATTATCT+TGG | - | chr3_4:56660204-56660223 | None:intergenic | 30.0% | |
| ! | TTGGTATCTGCTATTTAACT+CGG | + | chr3_4:56660211-56660230 | Msa0508560:CDS | 30.0% |
| ATGTTTCGTGACCAAAAAAT+TGG | - | chr3_4:56660261-56660280 | None:intergenic | 30.0% | |
| AAATCTTAATCTCATTGGGT+GGG | - | chr3_4:56660437-56660456 | None:intergenic | 30.0% | |
| TAAATCTTAATCTCATTGGG+TGG | - | chr3_4:56660438-56660457 | None:intergenic | 30.0% | |
| ! | TGCAGTCATTTGTATGATTT+TGG | + | chr3_4:56660668-56660687 | Msa0508560:intron | 30.0% |
| ! | GGAGATCCCTTTATAATTTT+CGG | + | chr3_4:56660849-56660868 | Msa0508560:intron | 30.0% |
| TTGGGACCGAAAATTATAAA+GGG | - | chr3_4:56660858-56660877 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAAACAAG+AGG | - | chr3_4:56660950-56660969 | None:intergenic | 30.0% | |
| ACTGTACATACCAAACAAAA+AGG | - | chr3_4:56661081-56661100 | None:intergenic | 30.0% | |
| AATGTCACTAAACTTTCTAC+TGG | + | chr3_4:56661345-56661364 | Msa0508560:intron | 30.0% | |
| ATGACTCATTAACTATGATC+AGG | + | chr3_4:56661428-56661447 | Msa0508560:intron | 30.0% | |
| AAATGGGAGAGAAAGAAAAT+TGG | - | chr3_4:56661485-56661504 | None:intergenic | 30.0% | |
| ATAAATATAAGTAGATGGGC+TGG | + | chr3_4:56661772-56661791 | Msa0508560:intron | 30.0% | |
| ! | TAAATATAAGTAGATGGGCT+GGG | + | chr3_4:56661773-56661792 | Msa0508560:intron | 30.0% |
| ATAATCGGATCATCATTCTT+GGG | + | chr3_4:56662077-56662096 | Msa0508560:exon | 30.0% | |
| TTCTAAACAAATTCACCTCA+TGG | - | chr3_4:56662163-56662182 | None:intergenic | 30.0% | |
| ! | TATTGCAACTTTTGTACTGT+GGG | - | chr3_4:56662307-56662326 | None:intergenic | 30.0% |
| ! | TTATTGCAACTTTTGTACTG+TGG | - | chr3_4:56662308-56662327 | None:intergenic | 30.0% |
| TTTCTCTACTTAAGCATTTC+AGG | + | chr3_4:56662338-56662357 | Msa0508560:three_prime_UTR | 30.0% | |
| ! | TCTTTTTGTCGTATATTCTG+AGG | + | chr3_4:56662375-56662394 | Msa0508560:three_prime_UTR | 30.0% |
| TGAGGAAAGAGTTGTAAAAT+TGG | + | chr3_4:56662393-56662412 | Msa0508560:three_prime_UTR | 30.0% | |
| !!! | ATTTGGTTTTTTCAGGTAGG+AGG | + | chr3_4:56654256-56654275 | Msa0508560:intron | 35.0% |
| ! | AACTTGGTGAAATATCTGCA+AGG | + | chr3_4:56654283-56654302 | Msa0508560:CDS | 35.0% |
| CACTATCACCACATCTTAAT+TGG | + | chr3_4:56654319-56654338 | Msa0508560:CDS | 35.0% | |
| TCCTTCAGAAACATTCACTA+TGG | - | chr3_4:56654424-56654443 | None:intergenic | 35.0% | |
| ! | ATAGTGAATGTTTCTGAAGG+AGG | + | chr3_4:56654423-56654442 | Msa0508560:CDS | 35.0% |
| ! | TGTTTTCTTAACCAATGTCC+CGG | + | chr3_4:56654747-56654766 | Msa0508560:intron | 35.0% |
| CATGATCCTAAACCTTATGA+TGG | + | chr3_4:56654909-56654928 | Msa0508560:intron | 35.0% | |
| AAGCAACCATCATAAGGTTT+AGG | - | chr3_4:56654918-56654937 | None:intergenic | 35.0% | |
| GAAGAAAAGCAACCATCATA+AGG | - | chr3_4:56654924-56654943 | None:intergenic | 35.0% | |
| ! | AAGGTCAAAGGAGTACAATA+AGG | - | chr3_4:56655117-56655136 | None:intergenic | 35.0% |
| TATTGTACTCCTTTGACCTT+TGG | + | chr3_4:56655117-56655136 | Msa0508560:intron | 35.0% | |
| ATTGTACTCCTTTGACCTTT+GGG | + | chr3_4:56655118-56655137 | Msa0508560:intron | 35.0% | |
| ! | TTGGGATCAAAAGGAGTATA+AGG | - | chr3_4:56655189-56655208 | None:intergenic | 35.0% |
| !!! | GTACATGTATTTTGAAACGG+AGG | - | chr3_4:56655365-56655384 | None:intergenic | 35.0% |
| !! | AATGTTAACTTGTGTCCTTG+GGG | - | chr3_4:56655681-56655700 | None:intergenic | 35.0% |
| !! | ATTAGGATTGATTTGGAGCT+GGG | - | chr3_4:56655817-56655836 | None:intergenic | 35.0% |
| GGTAGACATTAGGATTGATT+TGG | - | chr3_4:56655824-56655843 | None:intergenic | 35.0% | |
| GCTAGGAATGGGAATATTTA+GGG | - | chr3_4:56655845-56655864 | None:intergenic | 35.0% | |
| AGCTAGGAATGGGAATATTT+AGG | - | chr3_4:56655846-56655865 | None:intergenic | 35.0% | |
| !! | TTGAGCGAATTTTTGTTTGG+TGG | + | chr3_4:56655896-56655915 | Msa0508560:intron | 35.0% |
| TGTTCTCCTGAAGTCAAAAT+AGG | + | chr3_4:56656350-56656369 | Msa0508560:intron | 35.0% | |
| ! | TGAAAAGTTTAGGTTCACAC+AGG | + | chr3_4:56656374-56656393 | Msa0508560:intron | 35.0% |
| AAAATAAACAAGTCACCGTC+CGG | + | chr3_4:56656512-56656531 | Msa0508560:intron | 35.0% | |
| ! | TCCAATTTTTGCACCTAAGT+TGG | + | chr3_4:56656604-56656623 | Msa0508560:intron | 35.0% |
| TCCAACTTAGGTGCAAAAAT+TGG | - | chr3_4:56656608-56656627 | None:intergenic | 35.0% | |
| ATAAATATTCCAAAGTCGCG+GGG | + | chr3_4:56656637-56656656 | Msa0508560:intron | 35.0% | |
| ATTCATCTCGTAAACTTCCT+AGG | + | chr3_4:56656680-56656699 | Msa0508560:intron | 35.0% | |
| GAGGAAGATTAGATAATCCT+AGG | - | chr3_4:56656700-56656719 | None:intergenic | 35.0% | |
| GTCACAAGAGTTCGATAATT+AGG | - | chr3_4:56656786-56656805 | None:intergenic | 35.0% | |
| !! | AGGCACTTGTTGTAATTGTA+TGG | - | chr3_4:56657132-56657151 | None:intergenic | 35.0% |
| ! | AGTGATGATAGAGGTTGATT+TGG | - | chr3_4:56657395-56657414 | None:intergenic | 35.0% |
| TTGGGGAAATTAAGGAATGA+GGG | - | chr3_4:56658177-56658196 | None:intergenic | 35.0% | |
| TTTGGGGAAATTAAGGAATG+AGG | - | chr3_4:56658178-56658197 | None:intergenic | 35.0% | |
| TTGAAAAGGGTCGAAGAAAA+CGG | - | chr3_4:56658260-56658279 | None:intergenic | 35.0% | |
| !! | ATGGATCTGAGCATTGAAAA+GGG | - | chr3_4:56658273-56658292 | None:intergenic | 35.0% |
| !! | AATGGATCTGAGCATTGAAA+AGG | - | chr3_4:56658274-56658293 | None:intergenic | 35.0% |
| ! | CAGGTTTCTGAAGATCAAAA+AGG | + | chr3_4:56658326-56658345 | Msa0508560:intron | 35.0% |
| TCAACACGTTTCTTCACAAT+AGG | + | chr3_4:56658371-56658390 | Msa0508560:CDS | 35.0% | |
| CAATAGAAGAACACCAATGT+TGG | - | chr3_4:56658420-56658439 | None:intergenic | 35.0% | |
| TGACACATGGTGAGAAAAAT+AGG | - | chr3_4:56658479-56658498 | None:intergenic | 35.0% | |
| TTAGCTATGTTGCTATAGCA+TGG | + | chr3_4:56658519-56658538 | Msa0508560:CDS | 35.0% | |
| TATGCAAACTATTCGATCCA+GGG | + | chr3_4:56658556-56658575 | Msa0508560:CDS | 35.0% | |
| GATCTTAAAGAATTGAACCC+TGG | - | chr3_4:56658576-56658595 | None:intergenic | 35.0% | |
| ! | TTCTGTGTTTCTGTTGTGTT+TGG | + | chr3_4:56658614-56658633 | Msa0508560:CDS | 35.0% |
| ! | TCTGTGTTTCTGTTGTGTTT+GGG | + | chr3_4:56658615-56658634 | Msa0508560:CDS | 35.0% |
| TCTTCCTGTATCGTTTAATC+AGG | + | chr3_4:56658655-56658674 | Msa0508560:CDS | 35.0% | |
| GCAAAAATGGCAGTGAAAAA+AGG | - | chr3_4:56658698-56658717 | None:intergenic | 35.0% | |
| ATAACAACACCAGTAACAAC+AGG | - | chr3_4:56658773-56658792 | None:intergenic | 35.0% | |
| ! | TTGTGTATTGTTGGTAGGAA+TGG | + | chr3_4:56658891-56658910 | Msa0508560:intron | 35.0% |
| TGGTAGGAATGGTATGTTAT+AGG | + | chr3_4:56658902-56658921 | Msa0508560:intron | 35.0% | |
| GGTAGGAATGGTATGTTATA+GGG | + | chr3_4:56658903-56658922 | Msa0508560:intron | 35.0% | |
| GTAGGAATGGTATGTTATAG+GGG | + | chr3_4:56658904-56658923 | Msa0508560:intron | 35.0% | |
| !!! | TAGGGGAGAATTTTTTTAGG+AGG | + | chr3_4:56658921-56658940 | Msa0508560:intron | 35.0% |
| !! | TTAGTGTATGCTTGGTTCTA+TGG | + | chr3_4:56658978-56658997 | Msa0508560:intron | 35.0% |
| TTGTGCATTGTTAATGGGAA+TGG | + | chr3_4:56659087-56659106 | Msa0508560:intron | 35.0% | |
| CATTGTTAATGGGAATGGTA+TGG | + | chr3_4:56659092-56659111 | Msa0508560:intron | 35.0% | |
| TTAATGGGAATGGTATGGTA+TGG | + | chr3_4:56659097-56659116 | Msa0508560:intron | 35.0% | |
| TAATGGGAATGGTATGGTAT+GGG | + | chr3_4:56659098-56659117 | Msa0508560:intron | 35.0% | |
| !!! | GTATGGGGGAGTTATTTTTT+TGG | + | chr3_4:56659114-56659133 | Msa0508560:intron | 35.0% |
| ! | GTTTGGGATGTGATTTCAAA+TGG | + | chr3_4:56659187-56659206 | Msa0508560:intron | 35.0% |
| ! | GTTGAGTCAACTTTGTCTTT+TGG | + | chr3_4:56659357-56659376 | Msa0508560:intron | 35.0% |
| TAAGAAGTAATATCATGCCC+TGG | - | chr3_4:56659662-56659681 | None:intergenic | 35.0% | |
| CATTGCTTAAAACTGGATAC+TGG | - | chr3_4:56659759-56659778 | None:intergenic | 35.0% | |
| !!! | CAGTATCCAGTTTTAAGCAA+TGG | + | chr3_4:56659757-56659776 | Msa0508560:intron | 35.0% |
| GTCTTCCTCTATTTGATCAT+AGG | + | chr3_4:56659861-56659880 | Msa0508560:intron | 35.0% | |
| TTCACCCTATGATCAAATAG+AGG | - | chr3_4:56659869-56659888 | None:intergenic | 35.0% | |
| !!! | TCCTTGTAGCACTGATTTTA+GGG | - | chr3_4:56659947-56659966 | None:intergenic | 35.0% |
| !!! | TTCCTTGTAGCACTGATTTT+AGG | - | chr3_4:56659948-56659967 | None:intergenic | 35.0% |
| ! | GGAATTTTGCTTTCTTCTGA+AGG | + | chr3_4:56659964-56659983 | Msa0508560:CDS | 35.0% |
| AATGAATCTCCTCCTTTACA+TGG | + | chr3_4:56660088-56660107 | Msa0508560:CDS | 35.0% | |
| TTCTTCCATTATAAGTGTGG+CGG | - | chr3_4:56660141-56660160 | None:intergenic | 35.0% | |
| !! | ATTGGTCAGGTTGACAAAAT+AGG | - | chr3_4:56660243-56660262 | None:intergenic | 35.0% |
| !!! | TGTCAACCTGACCAATTTTT+TGG | + | chr3_4:56660247-56660266 | Msa0508560:CDS | 35.0% |
| TCACAATATTAGCATGGTCT+TGG | + | chr3_4:56660604-56660623 | Msa0508560:intron | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | - | chr3_4:56660790-56660809 | None:intergenic | 35.0% |
| CTTGGGACCGAAAATTATAA+AGG | - | chr3_4:56660859-56660878 | None:intergenic | 35.0% | |
| ACTACTGTGTTCATATGCAT+TGG | - | chr3_4:56660994-56661013 | None:intergenic | 35.0% | |
| CTAATTTACGTTGAGTACCA+AGG | + | chr3_4:56661016-56661035 | Msa0508560:intron | 35.0% | |
| AACTATGATCAGGATTTGTG+TGG | + | chr3_4:56661438-56661457 | Msa0508560:intron | 35.0% | |
| CATGTTAATTAACCATCCCA+AGG | - | chr3_4:56661585-56661604 | None:intergenic | 35.0% | |
| !! | CAAGAATGTTAGGCTTTGTT+TGG | + | chr3_4:56661715-56661734 | Msa0508560:intron | 35.0% |
| !! | AAATATAAGTAGATGGGCTG+GGG | + | chr3_4:56661774-56661793 | Msa0508560:intron | 35.0% |
| AGTACAAAATAGTACACAGC+TGG | - | chr3_4:56661801-56661820 | None:intergenic | 35.0% | |
| !! | TTATCCCTTTGTTCGCTTTT+TGG | - | chr3_4:56662061-56662080 | None:intergenic | 35.0% |
| AAAGCGAACAAAGGGATAAT+CGG | + | chr3_4:56662062-56662081 | Msa0508560:exon | 35.0% | |
| GATAATCGGATCATCATTCT+TGG | + | chr3_4:56662076-56662095 | Msa0508560:exon | 35.0% | |
| TTCAATGAGGCTTTCTATGT+GGG | - | chr3_4:56662237-56662256 | None:intergenic | 35.0% | |
| ATTCAATGAGGCTTTCTATG+TGG | - | chr3_4:56662238-56662257 | None:intergenic | 35.0% | |
| ACATAGAAAGCCTCATTGAA+TGG | + | chr3_4:56662237-56662256 | Msa0508560:three_prime_UTR | 35.0% | |
| CATAGAAAGCCTCATTGAAT+GGG | + | chr3_4:56662238-56662257 | Msa0508560:three_prime_UTR | 35.0% | |
| !! | TGCTTGCTATAACTCAAAAG+AGG | - | chr3_4:56662265-56662284 | None:intergenic | 35.0% |
| TCGTGGATTTGCATCTTCAA+TGG | + | chr3_4:56654084-56654103 | Msa0508560:exon | 40.0% | |
| GAAGTAGTCAAAGAAACCCA+TGG | - | chr3_4:56654363-56654382 | None:intergenic | 40.0% | |
| ! | GCCATAGTGAATGTTTCTGA+AGG | + | chr3_4:56654420-56654439 | Msa0508560:CDS | 40.0% |
| TTGGCCACTTGAAAAGGTTT+GGG | + | chr3_4:56654473-56654492 | Msa0508560:intron | 40.0% | |
| !! | GATTCCCAAACCTTTTCAAG+TGG | - | chr3_4:56654480-56654499 | None:intergenic | 40.0% |
| ! | AGTTTTCGCGTCATGTTAAC+CGG | - | chr3_4:56654777-56654796 | None:intergenic | 40.0% |
| AAAGTTGTCCCAAAGGTCAA+AGG | - | chr3_4:56655129-56655148 | None:intergenic | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr3_4:56655263-56655282 | Msa0508560:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr3_4:56655264-56655283 | Msa0508560:intron | 40.0% |
| ! | GTGCATTGACATATGTGAAG+TGG | + | chr3_4:56655562-56655581 | Msa0508560:intron | 40.0% |
| !! | CATTAGGATTGATTTGGAGC+TGG | - | chr3_4:56655818-56655837 | None:intergenic | 40.0% |
| CCAACTACAATGAAGTAGGT+TGG | - | chr3_4:56656045-56656064 | None:intergenic | 40.0% | |
| CCAACCTACTTCATTGTAGT+TGG | + | chr3_4:56656042-56656061 | Msa0508560:intron | 40.0% | |
| TTTGAGGATGGTGTGAATGA+TGG | - | chr3_4:56658090-56658109 | None:intergenic | 40.0% | |
| GCATGGTATTCATCCAACAT+TGG | + | chr3_4:56658404-56658423 | Msa0508560:CDS | 40.0% | |
| ! | CTGGATCGAATAGTTTGCAT+AGG | - | chr3_4:56658557-56658576 | None:intergenic | 40.0% |
| CTATGCAAACTATTCGATCC+AGG | + | chr3_4:56658555-56658574 | Msa0508560:CDS | 40.0% | |
| ATCGCCTGATTAAACGATAC+AGG | - | chr3_4:56658662-56658681 | None:intergenic | 40.0% | |
| GTATCGTTTAATCAGGCGAT+TGG | + | chr3_4:56658662-56658681 | Msa0508560:CDS | 40.0% | |
| ACCAGTAACAACAGGAACAA+GGG | - | chr3_4:56658765-56658784 | None:intergenic | 40.0% | |
| !! | ACTGGTGTTGTTATTGCTAG+TGG | + | chr3_4:56658779-56658798 | Msa0508560:CDS | 40.0% |
| !! | CTGGTGTTGTTATTGCTAGT+GGG | + | chr3_4:56658780-56658799 | Msa0508560:CDS | 40.0% |
| !! | TGGTGTTGTTATTGCTAGTG+GGG | + | chr3_4:56658781-56658800 | Msa0508560:CDS | 40.0% |
| AATGGGAATGGTATGGTATG+GGG | + | chr3_4:56659099-56659118 | Msa0508560:intron | 40.0% | |
| ACTGTAGCATTGTAGTGTCA+AGG | + | chr3_4:56659531-56659550 | Msa0508560:intron | 40.0% | |
| ! | TTGCTTTCTTCTGAAGGGTA+AGG | + | chr3_4:56659970-56659989 | Msa0508560:intron | 40.0% |
| TCTTCCATTATAAGTGTGGC+GGG | - | chr3_4:56660140-56660159 | None:intergenic | 40.0% | |
| GAGACGATCCCAAGATAATT+TGG | + | chr3_4:56660192-56660211 | Msa0508560:CDS | 40.0% | |
| TCGTGACCAAAAAATTGGTC+AGG | - | chr3_4:56660256-56660275 | None:intergenic | 40.0% | |
| ACAGTTGAGACTTACCTGAA+GGG | - | chr3_4:56660297-56660316 | None:intergenic | 40.0% | |
| AACAGTTGAGACTTACCTGA+AGG | - | chr3_4:56660298-56660317 | None:intergenic | 40.0% | |
| CAACAGATGAGAGAACTTGT+TGG | - | chr3_4:56660520-56660539 | None:intergenic | 40.0% | |
| CAACAAGTTCTCTCATCTGT+TGG | + | chr3_4:56660518-56660537 | Msa0508560:intron | 40.0% | |
| !! | TTCTCTCATCTGTTGGTAGT+TGG | + | chr3_4:56660525-56660544 | Msa0508560:intron | 40.0% |
| !! | TCTCTCATCTGTTGGTAGTT+GGG | + | chr3_4:56660526-56660545 | Msa0508560:intron | 40.0% |
| ! | GTAGTTGGGACATCAGATTT+TGG | + | chr3_4:56660540-56660559 | Msa0508560:intron | 40.0% |
| ! | TTTTTACATTGGCCCAAGTC+GGG | - | chr3_4:56660789-56660808 | None:intergenic | 40.0% |
| TGGTTGAGTTCATAACTGAG+TGG | + | chr3_4:56661458-56661477 | Msa0508560:intron | 40.0% | |
| TTGCTGCATATGAATGACCT+TGG | + | chr3_4:56661565-56661584 | Msa0508560:intron | 40.0% | |
| TGCTGCATATGAATGACCTT+GGG | + | chr3_4:56661566-56661585 | Msa0508560:intron | 40.0% | |
| TTTCCCTCTGCAAGAATGTT+AGG | + | chr3_4:56661705-56661724 | Msa0508560:intron | 40.0% | |
| AAGCCTAACATTCTTGCAGA+GGG | - | chr3_4:56661711-56661730 | None:intergenic | 40.0% | |
| AAAGCCTAACATTCTTGCAG+AGG | - | chr3_4:56661712-56661731 | None:intergenic | 40.0% | |
| !! | TTGTTTGGCACTGGATGTTT+TGG | + | chr3_4:56661730-56661749 | Msa0508560:intron | 40.0% |
| TCATACCAGTGACTGAAACT+GGG | - | chr3_4:56661993-56662012 | None:intergenic | 40.0% | |
| ATCATACCAGTGACTGAAAC+TGG | - | chr3_4:56661994-56662013 | None:intergenic | 40.0% | |
| AGTTTCAGTCACTGGTATGA+TGG | + | chr3_4:56661993-56662012 | Msa0508560:CDS | 40.0% | |
| GTTTCAGTCACTGGTATGAT+GGG | + | chr3_4:56661994-56662013 | Msa0508560:CDS | 40.0% | |
| GAAGCCAAAAAGCGAACAAA+GGG | + | chr3_4:56662054-56662073 | Msa0508560:CDS | 40.0% | |
| AAATTCACCTCATGGAAGTG+AGG | - | chr3_4:56662155-56662174 | None:intergenic | 40.0% | |
| AGAGTCAAAGATTCAGAGTC+TGG | - | chr3_4:56662195-56662214 | None:intergenic | 40.0% | |
| TCAATGAGGCTTTCTATGTG+GGG | - | chr3_4:56662236-56662255 | None:intergenic | 40.0% | |
| AAAAGAGGACCCATTCAATG+AGG | - | chr3_4:56662250-56662269 | None:intergenic | 40.0% | |
| GAGATAGCTATGACAGTTGC+TGG | - | chr3_4:56654130-56654149 | None:intergenic | 45.0% | |
| GCAACTGTCATAGCTATCTC+TGG | + | chr3_4:56654130-56654149 | Msa0508560:CDS | 45.0% | |
| TCAGGTAGGAGGAAGAAACT+TGG | + | chr3_4:56654267-56654286 | Msa0508560:intron | 45.0% | |
| ATGAGATTGAGGGAGAGAGA+TGG | - | chr3_4:56654451-56654470 | None:intergenic | 45.0% | |
| ATCTCTCTCCCTCAATCTCA+TGG | + | chr3_4:56654450-56654469 | Msa0508560:CDS | 45.0% | |
| ! | TCATGGTTGGCCACTTGAAA+AGG | + | chr3_4:56654467-56654486 | Msa0508560:CDS | 45.0% |
| GTTGGCCACTTGAAAAGGTT+TGG | + | chr3_4:56654472-56654491 | Msa0508560:intron | 45.0% | |
| TGGGTCAAAAGTTGTCCCAA+AGG | - | chr3_4:56655136-56655155 | None:intergenic | 45.0% | |
| AATGTGGGATGTATGCTACC+AGG | - | chr3_4:56655225-56655244 | None:intergenic | 45.0% | |
| GTTTCTAAACTTGTGCCCCA+AGG | + | chr3_4:56655663-56655682 | Msa0508560:intron | 45.0% | |
| TTAGGTTAGGCACAACTCTC+CGG | - | chr3_4:56656534-56656553 | None:intergenic | 45.0% | |
| CTCTCTCTCTCAATAGATGC+TGG | + | chr3_4:56658026-56658045 | Msa0508560:intron | 45.0% | |
| GGTGGGTCGAAATCGAATTA+AGG | - | chr3_4:56658131-56658150 | None:intergenic | 45.0% | |
| ATCTGTGAATCCATGGCTTG+GGG | - | chr3_4:56658203-56658222 | None:intergenic | 45.0% | |
| GATCTGTGAATCCATGGCTT+GGG | - | chr3_4:56658204-56658223 | None:intergenic | 45.0% | |
| GACTTTAACGGAACAAGCCA+TGG | - | chr3_4:56658226-56658245 | None:intergenic | 45.0% | |
| ! | CAATAGGTCTTGTAGCAGCA+TGG | + | chr3_4:56658387-56658406 | Msa0508560:CDS | 45.0% |
| ACACGCAGTCATATGACACA+TGG | - | chr3_4:56658492-56658511 | None:intergenic | 45.0% | |
| !! | TGACTTTTAAGAGGGAGGCT+TGG | + | chr3_4:56658726-56658745 | Msa0508560:CDS | 45.0% |
| ACCCTTGTTCCTGTTGTTAC+TGG | + | chr3_4:56658761-56658780 | Msa0508560:CDS | 45.0% | |
| CACCAGTAACAACAGGAACA+AGG | - | chr3_4:56658766-56658785 | None:intergenic | 45.0% | |
| ATGGGAATGGTATGGTATGG+GGG | + | chr3_4:56659100-56659119 | Msa0508560:intron | 45.0% | |
| GCCCTAAAATCAGTGCTACA+AGG | + | chr3_4:56659943-56659962 | Msa0508560:CDS | 45.0% | |
| AGAAGGAAAACCACAGCCAT+TGG | - | chr3_4:56660116-56660135 | None:intergenic | 45.0% | |
| ! | TTATAAGTGTGGCGGGAAGA+AGG | - | chr3_4:56660133-56660152 | None:intergenic | 45.0% |
| TCTTCCCGCCACACTTATAA+TGG | + | chr3_4:56660133-56660152 | Msa0508560:CDS | 45.0% | |
| AAATGTGGTCGGAATCACGT+TGG | + | chr3_4:56660160-56660179 | Msa0508560:CDS | 45.0% | |
| ! | GTTGGGACATCAGATTTTGG+TGG | + | chr3_4:56660543-56660562 | Msa0508560:intron | 45.0% |
| AATTACGTTGCAGCGAACCT+TGG | - | chr3_4:56661036-56661055 | None:intergenic | 45.0% | |
| CGCTGCAACGTAATTCTAAG+AGG | + | chr3_4:56661041-56661060 | Msa0508560:intron | 45.0% | |
| GCATATGAATGACCTTGGGA+TGG | + | chr3_4:56661570-56661589 | Msa0508560:intron | 45.0% | |
| !! | TGTTAGGCTTTGTTTGGCAC+TGG | + | chr3_4:56661721-56661740 | Msa0508560:intron | 45.0% |
| ! | ATCCTAGAGCTGATTCCTAC+AGG | + | chr3_4:56661909-56661928 | Msa0508560:intron | 45.0% |
| TACCTGTAGGAATCAGCTCT+AGG | - | chr3_4:56661914-56661933 | None:intergenic | 45.0% | |
| ! | AGCTGATTCCTACAGGTACT+AGG | + | chr3_4:56661916-56661935 | Msa0508560:intron | 45.0% |
| ! | GCTGATTCCTACAGGTACTA+GGG | + | chr3_4:56661917-56661936 | Msa0508560:intron | 45.0% |
| TAGCATTCCCTAGTACCTGT+AGG | - | chr3_4:56661927-56661946 | None:intergenic | 45.0% | |
| CAGGTACTAGGGAATGCTAA+AGG | + | chr3_4:56661928-56661947 | Msa0508560:intron | 45.0% | |
| AGAAACCCAGTTTCAGTCAC+TGG | + | chr3_4:56661985-56662004 | Msa0508560:CDS | 45.0% | |
| !! | GTCACTGGTATGATGGGTTA+TGG | + | chr3_4:56662000-56662019 | Msa0508560:CDS | 45.0% |
| GGTTATGGACTCACAGTCTT+CGG | + | chr3_4:56662015-56662034 | Msa0508560:CDS | 45.0% | |
| CGAAGCCAAAAAGCGAACAA+AGG | + | chr3_4:56662053-56662072 | Msa0508560:CDS | 45.0% | |
| !!! | TTTTTTTAAAAAAAAACATA+AGG | + | chr3_4:56654588-56654607 | Msa0508560:intron | 5.0% |
| !! | AAAAAAATAAATAAATCAAA+TGG | + | chr3_4:56656986-56657005 | Msa0508560:intron | 5.0% |
| !! | AAAAAATAAATAAATCAAAT+GGG | + | chr3_4:56656987-56657006 | Msa0508560:intron | 5.0% |
| !!! | TAGTAAATTTTTTAAATAAT+AGG | - | chr3_4:56657152-56657171 | None:intergenic | 5.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | + | chr3_4:56660827-56660846 | Msa0508560:intron | 5.0% |
| !!! | TTTTATAATCAATTTTATTT+TGG | + | chr3_4:56661384-56661403 | Msa0508560:intron | 5.0% |
| CTCTCCCTCAATCTCATGGT+TGG | + | chr3_4:56654454-56654473 | Msa0508560:CDS | 50.0% | |
| GTGGCCAACCATGAGATTGA+GGG | - | chr3_4:56654461-56654480 | None:intergenic | 50.0% | |
| AGTGGCCAACCATGAGATTG+AGG | - | chr3_4:56654462-56654481 | None:intergenic | 50.0% | |
| GCACGGGTGCAAATACTAGT+TGG | - | chr3_4:56654623-56654642 | None:intergenic | 50.0% | |
| ATTTGCACCCGTGCAATGCA+CGG | + | chr3_4:56654629-56654648 | Msa0508560:intron | 50.0% | |
| TAACCAATGTCCCGGAACAC+CGG | + | chr3_4:56654755-56654774 | Msa0508560:intron | 50.0% | |
| GTCATGTTAACCGGTGTTCC+GGG | - | chr3_4:56654768-56654787 | None:intergenic | 50.0% | |
| CGTCATGTTAACCGGTGTTC+CGG | - | chr3_4:56654769-56654788 | None:intergenic | 50.0% | |
| CAGCGGTAGTTAACTACCGT+CGG | + | chr3_4:56654990-56655009 | Msa0508560:intron | 50.0% | |
| CAGCGGTAGTTAACTACCGT+TGG | + | chr3_4:56654990-56655009 | Msa0508560:intron | 50.0% | |
| !! | AGGATTGATTTGGAGCTGGG+TGG | - | chr3_4:56655814-56655833 | None:intergenic | 50.0% |
| TAATCATCACCCCGCGACTT+TGG | - | chr3_4:56656649-56656668 | None:intergenic | 50.0% | |
| AAGTCGCGGGGTGATGATTA+TGG | + | chr3_4:56656649-56656668 | Msa0508560:intron | 50.0% | |
| AGAAGAACGAGGTGAGTGGT+GGG | - | chr3_4:56658148-56658167 | None:intergenic | 50.0% | |
| AGACAGAAGAACGAGGTGAG+TGG | - | chr3_4:56658152-56658171 | None:intergenic | 50.0% | |
| TGGGGGGTTTGGGGAAATTA+AGG | - | chr3_4:56658185-56658204 | None:intergenic | 50.0% | |
| ! | TCTGTGAATCCATGGCTTGG+GGG | - | chr3_4:56658202-56658221 | None:intergenic | 50.0% |
| GGATCTGTGAATCCATGGCT+TGG | - | chr3_4:56658205-56658224 | None:intergenic | 50.0% | |
| GCCATGGATTCACAGATCCA+TGG | + | chr3_4:56658206-56658225 | Msa0508560:intron | 50.0% | |
| GCCATGGATCTGTGAATCCA+TGG | - | chr3_4:56658210-56658229 | None:intergenic | 50.0% | |
| CCATTGGAGCCATGTAAAGG+AGG | - | chr3_4:56660100-56660119 | None:intergenic | 50.0% | |
| CCTCCTTTACATGGCTCCAA+TGG | + | chr3_4:56660097-56660116 | Msa0508560:CDS | 50.0% | |
| CAGCCATTGGAGCCATGTAA+AGG | - | chr3_4:56660103-56660122 | None:intergenic | 50.0% | |
| TTACATGGCTCCAATGGCTG+TGG | + | chr3_4:56660103-56660122 | Msa0508560:CDS | 50.0% | |
| AAATTTGTCCGGTCCCGACT+TGG | + | chr3_4:56660773-56660792 | Msa0508560:intron | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | + | chr3_4:56660774-56660793 | Msa0508560:intron | 50.0% | |
| CAGACAACCTCACTTCCATG+AGG | + | chr3_4:56662145-56662164 | Msa0508560:three_prime_UTR | 50.0% | |
| TTTGCACCCGTGCAATGCAC+GGG | + | chr3_4:56654630-56654649 | Msa0508560:intron | 55.0% | |
| TAACCGGTGTTCCGGGACAT+TGG | - | chr3_4:56654761-56654780 | None:intergenic | 55.0% | |
| CGACGGTAGTTAACTACCGC+TGG | - | chr3_4:56654992-56655011 | None:intergenic | 55.0% | |
| GTTAGGCACAACTCTCCGGA+CGG | - | chr3_4:56656530-56656549 | None:intergenic | 55.0% | |
| CAGAAGAACGAGGTGAGTGG+TGG | - | chr3_4:56658149-56658168 | None:intergenic | 55.0% | |
| GAGGGAGAGACAGAAGAACG+AGG | - | chr3_4:56658159-56658178 | None:intergenic | 55.0% | |
| ! | ATCCATGGCTTGGGGGGTTT+GGG | - | chr3_4:56658195-56658214 | None:intergenic | 55.0% |
| ! | AATCCATGGCTTGGGGGGTT+TGG | - | chr3_4:56658196-56658215 | None:intergenic | 55.0% |
| ! | CTGTGAATCCATGGCTTGGG+GGG | - | chr3_4:56658201-56658220 | None:intergenic | 55.0% |
| TACCAGTGCTCTGACCCTTC+AGG | + | chr3_4:56660280-56660299 | Msa0508560:intron | 55.0% | |
| TACCTGAAGGGTCAGAGCAC+TGG | - | chr3_4:56660285-56660304 | None:intergenic | 55.0% | |
| TTGCACCCGTGCAATGCACG+GGG | + | chr3_4:56654631-56654650 | Msa0508560:intron | 60.0% | |
| TTCTCCCCCCGTGCATTGCA+CGG | - | chr3_4:56654640-56654659 | None:intergenic | 60.0% | |
| ! | TCCATGGCTTGGGGGGTTTG+GGG | - | chr3_4:56658194-56658213 | None:intergenic | 60.0% |
| ACATTGGCCCAAGTCGGGAC+CGG | - | chr3_4:56660784-56660803 | None:intergenic | 60.0% | |
| TGCACCCGTGCAATGCACGG+GGG | + | chr3_4:56654632-56654651 | Msa0508560:intron | 65.0% | |
| TCTCCCCCCGTGCATTGCAC+GGG | - | chr3_4:56654639-56654658 | None:intergenic | 65.0% | |
| TCCCCAAACCCCCCAAGCCA+TGG | + | chr3_4:56658190-56658209 | Msa0508560:intron | 65.0% | |
| GCACCCGTGCAATGCACGGG+GGG | + | chr3_4:56654633-56654652 | Msa0508560:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 56654070 | 56662487 | 56654070 | ID=Msa0508560;Name=Msa0508560 |
| chr3_4 | mRNA | 56654070 | 56662487 | 56654070 | ID=Msa0508560-mRNA-1;Parent=Msa0508560;Name=Msa0508560-mRNA-1;_AED=0.11;_eAED=0.11;_QI=33|0.66|0.57|1|0.66|0.42|7|407|391 |
| chr3_4 | exon | 56654070 | 56654151 | 56654070 | ID=Msa0508560-mRNA-1:exon:12782;Parent=Msa0508560-mRNA-1 |
| chr3_4 | exon | 56654271 | 56654488 | 56654271 | ID=Msa0508560-mRNA-1:exon:12783;Parent=Msa0508560-mRNA-1 |
| chr3_4 | exon | 56658329 | 56658577 | 56658329 | ID=Msa0508560-mRNA-1:exon:12784;Parent=Msa0508560-mRNA-1 |
| chr3_4 | exon | 56658593 | 56658802 | 56658593 | ID=Msa0508560-mRNA-1:exon:12785;Parent=Msa0508560-mRNA-1 |
| chr3_4 | exon | 56659883 | 56659986 | 56659883 | ID=Msa0508560-mRNA-1:exon:12786;Parent=Msa0508560-mRNA-1 |
| chr3_4 | exon | 56660073 | 56660268 | 56660073 | ID=Msa0508560-mRNA-1:exon:12787;Parent=Msa0508560-mRNA-1 |
| chr3_4 | exon | 56661931 | 56662487 | 56661931 | ID=Msa0508560-mRNA-1:exon:12788;Parent=Msa0508560-mRNA-1 |
| chr3_4 | five_prime_UTR | 56654070 | 56654102 | 56654070 | ID=Msa0508560-mRNA-1:five_prime_utr;Parent=Msa0508560-mRNA-1 |
| chr3_4 | CDS | 56654103 | 56654151 | 56654103 | ID=Msa0508560-mRNA-1:cds;Parent=Msa0508560-mRNA-1 |
| chr3_4 | CDS | 56654271 | 56654488 | 56654271 | ID=Msa0508560-mRNA-1:cds;Parent=Msa0508560-mRNA-1 |
| chr3_4 | CDS | 56658329 | 56658577 | 56658329 | ID=Msa0508560-mRNA-1:cds;Parent=Msa0508560-mRNA-1 |
| chr3_4 | CDS | 56658593 | 56658802 | 56658593 | ID=Msa0508560-mRNA-1:cds;Parent=Msa0508560-mRNA-1 |
| chr3_4 | CDS | 56659883 | 56659986 | 56659883 | ID=Msa0508560-mRNA-1:cds;Parent=Msa0508560-mRNA-1 |
| chr3_4 | CDS | 56660073 | 56660268 | 56660073 | ID=Msa0508560-mRNA-1:cds;Parent=Msa0508560-mRNA-1 |
| chr3_4 | CDS | 56661931 | 56662080 | 56661931 | ID=Msa0508560-mRNA-1:cds;Parent=Msa0508560-mRNA-1 |
| chr3_4 | three_prime_UTR | 56662081 | 56662487 | 56662081 | ID=Msa0508560-mRNA-1:three_prime_utr;Parent=Msa0508560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
