Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816150 | XP_024639157.1 | 60.482 | 539 | 138 | 8 | 15 | 484 | 3 | 535 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816150 | G7K4M4 | 59.853 | 543 | 139 | 8 | 15 | 484 | 3 | 539 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0816150 | 0.831731 | 1.413913e-55 | -8.615850e-47 |
| Msa0017510 | Msa0816150 | 0.853059 | 3.069568e-61 | -8.615850e-47 |
| Msa0024550 | Msa0816150 | 0.843604 | 1.265204e-58 | -8.615850e-47 |
| Msa0028640 | Msa0816150 | 0.810874 | 9.276812e-51 | -8.615850e-47 |
| Msa0055450 | Msa0816150 | 0.811295 | 7.520411e-51 | -8.615850e-47 |
| Msa0076250 | Msa0816150 | 0.834699 | 2.577569e-56 | -8.615850e-47 |
| Msa0089630 | Msa0816150 | 0.803182 | 3.938538e-49 | -8.615850e-47 |
| Msa0110970 | Msa0816150 | 0.807399 | 5.152255e-50 | -8.615850e-47 |
| Msa0112570 | Msa0816150 | 0.812932 | 3.305721e-51 | -8.615850e-47 |
| Msa0120400 | Msa0816150 | 0.834781 | 2.457130e-56 | -8.615850e-47 |
| Msa0657970 | Msa0816150 | 0.824932 | 6.172676e-54 | -8.615850e-47 |
| Msa0669320 | Msa0816150 | 0.806737 | 7.111885e-50 | -8.615850e-47 |
| Msa0682050 | Msa0816150 | 0.811497 | 6.795761e-51 | -8.615850e-47 |
| Msa0682620 | Msa0816150 | 0.812747 | 3.628376e-51 | -8.615850e-47 |
| Msa0688770 | Msa0816150 | 0.808320 | 3.282388e-50 | -8.615850e-47 |
| Msa0722850 | Msa0816150 | 0.800153 | 1.646886e-48 | -8.615850e-47 |
| Msa0743890 | Msa0816150 | 0.892072 | 2.223494e-74 | -8.615850e-47 |
| Msa0769180 | Msa0816150 | 0.817746 | 2.811027e-52 | -8.615850e-47 |
| Msa0785250 | Msa0816150 | 0.808367 | 3.207399e-50 | -8.615850e-47 |
| Msa0786500 | Msa0816150 | 0.843682 | 1.205686e-58 | -8.615850e-47 |
| Msa0789830 | Msa0816150 | 0.805274 | 1.444591e-49 | -8.615850e-47 |
| Msa0816150 | Msa0822870 | 0.824771 | 6.738298e-54 | -8.615850e-47 |
| Msa0816150 | Msa0824840 | 0.974766 | 9.740547e-139 | -8.615850e-47 |
| Msa0816150 | Msa0828560 | 0.813039 | 3.130862e-51 | -8.615850e-47 |
| Msa0816150 | Msa0843220 | 0.805057 | 1.603748e-49 | -8.615850e-47 |
| Msa0816150 | Msa0870640 | 0.809684 | 1.675209e-50 | -8.615850e-47 |
| Msa0816150 | Msa0876550 | 0.808113 | 3.631915e-50 | -8.615850e-47 |
| Msa0816150 | Msa0880140 | 0.848901 | 4.560931e-60 | -8.615850e-47 |
| Msa0816150 | Msa0890320 | 0.851220 | 1.022933e-60 | -8.615850e-47 |
| Msa0816150 | Msa0909120 | 0.847911 | 8.568430e-60 | -8.615850e-47 |
| Msa0816150 | Msa0909140 | 0.824394 | 8.267246e-54 | -8.615850e-47 |
| Msa0816150 | Msa0936220 | 0.801097 | 1.057209e-48 | -8.615850e-47 |
| Msa0816150 | Msa0948290 | 0.800320 | 1.523540e-48 | -8.615850e-47 |
| Msa0816150 | Msa0964840 | 0.839256 | 1.766726e-57 | -8.615850e-47 |
| Msa0816150 | Msa0967380 | 0.832323 | 1.009476e-55 | -8.615850e-47 |
| Msa0816150 | Msa1019000 | 0.802126 | 6.504015e-49 | -8.615850e-47 |
| Msa0816150 | Msa1019430 | 0.813961 | 1.963160e-51 | -8.615850e-47 |
| Msa0816150 | Msa1019470 | 0.809837 | 1.553520e-50 | -8.615850e-47 |
| Msa0816150 | Msa1024240 | 0.805360 | 1.385867e-49 | -8.615850e-47 |
| Msa0816150 | Msa1070000 | 0.804291 | 2.318220e-49 | -8.615850e-47 |
| Msa0816150 | Msa1085200 | 0.803156 | 3.988115e-49 | -8.615850e-47 |
| Msa0816150 | Msa1151910 | 0.800748 | 1.246163e-48 | -8.615850e-47 |
| Msa0816150 | Msa1209460 | 0.805110 | 1.563792e-49 | -8.615850e-47 |
| Msa0816150 | Msa1228190 | 0.801355 | 9.363457e-49 | -8.615850e-47 |
| Msa0816150 | Msa1283860 | 0.818771 | 1.647240e-52 | -8.615850e-47 |
| Msa0816150 | Msa1366340 | 0.819614 | 1.058746e-52 | -8.615850e-47 |
| Msa0816150 | Msa1372760 | 0.804116 | 2.521353e-49 | -8.615850e-47 |
| Msa0816150 | Msa1374550 | 0.837927 | 3.892357e-57 | -8.615850e-47 |
| Msa0816150 | Msa1438250 | 0.858700 | 6.882323e-63 | -8.615850e-47 |
| Msa0124130 | Msa0816150 | 0.800672 | 1.291463e-48 | -8.615850e-47 |
| Msa0124280 | Msa0816150 | 0.802247 | 6.140936e-49 | -8.615850e-47 |
| Msa0139060 | Msa0816150 | 0.909076 | 8.495613e-82 | -8.615850e-47 |
| Msa0157290 | Msa0816150 | 0.853857 | 1.810291e-61 | -8.615850e-47 |
| Msa0164330 | Msa0816150 | 0.819739 | 9.913133e-53 | -8.615850e-47 |
| Msa0166560 | Msa0816150 | 0.800241 | 1.580652e-48 | -8.615850e-47 |
| Msa0168650 | Msa0816150 | 0.815567 | 8.651461e-52 | -8.615850e-47 |
| Msa0200260 | Msa0816150 | 0.819522 | 1.111029e-52 | -8.615850e-47 |
| Msa0202950 | Msa0816150 | 0.802319 | 5.936761e-49 | -8.615850e-47 |
| Msa0220740 | Msa0816150 | 0.800279 | 1.552617e-48 | -8.615850e-47 |
| Msa0221290 | Msa0816150 | 0.807433 | 5.066464e-50 | -8.615850e-47 |
| Msa0224780 | Msa0816150 | 0.800950 | 1.133077e-48 | -8.615850e-47 |
| Msa0230740 | Msa0816150 | 0.832118 | 1.134679e-55 | -8.615850e-47 |
| Msa0365010 | Msa0816150 | 0.800904 | 1.157952e-48 | -8.615850e-47 |
| Msa0376350 | Msa0816150 | 0.800164 | 1.638365e-48 | -8.615850e-47 |
| Msa0392420 | Msa0816150 | 0.808576 | 2.894088e-50 | -8.615850e-47 |
| Msa0392460 | Msa0816150 | 0.801634 | 8.208136e-49 | -8.615850e-47 |
| Msa0392490 | Msa0816150 | 0.802010 | 6.871853e-49 | -8.615850e-47 |
| Msa0392510 | Msa0816150 | 0.819626 | 1.052329e-52 | -8.615850e-47 |
| Msa0406120 | Msa0816150 | 0.808171 | 3.530735e-50 | -8.615850e-47 |
| Msa0410650 | Msa0816150 | 0.802846 | 4.622627e-49 | -8.615850e-47 |
| Msa0415320 | Msa0816150 | 0.807620 | 4.623802e-50 | -8.615850e-47 |
| Msa0424790 | Msa0816150 | 0.802254 | 6.122356e-49 | -8.615850e-47 |
| Msa0440750 | Msa0816150 | 0.801928 | 7.143644e-49 | -8.615850e-47 |
| Msa0243100 | Msa0816150 | 0.819444 | 1.158027e-52 | -8.615850e-47 |
| Msa0261340 | Msa0816150 | 0.822134 | 2.786732e-53 | -8.615850e-47 |
| Msa0284420 | Msa0816150 | 0.809502 | 1.833168e-50 | -8.615850e-47 |
| Msa0287650 | Msa0816150 | 0.807600 | 4.669982e-50 | -8.615850e-47 |
| Msa0357340 | Msa0816150 | 0.839472 | 1.552281e-57 | -8.615850e-47 |
| Msa0487570 | Msa0816150 | 0.813341 | 2.688735e-51 | -8.615850e-47 |
| Msa0487630 | Msa0816150 | 0.813930 | 1.994997e-51 | -8.615850e-47 |
| Msa0535040 | Msa0816150 | 0.805995 | 1.019689e-49 | -8.615850e-47 |
| Msa0591790 | Msa0816150 | 0.805477 | 1.310116e-49 | -8.615850e-47 |
| Msa0600700 | Msa0816150 | 0.811045 | 8.518655e-51 | -8.615850e-47 |
| Msa0602240 | Msa0816150 | 0.821057 | 4.942257e-53 | -8.615850e-47 |
| Msa0602250 | Msa0816150 | 0.820206 | 7.753462e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816150 | MtrunA17_Chr5g0446191 | 59.586 | 532 | 136 | 8 | 26 | 484 | 20 | 545 | 0.0 | 577 |
| Msa0816150 | MtrunA17_Chr5g0446231 | 52.110 | 545 | 171 | 14 | 22 | 484 | 1 | 537 | 1.25e-167 | 484 |
| Msa0816150 | MtrunA17_Chr5g0446171 | 70.139 | 144 | 34 | 2 | 1 | 135 | 1 | 144 | 3.19e-58 | 192 |
| Msa0816150 | MtrunA17_Chr5g0413371 | 66.667 | 108 | 36 | 0 | 18 | 125 | 2 | 109 | 3.84e-37 | 144 |
| Msa0816150 | MtrunA17_Chr4g0012551 | 33.835 | 266 | 141 | 10 | 211 | 463 | 1 | 244 | 1.44e-31 | 122 |
| Msa0816150 | MtrunA17_Chr5g0445881 | 40.741 | 162 | 67 | 5 | 1 | 134 | 1 | 161 | 2.54e-21 | 96.7 |
| Msa0816150 | MtrunA17_Chr5g0445831 | 41.250 | 160 | 69 | 4 | 1 | 136 | 1 | 159 | 4.12e-21 | 95.5 |
| Msa0816150 | MtrunA17_Chr5g0445771 | 42.581 | 155 | 63 | 3 | 4 | 135 | 2 | 153 | 4.62e-21 | 95.9 |
| Msa0816150 | MtrunA17_Chr6g0462331 | 26.689 | 296 | 184 | 9 | 213 | 485 | 8 | 293 | 7.37e-21 | 95.1 |
| Msa0816150 | MtrunA17_Chr5g0445861 | 39.130 | 184 | 60 | 8 | 1 | 135 | 1 | 181 | 9.54e-20 | 91.7 |
| Msa0816150 | MtrunA17_Chr6g0477621 | 36.667 | 150 | 86 | 3 | 313 | 459 | 11 | 154 | 3.82e-19 | 87.4 |
| Msa0816150 | MtrunA17_Chr3g0085601 | 28.426 | 197 | 122 | 6 | 289 | 479 | 2 | 185 | 2.22e-17 | 82.8 |
| Msa0816150 | MtrunA17_Chr1g0174681 | 35.185 | 108 | 63 | 2 | 356 | 463 | 11 | 111 | 1.15e-16 | 80.1 |
| Msa0816150 | MtrunA17_Chr7g0226131 | 26.778 | 239 | 151 | 9 | 208 | 433 | 6 | 233 | 2.12e-15 | 75.5 |
| Msa0816150 | MtrunA17_Chr5g0416551 | 28.652 | 178 | 112 | 5 | 286 | 459 | 1 | 167 | 1.20e-13 | 70.1 |
| Msa0816150 | MtrunA17_Chr1g0202531 | 27.465 | 284 | 175 | 10 | 215 | 474 | 26 | 302 | 9.36e-12 | 67.0 |
| Msa0816150 | MtrunA17_Chr7g0215391 | 27.160 | 243 | 149 | 7 | 215 | 436 | 19 | 254 | 3.07e-11 | 65.5 |
| Msa0816150 | MtrunA17_Chr1g0194781 | 27.160 | 243 | 149 | 7 | 215 | 436 | 19 | 254 | 3.07e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 114 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACAACCCAGGTTCGATTT+TGG | 0.201779 | 5_3:+50209283 | None:intergenic |
| GTTCTTTGCAAATGCATATC+TGG | 0.205513 | 5_3:-50206300 | Msa0816150:CDS |
| AGAGCACTATTCGAAGTTTC+TGG | 0.226886 | 5_3:-50206461 | Msa0816150:CDS |
| AAAATTATCAATGGATTGTT+TGG | 0.246344 | 5_3:-50206191 | Msa0816150:CDS |
| TTATAGTTCCCATCTTCTTT+AGG | 0.261328 | 5_3:+50206272 | None:intergenic |
| TTATGTCATTTAAGTTATAA+TGG | 0.279777 | 5_3:+50205707 | None:intergenic |
| AGGGTTGGGGTTGCCCATTT+TGG | 0.308578 | 5_3:-50207850 | Msa0816150:CDS |
| GTACAAATTCTCAGATATTC+AGG | 0.317285 | 5_3:-50206396 | Msa0816150:CDS |
| CATTGACTGGTTCGCCCTTA+AGG | 0.319854 | 5_3:+50205910 | None:intergenic |
| TAGAGGGTTCACGTCCAAAA+TGG | 0.327794 | 5_3:+50207836 | None:intergenic |
| CTTCCTAACCCAATCGGCCT+CGG | 0.330220 | 5_3:+50206076 | None:intergenic |
| CTTGATAACTGCAATCCTTA+AGG | 0.357132 | 5_3:-50205925 | Msa0816150:CDS |
| GTTTCCTAGCAAATGACCTT+CGG | 0.361574 | 5_3:-50205881 | Msa0816150:CDS |
| AAGAAAGAAGAATAATGAAT+TGG | 0.367091 | 5_3:-50208946 | Msa0816150:CDS |
| CTTGGAAGACATGAGCATTC+AGG | 0.367632 | 5_3:-50209243 | Msa0816150:CDS |
| ATGCTTTAGCAGTGGGTGTC+AGG | 0.376463 | 5_3:+50206018 | None:intergenic |
| GTGCAGGCCCGAGGCCGATT+GGG | 0.381424 | 5_3:-50206084 | Msa0816150:CDS |
| TGTGCAGGCCCGAGGCCGAT+TGG | 0.385248 | 5_3:-50206085 | Msa0816150:CDS |
| GAGCATTCAGGAACTTGTTT+CGG | 0.395229 | 5_3:-50209231 | Msa0816150:CDS |
| CCTCTATTACCTCTTTATGT+AGG | 0.400563 | 5_3:-50207819 | Msa0816150:CDS |
| AAATTATCAATGGATTGTTT+GGG | 0.400666 | 5_3:-50206190 | Msa0816150:CDS |
| TTGATAACTGCAATCCTTAA+GGG | 0.407477 | 5_3:-50205924 | Msa0816150:CDS |
| GGGATCTAACATTGATCATC+AGG | 0.407482 | 5_3:-50206123 | Msa0816150:CDS |
| CGGTGTCGCGTACAGCGTTT+CGG | 0.412285 | 5_3:-50209211 | Msa0816150:CDS |
| TCTATCCATTTCACGGTGAC+TGG | 0.412297 | 5_3:+50205738 | None:intergenic |
| TTCACGGTGACTGGTCTAGA+TGG | 0.418534 | 5_3:+50205747 | None:intergenic |
| CTAGACCAGTCACCGTGAAA+TGG | 0.419439 | 5_3:-50205743 | Msa0816150:CDS |
| ATCTTTCTTCCTAACCCAAT+CGG | 0.420963 | 5_3:+50206070 | None:intergenic |
| ACAGTTTGATGAACTTGAAA+AGG | 0.422370 | 5_3:-50209183 | Msa0816150:CDS |
| AAGAAAACTAGTTTAGTTGA+AGG | 0.432212 | 5_3:-50208987 | Msa0816150:CDS |
| CTTAAGGATTGCAGTTATCA+AGG | 0.437445 | 5_3:+50205926 | None:intergenic |
| TTTCCTAGCAAATGACCTTC+GGG | 0.437545 | 5_3:-50205880 | Msa0816150:CDS |
| GGCCCGAGGCCGATTGGGTT+AGG | 0.439711 | 5_3:-50206079 | Msa0816150:CDS |
| AGGAAACGGCCGACATTGAC+TGG | 0.441613 | 5_3:+50205897 | None:intergenic |
| TTTCATGAGAAAATTATCAA+TGG | 0.445312 | 5_3:-50206200 | Msa0816150:CDS |
| ATGATCAATGTTAGATCCCT+TGG | 0.447829 | 5_3:+50206127 | None:intergenic |
| TTCCTAACCCAATCGGCCTC+GGG | 0.448443 | 5_3:+50206077 | None:intergenic |
| CTGGGTCCTCCTAAAGAAGA+TGG | 0.457044 | 5_3:-50206281 | Msa0816150:CDS |
| ACTTCGAATAGTGCTCTTGA+TGG | 0.457825 | 5_3:+50206467 | None:intergenic |
| GAACTAAAAGAGCTAGGGTT+GGG | 0.458419 | 5_3:-50207864 | Msa0816150:CDS |
| AGAGGGTTCACGTCCAAAAT+GGG | 0.465355 | 5_3:+50207837 | None:intergenic |
| GAAGAATAATGAATTGGAGT+TGG | 0.472786 | 5_3:-50208940 | Msa0816150:CDS |
| CCTACATAAAGAGGTAATAG+AGG | 0.474454 | 5_3:+50207819 | None:intergenic |
| TCTTGCCGCTCATCTACTAT+AGG | 0.475363 | 5_3:+50207775 | None:intergenic |
| TTAGTTGAAGGAGACATTGT+TGG | 0.478274 | 5_3:-50208975 | Msa0816150:CDS |
| ATGATAGTGACCAGAGGATG+GGG | 0.479141 | 5_3:-50206371 | Msa0816150:CDS |
| GTGTTCATTTGAAGCAAGAA+AGG | 0.479787 | 5_3:-50206150 | Msa0816150:CDS |
| CTCTATTACCTCTTTATGTA+GGG | 0.480394 | 5_3:-50207818 | Msa0816150:CDS |
| CATAAACCCAAAATCGAACC+TGG | 0.482521 | 5_3:-50209290 | Msa0816150:CDS |
| TTATCAAGGTTGCTTTCTGA+AGG | 0.485245 | 5_3:+50205940 | None:intergenic |
| TTCAAGCTGAAGAAGATTTG+AGG | 0.489086 | 5_3:-50209079 | Msa0816150:CDS |
| GATCAACAAGCTTTGTGAAA+GGG | 0.494192 | 5_3:-50205808 | Msa0816150:CDS |
| TTCTTTGCAAATGCATATCT+GGG | 0.497315 | 5_3:-50206299 | Msa0816150:CDS |
| CATCATACCTGCACGTCTGA+TGG | 0.501556 | 5_3:+50207694 | None:intergenic |
| TAGTTCCCATCTTCTTTAGG+AGG | 0.502708 | 5_3:+50206275 | None:intergenic |
| AATGATAGTGACCAGAGGAT+GGG | 0.506204 | 5_3:-50206372 | Msa0816150:CDS |
| AGAGAGGAGCTATGCGAAAG+AGG | 0.509036 | 5_3:-50209053 | Msa0816150:CDS |
| TCTGACAACATTTGCAAAAG+AGG | 0.509268 | 5_3:-50206345 | Msa0816150:CDS |
| GCTCAAGGTGAATCATCATC+TGG | 0.509285 | 5_3:-50208864 | Msa0816150:intron |
| GAGTAATTATGAAACATTGT+TGG | 0.513700 | 5_3:-50209018 | Msa0816150:CDS |
| TGCACGCTCCCTACATAAAG+AGG | 0.520005 | 5_3:+50207810 | None:intergenic |
| GAAGGTCATTTGCTAGGAAA+CGG | 0.522688 | 5_3:+50205883 | None:intergenic |
| AGCTATGCGAAAGAGGGAAA+AGG | 0.524969 | 5_3:-50209046 | Msa0816150:CDS |
| CGGCACGAACTAAAAGAGCT+AGG | 0.525867 | 5_3:-50207870 | Msa0816150:CDS |
| CAATGATAGTGACCAGAGGA+TGG | 0.529533 | 5_3:-50206373 | Msa0816150:CDS |
| ATCAAGGTTGCTTTCTGAAG+GGG | 0.531107 | 5_3:+50205942 | None:intergenic |
| AACTAAAAGAGCTAGGGTTG+GGG | 0.531167 | 5_3:-50207863 | Msa0816150:CDS |
| TGAGAAAGTTGAAGCGAAAG+TGG | 0.531948 | 5_3:-50208905 | Msa0816150:CDS |
| AACAGTTCGCTGCGGCCCGA+AGG | 0.532495 | 5_3:+50205865 | None:intergenic |
| ATTTGAAGCAAGAAAGGCCA+AGG | 0.533782 | 5_3:-50206144 | Msa0816150:CDS |
| GCTATGCGAAAGAGGGAAAA+GGG | 0.535225 | 5_3:-50209045 | Msa0816150:CDS |
| ACAAGCTTTGTGAAAGGGTG+AGG | 0.542004 | 5_3:-50205803 | Msa0816150:CDS |
| GCATGGTTTATGTAGCTTGT+GGG | 0.546630 | 5_3:+50205837 | None:intergenic |
| GAGAGGAGCTATGCGAAAGA+GGG | 0.553414 | 5_3:-50209052 | Msa0816150:CDS |
| CGGCCCGAAGGTCATTTGCT+AGG | 0.557590 | 5_3:+50205877 | None:intergenic |
| AGATTCTTAGTACTCTGTGC+AGG | 0.562380 | 5_3:-50206100 | Msa0816150:CDS |
| TGTCCCTCCATCAGACGTGC+AGG | 0.562640 | 5_3:-50207701 | Msa0816150:intron |
| TAATTATGAAACATTGTTGG+AGG | 0.563738 | 5_3:-50209015 | Msa0816150:CDS |
| TGATCAACAAGCTTTGTGAA+AGG | 0.564096 | 5_3:-50205809 | Msa0816150:CDS |
| TATCAAGGTTGCTTTCTGAA+GGG | 0.569374 | 5_3:+50205941 | None:intergenic |
| TAGTACTCTGTGCAGGCCCG+AGG | 0.571519 | 5_3:-50206093 | Msa0816150:CDS |
| GATTGGGTTAGGAAGAAAGA+TGG | 0.578358 | 5_3:-50206068 | Msa0816150:CDS |
| TGGGTCCTCCTAAAGAAGAT+GGG | 0.581164 | 5_3:-50206280 | Msa0816150:CDS |
| CACATTTGAACACGGAAGCA+AGG | 0.582698 | 5_3:+50205974 | None:intergenic |
| GACACCCACTGCTAAAGCAT+GGG | 0.585381 | 5_3:-50206015 | Msa0816150:CDS |
| TGACACCCACTGCTAAAGCA+TGG | 0.585774 | 5_3:-50206016 | Msa0816150:CDS |
| GATGTACCCTGAAAAGAATG+AGG | 0.588375 | 5_3:-50205781 | Msa0816150:CDS |
| CATACCTGCACGTCTGATGG+AGG | 0.590917 | 5_3:+50207697 | None:intergenic |
| CGAACTAAAAGAGCTAGGGT+TGG | 0.592003 | 5_3:-50207865 | Msa0816150:CDS |
| TGGTCATTCGAAGACAACCC+AGG | 0.592494 | 5_3:+50209272 | None:intergenic |
| CTACATAAAGAGGTAATAGA+GGG | 0.601936 | 5_3:+50207820 | None:intergenic |
| GGAACTAGATGAGACGTTGG+TGG | 0.604691 | 5_3:+50206519 | None:intergenic |
| GGCACGAACTAAAAGAGCTA+GGG | 0.614763 | 5_3:-50207869 | Msa0816150:CDS |
| GCTTGTTGATCAATGATGCA+TGG | 0.616686 | 5_3:+50205820 | None:intergenic |
| TGCATGGTTTATGTAGCTTG+TGG | 0.616762 | 5_3:+50205836 | None:intergenic |
| TGACAACGTTCATATCTCAC+AGG | 0.621939 | 5_3:-50207749 | Msa0816150:CDS |
| GTTGCCCATGCTTTAGCAGT+GGG | 0.624509 | 5_3:+50206011 | None:intergenic |
| AAAGTTGAAGCGAAAGTGGG+TGG | 0.629808 | 5_3:-50208901 | Msa0816150:CDS |
| GATAGTGACCAGAGGATGGG+GGG | 0.629982 | 5_3:-50206369 | Msa0816150:CDS |
| ATACCTGCACGTCTGATGGA+GGG | 0.632758 | 5_3:+50207698 | None:intergenic |
| GATGATAGCAATGCTGCTCA+AGG | 0.637953 | 5_3:-50208879 | Msa0816150:CDS |
| GAGAAAGTTGAAGCGAAAGT+GGG | 0.641583 | 5_3:-50208904 | Msa0816150:CDS |
| AGAAGATTTGAGGAAAAGAG+AGG | 0.642608 | 5_3:-50209069 | Msa0816150:CDS |
| TGATAGTGACCAGAGGATGG+GGG | 0.647620 | 5_3:-50206370 | Msa0816150:CDS |
| TGTTGCCCATGCTTTAGCAG+TGG | 0.654029 | 5_3:+50206010 | None:intergenic |
| TTTGAAGCAAGAAAGGCCAA+GGG | 0.664841 | 5_3:-50206143 | Msa0816150:CDS |
| AAGGGCGAACCAGTCAATGT+CGG | 0.669594 | 5_3:-50205906 | Msa0816150:CDS |
| ATAAACCCAAAATCGAACCT+GGG | 0.669846 | 5_3:-50209289 | Msa0816150:CDS |
| AAAGGAACTAGATGAGACGT+TGG | 0.686332 | 5_3:+50206516 | None:intergenic |
| AAGTCTGACACATTTGAACA+CGG | 0.704591 | 5_3:+50205966 | None:intergenic |
| CAACGTTCATATCTCACAGG+AGG | 0.705255 | 5_3:-50207746 | Msa0816150:CDS |
| CAGGCAATGATAGTGACCAG+AGG | 0.712647 | 5_3:-50206377 | Msa0816150:CDS |
| ATGCACCTATAGTAGATGAG+CGG | 0.720441 | 5_3:-50207780 | Msa0816150:CDS |
| GGGAGAAGAACAGTTCGCTG+CGG | 0.724708 | 5_3:+50205857 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATATATTTCTTATCA+GGG | - | chr5_3:50207118-50207137 | Msa0816150:intron | 10.0% |
| !!! | TAAGTTATGTTTTAAAAAAT+GGG | - | chr5_3:50208212-50208231 | Msa0816150:intron | 10.0% |
| !!! | ATATTATGATTTTGAGTAAT+GGG | + | chr5_3:50206528-50206547 | None:intergenic | 15.0% |
| !! | TATTCAAAATGTAATTCATT+AGG | + | chr5_3:50207040-50207059 | None:intergenic | 15.0% |
| !!! | TAATGAATTACATTTTGAAT+AGG | - | chr5_3:50207039-50207058 | Msa0816150:intron | 15.0% |
| !! | CAATTAATATATTTCTTATC+AGG | - | chr5_3:50207117-50207136 | Msa0816150:intron | 15.0% |
| !!! | TTTTATTTGAGTTTTTGTTT+TGG | - | chr5_3:50207755-50207774 | Msa0816150:CDS | 15.0% |
| !!! | TTTATTTGAGTTTTTGTTTT+GGG | - | chr5_3:50207756-50207775 | Msa0816150:CDS | 15.0% |
| !!! | GTAAGTTATGTTTTAAAAAA+TGG | - | chr5_3:50208211-50208230 | Msa0816150:intron | 15.0% |
| !! | AAGAAAGAAGAATAATGAAT+TGG | - | chr5_3:50206066-50206085 | Msa0816150:CDS | 20.0% |
| !! | GGAAAAAATGCATAATATAT+AGG | + | chr5_3:50206205-50206224 | None:intergenic | 20.0% |
| !! | CAACTTGATATATAAATTCA+TGG | + | chr5_3:50206354-50206373 | None:intergenic | 20.0% |
| !!! | CATATTATGATTTTGAGTAA+TGG | + | chr5_3:50206529-50206548 | None:intergenic | 20.0% |
| !! | ACATAAATTCATTTAGCATT+AGG | - | chr5_3:50206732-50206751 | Msa0816150:intron | 20.0% |
| !!! | ATGATTTATGATTTGTAGTT+GGG | + | chr5_3:50206802-50206821 | None:intergenic | 20.0% |
| !! | AGATTCAAATCAAATACATA+AGG | - | chr5_3:50206897-50206916 | Msa0816150:intron | 20.0% |
| !!! | TAAGGTCAGAAATTTTAAAT+GGG | + | chr5_3:50207004-50207023 | None:intergenic | 20.0% |
| !!! | TTAAGGTCAGAAATTTTAAA+TGG | + | chr5_3:50207005-50207024 | None:intergenic | 20.0% |
| !!! | TCAATTACATCTAGAATTAT+GGG | - | chr5_3:50207345-50207364 | Msa0816150:intron | 20.0% |
| !! | TAAATTTCTTCAATTCACTA+GGG | + | chr5_3:50207388-50207407 | None:intergenic | 20.0% |
| !!! | TGAGTTAATTACATTTTACA+GGG | + | chr5_3:50207421-50207440 | None:intergenic | 20.0% |
| !!! | ATGAGTTAATTACATTTTAC+AGG | + | chr5_3:50207422-50207441 | None:intergenic | 20.0% |
| !! | TAAGTTTATTCCAATTTCTA+TGG | - | chr5_3:50207985-50208004 | Msa0816150:intron | 20.0% |
| !!! | TTTATTACCATTTTTCCTAA+TGG | - | chr5_3:50208009-50208028 | Msa0816150:intron | 20.0% |
| !! | TTCAAAAAGAATAGTATATG+AGG | - | chr5_3:50208139-50208158 | Msa0816150:intron | 20.0% |
| !! | TAAAACATAACTTACTAACT+TGG | + | chr5_3:50208206-50208225 | None:intergenic | 20.0% |
| !!! | TTATGTTTTAAAAAATGGGT+AGG | - | chr5_3:50208216-50208235 | Msa0816150:intron | 20.0% |
| !!! | TATGTTTTAAAAAATGGGTA+GGG | - | chr5_3:50208217-50208236 | Msa0816150:intron | 20.0% |
| !! | TTAATCATTGTTGAATTTGT+TGG | - | chr5_3:50208257-50208276 | Msa0816150:intron | 20.0% |
| !!! | TAATCATTGTTGAATTTGTT+GGG | - | chr5_3:50208258-50208277 | Msa0816150:intron | 20.0% |
| !!! | TTGTAATTTTATTTGTGACT+AGG | - | chr5_3:50208338-50208357 | Msa0816150:intron | 20.0% |
| !!! | TTTTTATCTTTGCTTTGTTT+TGG | + | chr5_3:50208467-50208486 | None:intergenic | 20.0% |
| !! | AAACAAAGCAAAGATAAAAA+AGG | - | chr5_3:50208467-50208486 | Msa0816150:intron | 20.0% |
| !!! | TTGATAATTTTCTCATGAAA+TGG | + | chr5_3:50208812-50208831 | None:intergenic | 20.0% |
| !! | TTTCATGAGAAAATTATCAA+TGG | - | chr5_3:50208812-50208831 | Msa0816150:intron | 20.0% |
| !!! | AAAATTATCAATGGATTGTT+TGG | - | chr5_3:50208821-50208840 | Msa0816150:intron | 20.0% |
| !!! | AAATTATCAATGGATTGTTT+GGG | - | chr5_3:50208822-50208841 | Msa0816150:intron | 20.0% |
| ! | GAGTAATTATGAAACATTGT+TGG | - | chr5_3:50205994-50206013 | Msa0816150:CDS | 25.0% |
| ! | TAATTATGAAACATTGTTGG+AGG | - | chr5_3:50205997-50206016 | Msa0816150:CDS | 25.0% |
| !! | AAGAAAACTAGTTTAGTTGA+AGG | - | chr5_3:50206025-50206044 | Msa0816150:CDS | 25.0% |
| ! | CAATATTTATAAAGCAGCAT+TGG | + | chr5_3:50206226-50206245 | None:intergenic | 25.0% |
| ! | AATTCAATACAAGTGATGAT+CGG | - | chr5_3:50206246-50206265 | Msa0816150:CDS | 25.0% |
| !! | TGCCATGGAAATATAATTTT+TGG | - | chr5_3:50206299-50206318 | Msa0816150:CDS | 25.0% |
| ! | GTCCAAAAATTATATTTCCA+TGG | + | chr5_3:50206304-50206323 | None:intergenic | 25.0% |
| !!! | ATATAATTTTTGGACCAATG+AGG | - | chr5_3:50206309-50206328 | Msa0816150:CDS | 25.0% |
| !!! | TATAATTTTTGGACCAATGA+GGG | - | chr5_3:50206310-50206329 | Msa0816150:CDS | 25.0% |
| ! | ATGAATGTATAATGTGTTGT+TGG | - | chr5_3:50206380-50206399 | Msa0816150:CDS | 25.0% |
| ! | TAGTTAGTCAATTGTTAGAA+GGG | + | chr5_3:50206682-50206701 | None:intergenic | 25.0% |
| !!! | TGTTCTTTGTTTTGTTTGAT+AGG | + | chr5_3:50206715-50206734 | None:intergenic | 25.0% |
| ! | CATTTAGCATTAGGTTATTA+TGG | - | chr5_3:50206741-50206760 | Msa0816150:intron | 25.0% |
| !! | TGATTTATGATTTGTAGTTG+GGG | + | chr5_3:50206801-50206820 | None:intergenic | 25.0% |
| !! | GATGATTTATGATTTGTAGT+TGG | + | chr5_3:50206803-50206822 | None:intergenic | 25.0% |
| !! | TTGATTTGAATCTCTTCTAT+AGG | + | chr5_3:50206890-50206909 | None:intergenic | 25.0% |
| ! | AATATATTTCTTATCAGGGA+CGG | - | chr5_3:50207122-50207141 | Msa0816150:intron | 25.0% |
| !! | CTCAATTACATCTAGAATTA+TGG | - | chr5_3:50207344-50207363 | Msa0816150:intron | 25.0% |
| ! | CTAAATTTCTTCAATTCACT+AGG | + | chr5_3:50207389-50207408 | None:intergenic | 25.0% |
| ! | GAATTGAAGAAATTTAGATG+TGG | - | chr5_3:50207392-50207411 | Msa0816150:intron | 25.0% |
| ! | TAAAAAAGAGGAAAAGAGAA+TGG | + | chr5_3:50207948-50207967 | None:intergenic | 25.0% |
| ! | AGAGAAATCTGATAAAAAAG+AGG | + | chr5_3:50207960-50207979 | None:intergenic | 25.0% |
| ! | GGTAATAAATCCATAGAAAT+TGG | + | chr5_3:50207998-50208017 | None:intergenic | 25.0% |
| ! | TATGAAGTGAAAAATGTCAA+AGG | + | chr5_3:50208517-50208536 | None:intergenic | 25.0% |
| !! | CATTTTTCACTTCATATCAT+TGG | - | chr5_3:50208521-50208540 | Msa0816150:intron | 25.0% |
| !! | TTCTAACACAAACTTTTTGT+TGG | + | chr5_3:50208577-50208596 | None:intergenic | 25.0% |
| ! | TGTTAGAAAAAATTTCCAGT+TGG | - | chr5_3:50208589-50208608 | Msa0816150:intron | 25.0% |
| !!! | TCAGAAGAGTTAAGTTTTAT+TGG | + | chr5_3:50208974-50208993 | None:intergenic | 25.0% |
| !!! | TGTTTTTTCTATCCATTTCA+CGG | + | chr5_3:50209284-50209303 | None:intergenic | 25.0% |
| TTCGAATGACCATAAAAACT+TGG | - | chr5_3:50205751-50205770 | Msa0816150:CDS | 30.0% | |
| ! | TCATGTCTTCCAAGTTTTTA+TGG | + | chr5_3:50205763-50205782 | None:intergenic | 30.0% |
| ACAGTTTGATGAACTTGAAA+AGG | - | chr5_3:50205829-50205848 | Msa0816150:CDS | 30.0% | |
| TCTTCAAGAGAAGTTTGAAT+TGG | - | chr5_3:50205895-50205914 | Msa0816150:CDS | 30.0% | |
| GAAGAATAATGAATTGGAGT+TGG | - | chr5_3:50206072-50206091 | Msa0816150:CDS | 30.0% | |
| ACAGGTAGAATTTGAAAGAA+AGG | + | chr5_3:50206414-50206433 | None:intergenic | 30.0% | |
| ! | TTGAGTAATGGGACTTAAAT+GGG | + | chr5_3:50206517-50206536 | None:intergenic | 30.0% |
| ! | TTTGAGTAATGGGACTTAAA+TGG | + | chr5_3:50206518-50206537 | None:intergenic | 30.0% |
| GTAGTTAGTCAATTGTTAGA+AGG | + | chr5_3:50206683-50206702 | None:intergenic | 30.0% | |
| GGGGATTTAATTCAGATTAA+AGG | + | chr5_3:50206782-50206801 | None:intergenic | 30.0% | |
| TTAGGTAAGAACAAGCATTA+AGG | + | chr5_3:50207022-50207041 | None:intergenic | 30.0% | |
| CTACATAAAGAGGTAATAGA+GGG | + | chr5_3:50207195-50207214 | None:intergenic | 30.0% | |
| CTCTATTACCTCTTTATGTA+GGG | - | chr5_3:50207194-50207213 | Msa0816150:intron | 30.0% | |
| AGAATGAACTTCAAAAACTG+AGG | + | chr5_3:50207824-50207843 | None:intergenic | 30.0% | |
| TCTCAAACCATTAGGAAAAA+TGG | + | chr5_3:50208019-50208038 | None:intergenic | 30.0% | |
| !! | TTTGGATGAGATTTTGATGT+TGG | - | chr5_3:50208081-50208100 | Msa0816150:intron | 30.0% |
| ATAACTTACTAACTTGGTTG+TGG | + | chr5_3:50208200-50208219 | None:intergenic | 30.0% | |
| !!! | TTGTTCTTGACTGTTTTTGT+AGG | - | chr5_3:50208428-50208447 | Msa0816150:intron | 30.0% |
| !!! | ACTGTTTTTGTAGGAACAAA+TGG | - | chr5_3:50208437-50208456 | Msa0816150:intron | 30.0% |
| AGAAAAAATTTCCAGTTGGA+AGG | - | chr5_3:50208593-50208612 | Msa0816150:intron | 30.0% | |
| GAAAAAATTTCCAGTTGGAA+GGG | - | chr5_3:50208594-50208613 | Msa0816150:intron | 30.0% | |
| GTACAAATTCTCAGATATTC+AGG | - | chr5_3:50208616-50208635 | Msa0816150:intron | 30.0% | |
| TTCTTTGCAAATGCATATCT+GGG | - | chr5_3:50208713-50208732 | Msa0816150:intron | 30.0% | |
| TTATAGTTCCCATCTTCTTT+AGG | + | chr5_3:50208743-50208762 | None:intergenic | 30.0% | |
| !!! | AAATTCACTAGTTTTGTGAG+AGG | - | chr5_3:50208776-50208795 | Msa0816150:intron | 30.0% |
| !!! | AATTCACTAGTTTTGTGAGA+GGG | - | chr5_3:50208777-50208796 | Msa0816150:intron | 30.0% |
| ! | TTGATAACTGCAATCCTTAA+GGG | - | chr5_3:50209088-50209107 | Msa0816150:intron | 30.0% |
| ! | CAATTTCCTCATTCTTTTCA+GGG | + | chr5_3:50209240-50209259 | None:intergenic | 30.0% |
| ! | ACAATTTCCTCATTCTTTTC+AGG | + | chr5_3:50209241-50209260 | None:intergenic | 30.0% |
| ATAAACCCAAAATCGAACCT+GGG | - | chr5_3:50205723-50205742 | Msa0816150:CDS | 35.0% | |
| TTGAATTGGAGAGACTAATG+AGG | - | chr5_3:50205909-50205928 | Msa0816150:CDS | 35.0% | |
| TTCAAGCTGAAGAAGATTTG+AGG | - | chr5_3:50205933-50205952 | Msa0816150:CDS | 35.0% | |
| AGAAGATTTGAGGAAAAGAG+AGG | - | chr5_3:50205943-50205962 | Msa0816150:CDS | 35.0% | |
| TTAGTTGAAGGAGACATTGT+TGG | - | chr5_3:50206037-50206056 | Msa0816150:CDS | 35.0% | |
| !! | GATTTTTCAATAGCTTGCCA+TGG | - | chr5_3:50206284-50206303 | Msa0816150:CDS | 35.0% |
| CTAAGAACAAATACCCTCAT+TGG | + | chr5_3:50206326-50206345 | None:intergenic | 35.0% | |
| TACACACAAATATTCACACG+CGG | + | chr5_3:50206447-50206466 | None:intergenic | 35.0% | |
| TGTGTGTAATTATGTCCCTT+TGG | - | chr5_3:50206459-50206478 | Msa0816150:CDS | 35.0% | |
| ACGTTGAAGGAGATTTAAGA+AGG | - | chr5_3:50206621-50206640 | Msa0816150:intron | 35.0% | |
| TTGAAGGAGATTTAAGAAGG+AGG | - | chr5_3:50206624-50206643 | Msa0816150:intron | 35.0% | |
| GATTAAAGGCTATCTTGTCT+AGG | + | chr5_3:50206768-50206787 | None:intergenic | 35.0% | |
| !! | TTTTCATGAGTGTTGTGGAT+GGG | + | chr5_3:50206939-50206958 | None:intergenic | 35.0% |
| !! | ATTTTCATGAGTGTTGTGGA+TGG | + | chr5_3:50206940-50206959 | None:intergenic | 35.0% |
| !! | ATGGATTTTCATGAGTGTTG+TGG | + | chr5_3:50206944-50206963 | None:intergenic | 35.0% |
| ACTTCTAGACTGCATAAGAA+TGG | + | chr5_3:50206963-50206982 | None:intergenic | 35.0% | |
| CCTACATAAAGAGGTAATAG+AGG | + | chr5_3:50207196-50207215 | None:intergenic | 35.0% | |
| CCTCTATTACCTCTTTATGT+AGG | - | chr5_3:50207193-50207212 | Msa0816150:intron | 35.0% | |
| AATTGCAAGTCATACTGAAC+TGG | - | chr5_3:50207558-50207577 | Msa0816150:intron | 35.0% | |
| ATTGCAAGTCATACTGAACT+GGG | - | chr5_3:50207559-50207578 | Msa0816150:intron | 35.0% | |
| !!! | TGAGTTTTTGTTTTGGGTGT+TGG | - | chr5_3:50207762-50207781 | Msa0816150:CDS | 35.0% |
| CAAAATCTCATCCAAACTGT+GGG | + | chr5_3:50208077-50208096 | None:intergenic | 35.0% | |
| TCAAAATCTCATCCAAACTG+TGG | + | chr5_3:50208078-50208097 | None:intergenic | 35.0% | |
| ! | ATGTTGGTTGTCGTGATTAT+GGG | - | chr5_3:50208097-50208116 | Msa0816150:intron | 35.0% |
| GTTATGCATCCAACTATTTC+AGG | - | chr5_3:50208169-50208188 | Msa0816150:intron | 35.0% | |
| ATAGGTCCTTGTTCTAACTT+TGG | - | chr5_3:50208392-50208411 | Msa0816150:intron | 35.0% | |
| TAGCATCCAAAGTTAGAACA+AGG | + | chr5_3:50208401-50208420 | None:intergenic | 35.0% | |
| TCTGACAACATTTGCAAAAG+AGG | - | chr5_3:50208667-50208686 | Msa0816150:intron | 35.0% | |
| GTTCTTTGCAAATGCATATC+TGG | - | chr5_3:50208712-50208731 | Msa0816150:intron | 35.0% | |
| ! | GTGTTCATTTGAAGCAAGAA+AGG | - | chr5_3:50208862-50208881 | Msa0816150:intron | 35.0% |
| ATGATCAATGTTAGATCCCT+TGG | + | chr5_3:50208888-50208907 | None:intergenic | 35.0% | |
| ATCTTTCTTCCTAACCCAAT+CGG | + | chr5_3:50208945-50208964 | None:intergenic | 35.0% | |
| AAGTCTGACACATTTGAACA+CGG | + | chr5_3:50209049-50209068 | None:intergenic | 35.0% | |
| ! | TATCAAGGTTGCTTTCTGAA+GGG | + | chr5_3:50209074-50209093 | None:intergenic | 35.0% |
| ! | TTATCAAGGTTGCTTTCTGA+AGG | + | chr5_3:50209075-50209094 | None:intergenic | 35.0% |
| CTTAAGGATTGCAGTTATCA+AGG | + | chr5_3:50209089-50209108 | None:intergenic | 35.0% | |
| ! | CTTGATAACTGCAATCCTTA+AGG | - | chr5_3:50209087-50209106 | Msa0816150:intron | 35.0% |
| ! | TGATCAACAAGCTTTGTGAA+AGG | - | chr5_3:50209203-50209222 | Msa0816150:CDS | 35.0% |
| ! | GATCAACAAGCTTTGTGAAA+GGG | - | chr5_3:50209204-50209223 | Msa0816150:CDS | 35.0% |
| CATAAACCCAAAATCGAACC+TGG | - | chr5_3:50205722-50205741 | Msa0816150:CDS | 40.0% | |
| ! | GAGCATTCAGGAACTTGTTT+CGG | - | chr5_3:50205781-50205800 | Msa0816150:CDS | 40.0% |
| TGAGAAAGTTGAAGCGAAAG+TGG | - | chr5_3:50206107-50206126 | Msa0816150:CDS | 40.0% | |
| GAGAAAGTTGAAGCGAAAGT+GGG | - | chr5_3:50206108-50206127 | Msa0816150:CDS | 40.0% | |
| ! | ATCGAACAAGTTGGACCAAA+GGG | + | chr5_3:50206477-50206496 | None:intergenic | 40.0% |
| ! | AATCGAACAAGTTGGACCAA+AGG | + | chr5_3:50206478-50206497 | None:intergenic | 40.0% |
| ! | TTTGGTCCAACTTGTTCGAT+TGG | - | chr5_3:50206477-50206496 | Msa0816150:CDS | 40.0% |
| AATGGGACTTAAATGGGAAC+AGG | + | chr5_3:50206511-50206530 | None:intergenic | 40.0% | |
| TAGTTTCCGGGAATCAAATC+CGG | + | chr5_3:50206652-50206671 | None:intergenic | 40.0% | |
| ! | AAGGGAGAATGTTAGTTTCC+GGG | + | chr5_3:50206664-50206683 | None:intergenic | 40.0% |
| ! | GAAGGGAGAATGTTAGTTTC+CGG | + | chr5_3:50206665-50206684 | None:intergenic | 40.0% |
| TCATCCTAAGAGTGATGAGT+CGG | - | chr5_3:50206818-50206837 | Msa0816150:intron | 40.0% | |
| GAACTAAAAGAGCTAGGGTT+GGG | - | chr5_3:50207148-50207167 | Msa0816150:intron | 40.0% | |
| AACTAAAAGAGCTAGGGTTG+GGG | - | chr5_3:50207149-50207168 | Msa0816150:intron | 40.0% | |
| ATGCACCTATAGTAGATGAG+CGG | - | chr5_3:50207232-50207251 | Msa0816150:intron | 40.0% | |
| TGACAACGTTCATATCTCAC+AGG | - | chr5_3:50207263-50207282 | Msa0816150:intron | 40.0% | |
| TTGCAAGTCATACTGAACTG+GGG | - | chr5_3:50207560-50207579 | Msa0816150:intron | 40.0% | |
| !! | TTACTTGTTCCGTACTGACT+TGG | - | chr5_3:50207652-50207671 | Msa0816150:intron | 40.0% |
| TGTGTACTAAGCATGCAAAG+AGG | + | chr5_3:50207691-50207710 | None:intergenic | 40.0% | |
| CTTTCAGCTCTCAAACCATT+AGG | + | chr5_3:50208027-50208046 | None:intergenic | 40.0% | |
| TTTCTTTCCTTCCCACAGTT+TGG | - | chr5_3:50208063-50208082 | Msa0816150:intron | 40.0% | |
| ! | GATGTTGGTTGTCGTGATTA+TGG | - | chr5_3:50208096-50208115 | Msa0816150:intron | 40.0% |
| GCATCCAACTATTTCAGGAA+AGG | - | chr5_3:50208174-50208193 | Msa0816150:intron | 40.0% | |
| GATGCACGAGTATGATGAAA+TGG | - | chr5_3:50208314-50208333 | Msa0816150:intron | 40.0% | |
| ACTAGGCATGCTTGTGTTAA+GGG | - | chr5_3:50208355-50208374 | Msa0816150:intron | 40.0% | |
| AGGGATGGTTACTTGTTCAT+AGG | - | chr5_3:50208374-50208393 | Msa0816150:intron | 40.0% | |
| AAAGGAACTAGATGAGACGT+TGG | + | chr5_3:50208499-50208518 | None:intergenic | 40.0% | |
| ACTTCGAATAGTGCTCTTGA+TGG | + | chr5_3:50208548-50208567 | None:intergenic | 40.0% | |
| ! | AGAGCACTATTCGAAGTTTC+TGG | - | chr5_3:50208551-50208570 | Msa0816150:intron | 40.0% |
| AGAATTTGTACCCTTCCAAC+TGG | + | chr5_3:50208607-50208626 | None:intergenic | 40.0% | |
| ! | AATGATAGTGACCAGAGGAT+GGG | - | chr5_3:50208640-50208659 | Msa0816150:intron | 40.0% |
| TAGTTCCCATCTTCTTTAGG+AGG | + | chr5_3:50208740-50208759 | None:intergenic | 40.0% | |
| !!! | TAGTTTTGTGAGAGGGAAGA+AGG | - | chr5_3:50208784-50208803 | Msa0816150:intron | 40.0% |
| ! | ATTTGAAGCAAGAAAGGCCA+AGG | - | chr5_3:50208868-50208887 | Msa0816150:CDS | 40.0% |
| ! | TTTGAAGCAAGAAAGGCCAA+GGG | - | chr5_3:50208869-50208888 | Msa0816150:CDS | 40.0% |
| GGGATCTAACATTGATCATC+AGG | - | chr5_3:50208889-50208908 | Msa0816150:CDS | 40.0% | |
| AGATTCTTAGTACTCTGTGC+AGG | - | chr5_3:50208912-50208931 | Msa0816150:CDS | 40.0% | |
| ! | GATTGGGTTAGGAAGAAAGA+TGG | - | chr5_3:50208944-50208963 | Msa0816150:CDS | 40.0% |
| ! | ATCAAGGTTGCTTTCTGAAG+GGG | + | chr5_3:50209073-50209092 | None:intergenic | 40.0% |
| ! | GAAGGTCATTTGCTAGGAAA+CGG | + | chr5_3:50209132-50209151 | None:intergenic | 40.0% |
| GTTTCCTAGCAAATGACCTT+CGG | - | chr5_3:50209131-50209150 | Msa0816150:CDS | 40.0% | |
| TTTCCTAGCAAATGACCTTC+GGG | - | chr5_3:50209132-50209151 | Msa0816150:CDS | 40.0% | |
| ! | GCATGGTTTATGTAGCTTGT+GGG | + | chr5_3:50209178-50209197 | None:intergenic | 40.0% |
| TGCATGGTTTATGTAGCTTG+TGG | + | chr5_3:50209179-50209198 | None:intergenic | 40.0% | |
| ! | GCTTGTTGATCAATGATGCA+TGG | + | chr5_3:50209195-50209214 | None:intergenic | 40.0% |
| GATGTACCCTGAAAAGAATG+AGG | - | chr5_3:50209231-50209250 | Msa0816150:CDS | 40.0% | |
| ! | GACAACCCAGGTTCGATTTT+GGG | + | chr5_3:50205731-50205750 | None:intergenic | 45.0% |
| ! | AGACAACCCAGGTTCGATTT+TGG | + | chr5_3:50205732-50205751 | None:intergenic | 45.0% |
| CTTGGAAGACATGAGCATTC+AGG | - | chr5_3:50205769-50205788 | Msa0816150:CDS | 45.0% | |
| AGCTATGCGAAAGAGGGAAA+AGG | - | chr5_3:50205966-50205985 | Msa0816150:CDS | 45.0% | |
| GCTATGCGAAAGAGGGAAAA+GGG | - | chr5_3:50205967-50205986 | Msa0816150:CDS | 45.0% | |
| AAAGTTGAAGCGAAAGTGGG+TGG | - | chr5_3:50206111-50206130 | Msa0816150:CDS | 45.0% | |
| GATGATAGCAATGCTGCTCA+AGG | - | chr5_3:50206133-50206152 | Msa0816150:CDS | 45.0% | |
| GCTCAAGGTGAATCATCATC+TGG | - | chr5_3:50206148-50206167 | Msa0816150:CDS | 45.0% | |
| CAATCGCCAATCGAACAAGT+TGG | + | chr5_3:50206486-50206505 | None:intergenic | 45.0% | |
| ! | CAACTTGTTCGATTGGCGAT+TGG | - | chr5_3:50206484-50206503 | Msa0816150:CDS | 45.0% |
| AGATAAACACTTCCCCGCAT+AGG | - | chr5_3:50206575-50206594 | Msa0816150:intron | 45.0% | |
| TAGCTCGGTTGTTGAGCTAA+AGG | - | chr5_3:50206598-50206617 | Msa0816150:intron | 45.0% | |
| GTTGAGCTAAAGGACGTTGA+AGG | - | chr5_3:50206608-50206627 | Msa0816150:intron | 45.0% | |
| GAGATTTAAGAAGGAGGTCC+CGG | - | chr5_3:50206630-50206649 | Msa0816150:intron | 45.0% | |
| AGTTTCCGGGAATCAAATCC+GGG | + | chr5_3:50206651-50206670 | None:intergenic | 45.0% | |
| TTCTCCGACTCATCACTCTT+AGG | + | chr5_3:50206825-50206844 | None:intergenic | 45.0% | |
| GGCACGAACTAAAAGAGCTA+GGG | - | chr5_3:50207143-50207162 | Msa0816150:intron | 45.0% | |
| CGAACTAAAAGAGCTAGGGT+TGG | - | chr5_3:50207147-50207166 | Msa0816150:intron | 45.0% | |
| AGAGGGTTCACGTCCAAAAT+GGG | + | chr5_3:50207178-50207197 | None:intergenic | 45.0% | |
| TAGAGGGTTCACGTCCAAAA+TGG | + | chr5_3:50207179-50207198 | None:intergenic | 45.0% | |
| TCTTGCCGCTCATCTACTAT+AGG | + | chr5_3:50207240-50207259 | None:intergenic | 45.0% | |
| CAACGTTCATATCTCACAGG+AGG | - | chr5_3:50207266-50207285 | Msa0816150:intron | 45.0% | |
| !! | AGAATGAGGCCAAAAGCGTT+TGG | + | chr5_3:50207613-50207632 | None:intergenic | 45.0% |
| ! | AAACGCTTTTGGCCTCATTC+TGG | - | chr5_3:50207612-50207631 | Msa0816150:intron | 45.0% |
| CAGTTAAGCACTCCAGAATG+AGG | + | chr5_3:50207627-50207646 | None:intergenic | 45.0% | |
| TGCATGCTTAGTACACATGC+TGG | - | chr5_3:50207694-50207713 | Msa0816150:intron | 45.0% | |
| !! | TGCAGTGTAGTTGGTGATTG+AGG | - | chr5_3:50207727-50207746 | Msa0816150:CDS | 45.0% |
| !! | AGTGTAGTTGGTGATTGAGG+TGG | - | chr5_3:50207730-50207749 | Msa0816150:CDS | 45.0% |
| AGGCTTTGCATAAGAGAGGA+AGG | + | chr5_3:50207869-50207888 | None:intergenic | 45.0% | |
| GAGAAGGCTTTGCATAAGAG+AGG | + | chr5_3:50207873-50207892 | None:intergenic | 45.0% | |
| GAGAATGGTTGTGCGACATT+GGG | + | chr5_3:50207933-50207952 | None:intergenic | 45.0% | |
| AGAGAATGGTTGTGCGACAT+TGG | + | chr5_3:50207934-50207953 | None:intergenic | 45.0% | |
| ATCTCATCCAAACTGTGGGA+AGG | + | chr5_3:50208073-50208092 | None:intergenic | 45.0% | |
| GTTGTCGTGATTATGGGTAC+TGG | - | chr5_3:50208103-50208122 | Msa0816150:intron | 45.0% | |
| GTGGCCTTTCCTGAAATAGT+TGG | + | chr5_3:50208181-50208200 | None:intergenic | 45.0% | |
| GACTAGGCATGCTTGTGTTA+AGG | - | chr5_3:50208354-50208373 | Msa0816150:intron | 45.0% | |
| ! | CAATGATAGTGACCAGAGGA+TGG | - | chr5_3:50208639-50208658 | Msa0816150:intron | 45.0% |
| ! | ATGATAGTGACCAGAGGATG+GGG | - | chr5_3:50208641-50208660 | Msa0816150:intron | 45.0% |
| TGGGTCCTCCTAAAGAAGAT+GGG | - | chr5_3:50208732-50208751 | Msa0816150:intron | 45.0% | |
| CACATTTGAACACGGAAGCA+AGG | + | chr5_3:50209041-50209060 | None:intergenic | 45.0% | |
| ! | ACAAGCTTTGTGAAAGGGTG+AGG | - | chr5_3:50209209-50209228 | Msa0816150:CDS | 45.0% |
| TCTATCCATTTCACGGTGAC+TGG | + | chr5_3:50209277-50209296 | None:intergenic | 45.0% | |
| TGGTCATTCGAAGACAACCC+AGG | + | chr5_3:50205743-50205762 | None:intergenic | 50.0% | |
| AGAGAGGAGCTATGCGAAAG+AGG | - | chr5_3:50205959-50205978 | Msa0816150:CDS | 50.0% | |
| GAGAGGAGCTATGCGAAAGA+GGG | - | chr5_3:50205960-50205979 | Msa0816150:CDS | 50.0% | |
| ACACGCGGTATACACACTAC+AGG | + | chr5_3:50206432-50206451 | None:intergenic | 50.0% | |
| AACAACCGAGCTACCTATGC+GGG | + | chr5_3:50206591-50206610 | None:intergenic | 50.0% | |
| CAACAACCGAGCTACCTATG+CGG | + | chr5_3:50206592-50206611 | None:intergenic | 50.0% | |
| CGGCACGAACTAAAAGAGCT+AGG | - | chr5_3:50207142-50207161 | Msa0816150:intron | 50.0% | |
| TGCACGCTCCCTACATAAAG+AGG | + | chr5_3:50207205-50207224 | None:intergenic | 50.0% | |
| ATACCTGCACGTCTGATGGA+GGG | + | chr5_3:50207317-50207336 | None:intergenic | 50.0% | |
| CATCATACCTGCACGTCTGA+TGG | + | chr5_3:50207321-50207340 | None:intergenic | 50.0% | |
| !! | TGCAAAGAGGCACTCCAATG+CGG | + | chr5_3:50207678-50207697 | None:intergenic | 50.0% |
| ! | ATCTTTGCCTGGGTTGAGGA+GGG | + | chr5_3:50207895-50207914 | None:intergenic | 50.0% |
| ! | AATCTTTGCCTGGGTTGAGG+AGG | + | chr5_3:50207896-50207915 | None:intergenic | 50.0% |
| CAGAATCTTTGCCTGGGTTG+AGG | + | chr5_3:50207899-50207918 | None:intergenic | 50.0% | |
| GGTGGTCAGAATCTTTGCCT+GGG | + | chr5_3:50207905-50207924 | None:intergenic | 50.0% | |
| AGGTGGTCAGAATCTTTGCC+TGG | + | chr5_3:50207906-50207925 | None:intergenic | 50.0% | |
| GGCATGCTTGTGTTAAGGGA+TGG | - | chr5_3:50208359-50208378 | Msa0816150:intron | 50.0% | |
| GGAACTAGATGAGACGTTGG+TGG | + | chr5_3:50208496-50208515 | None:intergenic | 50.0% | |
| ! | CAGGCAATGATAGTGACCAG+AGG | - | chr5_3:50208635-50208654 | Msa0816150:intron | 50.0% |
| ! | TGATAGTGACCAGAGGATGG+GGG | - | chr5_3:50208642-50208661 | Msa0816150:intron | 50.0% |
| CTGGGTCCTCCTAAAGAAGA+TGG | - | chr5_3:50208731-50208750 | Msa0816150:intron | 50.0% | |
| ATGCTTTAGCAGTGGGTGTC+AGG | + | chr5_3:50208997-50209016 | None:intergenic | 50.0% | |
| TGACACCCACTGCTAAAGCA+TGG | - | chr5_3:50208996-50209015 | Msa0816150:CDS | 50.0% | |
| GACACCCACTGCTAAAGCAT+GGG | - | chr5_3:50208997-50209016 | Msa0816150:CDS | 50.0% | |
| GTTGCCCATGCTTTAGCAGT+GGG | + | chr5_3:50209004-50209023 | None:intergenic | 50.0% | |
| TGTTGCCCATGCTTTAGCAG+TGG | + | chr5_3:50209005-50209024 | None:intergenic | 50.0% | |
| !! | CATTGACTGGTTCGCCCTTA+AGG | + | chr5_3:50209105-50209124 | None:intergenic | 50.0% |
| AAGGGCGAACCAGTCAATGT+CGG | - | chr5_3:50209106-50209125 | Msa0816150:intron | 50.0% | |
| !! | TTCACGGTGACTGGTCTAGA+TGG | + | chr5_3:50209268-50209287 | None:intergenic | 50.0% |
| CTAGACCAGTCACCGTGAAA+TGG | - | chr5_3:50209269-50209288 | Msa0816150:CDS | 50.0% | |
| ACTTCCCCGCATAGGTAGCT+CGG | - | chr5_3:50206583-50206602 | Msa0816150:intron | 55.0% | |
| ACAACCGAGCTACCTATGCG+GGG | + | chr5_3:50206590-50206609 | None:intergenic | 55.0% | |
| GAGGTCCCGGATTTGATTCC+CGG | - | chr5_3:50206643-50206662 | Msa0816150:intron | 55.0% | |
| ! | AGGGTTGGGGTTGCCCATTT+TGG | - | chr5_3:50207162-50207181 | Msa0816150:intron | 55.0% |
| CATACCTGCACGTCTGATGG+AGG | + | chr5_3:50207318-50207337 | None:intergenic | 55.0% | |
| ! | GGGCACGTTCCAAACGCTTT+TGG | - | chr5_3:50207601-50207620 | Msa0816150:intron | 55.0% |
| CCAATGCGGCCAAGTCAGTA+CGG | + | chr5_3:50207664-50207683 | None:intergenic | 55.0% | |
| !!! | TGTTTTGGGTGTTGGAGCGC+AGG | - | chr5_3:50207770-50207789 | Msa0816150:CDS | 55.0% |
| GTTGTGCGACATTGGGCATG+AGG | + | chr5_3:50207926-50207945 | None:intergenic | 55.0% | |
| GATAGTGACCAGAGGATGGG+GGG | - | chr5_3:50208643-50208662 | Msa0816150:intron | 55.0% | |
| TTCCTAACCCAATCGGCCTC+GGG | + | chr5_3:50208938-50208957 | None:intergenic | 55.0% | |
| CTTCCTAACCCAATCGGCCT+CGG | + | chr5_3:50208939-50208958 | None:intergenic | 55.0% | |
| AGGAAACGGCCGACATTGAC+TGG | + | chr5_3:50209118-50209137 | None:intergenic | 55.0% | |
| GGGAGAAGAACAGTTCGCTG+CGG | + | chr5_3:50209158-50209177 | None:intergenic | 55.0% | |
| !! | CGGTGTCGCGTACAGCGTTT+CGG | - | chr5_3:50205801-50205820 | Msa0816150:CDS | 60.0% |
| TGTCCCTCCATCAGACGTGC+AGG | - | chr5_3:50207311-50207330 | Msa0816150:intron | 60.0% | |
| GGCTTCCACCTGTGCGCTTA+GGG | - | chr5_3:50207581-50207600 | Msa0816150:intron | 60.0% | |
| !! | CCGTACTGACTTGGCCGCAT+TGG | - | chr5_3:50207661-50207680 | Msa0816150:intron | 60.0% |
| CGCGCTGAGTGCAGTGTAGT+TGG | - | chr5_3:50207718-50207737 | Msa0816150:CDS | 60.0% | |
| !! | TTTGGGTGTTGGAGCGCAGG+AGG | - | chr5_3:50207773-50207792 | Msa0816150:CDS | 60.0% |
| !! | TTGGGTGTTGGAGCGCAGGA+GGG | - | chr5_3:50207774-50207793 | Msa0816150:CDS | 60.0% |
| GTGCGACATTGGGCATGAGG+TGG | + | chr5_3:50207923-50207942 | None:intergenic | 60.0% | |
| TGTCAGATCCCCCCATCCTC+TGG | + | chr5_3:50208654-50208673 | None:intergenic | 60.0% | |
| TAGTACTCTGTGCAGGCCCG+AGG | - | chr5_3:50208919-50208938 | Msa0816150:CDS | 60.0% | |
| CGGCCCGAAGGTCATTTGCT+AGG | + | chr5_3:50209138-50209157 | None:intergenic | 60.0% | |
| GGGCTTCCACCTGTGCGCTT+AGG | - | chr5_3:50207580-50207599 | Msa0816150:intron | 65.0% | |
| ACGTGCCCTAAGCGCACAGG+TGG | + | chr5_3:50207589-50207608 | None:intergenic | 65.0% | |
| GGAACGTGCCCTAAGCGCAC+AGG | + | chr5_3:50207592-50207611 | None:intergenic | 65.0% | |
| GCCTTCTCCCTCCTCAACCC+AGG | - | chr5_3:50207885-50207904 | Msa0816150:intron | 65.0% | |
| ! | GCCTGGGTTGAGGAGGGAGA+AGG | + | chr5_3:50207889-50207908 | None:intergenic | 65.0% |
| AACAGTTCGCTGCGGCCCGA+AGG | + | chr5_3:50209150-50209169 | None:intergenic | 65.0% | |
| CGCGCTGGGGTTCTGCTGCA+TGG | - | chr5_3:50207798-50207817 | Msa0816150:CDS | 70.0% | |
| TGTGCAGGCCCGAGGCCGAT+TGG | - | chr5_3:50208927-50208946 | Msa0816150:CDS | 70.0% | |
| GTGCAGGCCCGAGGCCGATT+GGG | - | chr5_3:50208928-50208947 | Msa0816150:CDS | 70.0% | |
| GGCCCGAGGCCGATTGGGTT+AGG | - | chr5_3:50208933-50208952 | Msa0816150:CDS | 70.0% | |
| GAGCGCAGGAGGGACGCGCT+GGG | - | chr5_3:50207784-50207803 | Msa0816150:CDS | 75.0% | |
| AGCGCAGGAGGGACGCGCTG+GGG | - | chr5_3:50207785-50207804 | Msa0816150:CDS | 75.0% | |
| ! | GGAGCGCAGGAGGGACGCGC+TGG | - | chr5_3:50207783-50207802 | Msa0816150:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 50205716 | 50209318 | 50205716 | ID=Msa0816150;Name=Msa0816150 |
| chr5_3 | mRNA | 50205716 | 50209318 | 50205716 | ID=Msa0816150-mRNA-1;Parent=Msa0816150;Name=Msa0816150-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.25|0|1|0.5|0.4|5|0|490 |
| chr5_3 | exon | 50209128 | 50209318 | 50209128 | ID=Msa0816150-mRNA-1:exon:15107;Parent=Msa0816150-mRNA-1 |
| chr5_3 | exon | 50208865 | 50209103 | 50208865 | ID=Msa0816150-mRNA-1:exon:15106;Parent=Msa0816150-mRNA-1 |
| chr5_3 | exon | 50207702 | 50207895 | 50207702 | ID=Msa0816150-mRNA-1:exon:15105;Parent=Msa0816150-mRNA-1 |
| chr5_3 | exon | 50206447 | 50206584 | 50206447 | ID=Msa0816150-mRNA-1:exon:15104;Parent=Msa0816150-mRNA-1 |
| chr5_3 | exon | 50205716 | 50206426 | 50205716 | ID=Msa0816150-mRNA-1:exon:15103;Parent=Msa0816150-mRNA-1 |
| chr5_3 | CDS | 50209128 | 50209318 | 50209128 | ID=Msa0816150-mRNA-1:cds;Parent=Msa0816150-mRNA-1 |
| chr5_3 | CDS | 50208865 | 50209103 | 50208865 | ID=Msa0816150-mRNA-1:cds;Parent=Msa0816150-mRNA-1 |
| chr5_3 | CDS | 50207702 | 50207895 | 50207702 | ID=Msa0816150-mRNA-1:cds;Parent=Msa0816150-mRNA-1 |
| chr5_3 | CDS | 50206447 | 50206584 | 50206447 | ID=Msa0816150-mRNA-1:cds;Parent=Msa0816150-mRNA-1 |
| chr5_3 | CDS | 50205716 | 50206426 | 50205716 | ID=Msa0816150-mRNA-1:cds;Parent=Msa0816150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
