Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005020 | Msa0507020 | 0.818170 | 2.254436e-52 | -8.615850e-47 |
| Msa0015570 | Msa0507020 | 0.814503 | 1.490470e-51 | -8.615850e-47 |
| Msa0019930 | Msa0507020 | 0.812053 | 5.143804e-51 | -8.615850e-47 |
| Msa0030070 | Msa0507020 | 0.817149 | 3.831086e-52 | -8.615850e-47 |
| Msa0032230 | Msa0507020 | 0.811588 | 6.494131e-51 | -8.615850e-47 |
| Msa0035140 | Msa0507020 | 0.816894 | 4.370646e-52 | -8.615850e-47 |
| Msa0037740 | Msa0507020 | 0.831665 | 1.467180e-55 | -8.615850e-47 |
| Msa0050150 | Msa0507020 | 0.807603 | 4.664076e-50 | -8.615850e-47 |
| Msa0053070 | Msa0507020 | 0.805904 | 1.065641e-49 | -8.615850e-47 |
| Msa0056180 | Msa0507020 | 0.841479 | 4.636274e-58 | -8.615850e-47 |
| Msa0074360 | Msa0507020 | 0.810879 | 9.256358e-51 | -8.615850e-47 |
| Msa0075530 | Msa0507020 | 0.818017 | 2.440494e-52 | -8.615850e-47 |
| Msa0077560 | Msa0507020 | 0.832466 | 9.302761e-56 | -8.615850e-47 |
| Msa0078130 | Msa0507020 | 0.801978 | 6.974890e-49 | -8.615850e-47 |
| Msa0098410 | Msa0507020 | 0.803793 | 2.942307e-49 | -8.615850e-47 |
| Msa0115550 | Msa0507020 | 0.808695 | 2.729876e-50 | -8.615850e-47 |
| Msa0125590 | Msa0507020 | 0.832128 | 1.128150e-55 | -8.615850e-47 |
| Msa0127680 | Msa0507020 | 0.802742 | 4.855515e-49 | -8.615850e-47 |
| Msa0140200 | Msa0507020 | 0.800590 | 1.342251e-48 | -8.615850e-47 |
| Msa0143670 | Msa0507020 | 0.806547 | 7.800012e-50 | -8.615850e-47 |
| Msa0159590 | Msa0507020 | 0.817979 | 2.489832e-52 | -8.615850e-47 |
| Msa0159620 | Msa0507020 | 0.809111 | 2.223835e-50 | -8.615850e-47 |
| Msa0168050 | Msa0507020 | 0.823286 | 1.502892e-53 | -8.615850e-47 |
| Msa0172480 | Msa0507020 | 0.822737 | 2.018182e-53 | -8.615850e-47 |
| Msa0186360 | Msa0507020 | 0.808048 | 3.750189e-50 | -8.615850e-47 |
| Msa0190730 | Msa0507020 | 0.804301 | 2.307001e-49 | -8.615850e-47 |
| Msa0194630 | Msa0507020 | 0.813826 | 2.102948e-51 | -8.615850e-47 |
| Msa0364680 | Msa0507020 | 0.807015 | 6.211860e-50 | -8.615850e-47 |
| Msa0367150 | Msa0507020 | 0.818979 | 1.477705e-52 | -8.615850e-47 |
| Msa0367520 | Msa0507020 | 0.816228 | 6.160251e-52 | -8.615850e-47 |
| Msa0373170 | Msa0507020 | 0.806789 | 6.935041e-50 | -8.615850e-47 |
| Msa0373500 | Msa0507020 | 0.839696 | 1.357416e-57 | -8.615850e-47 |
| Msa0373590 | Msa0507020 | 0.804305 | 2.302094e-49 | -8.615850e-47 |
| Msa0380490 | Msa0507020 | 0.832803 | 7.673241e-56 | -8.615850e-47 |
| Msa0380710 | Msa0507020 | 0.810498 | 1.118688e-50 | -8.615850e-47 |
| Msa0382230 | Msa0507020 | 0.801921 | 7.167058e-49 | -8.615850e-47 |
| Msa0404770 | Msa0507020 | 0.821105 | 4.818128e-53 | -8.615850e-47 |
| Msa0414880 | Msa0507020 | 0.831795 | 1.363204e-55 | -8.615850e-47 |
| Msa0421130 | Msa0507020 | 0.830304 | 3.166247e-55 | -8.615850e-47 |
| Msa0422050 | Msa0507020 | 0.813714 | 2.225813e-51 | -8.615850e-47 |
| Msa0430000 | Msa0507020 | 0.843486 | 1.360410e-58 | -8.615850e-47 |
| Msa0432010 | Msa0507020 | 0.847763 | 9.410072e-60 | -8.615850e-47 |
| Msa0433760 | Msa0507020 | 0.818167 | 2.257225e-52 | -8.615850e-47 |
| Msa0456670 | Msa0507020 | 0.863170 | 3.014098e-64 | -8.615850e-47 |
| Msa0459740 | Msa0507020 | 0.830439 | 2.934571e-55 | -8.615850e-47 |
| Msa0460780 | Msa0507020 | 0.968432 | 1.143251e-128 | -8.615850e-47 |
| Msa0466880 | Msa0507020 | 0.827210 | 1.773921e-54 | -8.615850e-47 |
| Msa0467690 | Msa0507020 | 0.807874 | 4.083554e-50 | -8.615850e-47 |
| Msa0468620 | Msa0507020 | 0.848284 | 6.758933e-60 | -8.615850e-47 |
| Msa0468700 | Msa0507020 | 0.839142 | 1.891344e-57 | -8.615850e-47 |
| Msa0477630 | Msa0507020 | 0.820463 | 6.768285e-53 | -8.615850e-47 |
| Msa0481890 | Msa0507020 | 0.864265 | 1.377021e-64 | -8.615850e-47 |
| Msa0269210 | Msa0507020 | 0.811058 | 8.463759e-51 | -8.615850e-47 |
| Msa0320250 | Msa0507020 | 0.807661 | 4.531734e-50 | -8.615850e-47 |
| Msa0320270 | Msa0507020 | 0.802580 | 5.245674e-49 | -8.615850e-47 |
| Msa0320290 | Msa0507020 | 0.809718 | 1.647356e-50 | -8.615850e-47 |
| Msa0363990 | Msa0507020 | 0.831725 | 1.418500e-55 | -8.615850e-47 |
| Msa0500570 | Msa0507020 | 0.840733 | 7.277423e-58 | -8.615850e-47 |
| Msa0503990 | Msa0507020 | 0.842639 | 2.287653e-58 | -8.615850e-47 |
| Msa0506540 | Msa0507020 | 0.814461 | 1.522846e-51 | -8.615850e-47 |
| Msa0507020 | Msa0513640 | 0.818084 | 2.357668e-52 | -8.615850e-47 |
| Msa0507020 | Msa0514020 | 0.812338 | 4.457615e-51 | -8.615850e-47 |
| Msa0507020 | Msa0514500 | 0.848598 | 5.534602e-60 | -8.615850e-47 |
| Msa0507020 | Msa0514580 | 0.830238 | 3.286775e-55 | -8.615850e-47 |
| Msa0507020 | Msa0520680 | 0.800748 | 1.245713e-48 | -8.615850e-47 |
| Msa0507020 | Msa0520870 | 0.846380 | 2.253219e-59 | -8.615850e-47 |
| Msa0507020 | Msa0521680 | 0.825313 | 5.016671e-54 | -8.615850e-47 |
| Msa0507020 | Msa0531960 | 0.802668 | 5.028797e-49 | -8.615850e-47 |
| Msa0507020 | Msa0548000 | 0.852498 | 4.437415e-61 | -8.615850e-47 |
| Msa0507020 | Msa0550590 | 0.815933 | 7.169376e-52 | -8.615850e-47 |
| Msa0507020 | Msa0561560 | 0.808862 | 2.514319e-50 | -8.615850e-47 |
| Msa0507020 | Msa0572830 | 0.812425 | 4.268096e-51 | -8.615850e-47 |
| Msa0507020 | Msa0580810 | 0.803862 | 2.846904e-49 | -8.615850e-47 |
| Msa0507020 | Msa0584530 | 0.809700 | 1.661932e-50 | -8.615850e-47 |
| Msa0507020 | Msa0586200 | 0.802654 | 5.064133e-49 | -8.615850e-47 |
| Msa0507020 | Msa0603410 | 0.829168 | 5.986119e-55 | -8.615850e-47 |
| Msa0507020 | Msa0606100 | 0.810449 | 1.146247e-50 | -8.615850e-47 |
| Msa0507020 | Msa0607800 | 0.811308 | 7.471350e-51 | -8.615850e-47 |
| Msa0507020 | Msa0615630 | 0.814598 | 1.419852e-51 | -8.615850e-47 |
| Msa0507020 | Msa0620500 | 0.832036 | 1.188792e-55 | -8.615850e-47 |
| Msa0507020 | Msa0620510 | 0.807514 | 4.870262e-50 | -8.615850e-47 |
| Msa0507020 | Msa0621710 | 0.810536 | 1.097704e-50 | -8.615850e-47 |
| Msa0507020 | Msa0625620 | 0.825819 | 3.806549e-54 | -8.615850e-47 |
| Msa0507020 | Msa0645340 | 0.801831 | 7.477509e-49 | -8.615850e-47 |
| Msa0507020 | Msa0647050 | 0.801646 | 8.162431e-49 | -8.615850e-47 |
| Msa0507020 | Msa0648040 | 0.806201 | 9.226907e-50 | -8.615850e-47 |
| Msa0507020 | Msa0659150 | 0.809116 | 2.217837e-50 | -8.615850e-47 |
| Msa0507020 | Msa0659200 | 0.809526 | 1.811295e-50 | -8.615850e-47 |
| Msa0507020 | Msa0690740 | 0.809063 | 2.276837e-50 | -8.615850e-47 |
| Msa0507020 | Msa0698730 | 0.815666 | 8.223175e-52 | -8.615850e-47 |
| Msa0507020 | Msa0705180 | 0.804678 | 1.925069e-49 | -8.615850e-47 |
| Msa0507020 | Msa0707260 | 0.817800 | 2.732340e-52 | -8.615850e-47 |
| Msa0507020 | Msa0709440 | 0.865920 | 4.159507e-65 | -8.615850e-47 |
| Msa0507020 | Msa0714520 | 0.808322 | 3.278577e-50 | -8.615850e-47 |
| Msa0507020 | Msa0717830 | 0.811357 | 7.288873e-51 | -8.615850e-47 |
| Msa0507020 | Msa0717900 | 0.823455 | 1.372428e-53 | -8.615850e-47 |
| Msa0507020 | Msa0720280 | 0.820339 | 7.225996e-53 | -8.615850e-47 |
| Msa0507020 | Msa0740710 | 0.815519 | 8.870151e-52 | -8.615850e-47 |
| Msa0507020 | Msa0747740 | 0.808861 | 2.515459e-50 | -8.615850e-47 |
| Msa0507020 | Msa0758590 | 0.832946 | 7.069170e-56 | -8.615850e-47 |
| Msa0507020 | Msa0773630 | 0.806823 | 6.823305e-50 | -8.615850e-47 |
| Msa0507020 | Msa0778600 | 0.811314 | 7.446795e-51 | -8.615850e-47 |
| Msa0507020 | Msa0780910 | 0.852537 | 4.324824e-61 | -8.615850e-47 |
| Msa0507020 | Msa0803140 | 0.817542 | 3.123594e-52 | -8.615850e-47 |
| Msa0507020 | Msa0811020 | 0.800435 | 1.443515e-48 | -8.615850e-47 |
| Msa0507020 | Msa0815970 | 0.806198 | 9.241968e-50 | -8.615850e-47 |
| Msa0507020 | Msa0816080 | 0.820173 | 7.886890e-53 | -8.615850e-47 |
| Msa0507020 | Msa0816230 | 0.801291 | 9.648544e-49 | -8.615850e-47 |
| Msa0507020 | Msa0821160 | 0.853702 | 2.007010e-61 | -8.615850e-47 |
| Msa0507020 | Msa0837460 | 0.805961 | 1.036538e-49 | -8.615850e-47 |
| Msa0507020 | Msa0861440 | 0.814282 | 1.668086e-51 | -8.615850e-47 |
| Msa0507020 | Msa0866530 | 0.835446 | 1.670020e-56 | -8.615850e-47 |
| Msa0507020 | Msa0879920 | 0.801202 | 1.006490e-48 | -8.615850e-47 |
| Msa0507020 | Msa0880280 | 0.800484 | 1.410658e-48 | -8.615850e-47 |
| Msa0507020 | Msa0900760 | 0.815309 | 9.874489e-52 | -8.615850e-47 |
| Msa0507020 | Msa0909760 | 0.851189 | 1.043798e-60 | -8.615850e-47 |
| Msa0507020 | Msa0926310 | 0.812702 | 3.711049e-51 | -8.615850e-47 |
| Msa0507020 | Msa0960770 | 0.813838 | 2.090241e-51 | -8.615850e-47 |
| Msa0507020 | Msa1000780 | 0.817725 | 2.840899e-52 | -8.615850e-47 |
| Msa0507020 | Msa1002640 | 0.806374 | 8.486152e-50 | -8.615850e-47 |
| Msa0507020 | Msa1008670 | 0.853189 | 2.815789e-61 | -8.615850e-47 |
| Msa0507020 | Msa1033920 | 0.884847 | 1.351498e-71 | -8.615850e-47 |
| Msa0507020 | Msa1034400 | 0.812598 | 3.911413e-51 | -8.615850e-47 |
| Msa0507020 | Msa1037540 | 0.812374 | 4.379248e-51 | -8.615850e-47 |
| Msa0507020 | Msa1074150 | 0.813774 | 2.159445e-51 | -8.615850e-47 |
| Msa0507020 | Msa1076020 | 0.821053 | 4.954085e-53 | -8.615850e-47 |
| Msa0507020 | Msa1084530 | 0.857833 | 1.246337e-62 | -8.615850e-47 |
| Msa0507020 | Msa1114630 | 0.816986 | 4.168127e-52 | -8.615850e-47 |
| Msa0507020 | Msa1116190 | 0.817077 | 3.976206e-52 | -8.615850e-47 |
| Msa0507020 | Msa1116660 | 0.831224 | 1.884160e-55 | -8.615850e-47 |
| Msa0507020 | Msa1116740 | 0.802500 | 5.446877e-49 | -8.615850e-47 |
| Msa0507020 | Msa1125820 | 0.862243 | 5.816546e-64 | -8.615850e-47 |
| Msa0507020 | Msa1125990 | 0.863019 | 3.356559e-64 | -8.615850e-47 |
| Msa0507020 | Msa1127280 | 0.813551 | 2.417653e-51 | -8.615850e-47 |
| Msa0507020 | Msa1130420 | 0.828886 | 7.007512e-55 | -8.615850e-47 |
| Msa0507020 | Msa1132530 | 0.815561 | 8.681695e-52 | -8.615850e-47 |
| Msa0507020 | Msa1139050 | 0.803231 | 3.848511e-49 | -8.615850e-47 |
| Msa0507020 | Msa1159590 | 0.819649 | 1.039308e-52 | -8.615850e-47 |
| Msa0507020 | Msa1162880 | 0.863403 | 2.551864e-64 | -8.615850e-47 |
| Msa0507020 | Msa1163180 | 0.823322 | 1.474565e-53 | -8.615850e-47 |
| Msa0507020 | Msa1165480 | 0.814219 | 1.722055e-51 | -8.615850e-47 |
| Msa0507020 | Msa1171290 | 0.862933 | 3.566675e-64 | -8.615850e-47 |
| Msa0507020 | Msa1188790 | 0.814476 | 1.510935e-51 | -8.615850e-47 |
| Msa0507020 | Msa1190390 | 0.811776 | 5.910434e-51 | -8.615850e-47 |
| Msa0507020 | Msa1201780 | 0.809532 | 1.806332e-50 | -8.615850e-47 |
| Msa0507020 | Msa1215980 | 0.832047 | 1.181147e-55 | -8.615850e-47 |
| Msa0507020 | Msa1215990 | 0.808083 | 3.686470e-50 | -8.615850e-47 |
| Msa0507020 | Msa1218820 | 0.843281 | 1.543426e-58 | -8.615850e-47 |
| Msa0507020 | Msa1244240 | 0.800919 | 1.149875e-48 | -8.615850e-47 |
| Msa0507020 | Msa1254540 | 0.830466 | 2.890501e-55 | -8.615850e-47 |
| Msa0507020 | Msa1300460 | 0.803470 | 3.432996e-49 | -8.615850e-47 |
| Msa0507020 | Msa1301820 | 0.810444 | 1.149036e-50 | -8.615850e-47 |
| Msa0507020 | Msa1305780 | 0.807234 | 5.584341e-50 | -8.615850e-47 |
| Msa0507020 | Msa1306570 | 0.802047 | 6.753269e-49 | -8.615850e-47 |
| Msa0507020 | Msa1332950 | 0.815031 | 1.138665e-51 | -8.615850e-47 |
| Msa0507020 | Msa1339170 | 0.806089 | 9.741724e-50 | -8.615850e-47 |
| Msa0507020 | Msa1339230 | 0.855085 | 7.990173e-62 | -8.615850e-47 |
| Msa0507020 | Msa1356060 | 0.811454 | 6.944696e-51 | -8.615850e-47 |
| Msa0507020 | Msa1366150 | 0.805428 | 1.341449e-49 | -8.615850e-47 |
| Msa0507020 | Msa1368750 | 0.844899 | 5.679407e-59 | -8.615850e-47 |
| Msa0507020 | Msa1374790 | 0.842169 | 3.047072e-58 | -8.615850e-47 |
| Msa0507020 | Msa1375350 | 0.804736 | 1.872153e-49 | -8.615850e-47 |
| Msa0507020 | Msa1381470 | 0.836088 | 1.148447e-56 | -8.615850e-47 |
| Msa0507020 | Msa1387440 | 0.835530 | 1.590779e-56 | -8.615850e-47 |
| Msa0507020 | Msa1387500 | 0.830179 | 3.397482e-55 | -8.615850e-47 |
| Msa0507020 | Msa1393560 | 0.818742 | 1.672126e-52 | -8.615850e-47 |
| Msa0507020 | Msa1399190 | 0.835282 | 1.837796e-56 | -8.615850e-47 |
| Msa0507020 | Msa1410190 | 0.808235 | 3.421480e-50 | -8.615850e-47 |
| Msa0507020 | Msa1426320 | 0.831816 | 1.347011e-55 | -8.615850e-47 |
| Msa0507020 | Msa1435100 | 0.804743 | 1.865353e-49 | -8.615850e-47 |
| Msa0507020 | Msa1439730 | 0.812164 | 4.864434e-51 | -8.615850e-47 |
| Msa0507020 | Msa1442260 | 0.806419 | 8.300815e-50 | -8.615850e-47 |
| Msa0507020 | Msa1446100 | 0.830990 | 2.150975e-55 | -8.615850e-47 |
| Msa0507020 | Msa1447170 | 0.849842 | 2.494107e-60 | -8.615850e-47 |
| Msa0507020 | Msa1451820 | 0.841946 | 3.491026e-58 | -8.615850e-47 |
| Msa0507020 | Msa1454010 | 0.825344 | 4.934688e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGCCAATCGACGAATTGC+AGG | 0.267346 | 3_4:+53911857 | None:intergenic |
| GGAAGAACCCTCTATGGATT+TGG | 0.370047 | 3_4:-53911671 | Msa0507020:three_prime_UTR |
| AGACAAGGAAGAACCCTCTA+TGG | 0.396310 | 3_4:-53911677 | Msa0507020:three_prime_UTR |
| AGGTGTCTTGAAGATCTTCT+TGG | 0.405705 | 3_4:-53911786 | Msa0507020:three_prime_UTR |
| GGGAGGTAAGGGACTTGGAA+AGG | 0.449159 | 3_4:-53911936 | Msa0507020:CDS |
| GGAGGTAAGGGACTTGGAAA+GGG | 0.467307 | 3_4:-53911935 | Msa0507020:CDS |
| GGAAAGGGAGGTAAGGGACT+TGG | 0.470633 | 3_4:-53911941 | Msa0507020:CDS |
| TTCAACCTCCAAATCCATAG+AGG | 0.476286 | 3_4:+53911663 | None:intergenic |
| CTGTTGAAAATGTCAGGTCG+TGG | 0.487154 | 3_4:-53911962 | None:intergenic |
| CAATCGACGAATTGCAGGCT+TGG | 0.491738 | 3_4:+53911862 | None:intergenic |
| AGGTCGTGGAAAGGGAGGTA+AGG | 0.492819 | 3_4:-53911948 | Msa0507020:CDS |
| AGTTCTCCGCGATAACATCC+AGG | 0.504812 | 3_4:-53911891 | Msa0507020:CDS |
| AGAACCCTCTATGGATTTGG+AGG | 0.508817 | 3_4:-53911668 | Msa0507020:three_prime_UTR |
| GAAGATCTTCAAGACACCTC+TGG | 0.510902 | 3_4:+53911790 | None:intergenic |
| CAAGCCTGCAATTCGTCGAT+TGG | 0.511374 | 3_4:-53911861 | Msa0507020:CDS |
| TTACATACACTGAGCATGCT+AGG | 0.520723 | 3_4:-53911742 | Msa0507020:three_prime_UTR |
| GAGGAAGACGGTGACAGCCA+TGG | 0.546349 | 3_4:-53911720 | Msa0507020:three_prime_UTR |
| AGGGAGGTGCAAAGAGGCAT+AGG | 0.547891 | 3_4:-53911916 | Msa0507020:CDS |
| AAAATGTCAGGTCGTGGAAA+GGG | 0.548959 | 3_4:-53911956 | None:intergenic |
| GGTAAGGGACTTGGAAAGGG+AGG | 0.560743 | 3_4:-53911932 | Msa0507020:CDS |
| GGTCGTGGAAAGGGAGGTAA+GGG | 0.564245 | 3_4:-53911947 | Msa0507020:CDS |
| GTCTATGCTTTGAAGAGACA+AGG | 0.570048 | 3_4:-53911692 | Msa0507020:three_prime_UTR |
| GAAAATGTCAGGTCGTGGAA+AGG | 0.584382 | 3_4:-53911957 | None:intergenic |
| CGTCGATTGGCGAGAAGAGG+CGG | 0.593362 | 3_4:-53911848 | Msa0507020:CDS |
| GGCGGTGTTAAGAGAATCAG+TGG | 0.595979 | 3_4:-53911830 | Msa0507020:CDS |
| ATTCGTCGATTGGCGAGAAG+AGG | 0.604517 | 3_4:-53911851 | Msa0507020:CDS |
| TTGCAGGCTTGGTGATACCC+TGG | 0.613296 | 3_4:+53911873 | None:intergenic |
| CAAAGCATAGACAACATCCA+TGG | 0.629842 | 3_4:+53911703 | None:intergenic |
| TCAACCTCCAAATCCATAGA+GGG | 0.633476 | 3_4:+53911664 | None:intergenic |
| ATGTCAGGTCGTGGAAAGGG+AGG | 0.643397 | 3_4:-53911953 | None:intergenic |
| TGATACCCTGGATGTTATCG+CGG | 0.665173 | 3_4:+53911885 | None:intergenic |
| TGAGCATGCTAGGAGGAAGA+CGG | 0.671956 | 3_4:-53911732 | Msa0507020:three_prime_UTR |
| GTTCTCCGCGATAACATCCA+GGG | 0.672360 | 3_4:-53911890 | Msa0507020:CDS |
| ATCTTAAAGAACAATTACAC+AGG | 0.681255 | 3_4:+53911597 | None:intergenic |
| TTGGAAAGGGAGGTGCAAAG+AGG | 0.683014 | 3_4:-53911922 | Msa0507020:CDS |
| TTGATCTATGAAGAAACCAG+AGG | 0.704889 | 3_4:-53911806 | Msa0507020:exon |
| CATACACTGAGCATGCTAGG+AGG | 0.707859 | 3_4:-53911739 | Msa0507020:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATCTTAAAGAACAATTACAC+AGG | + | chr3_4:53911932-53911951 | None:intergenic | 25.0% |
| TTGATCTATGAAGAAACCAG+AGG | - | chr3_4:53911720-53911739 | Msa0507020:three_prime_UTR | 35.0% | |
| AGGTGTCTTGAAGATCTTCT+TGG | - | chr3_4:53911740-53911759 | Msa0507020:three_prime_UTR | 40.0% | |
| TTACATACACTGAGCATGCT+AGG | - | chr3_4:53911784-53911803 | Msa0507020:three_prime_UTR | 40.0% | |
| CAAAGCATAGACAACATCCA+TGG | + | chr3_4:53911826-53911845 | None:intergenic | 40.0% | |
| !! | GTCTATGCTTTGAAGAGACA+AGG | - | chr3_4:53911834-53911853 | Msa0507020:CDS | 40.0% |
| TCAACCTCCAAATCCATAGA+GGG | + | chr3_4:53911865-53911884 | None:intergenic | 40.0% | |
| TTCAACCTCCAAATCCATAG+AGG | + | chr3_4:53911866-53911885 | None:intergenic | 40.0% | |
| TGATACCCTGGATGTTATCG+CGG | + | chr3_4:53911644-53911663 | None:intergenic | 45.0% | |
| GAAGATCTTCAAGACACCTC+TGG | + | chr3_4:53911739-53911758 | None:intergenic | 45.0% | |
| AGACAAGGAAGAACCCTCTA+TGG | - | chr3_4:53911849-53911868 | Msa0507020:CDS | 45.0% | |
| GGAAGAACCCTCTATGGATT+TGG | - | chr3_4:53911855-53911874 | Msa0507020:CDS | 45.0% | |
| AGAACCCTCTATGGATTTGG+AGG | - | chr3_4:53911858-53911877 | Msa0507020:CDS | 45.0% | |
| GGAGGTAAGGGACTTGGAAA+GGG | - | chr3_4:53911591-53911610 | Msa0507020:three_prime_UTR | 50.0% | |
| ! | TTGGAAAGGGAGGTGCAAAG+AGG | - | chr3_4:53911604-53911623 | Msa0507020:three_prime_UTR | 50.0% |
| AGTTCTCCGCGATAACATCC+AGG | - | chr3_4:53911635-53911654 | Msa0507020:intron | 50.0% | |
| GTTCTCCGCGATAACATCCA+GGG | - | chr3_4:53911636-53911655 | Msa0507020:intron | 50.0% | |
| CAATCGACGAATTGCAGGCT+TGG | + | chr3_4:53911667-53911686 | None:intergenic | 50.0% | |
| CAAGCCTGCAATTCGTCGAT+TGG | - | chr3_4:53911665-53911684 | Msa0507020:three_prime_UTR | 50.0% | |
| ! | ATTCGTCGATTGGCGAGAAG+AGG | - | chr3_4:53911675-53911694 | Msa0507020:three_prime_UTR | 50.0% |
| ! | GGCGGTGTTAAGAGAATCAG+TGG | - | chr3_4:53911696-53911715 | Msa0507020:three_prime_UTR | 50.0% |
| CATACACTGAGCATGCTAGG+AGG | - | chr3_4:53911787-53911806 | Msa0507020:three_prime_UTR | 50.0% | |
| TGAGCATGCTAGGAGGAAGA+CGG | - | chr3_4:53911794-53911813 | Msa0507020:three_prime_UTR | 50.0% | |
| AGGTCGTGGAAAGGGAGGTA+AGG | - | chr3_4:53911578-53911597 | Msa0507020:three_prime_UTR | 55.0% | |
| GGTCGTGGAAAGGGAGGTAA+GGG | - | chr3_4:53911579-53911598 | Msa0507020:three_prime_UTR | 55.0% | |
| GGAAAGGGAGGTAAGGGACT+TGG | - | chr3_4:53911585-53911604 | Msa0507020:three_prime_UTR | 55.0% | |
| GGGAGGTAAGGGACTTGGAA+AGG | - | chr3_4:53911590-53911609 | Msa0507020:three_prime_UTR | 55.0% | |
| GGTAAGGGACTTGGAAAGGG+AGG | - | chr3_4:53911594-53911613 | Msa0507020:three_prime_UTR | 55.0% | |
| ! | AGGGAGGTGCAAAGAGGCAT+AGG | - | chr3_4:53911610-53911629 | Msa0507020:three_prime_UTR | 55.0% |
| !! | TTGCAGGCTTGGTGATACCC+TGG | + | chr3_4:53911656-53911675 | None:intergenic | 55.0% |
| CTCGCCAATCGACGAATTGC+AGG | + | chr3_4:53911672-53911691 | None:intergenic | 55.0% | |
| ! | CGTCGATTGGCGAGAAGAGG+CGG | - | chr3_4:53911678-53911697 | Msa0507020:three_prime_UTR | 60.0% |
| GAGGAAGACGGTGACAGCCA+TGG | - | chr3_4:53911806-53911825 | Msa0507020:exon | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 53911577 | 53911971 | 53911577 | ID=Msa0507020;Name=Msa0507020 |
| chr3_4 | mRNA | 53911577 | 53911971 | 53911577 | ID=Msa0507020-mRNA-1;Parent=Msa0507020;Name=Msa0507020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|0|0|2|227|48 |
| chr3_4 | exon | 53911577 | 53911640 | 53911577 | ID=Msa0507020-mRNA-1:exon:11977;Parent=Msa0507020-mRNA-1 |
| chr3_4 | exon | 53911662 | 53911971 | 53911662 | ID=Msa0507020-mRNA-1:exon:11976;Parent=Msa0507020-mRNA-1 |
| chr3_4 | CDS | 53911825 | 53911971 | 53911825 | ID=Msa0507020-mRNA-1:cds;Parent=Msa0507020-mRNA-1 |
| chr3_4 | three_prime_UTR | 53911662 | 53911824 | 53911662 | ID=Msa0507020-mRNA-1:three_prime_utr;Parent=Msa0507020-mRNA-1 |
| chr3_4 | three_prime_UTR | 53911577 | 53911640 | 53911577 | ID=Msa0507020-mRNA-1:three_prime_utr;Parent=Msa0507020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
