Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365010 | RHN67602.1 | 79.574 | 235 | 32 | 2 | 1 | 219 | 6 | 240 | 7.11e-128 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365010 | A0A396IPT9 | 79.574 | 235 | 32 | 2 | 1 | 219 | 6 | 240 | 3.39e-128 | 375 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0200260 | Msa0365010 | 0.823881 | 1.090677e-53 | -8.615850e-47 |
| Msa0365010 | Msa0457180 | 0.840038 | 1.106225e-57 | -8.615850e-47 |
| Msa0365010 | Msa0657970 | 0.810082 | 1.375468e-50 | -8.615850e-47 |
| Msa0365010 | Msa0816150 | 0.800904 | 1.157952e-48 | -8.615850e-47 |
| Msa0365010 | Msa1374550 | 0.801445 | 8.974102e-49 | -8.615850e-47 |
| Msa0365010 | Msa1438250 | 0.825122 | 5.569256e-54 | -8.615850e-47 |
| Msa0243100 | Msa0365010 | 0.803789 | 2.948442e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365010 | MtrunA17_Chr3g0104461 | 79.574 | 235 | 32 | 2 | 1 | 219 | 6 | 240 | 6.54e-132 | 375 |
| Msa0365010 | MtrunA17_Chr6g0477881 | 32.394 | 142 | 68 | 3 | 13 | 127 | 282 | 422 | 4.29e-11 | 63.9 |
| Msa0365010 | MtrunA17_Chr6g0477921 | 32.394 | 142 | 68 | 3 | 13 | 127 | 282 | 422 | 4.66e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCGAACTTATCATATTT+TGG | 0.135203 | 3_1:+58601490 | None:intergenic |
| TACAAGAAGGTTGGATTTAA+AGG | 0.166087 | 3_1:-58600667 | Msa0365010:CDS |
| TACTTCTCGACACCAATTTA+AGG | 0.181120 | 3_1:-58601419 | Msa0365010:CDS |
| CGGCAGATACTTCTTGATTC+TGG | 0.254435 | 3_1:+58600894 | None:intergenic |
| CTCTTACAGCGTCCTTAAAT+TGG | 0.256152 | 3_1:+58601407 | None:intergenic |
| GATACTGAATTTGAAGTCTT+TGG | 0.277517 | 3_1:+58601453 | None:intergenic |
| TTTCTCTTTGCCGCTTCATT+TGG | 0.322340 | 3_1:+58601001 | None:intergenic |
| CGAGAAGTTGTCAAATGAAT+TGG | 0.331298 | 3_1:-58601551 | Msa0365010:CDS |
| TTCCAGGTCTAAGTGGATTA+AGG | 0.335256 | 3_1:-58601194 | Msa0365010:CDS |
| TGAATTGGACAATGCATCTA+AGG | 0.342142 | 3_1:-58601536 | Msa0365010:CDS |
| AATTCCATCCCAACTTCTTA+AGG | 0.367504 | 3_1:+58600464 | None:intergenic |
| TGCATGCAACTTCCAACTTT+CGG | 0.380224 | 3_1:+58600489 | None:intergenic |
| TGAGGACGAGGAGGAGGAGG+AGG | 0.395098 | 3_1:-58600529 | Msa0365010:CDS |
| TCATCATCGTTAATCACAAT+TGG | 0.407508 | 3_1:+58600564 | None:intergenic |
| AGAGAGTTAGAGCTGTTTGT+TGG | 0.416562 | 3_1:-58601333 | Msa0365010:CDS |
| TGTTAAATTTCAAGAGTTCC+AGG | 0.422642 | 3_1:-58601210 | Msa0365010:CDS |
| ACATAAGATGTTACATGGTA+AGG | 0.425116 | 3_1:+58600797 | None:intergenic |
| CAACTAGAAGTGCTTGTTGA+TGG | 0.433255 | 3_1:-58600929 | Msa0365010:CDS |
| TAAGGAAGATTCTGAAATGA+AGG | 0.442909 | 3_1:-58601518 | Msa0365010:CDS |
| GCATGCATGCCTTAAGAAGT+TGG | 0.444619 | 3_1:-58600473 | Msa0365010:CDS |
| TGATGAGGACGAGGAGGAGG+AGG | 0.461136 | 3_1:-58600532 | Msa0365010:CDS |
| ACAAGGTTCACTGCAGAAAT+CGG | 0.464428 | 3_1:+58600836 | None:intergenic |
| ATGTTGATATGATAGTTATC+AGG | 0.464835 | 3_1:-58601609 | None:intergenic |
| TGATGATGAGGACGAGGAGG+AGG | 0.470751 | 3_1:-58600535 | Msa0365010:CDS |
| TTGCTTAGAGTATTTCCCTT+AGG | 0.472524 | 3_1:+58601031 | None:intergenic |
| GTTATATCAGGGGAGGCCTA+AGG | 0.479297 | 3_1:-58601047 | Msa0365010:intron |
| AACTAGAAGTGCTTGTTGAT+GGG | 0.480143 | 3_1:-58600928 | Msa0365010:CDS |
| GGTCAGCAGTTGTTGGTACA+AGG | 0.494932 | 3_1:+58600819 | None:intergenic |
| CATGCATGCCTTAAGAAGTT+GGG | 0.518065 | 3_1:-58600472 | Msa0365010:CDS |
| GGACTGGCTGCATCTCTCCC+AGG | 0.526741 | 3_1:+58600585 | None:intergenic |
| ACTTCTTGATTCTGGTTGAG+AGG | 0.533490 | 3_1:+58600902 | None:intergenic |
| AAGAAGGTTGGATTTAAAGG+TGG | 0.540528 | 3_1:-58600664 | Msa0365010:CDS |
| CATAAGATGTTACATGGTAA+GGG | 0.543184 | 3_1:+58600798 | None:intergenic |
| CTTCAAATTCAGTATCGGAA+TGG | 0.545779 | 3_1:-58601446 | Msa0365010:CDS |
| ATCGTTAATCACAATTGGAC+TGG | 0.547319 | 3_1:+58600569 | None:intergenic |
| TGGATTTAAAGGTGGTGAGG+AGG | 0.548100 | 3_1:-58600656 | Msa0365010:CDS |
| TCAAGAGTTCCAGGTCTAAG+TGG | 0.550516 | 3_1:-58601201 | Msa0365010:CDS |
| AAAGACTTCAAATTCAGTAT+CGG | 0.560509 | 3_1:-58601451 | Msa0365010:CDS |
| ACTAGAAGTGCTTGTTGATG+GGG | 0.564459 | 3_1:-58600927 | Msa0365010:CDS |
| TTATATCAGGGGAGGCCTAA+GGG | 0.564632 | 3_1:-58601046 | Msa0365010:intron |
| ATCTGCCGATGACGATATGT+TGG | 0.564735 | 3_1:-58600879 | Msa0365010:CDS |
| TCCGATACATACTTGTGGAA+TGG | 0.565615 | 3_1:-58601233 | Msa0365010:CDS |
| GAGTTAAATGATCCGAAAGT+TGG | 0.567736 | 3_1:-58600501 | Msa0365010:CDS |
| TTCCTTAATCCACTTAGACC+TGG | 0.569538 | 3_1:+58601192 | None:intergenic |
| TTTCGCCAACATATCGTCAT+CGG | 0.574686 | 3_1:+58600874 | None:intergenic |
| ACCATTCCACAAGTATGTAT+CGG | 0.577341 | 3_1:+58601232 | None:intergenic |
| GGTTGGATTTAAAGGTGGTG+AGG | 0.580205 | 3_1:-58600659 | Msa0365010:CDS |
| AGACTAATACATTTAGGGTG+AGG | 0.581685 | 3_1:-58601264 | Msa0365010:CDS |
| AAGAAGCACAGTGTGTGGAA+TGG | 0.582218 | 3_1:-58601578 | Msa0365010:CDS |
| CCTAATCAAAGCACGAGGAG+TGG | 0.590323 | 3_1:+58600421 | None:intergenic |
| TGGTAAGGGTCAGCAGTTGT+TGG | 0.600697 | 3_1:+58600812 | None:intergenic |
| CTACATCCGATACATACTTG+TGG | 0.602865 | 3_1:-58601238 | Msa0365010:CDS |
| AAGGAAGATTCTGAAATGAA+GGG | 0.614609 | 3_1:-58601517 | Msa0365010:CDS |
| CAATGTTAAACCAAATGAAG+CGG | 0.616971 | 3_1:-58601011 | Msa0365010:CDS |
| CATGCCTTAAGAAGTTGGGA+TGG | 0.618854 | 3_1:-58600468 | Msa0365010:CDS |
| ATACTAAGAAGCACAGTGTG+TGG | 0.621664 | 3_1:-58601583 | Msa0365010:CDS |
| TAGTAATAGATTGAGAACCT+TGG | 0.663166 | 3_1:-58600631 | Msa0365010:CDS |
| TGATGATGATGAGGACGAGG+AGG | 0.696764 | 3_1:-58600538 | Msa0365010:CDS |
| AAAGTCCTAATCAAAGCACG+AGG | 0.735501 | 3_1:+58600416 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTAGTTACTTAATAA+TGG | - | chr3_1:58601271-58601290 | Msa0365010:CDS | 15.0% |
| !! | AATTCTTAGTTACTTAATAA+TGG | - | chr3_1:58601271-58601290 | Msa0365010:CDS | 15.0% |
| !! | AAAATAAAATTTACCAGGAA+TGG | - | chr3_1:58600658-58600677 | Msa0365010:CDS | 20.0% |
| !!! | AAACATTGTATGAACATTTT+TGG | + | chr3_1:58600717-58600736 | None:intergenic | 20.0% |
| !! | GAAAAAGACTAATACATTTA+GGG | - | chr3_1:58600750-58600769 | Msa0365010:intron | 20.0% |
| !!! | TATAAAATTACCCTCTTTTT+AGG | + | chr3_1:58600883-58600902 | None:intergenic | 20.0% |
| !! | AAAATAAAATTTACCAGGAA+TGG | - | chr3_1:58600658-58600677 | Msa0365010:CDS | 20.0% |
| !!! | AAACATTGTATGAACATTTT+TGG | + | chr3_1:58600717-58600736 | None:intergenic | 20.0% |
| !! | GAAAAAGACTAATACATTTA+GGG | - | chr3_1:58600750-58600769 | Msa0365010:intron | 20.0% |
| !!! | TATAAAATTACCCTCTTTTT+AGG | + | chr3_1:58600883-58600902 | None:intergenic | 20.0% |
| ! | AAAGACTTCAAATTCAGTAT+CGG | - | chr3_1:58600568-58600587 | Msa0365010:CDS | 25.0% |
| ! | GCAGAAAAATAAAATTTACC+AGG | - | chr3_1:58600653-58600672 | Msa0365010:CDS | 25.0% |
| ! | CGAAAAAGACTAATACATTT+AGG | - | chr3_1:58600749-58600768 | Msa0365010:intron | 25.0% |
| !!! | GTTCTTTTTGTTTTTGTGTT+TGG | - | chr3_1:58600925-58600944 | Msa0365010:CDS | 25.0% |
| !!! | CTAATGTGTTTGTTATATCA+GGG | - | chr3_1:58600961-58600980 | Msa0365010:CDS | 25.0% |
| !!! | TAATGTGTTTGTTATATCAG+GGG | - | chr3_1:58600962-58600981 | Msa0365010:CDS | 25.0% |
| ! | GAAAGAAAAAAGTTACAAGA+AGG | - | chr3_1:58601339-58601358 | Msa0365010:intron | 25.0% |
| ! | AAAGACTTCAAATTCAGTAT+CGG | - | chr3_1:58600568-58600587 | Msa0365010:CDS | 25.0% |
| ! | GCAGAAAAATAAAATTTACC+AGG | - | chr3_1:58600653-58600672 | Msa0365010:CDS | 25.0% |
| ! | CGAAAAAGACTAATACATTT+AGG | - | chr3_1:58600749-58600768 | Msa0365010:intron | 25.0% |
| !!! | GTTCTTTTTGTTTTTGTGTT+TGG | - | chr3_1:58600925-58600944 | Msa0365010:CDS | 25.0% |
| !!! | CTAATGTGTTTGTTATATCA+GGG | - | chr3_1:58600961-58600980 | Msa0365010:CDS | 25.0% |
| !!! | TAATGTGTTTGTTATATCAG+GGG | - | chr3_1:58600962-58600981 | Msa0365010:CDS | 25.0% |
| ! | GAAAGAAAAAAGTTACAAGA+AGG | - | chr3_1:58601339-58601358 | Msa0365010:intron | 25.0% |
| !! | TAAGGAAGATTCTGAAATGA+AGG | - | chr3_1:58600501-58600520 | Msa0365010:CDS | 30.0% |
| !! | AAGGAAGATTCTGAAATGAA+GGG | - | chr3_1:58600502-58600521 | Msa0365010:CDS | 30.0% |
| ! | GCATCGAACTTATCATATTT+TGG | + | chr3_1:58600532-58600551 | None:intergenic | 30.0% |
| ! | GATACTGAATTTGAAGTCTT+TGG | + | chr3_1:58600569-58600588 | None:intergenic | 30.0% |
| AGAGAGCTCAATGTATTAAA+TGG | - | chr3_1:58600631-58600650 | Msa0365010:CDS | 30.0% | |
| TGTTAAATTTCAAGAGTTCC+AGG | - | chr3_1:58600809-58600828 | Msa0365010:intron | 30.0% | |
| TCAATCAAGAACCTAAAAAG+AGG | - | chr3_1:58600869-58600888 | Msa0365010:CDS | 30.0% | |
| CAATCAAGAACCTAAAAAGA+GGG | - | chr3_1:58600870-58600889 | Msa0365010:CDS | 30.0% | |
| !! | GCTAATGTGTTTGTTATATC+AGG | - | chr3_1:58600960-58600979 | Msa0365010:CDS | 30.0% |
| CAATGTTAAACCAAATGAAG+CGG | - | chr3_1:58601008-58601027 | Msa0365010:CDS | 30.0% | |
| CATAAGATGTTACATGGTAA+GGG | + | chr3_1:58601224-58601243 | None:intergenic | 30.0% | |
| ACATAAGATGTTACATGGTA+AGG | + | chr3_1:58601225-58601244 | None:intergenic | 30.0% | |
| GAAAAAAGTTACAAGAAGGT+TGG | - | chr3_1:58601343-58601362 | Msa0365010:intron | 30.0% | |
| TACAAGAAGGTTGGATTTAA+AGG | - | chr3_1:58601352-58601371 | Msa0365010:intron | 30.0% | |
| TAGTAATAGATTGAGAACCT+TGG | - | chr3_1:58601388-58601407 | Msa0365010:intron | 30.0% | |
| !!! | ACCATCATACACTTTTTTGA+AGG | + | chr3_1:58601414-58601433 | None:intergenic | 30.0% |
| TCATCATCGTTAATCACAAT+TGG | + | chr3_1:58601458-58601477 | None:intergenic | 30.0% | |
| !!! | GTGGAATTTTTTCAAGCTTT+CGG | + | chr3_1:58601582-58601601 | None:intergenic | 30.0% |
| !! | TAAGGAAGATTCTGAAATGA+AGG | - | chr3_1:58600501-58600520 | Msa0365010:CDS | 30.0% |
| !! | AAGGAAGATTCTGAAATGAA+GGG | - | chr3_1:58600502-58600521 | Msa0365010:CDS | 30.0% |
| ! | GCATCGAACTTATCATATTT+TGG | + | chr3_1:58600532-58600551 | None:intergenic | 30.0% |
| ! | GATACTGAATTTGAAGTCTT+TGG | + | chr3_1:58600569-58600588 | None:intergenic | 30.0% |
| AGAGAGCTCAATGTATTAAA+TGG | - | chr3_1:58600631-58600650 | Msa0365010:CDS | 30.0% | |
| TGTTAAATTTCAAGAGTTCC+AGG | - | chr3_1:58600809-58600828 | Msa0365010:intron | 30.0% | |
| TCAATCAAGAACCTAAAAAG+AGG | - | chr3_1:58600869-58600888 | Msa0365010:CDS | 30.0% | |
| CAATCAAGAACCTAAAAAGA+GGG | - | chr3_1:58600870-58600889 | Msa0365010:CDS | 30.0% | |
| !! | GCTAATGTGTTTGTTATATC+AGG | - | chr3_1:58600960-58600979 | Msa0365010:CDS | 30.0% |
| CAATGTTAAACCAAATGAAG+CGG | - | chr3_1:58601008-58601027 | Msa0365010:CDS | 30.0% | |
| CATAAGATGTTACATGGTAA+GGG | + | chr3_1:58601224-58601243 | None:intergenic | 30.0% | |
| ACATAAGATGTTACATGGTA+AGG | + | chr3_1:58601225-58601244 | None:intergenic | 30.0% | |
| GAAAAAAGTTACAAGAAGGT+TGG | - | chr3_1:58601343-58601362 | Msa0365010:intron | 30.0% | |
| TACAAGAAGGTTGGATTTAA+AGG | - | chr3_1:58601352-58601371 | Msa0365010:intron | 30.0% | |
| TAGTAATAGATTGAGAACCT+TGG | - | chr3_1:58601388-58601407 | Msa0365010:intron | 30.0% | |
| !!! | ACCATCATACACTTTTTTGA+AGG | + | chr3_1:58601414-58601433 | None:intergenic | 30.0% |
| TCATCATCGTTAATCACAAT+TGG | + | chr3_1:58601458-58601477 | None:intergenic | 30.0% | |
| !!! | GTGGAATTTTTTCAAGCTTT+CGG | + | chr3_1:58601582-58601601 | None:intergenic | 30.0% |
| CGAGAAGTTGTCAAATGAAT+TGG | - | chr3_1:58600468-58600487 | Msa0365010:CDS | 35.0% | |
| TGAATTGGACAATGCATCTA+AGG | - | chr3_1:58600483-58600502 | Msa0365010:CDS | 35.0% | |
| ! | CTTCAAATTCAGTATCGGAA+TGG | - | chr3_1:58600573-58600592 | Msa0365010:CDS | 35.0% |
| TACTTCTCGACACCAATTTA+AGG | - | chr3_1:58600600-58600619 | Msa0365010:CDS | 35.0% | |
| ! | AGACTAATACATTTAGGGTG+AGG | - | chr3_1:58600755-58600774 | Msa0365010:intron | 35.0% |
| ACCATTCCACAAGTATGTAT+CGG | + | chr3_1:58600790-58600809 | None:intergenic | 35.0% | |
| ! | TTGCTTAGAGTATTTCCCTT+AGG | + | chr3_1:58600991-58601010 | None:intergenic | 35.0% |
| !! | AACTAGAAGTGCTTGTTGAT+GGG | - | chr3_1:58601091-58601110 | Msa0365010:intron | 35.0% |
| GACTCACATAAGATGTTACA+TGG | + | chr3_1:58601230-58601249 | None:intergenic | 35.0% | |
| TTTCCTACAATATCCAAGAG+AGG | + | chr3_1:58601313-58601332 | None:intergenic | 35.0% | |
| AAGAAGGTTGGATTTAAAGG+TGG | - | chr3_1:58601355-58601374 | Msa0365010:intron | 35.0% | |
| !!! | ATACACTTTTTTGAAGGCCA+AGG | + | chr3_1:58601408-58601427 | None:intergenic | 35.0% |
| ! | GCCTTCAAAAAAGTGTATGA+TGG | - | chr3_1:58601410-58601429 | Msa0365010:CDS | 35.0% |
| ! | AAAAAAGTGTATGATGGTCC+TGG | - | chr3_1:58601416-58601435 | Msa0365010:CDS | 35.0% |
| ! | AAAAAGTGTATGATGGTCCT+GGG | - | chr3_1:58601417-58601436 | Msa0365010:CDS | 35.0% |
| ATCGTTAATCACAATTGGAC+TGG | + | chr3_1:58601453-58601472 | None:intergenic | 35.0% | |
| ! | TGATGATGATGATGATGATG+AGG | - | chr3_1:58601472-58601491 | Msa0365010:CDS | 35.0% |
| GAGTTAAATGATCCGAAAGT+TGG | - | chr3_1:58601518-58601537 | Msa0365010:CDS | 35.0% | |
| AATTCCATCCCAACTTCTTA+AGG | + | chr3_1:58601558-58601577 | None:intergenic | 35.0% | |
| CGAGAAGTTGTCAAATGAAT+TGG | - | chr3_1:58600468-58600487 | Msa0365010:CDS | 35.0% | |
| TGAATTGGACAATGCATCTA+AGG | - | chr3_1:58600483-58600502 | Msa0365010:CDS | 35.0% | |
| ! | CTTCAAATTCAGTATCGGAA+TGG | - | chr3_1:58600573-58600592 | Msa0365010:CDS | 35.0% |
| TACTTCTCGACACCAATTTA+AGG | - | chr3_1:58600600-58600619 | Msa0365010:CDS | 35.0% | |
| ! | AGACTAATACATTTAGGGTG+AGG | - | chr3_1:58600755-58600774 | Msa0365010:intron | 35.0% |
| ACCATTCCACAAGTATGTAT+CGG | + | chr3_1:58600790-58600809 | None:intergenic | 35.0% | |
| ! | TTGCTTAGAGTATTTCCCTT+AGG | + | chr3_1:58600991-58601010 | None:intergenic | 35.0% |
| !! | AACTAGAAGTGCTTGTTGAT+GGG | - | chr3_1:58601091-58601110 | Msa0365010:intron | 35.0% |
| GACTCACATAAGATGTTACA+TGG | + | chr3_1:58601230-58601249 | None:intergenic | 35.0% | |
| TTTCCTACAATATCCAAGAG+AGG | + | chr3_1:58601313-58601332 | None:intergenic | 35.0% | |
| AAGAAGGTTGGATTTAAAGG+TGG | - | chr3_1:58601355-58601374 | Msa0365010:intron | 35.0% | |
| !!! | ATACACTTTTTTGAAGGCCA+AGG | + | chr3_1:58601408-58601427 | None:intergenic | 35.0% |
| ! | GCCTTCAAAAAAGTGTATGA+TGG | - | chr3_1:58601410-58601429 | Msa0365010:CDS | 35.0% |
| ! | AAAAAAGTGTATGATGGTCC+TGG | - | chr3_1:58601416-58601435 | Msa0365010:CDS | 35.0% |
| ! | AAAAAGTGTATGATGGTCCT+GGG | - | chr3_1:58601417-58601436 | Msa0365010:CDS | 35.0% |
| ATCGTTAATCACAATTGGAC+TGG | + | chr3_1:58601453-58601472 | None:intergenic | 35.0% | |
| ! | TGATGATGATGATGATGATG+AGG | - | chr3_1:58601472-58601491 | Msa0365010:CDS | 35.0% |
| GAGTTAAATGATCCGAAAGT+TGG | - | chr3_1:58601518-58601537 | Msa0365010:CDS | 35.0% | |
| AATTCCATCCCAACTTCTTA+AGG | + | chr3_1:58601558-58601577 | None:intergenic | 35.0% | |
| ! | ATACTAAGAAGCACAGTGTG+TGG | - | chr3_1:58600436-58600455 | Msa0365010:CDS | 40.0% |
| CTCTTACAGCGTCCTTAAAT+TGG | + | chr3_1:58600615-58600634 | None:intergenic | 40.0% | |
| ! | AACTCTCTTTTTGCCATTCC+TGG | + | chr3_1:58600674-58600693 | None:intergenic | 40.0% |
| AGAGAGTTAGAGCTGTTTGT+TGG | - | chr3_1:58600686-58600705 | Msa0365010:CDS | 40.0% | |
| CTACATCCGATACATACTTG+TGG | - | chr3_1:58600781-58600800 | Msa0365010:intron | 40.0% | |
| TCCGATACATACTTGTGGAA+TGG | - | chr3_1:58600786-58600805 | Msa0365010:intron | 40.0% | |
| !! | TTCCAGGTCTAAGTGGATTA+AGG | - | chr3_1:58600825-58600844 | Msa0365010:CDS | 40.0% |
| TTCCTTAATCCACTTAGACC+TGG | + | chr3_1:58600830-58600849 | None:intergenic | 40.0% | |
| !! | TGTGTTTGTTATATCAGGGG+AGG | - | chr3_1:58600965-58600984 | Msa0365010:CDS | 40.0% |
| ! | TTTCTCTTTGCCGCTTCATT+TGG | + | chr3_1:58601021-58601040 | None:intergenic | 40.0% |
| !! | CAACTAGAAGTGCTTGTTGA+TGG | - | chr3_1:58601090-58601109 | Msa0365010:intron | 40.0% |
| !! | ACTAGAAGTGCTTGTTGATG+GGG | - | chr3_1:58601092-58601111 | Msa0365010:intron | 40.0% |
| ! | ACTTCTTGATTCTGGTTGAG+AGG | + | chr3_1:58601120-58601139 | None:intergenic | 40.0% |
| TTTCGCCAACATATCGTCAT+CGG | + | chr3_1:58601148-58601167 | None:intergenic | 40.0% | |
| ACAAGGTTCACTGCAGAAAT+CGG | + | chr3_1:58601186-58601205 | None:intergenic | 40.0% | |
| TGCATGCAACTTCCAACTTT+CGG | + | chr3_1:58601533-58601552 | None:intergenic | 40.0% | |
| CATGCATGCCTTAAGAAGTT+GGG | - | chr3_1:58601547-58601566 | Msa0365010:CDS | 40.0% | |
| ! | ATACTAAGAAGCACAGTGTG+TGG | - | chr3_1:58600436-58600455 | Msa0365010:CDS | 40.0% |
| CTCTTACAGCGTCCTTAAAT+TGG | + | chr3_1:58600615-58600634 | None:intergenic | 40.0% | |
| ! | AACTCTCTTTTTGCCATTCC+TGG | + | chr3_1:58600674-58600693 | None:intergenic | 40.0% |
| AGAGAGTTAGAGCTGTTTGT+TGG | - | chr3_1:58600686-58600705 | Msa0365010:CDS | 40.0% | |
| CTACATCCGATACATACTTG+TGG | - | chr3_1:58600781-58600800 | Msa0365010:intron | 40.0% | |
| TCCGATACATACTTGTGGAA+TGG | - | chr3_1:58600786-58600805 | Msa0365010:intron | 40.0% | |
| !! | TTCCAGGTCTAAGTGGATTA+AGG | - | chr3_1:58600825-58600844 | Msa0365010:CDS | 40.0% |
| TTCCTTAATCCACTTAGACC+TGG | + | chr3_1:58600830-58600849 | None:intergenic | 40.0% | |
| !! | TGTGTTTGTTATATCAGGGG+AGG | - | chr3_1:58600965-58600984 | Msa0365010:CDS | 40.0% |
| ! | TTTCTCTTTGCCGCTTCATT+TGG | + | chr3_1:58601021-58601040 | None:intergenic | 40.0% |
| !! | CAACTAGAAGTGCTTGTTGA+TGG | - | chr3_1:58601090-58601109 | Msa0365010:intron | 40.0% |
| !! | ACTAGAAGTGCTTGTTGATG+GGG | - | chr3_1:58601092-58601111 | Msa0365010:intron | 40.0% |
| ! | ACTTCTTGATTCTGGTTGAG+AGG | + | chr3_1:58601120-58601139 | None:intergenic | 40.0% |
| TTTCGCCAACATATCGTCAT+CGG | + | chr3_1:58601148-58601167 | None:intergenic | 40.0% | |
| ACAAGGTTCACTGCAGAAAT+CGG | + | chr3_1:58601186-58601205 | None:intergenic | 40.0% | |
| TGCATGCAACTTCCAACTTT+CGG | + | chr3_1:58601533-58601552 | None:intergenic | 40.0% | |
| CATGCATGCCTTAAGAAGTT+GGG | - | chr3_1:58601547-58601566 | Msa0365010:CDS | 40.0% | |
| ! | AAGAAGCACAGTGTGTGGAA+TGG | - | chr3_1:58600441-58600460 | Msa0365010:CDS | 45.0% |
| TCAAGAGTTCCAGGTCTAAG+TGG | - | chr3_1:58600818-58600837 | Msa0365010:CDS | 45.0% | |
| TTATATCAGGGGAGGCCTAA+GGG | - | chr3_1:58600973-58600992 | Msa0365010:CDS | 45.0% | |
| CGGCAGATACTTCTTGATTC+TGG | + | chr3_1:58601128-58601147 | None:intergenic | 45.0% | |
| ATCTGCCGATGACGATATGT+TGG | - | chr3_1:58601140-58601159 | Msa0365010:intron | 45.0% | |
| TTATGTAACGCCACCTCTCT+TGG | - | chr3_1:58601297-58601316 | Msa0365010:CDS | 45.0% | |
| CCTACAATATCCAAGAGAGG+TGG | + | chr3_1:58601310-58601329 | None:intergenic | 45.0% | |
| CCACCTCTCTTGGATATTGT+AGG | - | chr3_1:58601307-58601326 | Msa0365010:CDS | 45.0% | |
| GGTTGGATTTAAAGGTGGTG+AGG | - | chr3_1:58601360-58601379 | Msa0365010:intron | 45.0% | |
| TGGATTTAAAGGTGGTGAGG+AGG | - | chr3_1:58601363-58601382 | Msa0365010:intron | 45.0% | |
| ! | TGATGATGATGATGAGGACG+AGG | - | chr3_1:58601478-58601497 | Msa0365010:CDS | 45.0% |
| GCATGCATGCCTTAAGAAGT+TGG | - | chr3_1:58601546-58601565 | Msa0365010:CDS | 45.0% | |
| CATGCCTTAAGAAGTTGGGA+TGG | - | chr3_1:58601551-58601570 | Msa0365010:CDS | 45.0% | |
| ! | AAGAAGCACAGTGTGTGGAA+TGG | - | chr3_1:58600441-58600460 | Msa0365010:CDS | 45.0% |
| TCAAGAGTTCCAGGTCTAAG+TGG | - | chr3_1:58600818-58600837 | Msa0365010:CDS | 45.0% | |
| TTATATCAGGGGAGGCCTAA+GGG | - | chr3_1:58600973-58600992 | Msa0365010:CDS | 45.0% | |
| CGGCAGATACTTCTTGATTC+TGG | + | chr3_1:58601128-58601147 | None:intergenic | 45.0% | |
| ATCTGCCGATGACGATATGT+TGG | - | chr3_1:58601140-58601159 | Msa0365010:intron | 45.0% | |
| TTATGTAACGCCACCTCTCT+TGG | - | chr3_1:58601297-58601316 | Msa0365010:CDS | 45.0% | |
| CCTACAATATCCAAGAGAGG+TGG | + | chr3_1:58601310-58601329 | None:intergenic | 45.0% | |
| CCACCTCTCTTGGATATTGT+AGG | - | chr3_1:58601307-58601326 | Msa0365010:CDS | 45.0% | |
| GGTTGGATTTAAAGGTGGTG+AGG | - | chr3_1:58601360-58601379 | Msa0365010:intron | 45.0% | |
| TGGATTTAAAGGTGGTGAGG+AGG | - | chr3_1:58601363-58601382 | Msa0365010:intron | 45.0% | |
| ! | TGATGATGATGATGAGGACG+AGG | - | chr3_1:58601478-58601497 | Msa0365010:CDS | 45.0% |
| GCATGCATGCCTTAAGAAGT+TGG | - | chr3_1:58601546-58601565 | Msa0365010:CDS | 45.0% | |
| CATGCCTTAAGAAGTTGGGA+TGG | - | chr3_1:58601551-58601570 | Msa0365010:CDS | 45.0% | |
| GTTATATCAGGGGAGGCCTA+AGG | - | chr3_1:58600972-58600991 | Msa0365010:CDS | 50.0% | |
| GGTCAGCAGTTGTTGGTACA+AGG | + | chr3_1:58601203-58601222 | None:intergenic | 50.0% | |
| TGGTAAGGGTCAGCAGTTGT+TGG | + | chr3_1:58601210-58601229 | None:intergenic | 50.0% | |
| ! | TGATGATGATGAGGACGAGG+AGG | - | chr3_1:58601481-58601500 | Msa0365010:CDS | 50.0% |
| GTTATATCAGGGGAGGCCTA+AGG | - | chr3_1:58600972-58600991 | Msa0365010:CDS | 50.0% | |
| GGTCAGCAGTTGTTGGTACA+AGG | + | chr3_1:58601203-58601222 | None:intergenic | 50.0% | |
| TGGTAAGGGTCAGCAGTTGT+TGG | + | chr3_1:58601210-58601229 | None:intergenic | 50.0% | |
| ! | TGATGATGATGAGGACGAGG+AGG | - | chr3_1:58601481-58601500 | Msa0365010:CDS | 50.0% |
| ! | TGATGATGAGGACGAGGAGG+AGG | - | chr3_1:58601484-58601503 | Msa0365010:CDS | 55.0% |
| ! | TGATGATGAGGACGAGGAGG+AGG | - | chr3_1:58601484-58601503 | Msa0365010:CDS | 55.0% |
| TGATGAGGACGAGGAGGAGG+AGG | - | chr3_1:58601487-58601506 | Msa0365010:CDS | 60.0% | |
| TGATGAGGACGAGGAGGAGG+AGG | - | chr3_1:58601487-58601506 | Msa0365010:CDS | 60.0% | |
| !! | GGACTGGCTGCATCTCTCCC+AGG | + | chr3_1:58601437-58601456 | None:intergenic | 65.0% |
| TGAGGACGAGGAGGAGGAGG+AGG | - | chr3_1:58601490-58601509 | Msa0365010:CDS | 65.0% | |
| !! | GGACTGGCTGCATCTCTCCC+AGG | + | chr3_1:58601437-58601456 | None:intergenic | 65.0% |
| TGAGGACGAGGAGGAGGAGG+AGG | - | chr3_1:58601490-58601509 | Msa0365010:CDS | 65.0% | |
| GGACGAGGAGGAGGAGGAGG+AGG | - | chr3_1:58601493-58601512 | Msa0365010:CDS | 70.0% | |
| CGAGGAGGAGGAGGAGGAGG+AGG | - | chr3_1:58601496-58601515 | Msa0365010:CDS | 70.0% | |
| GGACGAGGAGGAGGAGGAGG+AGG | - | chr3_1:58601493-58601512 | Msa0365010:CDS | 70.0% | |
| CGAGGAGGAGGAGGAGGAGG+AGG | - | chr3_1:58601496-58601515 | Msa0365010:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 58600425 | 58601616 | 58600425 | ID=Msa0365010;Name=Msa0365010 |
| chr3_1 | mRNA | 58600425 | 58601616 | 58600425 | ID=Msa0365010-mRNA-1;Parent=Msa0365010;Name=Msa0365010-mRNA-1;_AED=0.23;_eAED=0.47;_QI=8|0.33|0|1|0.66|0.25|4|0|317 |
| chr3_1 | exon | 58601399 | 58601616 | 58601399 | ID=Msa0365010-mRNA-1:exon:11152;Parent=Msa0365010-mRNA-1 |
| chr3_1 | exon | 58601150 | 58601353 | 58601150 | ID=Msa0365010-mRNA-1:exon:11151;Parent=Msa0365010-mRNA-1 |
| chr3_1 | exon | 58600811 | 58601059 | 58600811 | ID=Msa0365010-mRNA-1:exon:11150;Parent=Msa0365010-mRNA-1 |
| chr3_1 | exon | 58600425 | 58600712 | 58600425 | ID=Msa0365010-mRNA-1:exon:11149;Parent=Msa0365010-mRNA-1 |
| chr3_1 | five_prime_UTR | 58601609 | 58601616 | 58601609 | ID=Msa0365010-mRNA-1:five_prime_utr;Parent=Msa0365010-mRNA-1 |
| chr3_1 | CDS | 58601399 | 58601608 | 58601399 | ID=Msa0365010-mRNA-1:cds;Parent=Msa0365010-mRNA-1 |
| chr3_1 | CDS | 58601150 | 58601353 | 58601150 | ID=Msa0365010-mRNA-1:cds;Parent=Msa0365010-mRNA-1 |
| chr3_1 | CDS | 58600811 | 58601059 | 58600811 | ID=Msa0365010-mRNA-1:cds;Parent=Msa0365010-mRNA-1 |
| chr3_1 | CDS | 58600425 | 58600712 | 58600425 | ID=Msa0365010-mRNA-1:cds;Parent=Msa0365010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
