Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363990 | KAF8702598.1 | 63.684 | 190 | 40 | 3 | 26 | 186 | 48 | 237 | 2.00e-68 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363990 | sp|P0CG89|H4_SOYBN | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.73e-67 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363990 | A0A453MZN2 | 79.851 | 134 | 27 | 0 | 53 | 186 | 30 | 163 | 2.77e-68 | 214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0363990 | Msa0460780 | 0.817321 | 3.503685e-52 | -8.615850e-47 |
| Msa0363990 | Msa0507020 | 0.831725 | 1.418500e-55 | -8.615850e-47 |
| Msa0363990 | Msa1421570 | 0.801825 | 7.498355e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363990 | MtrunA17_Chr5g0425951 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr4g0030431 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr3g0100121 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr3g0113681 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr2g0327641 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr3g0103351 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr8g0352791 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr3g0103821 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr3g0104031 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr7g0225731 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr3g0103801 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr3g0103881 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr7g0262791 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.01e-68 | 203 |
| Msa0363990 | MtrunA17_Chr4g0072411 | 78.832 | 137 | 29 | 0 | 50 | 186 | 25 | 161 | 1.77e-56 | 175 |
| Msa0363990 | MtrunA17_Chr3g0097361 | 49.333 | 75 | 23 | 2 | 1 | 71 | 94 | 157 | 2.12e-12 | 64.7 |
| Msa0363990 | MtrunA17_Chr3g0097411 | 75.000 | 40 | 10 | 0 | 1 | 40 | 113 | 152 | 8.70e-12 | 63.2 |
| Msa0363990 | MtrunA17_Chr3g0097331 | 47.887 | 71 | 33 | 2 | 2 | 72 | 1 | 67 | 1.47e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363990 | AT3G53730.1 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.78e-68 | 203 |
| Msa0363990 | AT1G07820.2 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.78e-68 | 203 |
| Msa0363990 | AT1G07820.1 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.78e-68 | 203 |
| Msa0363990 | AT5G59690.1 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.78e-68 | 203 |
| Msa0363990 | AT3G46320.1 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.78e-68 | 203 |
| Msa0363990 | AT2G28740.1 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.78e-68 | 203 |
| Msa0363990 | AT1G07660.1 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.78e-68 | 203 |
| Msa0363990 | AT3G45930.1 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.78e-68 | 203 |
| Msa0363990 | AT5G59970.1 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.78e-68 | 203 |
| Msa0363990 | AT5G59970.2 | 100.000 | 103 | 0 | 0 | 84 | 186 | 1 | 103 | 2.78e-68 | 203 |
| Msa0363990 | AT1G07660.2 | 83.495 | 103 | 0 | 1 | 84 | 186 | 1 | 86 | 4.61e-51 | 159 |
Find 44 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTAGAACTTGAGTTTCT+TGG | 0.237998 | 3_1:-56674821 | Msa0363990:CDS |
| AAACAATTGGTGATATGTTT+TGG | 0.242456 | 3_1:+56674626 | None:intergenic |
| AACCAAGAAACTCAAGTTCT+AGG | 0.334678 | 3_1:+56674819 | None:intergenic |
| GGAAGAACCCTCTATGGATT+TGG | 0.370047 | 3_1:-56673001 | Msa0363990:CDS |
| AGACAAGGAAGAACCCTCTA+TGG | 0.396310 | 3_1:-56673007 | Msa0363990:CDS |
| AGGTGTCTTGAAGATCTTCT+TGG | 0.396647 | 3_1:-56673116 | Msa0363990:CDS |
| ATGTGTGATGTTGGGTTGAA+TGG | 0.424022 | 3_1:+56674751 | None:intergenic |
| GGGAGGTAAGGGACTTGGAA+AGG | 0.449159 | 3_1:-56673266 | Msa0363990:CDS |
| TTTAGATGAATGTGTGATGT+TGG | 0.451016 | 3_1:+56674742 | None:intergenic |
| CTCGCCAATCGGCGAATAGC+AGG | 0.453484 | 3_1:+56673187 | None:intergenic |
| GGAGGTAAGGGACTTGGAAA+GGG | 0.467307 | 3_1:-56673265 | Msa0363990:CDS |
| GGAAAGGGAGGTAAGGGACT+TGG | 0.470633 | 3_1:-56673271 | Msa0363990:CDS |
| TTCAACCTCCAAATCCATAG+AGG | 0.476286 | 3_1:+56672993 | None:intergenic |
| CGTTAGGTGTGATATGTCTC+TGG | 0.480973 | 3_1:+56674699 | None:intergenic |
| TATTATGACTTGTGCAAGAA+TGG | 0.483748 | 3_1:-56674797 | Msa0363990:CDS |
| AGGTCGTGGAAAGGGAGGTA+AGG | 0.492819 | 3_1:-56673278 | Msa0363990:CDS |
| CACCACCTCTTCTCGCCAAT+CGG | 0.499978 | 3_1:+56673176 | None:intergenic |
| CAAGCCTGCTATTCGCCGAT+TGG | 0.502152 | 3_1:-56673191 | Msa0363990:CDS |
| AGAACCCTCTATGGATTTGG+AGG | 0.508817 | 3_1:-56672998 | Msa0363990:CDS |
| CAATCGGCGAATAGCAGGCT+TGG | 0.515998 | 3_1:+56673192 | None:intergenic |
| CTCGCGAAAATGTCAGGTCG+TGG | 0.519770 | 3_1:-56673292 | Msa0363990:CDS |
| TTACATACACTGAGCATGCT+AGG | 0.520723 | 3_1:-56673072 | Msa0363990:CDS |
| GGTTCTTCGTGATAACATCC+AGG | 0.522451 | 3_1:-56673221 | Msa0363990:CDS |
| TTAGATGAATGTGTGATGTT+GGG | 0.525764 | 3_1:+56674743 | None:intergenic |
| CGCCGATTGGCGAGAAGAGG+TGG | 0.530277 | 3_1:-56673178 | Msa0363990:CDS |
| AGGTGCAAAGAGGCATAGAA+AGG | 0.530485 | 3_1:-56673242 | Msa0363990:CDS |
| AAAATGTCAGGTCGTGGAAA+GGG | 0.539338 | 3_1:-56673286 | Msa0363990:CDS |
| GAAAATGTCAGGTCGTGGAA+AGG | 0.540836 | 3_1:-56673287 | Msa0363990:CDS |
| GTGATGTTGGGTTGAATGGA+TGG | 0.541590 | 3_1:+56674755 | None:intergenic |
| GAGGAAGACGGTGACAGCCA+TGG | 0.546349 | 3_1:-56673050 | Msa0363990:CDS |
| GGTGGTGTTAAGAGAATCAG+TGG | 0.556350 | 3_1:-56673160 | Msa0363990:CDS |
| GGTAAGGGACTTGGAAAGGG+AGG | 0.560743 | 3_1:-56673262 | Msa0363990:CDS |
| GGTCGTGGAAAGGGAGGTAA+GGG | 0.564245 | 3_1:-56673277 | Msa0363990:CDS |
| GTCTATGCTTTGAAGAGACA+AGG | 0.570048 | 3_1:-56673022 | Msa0363990:CDS |
| TAGCAGGCTTGGTGATACCC+TGG | 0.594313 | 3_1:+56673203 | None:intergenic |
| ATTCGCCGATTGGCGAGAAG+AGG | 0.615284 | 3_1:-56673181 | Msa0363990:CDS |
| TTGATATATGAAGAAACAAG+AGG | 0.619131 | 3_1:-56673136 | Msa0363990:CDS |
| CAAAGCATAGACAACATCCA+TGG | 0.629842 | 3_1:+56673033 | None:intergenic |
| GTTCTTCGTGATAACATCCA+GGG | 0.632029 | 3_1:-56673220 | Msa0363990:CDS |
| TCAACCTCCAAATCCATAGA+GGG | 0.633476 | 3_1:+56672994 | None:intergenic |
| ATGTCAGGTCGTGGAAAGGG+AGG | 0.643397 | 3_1:-56673283 | Msa0363990:CDS |
| TGAGCATGCTAGGAGGAAGA+CGG | 0.671956 | 3_1:-56673062 | Msa0363990:CDS |
| TTGGAAAGGGAGGTGCAAAG+AGG | 0.683014 | 3_1:-56673252 | Msa0363990:CDS |
| CATACACTGAGCATGCTAGG+AGG | 0.707859 | 3_1:-56673069 | Msa0363990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAAGATAATAATTTTTC+GGG | - | chr3_1:56673647-56673666 | Msa0363990:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr3_1:56673695-56673714 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr3_1:56673696-56673715 | None:intergenic | 10.0% |
| !! | TCTAAATTAATAAATTTATC+TGG | - | chr3_1:56673983-56674002 | Msa0363990:intron | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | - | chr3_1:56673647-56673666 | Msa0363990:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr3_1:56673695-56673714 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr3_1:56673696-56673715 | None:intergenic | 10.0% |
| !! | TCTAAATTAATAAATTTATC+TGG | - | chr3_1:56673983-56674002 | Msa0363990:intron | 10.0% |
| !! | AATTATTATGATCAAACAAT+TGG | + | chr3_1:56673223-56673242 | None:intergenic | 15.0% |
| !!! | AAACTCTTTAATTTAATACT+CGG | - | chr3_1:56673543-56673562 | Msa0363990:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | - | chr3_1:56673581-56673600 | Msa0363990:intron | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr3_1:56673619-56673638 | None:intergenic | 15.0% |
| !! | AATTATTATGATCAAACAAT+TGG | + | chr3_1:56673223-56673242 | None:intergenic | 15.0% |
| !!! | AAACTCTTTAATTTAATACT+CGG | - | chr3_1:56673543-56673562 | Msa0363990:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | - | chr3_1:56673581-56673600 | Msa0363990:intron | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr3_1:56673619-56673638 | None:intergenic | 15.0% |
| !!! | AATTTTGACAATTTAACGTT+AGG | + | chr3_1:56673153-56673172 | None:intergenic | 20.0% |
| !!! | AAATTGTCAAAATTTCAAGT+TGG | - | chr3_1:56673159-56673178 | Msa0363990:CDS | 20.0% |
| !!! | TTGGATCATAATAATTTTAC+AGG | - | chr3_1:56673178-56673197 | Msa0363990:CDS | 20.0% |
| !! | AATCCTAAAAGCAATTATAA+TGG | - | chr3_1:56673416-56673435 | Msa0363990:intron | 20.0% |
| !! | TTTCAAAAATTTGTCATGTT+AGG | + | chr3_1:56673493-56673512 | None:intergenic | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr3_1:56674010-56674029 | None:intergenic | 20.0% |
| !! | TCTTCATATTGTTGAATTAA+TGG | - | chr3_1:56674117-56674136 | Msa0363990:intron | 20.0% |
| !! | AGAAAACAGTAAACAAATAA+AGG | - | chr3_1:56674163-56674182 | Msa0363990:intron | 20.0% |
| !! | GAAAACAGTAAACAAATAAA+GGG | - | chr3_1:56674164-56674183 | Msa0363990:intron | 20.0% |
| !! | AAAACAGTAAACAAATAAAG+GGG | - | chr3_1:56674165-56674184 | Msa0363990:intron | 20.0% |
| !!! | GTTATTTTTTGTGTTTTTAG+TGG | + | chr3_1:56674219-56674238 | None:intergenic | 20.0% |
| !! | AGAAAAAGAAACAGAAAATT+GGG | + | chr3_1:56674513-56674532 | None:intergenic | 20.0% |
| !!! | AATTTTGACAATTTAACGTT+AGG | + | chr3_1:56673153-56673172 | None:intergenic | 20.0% |
| !!! | AAATTGTCAAAATTTCAAGT+TGG | - | chr3_1:56673159-56673178 | Msa0363990:CDS | 20.0% |
| !!! | TTGGATCATAATAATTTTAC+AGG | - | chr3_1:56673178-56673197 | Msa0363990:CDS | 20.0% |
| !! | AATCCTAAAAGCAATTATAA+TGG | - | chr3_1:56673416-56673435 | Msa0363990:intron | 20.0% |
| !! | TTTCAAAAATTTGTCATGTT+AGG | + | chr3_1:56673493-56673512 | None:intergenic | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr3_1:56674010-56674029 | None:intergenic | 20.0% |
| !! | TCTTCATATTGTTGAATTAA+TGG | - | chr3_1:56674117-56674136 | Msa0363990:intron | 20.0% |
| !! | AGAAAACAGTAAACAAATAA+AGG | - | chr3_1:56674163-56674182 | Msa0363990:intron | 20.0% |
| !! | GAAAACAGTAAACAAATAAA+GGG | - | chr3_1:56674164-56674183 | Msa0363990:intron | 20.0% |
| !! | AAAACAGTAAACAAATAAAG+GGG | - | chr3_1:56674165-56674184 | Msa0363990:intron | 20.0% |
| !!! | GTTATTTTTTGTGTTTTTAG+TGG | + | chr3_1:56674219-56674238 | None:intergenic | 20.0% |
| !! | AGAAAAAGAAACAGAAAATT+GGG | + | chr3_1:56674513-56674532 | None:intergenic | 20.0% |
| !! | GATCATAATAATTTTACAGG+AGG | - | chr3_1:56673181-56673200 | Msa0363990:CDS | 25.0% |
| !!! | AAACAATTGGTGATATGTTT+TGG | + | chr3_1:56673210-56673229 | None:intergenic | 25.0% |
| ! | TACAAATTGTTCTTAGGATT+GGG | + | chr3_1:56673299-56673318 | None:intergenic | 25.0% |
| ! | TTACAAATTGTTCTTAGGAT+TGG | + | chr3_1:56673300-56673319 | None:intergenic | 25.0% |
| !!! | TTACAAATCGTTTTTAGGAT+TGG | + | chr3_1:56673326-56673345 | None:intergenic | 25.0% |
| !!! | ACAATATGTTTGTTGTTGAA+CGG | + | chr3_1:56673351-56673370 | None:intergenic | 25.0% |
| !!! | TCTCCATTATAATTGCTTTT+AGG | + | chr3_1:56673422-56673441 | None:intergenic | 25.0% |
| !!! | ATAATGGAGAAACTCATTTT+TGG | - | chr3_1:56673432-56673451 | Msa0363990:intron | 25.0% |
| ! | ACTGTACATATCAAACAAAA+AGG | + | chr3_1:56673903-56673922 | None:intergenic | 25.0% |
| ! | ACAAGTGAACAAAACAAAAT+CGG | - | chr3_1:56674260-56674279 | Msa0363990:intron | 25.0% |
| !!! | CAAATGAGTTTTTCAACTTT+TGG | + | chr3_1:56674385-56674404 | None:intergenic | 25.0% |
| ! | AAAAATGAAGAATGAGATTG+GGG | + | chr3_1:56674450-56674469 | None:intergenic | 25.0% |
| ! | GAAAAATGAAGAATGAGATT+GGG | + | chr3_1:56674451-56674470 | None:intergenic | 25.0% |
| ! | TGAAAAATGAAGAATGAGAT+TGG | + | chr3_1:56674452-56674471 | None:intergenic | 25.0% |
| ! | GAAAAAGAAACAGAAAATTG+GGG | + | chr3_1:56674512-56674531 | None:intergenic | 25.0% |
| ! | GAGAAAAAGAAACAGAAAAT+TGG | + | chr3_1:56674514-56674533 | None:intergenic | 25.0% |
| ! | TTGATATATGAAGAAACAAG+AGG | - | chr3_1:56674697-56674716 | Msa0363990:CDS | 25.0% |
| !! | GATCATAATAATTTTACAGG+AGG | - | chr3_1:56673181-56673200 | Msa0363990:CDS | 25.0% |
| !!! | AAACAATTGGTGATATGTTT+TGG | + | chr3_1:56673210-56673229 | None:intergenic | 25.0% |
| ! | TACAAATTGTTCTTAGGATT+GGG | + | chr3_1:56673299-56673318 | None:intergenic | 25.0% |
| ! | TTACAAATTGTTCTTAGGAT+TGG | + | chr3_1:56673300-56673319 | None:intergenic | 25.0% |
| !!! | TTACAAATCGTTTTTAGGAT+TGG | + | chr3_1:56673326-56673345 | None:intergenic | 25.0% |
| !!! | ACAATATGTTTGTTGTTGAA+CGG | + | chr3_1:56673351-56673370 | None:intergenic | 25.0% |
| !!! | TCTCCATTATAATTGCTTTT+AGG | + | chr3_1:56673422-56673441 | None:intergenic | 25.0% |
| !!! | ATAATGGAGAAACTCATTTT+TGG | - | chr3_1:56673432-56673451 | Msa0363990:intron | 25.0% |
| ! | ACTGTACATATCAAACAAAA+AGG | + | chr3_1:56673903-56673922 | None:intergenic | 25.0% |
| ! | ACAAGTGAACAAAACAAAAT+CGG | - | chr3_1:56674260-56674279 | Msa0363990:intron | 25.0% |
| !!! | CAAATGAGTTTTTCAACTTT+TGG | + | chr3_1:56674385-56674404 | None:intergenic | 25.0% |
| ! | AAAAATGAAGAATGAGATTG+GGG | + | chr3_1:56674450-56674469 | None:intergenic | 25.0% |
| ! | GAAAAATGAAGAATGAGATT+GGG | + | chr3_1:56674451-56674470 | None:intergenic | 25.0% |
| ! | TGAAAAATGAAGAATGAGAT+TGG | + | chr3_1:56674452-56674471 | None:intergenic | 25.0% |
| ! | GAAAAAGAAACAGAAAATTG+GGG | + | chr3_1:56674512-56674531 | None:intergenic | 25.0% |
| ! | GAGAAAAAGAAACAGAAAAT+TGG | + | chr3_1:56674514-56674533 | None:intergenic | 25.0% |
| ! | TTGATATATGAAGAAACAAG+AGG | - | chr3_1:56674697-56674716 | Msa0363990:CDS | 25.0% |
| ! | TATTATGACTTGTGCAAGAA+TGG | - | chr3_1:56673036-56673055 | Msa0363990:CDS | 30.0% |
| TTAGATGAATGTGTGATGTT+GGG | + | chr3_1:56673093-56673112 | None:intergenic | 30.0% | |
| TTTAGATGAATGTGTGATGT+TGG | + | chr3_1:56673094-56673113 | None:intergenic | 30.0% | |
| GGAAGTTACAAATTGTTCTT+AGG | + | chr3_1:56673305-56673324 | None:intergenic | 30.0% | |
| !! | AATATGTTTGTTGTTGAACG+GGG | + | chr3_1:56673349-56673368 | None:intergenic | 30.0% |
| !! | CAATATGTTTGTTGTTGAAC+GGG | + | chr3_1:56673350-56673369 | None:intergenic | 30.0% |
| ATTTGTCATGTTAGGTTTGA+GGG | + | chr3_1:56673485-56673504 | None:intergenic | 30.0% | |
| AATTTGTCATGTTAGGTTTG+AGG | + | chr3_1:56673486-56673505 | None:intergenic | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | - | chr3_1:56673668-56673687 | Msa0363990:intron | 30.0% |
| TTGGGACCGAAAATTATAAA+GGG | + | chr3_1:56673677-56673696 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAAACAAG+AGG | + | chr3_1:56673771-56673790 | None:intergenic | 30.0% | |
| CAGAAATGAAAACTGTTCTT+TGG | + | chr3_1:56674096-56674115 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCTAAATCAACCA+AGG | + | chr3_1:56674153-56674172 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTGTTCACTTGTG+CGG | + | chr3_1:56674259-56674278 | None:intergenic | 30.0% |
| !! | GTCGATAAGCAATATTTTGA+CGG | + | chr3_1:56674287-56674306 | None:intergenic | 30.0% |
| GTTGGATTTGAATTTATCGA+CGG | + | chr3_1:56674354-56674373 | None:intergenic | 30.0% | |
| ATGAGATTGGGGTATATATA+TGG | + | chr3_1:56674439-56674458 | None:intergenic | 30.0% | |
| ! | TATTATGACTTGTGCAAGAA+TGG | - | chr3_1:56673036-56673055 | Msa0363990:CDS | 30.0% |
| TTAGATGAATGTGTGATGTT+GGG | + | chr3_1:56673093-56673112 | None:intergenic | 30.0% | |
| TTTAGATGAATGTGTGATGT+TGG | + | chr3_1:56673094-56673113 | None:intergenic | 30.0% | |
| GGAAGTTACAAATTGTTCTT+AGG | + | chr3_1:56673305-56673324 | None:intergenic | 30.0% | |
| !! | AATATGTTTGTTGTTGAACG+GGG | + | chr3_1:56673349-56673368 | None:intergenic | 30.0% |
| !! | CAATATGTTTGTTGTTGAAC+GGG | + | chr3_1:56673350-56673369 | None:intergenic | 30.0% |
| ATTTGTCATGTTAGGTTTGA+GGG | + | chr3_1:56673485-56673504 | None:intergenic | 30.0% | |
| AATTTGTCATGTTAGGTTTG+AGG | + | chr3_1:56673486-56673505 | None:intergenic | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | - | chr3_1:56673668-56673687 | Msa0363990:intron | 30.0% |
| TTGGGACCGAAAATTATAAA+GGG | + | chr3_1:56673677-56673696 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAAACAAG+AGG | + | chr3_1:56673771-56673790 | None:intergenic | 30.0% | |
| CAGAAATGAAAACTGTTCTT+TGG | + | chr3_1:56674096-56674115 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCTAAATCAACCA+AGG | + | chr3_1:56674153-56674172 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTGTTCACTTGTG+CGG | + | chr3_1:56674259-56674278 | None:intergenic | 30.0% |
| !! | GTCGATAAGCAATATTTTGA+CGG | + | chr3_1:56674287-56674306 | None:intergenic | 30.0% |
| GTTGGATTTGAATTTATCGA+CGG | + | chr3_1:56674354-56674373 | None:intergenic | 30.0% | |
| ATGAGATTGGGGTATATATA+TGG | + | chr3_1:56674439-56674458 | None:intergenic | 30.0% | |
| ATCCTAGAACTTGAGTTTCT+TGG | - | chr3_1:56673012-56673031 | Msa0363990:CDS | 35.0% | |
| AACCAAGAAACTCAAGTTCT+AGG | + | chr3_1:56673017-56673036 | None:intergenic | 35.0% | |
| ! | TTTTTACATTGGCCCAAGTT+GGG | + | chr3_1:56673608-56673627 | None:intergenic | 35.0% |
| !!! | TTTTTTACATTGGCCCAAGT+TGG | + | chr3_1:56673609-56673628 | None:intergenic | 35.0% |
| CTTGGGACCGAAAATTATAA+AGG | + | chr3_1:56673678-56673697 | None:intergenic | 35.0% | |
| ACTACTGTGTTCATATGCAT+TGG | + | chr3_1:56673815-56673834 | None:intergenic | 35.0% | |
| CTAATTTACGTTGAATCCCA+AGG | - | chr3_1:56673837-56673856 | Msa0363990:intron | 35.0% | |
| TTAATGGTACCTACTTTCCT+TGG | - | chr3_1:56674133-56674152 | Msa0363990:intron | 35.0% | |
| CTAAATCAACCAAGGAAAGT+AGG | + | chr3_1:56674145-56674164 | None:intergenic | 35.0% | |
| ! | AGTGGATGTTGTGTTTTCTT+TGG | + | chr3_1:56674201-56674220 | None:intergenic | 35.0% |
| AACAGAAAATTGGGGATCTA+GGG | + | chr3_1:56674504-56674523 | None:intergenic | 35.0% | |
| AAACAGAAAATTGGGGATCT+AGG | + | chr3_1:56674505-56674524 | None:intergenic | 35.0% | |
| ! | AATTTTCTCGCGAAAATGTC+AGG | - | chr3_1:56674535-56674554 | Msa0363990:intron | 35.0% |
| ATCCTAGAACTTGAGTTTCT+TGG | - | chr3_1:56673012-56673031 | Msa0363990:CDS | 35.0% | |
| AACCAAGAAACTCAAGTTCT+AGG | + | chr3_1:56673017-56673036 | None:intergenic | 35.0% | |
| ! | TTTTTACATTGGCCCAAGTT+GGG | + | chr3_1:56673608-56673627 | None:intergenic | 35.0% |
| !!! | TTTTTTACATTGGCCCAAGT+TGG | + | chr3_1:56673609-56673628 | None:intergenic | 35.0% |
| CTTGGGACCGAAAATTATAA+AGG | + | chr3_1:56673678-56673697 | None:intergenic | 35.0% | |
| ACTACTGTGTTCATATGCAT+TGG | + | chr3_1:56673815-56673834 | None:intergenic | 35.0% | |
| CTAATTTACGTTGAATCCCA+AGG | - | chr3_1:56673837-56673856 | Msa0363990:intron | 35.0% | |
| TTAATGGTACCTACTTTCCT+TGG | - | chr3_1:56674133-56674152 | Msa0363990:intron | 35.0% | |
| CTAAATCAACCAAGGAAAGT+AGG | + | chr3_1:56674145-56674164 | None:intergenic | 35.0% | |
| ! | AGTGGATGTTGTGTTTTCTT+TGG | + | chr3_1:56674201-56674220 | None:intergenic | 35.0% |
| AACAGAAAATTGGGGATCTA+GGG | + | chr3_1:56674504-56674523 | None:intergenic | 35.0% | |
| AAACAGAAAATTGGGGATCT+AGG | + | chr3_1:56674505-56674524 | None:intergenic | 35.0% | |
| ! | AATTTTCTCGCGAAAATGTC+AGG | - | chr3_1:56674535-56674554 | Msa0363990:intron | 35.0% |
| !! | ATGTGTGATGTTGGGTTGAA+TGG | + | chr3_1:56673085-56673104 | None:intergenic | 40.0% |
| !! | CGGGGTTACAAATCGTTTTT+AGG | + | chr3_1:56673331-56673350 | None:intergenic | 40.0% |
| TTACGTTTGCAACGAACCTT+GGG | + | chr3_1:56673856-56673875 | None:intergenic | 40.0% | |
| ATTACGTTTGCAACGAACCT+TGG | + | chr3_1:56673857-56673876 | None:intergenic | 40.0% | |
| ATTCATTTGCGCAATACGCA+CGG | - | chr3_1:56674314-56674333 | Msa0363990:intron | 40.0% | |
| !!! | CAACTTTTGGTTTCAGTCGT+TGG | + | chr3_1:56674372-56674391 | None:intergenic | 40.0% |
| TATGGTATCACAGATCAGAG+CGG | + | chr3_1:56674421-56674440 | None:intergenic | 40.0% | |
| AAAATGTCAGGTCGTGGAAA+GGG | - | chr3_1:56674547-56674566 | Msa0363990:intron | 40.0% | |
| GTTCTTCGTGATAACATCCA+GGG | - | chr3_1:56674613-56674632 | Msa0363990:intron | 40.0% | |
| AGGTGTCTTGAAGATCTTCT+TGG | - | chr3_1:56674717-56674736 | Msa0363990:CDS | 40.0% | |
| TTACATACACTGAGCATGCT+AGG | - | chr3_1:56674761-56674780 | Msa0363990:CDS | 40.0% | |
| CAAAGCATAGACAACATCCA+TGG | + | chr3_1:56674803-56674822 | None:intergenic | 40.0% | |
| !! | GTCTATGCTTTGAAGAGACA+AGG | - | chr3_1:56674811-56674830 | Msa0363990:CDS | 40.0% |
| !! | ATGTGTGATGTTGGGTTGAA+TGG | + | chr3_1:56673085-56673104 | None:intergenic | 40.0% |
| !! | CGGGGTTACAAATCGTTTTT+AGG | + | chr3_1:56673331-56673350 | None:intergenic | 40.0% |
| TTACGTTTGCAACGAACCTT+GGG | + | chr3_1:56673856-56673875 | None:intergenic | 40.0% | |
| ATTACGTTTGCAACGAACCT+TGG | + | chr3_1:56673857-56673876 | None:intergenic | 40.0% | |
| ATTCATTTGCGCAATACGCA+CGG | - | chr3_1:56674314-56674333 | Msa0363990:intron | 40.0% | |
| !!! | CAACTTTTGGTTTCAGTCGT+TGG | + | chr3_1:56674372-56674391 | None:intergenic | 40.0% |
| TATGGTATCACAGATCAGAG+CGG | + | chr3_1:56674421-56674440 | None:intergenic | 40.0% | |
| AAAATGTCAGGTCGTGGAAA+GGG | - | chr3_1:56674547-56674566 | Msa0363990:intron | 40.0% | |
| GTTCTTCGTGATAACATCCA+GGG | - | chr3_1:56674613-56674632 | Msa0363990:intron | 40.0% | |
| AGGTGTCTTGAAGATCTTCT+TGG | - | chr3_1:56674717-56674736 | Msa0363990:CDS | 40.0% | |
| TTACATACACTGAGCATGCT+AGG | - | chr3_1:56674761-56674780 | Msa0363990:CDS | 40.0% | |
| CAAAGCATAGACAACATCCA+TGG | + | chr3_1:56674803-56674822 | None:intergenic | 40.0% | |
| !! | GTCTATGCTTTGAAGAGACA+AGG | - | chr3_1:56674811-56674830 | Msa0363990:CDS | 40.0% |
| !! | GTGATGTTGGGTTGAATGGA+TGG | + | chr3_1:56673081-56673100 | None:intergenic | 45.0% |
| CGTTAGGTGTGATATGTCTC+TGG | + | chr3_1:56673137-56673156 | None:intergenic | 45.0% | |
| TGAGGGATTGAGTGTACATG+TGG | + | chr3_1:56673468-56673487 | None:intergenic | 45.0% | |
| AAATTTGTCCGGTCCCAACT+TGG | - | chr3_1:56673592-56673611 | Msa0363990:intron | 45.0% | |
| AATTTGTCCGGTCCCAACTT+GGG | - | chr3_1:56673593-56673612 | Msa0363990:intron | 45.0% | |
| ATGGTATCACAGATCAGAGC+GGG | + | chr3_1:56674420-56674439 | None:intergenic | 45.0% | |
| GAAAATGTCAGGTCGTGGAA+AGG | - | chr3_1:56674546-56674565 | Msa0363990:intron | 45.0% | |
| ! | AGGTGCAAAGAGGCATAGAA+AGG | - | chr3_1:56674591-56674610 | Msa0363990:intron | 45.0% |
| GGTTCTTCGTGATAACATCC+AGG | - | chr3_1:56674612-56674631 | Msa0363990:intron | 45.0% | |
| ! | GGTGGTGTTAAGAGAATCAG+TGG | - | chr3_1:56674673-56674692 | Msa0363990:intron | 45.0% |
| AGACAAGGAAGAACCCTCTA+TGG | - | chr3_1:56674826-56674845 | Msa0363990:CDS | 45.0% | |
| GGAAGAACCCTCTATGGATT+TGG | - | chr3_1:56674832-56674851 | Msa0363990:CDS | 45.0% | |
| AGAACCCTCTATGGATTTGG+AGG | - | chr3_1:56674835-56674854 | Msa0363990:CDS | 45.0% | |
| !! | GTGATGTTGGGTTGAATGGA+TGG | + | chr3_1:56673081-56673100 | None:intergenic | 45.0% |
| CGTTAGGTGTGATATGTCTC+TGG | + | chr3_1:56673137-56673156 | None:intergenic | 45.0% | |
| TGAGGGATTGAGTGTACATG+TGG | + | chr3_1:56673468-56673487 | None:intergenic | 45.0% | |
| AAATTTGTCCGGTCCCAACT+TGG | - | chr3_1:56673592-56673611 | Msa0363990:intron | 45.0% | |
| AATTTGTCCGGTCCCAACTT+GGG | - | chr3_1:56673593-56673612 | Msa0363990:intron | 45.0% | |
| ATGGTATCACAGATCAGAGC+GGG | + | chr3_1:56674420-56674439 | None:intergenic | 45.0% | |
| GAAAATGTCAGGTCGTGGAA+AGG | - | chr3_1:56674546-56674565 | Msa0363990:intron | 45.0% | |
| ! | AGGTGCAAAGAGGCATAGAA+AGG | - | chr3_1:56674591-56674610 | Msa0363990:intron | 45.0% |
| GGTTCTTCGTGATAACATCC+AGG | - | chr3_1:56674612-56674631 | Msa0363990:intron | 45.0% | |
| ! | GGTGGTGTTAAGAGAATCAG+TGG | - | chr3_1:56674673-56674692 | Msa0363990:intron | 45.0% |
| AGACAAGGAAGAACCCTCTA+TGG | - | chr3_1:56674826-56674845 | Msa0363990:CDS | 45.0% | |
| GGAAGAACCCTCTATGGATT+TGG | - | chr3_1:56674832-56674851 | Msa0363990:CDS | 45.0% | |
| AGAACCCTCTATGGATTTGG+AGG | - | chr3_1:56674835-56674854 | Msa0363990:CDS | 45.0% | |
| !!! | ATAATAAGATAATAATTTTT+CGG | - | chr3_1:56673646-56673665 | Msa0363990:intron | 5.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | - | chr3_1:56673646-56673665 | Msa0363990:intron | 5.0% |
| ACTTGTGCGGATAAGCGCTT+CGG | + | chr3_1:56674246-56674265 | None:intergenic | 50.0% | |
| GGAGGTAAGGGACTTGGAAA+GGG | - | chr3_1:56674568-56674587 | Msa0363990:intron | 50.0% | |
| ! | TTGGAAAGGGAGGTGCAAAG+AGG | - | chr3_1:56674581-56674600 | Msa0363990:intron | 50.0% |
| CATACACTGAGCATGCTAGG+AGG | - | chr3_1:56674764-56674783 | Msa0363990:CDS | 50.0% | |
| TGAGCATGCTAGGAGGAAGA+CGG | - | chr3_1:56674771-56674790 | Msa0363990:CDS | 50.0% | |
| ACTTGTGCGGATAAGCGCTT+CGG | + | chr3_1:56674246-56674265 | None:intergenic | 50.0% | |
| GGAGGTAAGGGACTTGGAAA+GGG | - | chr3_1:56674568-56674587 | Msa0363990:intron | 50.0% | |
| ! | TTGGAAAGGGAGGTGCAAAG+AGG | - | chr3_1:56674581-56674600 | Msa0363990:intron | 50.0% |
| CATACACTGAGCATGCTAGG+AGG | - | chr3_1:56674764-56674783 | Msa0363990:CDS | 50.0% | |
| TGAGCATGCTAGGAGGAAGA+CGG | - | chr3_1:56674771-56674790 | Msa0363990:CDS | 50.0% | |
| ! | ACATTGGCCCAAGTTGGGAC+CGG | + | chr3_1:56673603-56673622 | None:intergenic | 55.0% |
| CTCGCGAAAATGTCAGGTCG+TGG | - | chr3_1:56674541-56674560 | Msa0363990:intron | 55.0% | |
| ATGTCAGGTCGTGGAAAGGG+AGG | - | chr3_1:56674550-56674569 | Msa0363990:intron | 55.0% | |
| AGGTCGTGGAAAGGGAGGTA+AGG | - | chr3_1:56674555-56674574 | Msa0363990:intron | 55.0% | |
| GGTCGTGGAAAGGGAGGTAA+GGG | - | chr3_1:56674556-56674575 | Msa0363990:intron | 55.0% | |
| GGAAAGGGAGGTAAGGGACT+TGG | - | chr3_1:56674562-56674581 | Msa0363990:intron | 55.0% | |
| GGGAGGTAAGGGACTTGGAA+AGG | - | chr3_1:56674567-56674586 | Msa0363990:intron | 55.0% | |
| GGTAAGGGACTTGGAAAGGG+AGG | - | chr3_1:56674571-56674590 | Msa0363990:intron | 55.0% | |
| !! | TAGCAGGCTTGGTGATACCC+TGG | + | chr3_1:56674633-56674652 | None:intergenic | 55.0% |
| CAATCGGCGAATAGCAGGCT+TGG | + | chr3_1:56674644-56674663 | None:intergenic | 55.0% | |
| CAAGCCTGCTATTCGCCGAT+TGG | - | chr3_1:56674642-56674661 | Msa0363990:intron | 55.0% | |
| ! | ATTCGCCGATTGGCGAGAAG+AGG | - | chr3_1:56674652-56674671 | Msa0363990:intron | 55.0% |
| CACCACCTCTTCTCGCCAAT+CGG | + | chr3_1:56674660-56674679 | None:intergenic | 55.0% | |
| ! | ACATTGGCCCAAGTTGGGAC+CGG | + | chr3_1:56673603-56673622 | None:intergenic | 55.0% |
| CTCGCGAAAATGTCAGGTCG+TGG | - | chr3_1:56674541-56674560 | Msa0363990:intron | 55.0% | |
| ATGTCAGGTCGTGGAAAGGG+AGG | - | chr3_1:56674550-56674569 | Msa0363990:intron | 55.0% | |
| AGGTCGTGGAAAGGGAGGTA+AGG | - | chr3_1:56674555-56674574 | Msa0363990:intron | 55.0% | |
| GGTCGTGGAAAGGGAGGTAA+GGG | - | chr3_1:56674556-56674575 | Msa0363990:intron | 55.0% | |
| GGAAAGGGAGGTAAGGGACT+TGG | - | chr3_1:56674562-56674581 | Msa0363990:intron | 55.0% | |
| GGGAGGTAAGGGACTTGGAA+AGG | - | chr3_1:56674567-56674586 | Msa0363990:intron | 55.0% | |
| GGTAAGGGACTTGGAAAGGG+AGG | - | chr3_1:56674571-56674590 | Msa0363990:intron | 55.0% | |
| !! | TAGCAGGCTTGGTGATACCC+TGG | + | chr3_1:56674633-56674652 | None:intergenic | 55.0% |
| CAATCGGCGAATAGCAGGCT+TGG | + | chr3_1:56674644-56674663 | None:intergenic | 55.0% | |
| CAAGCCTGCTATTCGCCGAT+TGG | - | chr3_1:56674642-56674661 | Msa0363990:intron | 55.0% | |
| ! | ATTCGCCGATTGGCGAGAAG+AGG | - | chr3_1:56674652-56674671 | Msa0363990:intron | 55.0% |
| CACCACCTCTTCTCGCCAAT+CGG | + | chr3_1:56674660-56674679 | None:intergenic | 55.0% | |
| CTCGCCAATCGGCGAATAGC+AGG | + | chr3_1:56674649-56674668 | None:intergenic | 60.0% | |
| GAGGAAGACGGTGACAGCCA+TGG | - | chr3_1:56674783-56674802 | Msa0363990:CDS | 60.0% | |
| CTCGCCAATCGGCGAATAGC+AGG | + | chr3_1:56674649-56674668 | None:intergenic | 60.0% | |
| GAGGAAGACGGTGACAGCCA+TGG | - | chr3_1:56674783-56674802 | Msa0363990:CDS | 60.0% | |
| ! | CGCCGATTGGCGAGAAGAGG+TGG | - | chr3_1:56674655-56674674 | Msa0363990:intron | 65.0% |
| ! | CGCCGATTGGCGAGAAGAGG+TGG | - | chr3_1:56674655-56674674 | Msa0363990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 56672997 | 56674858 | 56672997 | ID=Msa0363990;Name=Msa0363990 |
| chr3_1 | mRNA | 56672997 | 56674858 | 56672997 | ID=Msa0363990-mRNA-1;Parent=Msa0363990;Name=Msa0363990-mRNA-1;_AED=0.42;_eAED=0.81;_QI=0|0|0|1|0|0|3|0|186 |
| chr3_1 | exon | 56674679 | 56674858 | 56674679 | ID=Msa0363990-mRNA-1:exon:10570;Parent=Msa0363990-mRNA-1 |
| chr3_1 | exon | 56674630 | 56674655 | 56674630 | ID=Msa0363990-mRNA-1:exon:10569;Parent=Msa0363990-mRNA-1 |
| chr3_1 | exon | 56672997 | 56673348 | 56672997 | ID=Msa0363990-mRNA-1:exon:10568;Parent=Msa0363990-mRNA-1 |
| chr3_1 | CDS | 56674679 | 56674858 | 56674679 | ID=Msa0363990-mRNA-1:cds;Parent=Msa0363990-mRNA-1 |
| chr3_1 | CDS | 56674630 | 56674655 | 56674630 | ID=Msa0363990-mRNA-1:cds;Parent=Msa0363990-mRNA-1 |
| chr3_1 | CDS | 56672997 | 56673348 | 56672997 | ID=Msa0363990-mRNA-1:cds;Parent=Msa0363990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
