Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457180 | RHN67602.1 | 78.723 | 235 | 33 | 3 | 1 | 218 | 6 | 240 | 4.82e-124 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457180 | A0A396IPT9 | 78.723 | 235 | 33 | 3 | 1 | 218 | 6 | 240 | 2.30e-124 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0457180 | 0.807856 | 4.120350e-50 | -8.615850e-47 |
| Msa0157290 | Msa0457180 | 0.808423 | 3.120267e-50 | -8.615850e-47 |
| Msa0365010 | Msa0457180 | 0.840038 | 1.106225e-57 | -8.615850e-47 |
| Msa0457180 | Msa0512900 | 0.805778 | 1.132795e-49 | -8.615850e-47 |
| Msa0457180 | Msa0688270 | 0.802217 | 6.230417e-49 | -8.615850e-47 |
| Msa0457180 | Msa0724210 | 0.803138 | 4.021197e-49 | -8.615850e-47 |
| Msa0457180 | Msa0740510 | 0.801539 | 8.585637e-49 | -8.615850e-47 |
| Msa0457180 | Msa0760130 | 0.802106 | 6.565130e-49 | -8.615850e-47 |
| Msa0457180 | Msa0820770 | 0.800234 | 1.585874e-48 | -8.615850e-47 |
| Msa0457180 | Msa0880140 | 0.806569 | 7.717078e-50 | -8.615850e-47 |
| Msa0457180 | Msa0926890 | 0.806041 | 9.972902e-50 | -8.615850e-47 |
| Msa0457180 | Msa1014540 | 0.803596 | 3.232478e-49 | -8.615850e-47 |
| Msa0457180 | Msa1082500 | 0.817640 | 2.969676e-52 | -8.615850e-47 |
| Msa0457180 | Msa1238930 | 0.804872 | 1.753715e-49 | -8.615850e-47 |
| Msa0457180 | Msa1284680 | 0.806093 | 9.725760e-50 | -8.615850e-47 |
| Msa0287650 | Msa0457180 | 0.803083 | 4.128357e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457180 | MtrunA17_Chr3g0104461 | 78.723 | 235 | 33 | 3 | 1 | 218 | 6 | 240 | 4.43e-128 | 366 |
| Msa0457180 | MtrunA17_Chr6g0477881 | 32.394 | 142 | 68 | 3 | 13 | 127 | 282 | 422 | 8.35e-11 | 63.2 |
| Msa0457180 | MtrunA17_Chr6g0477921 | 32.394 | 142 | 68 | 3 | 13 | 127 | 282 | 422 | 8.44e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCGAACTTATCATATTT+TGG | 0.135203 | 3_3:-51641819 | None:intergenic |
| TACAAGAAGGTTGGATTTAA+AGG | 0.166087 | 3_3:+51642644 | Msa0457180:CDS |
| TATTTCTCGACACCAATTTA+AGG | 0.220599 | 3_3:+51641890 | Msa0457180:CDS |
| CGGCAGATACTTCTTGATTC+TGG | 0.254435 | 3_3:-51642417 | None:intergenic |
| GATACTGAATTTGAAGTCTT+TGG | 0.277517 | 3_3:-51641856 | None:intergenic |
| CTCGAACAGCGTCCTTAAAT+TGG | 0.286125 | 3_3:-51641902 | None:intergenic |
| TTTCTCTTTGCCGCTTCATT+TGG | 0.322340 | 3_3:-51642307 | None:intergenic |
| CGAGAAGTTGTCAAATGAAT+TGG | 0.331298 | 3_3:+51641758 | Msa0457180:CDS |
| TTCCAGGTCTAAGTGGATTA+AGG | 0.335256 | 3_3:+51642115 | Msa0457180:CDS |
| TGAATTGGACAATGCATCTA+AGG | 0.342142 | 3_3:+51641773 | Msa0457180:CDS |
| AATTCCATCCCAACTTCTTA+AGG | 0.367504 | 3_3:-51642847 | None:intergenic |
| TGCATGCAACTTCCAACTTT+CGG | 0.380224 | 3_3:-51642822 | None:intergenic |
| TGAGGACGAGGAGGAGGAGG+AGG | 0.395098 | 3_3:+51642782 | Msa0457180:CDS |
| TCATCATCGTTAATCACAAT+TGG | 0.407508 | 3_3:-51642747 | None:intergenic |
| AGAGAGTTAGAGCTGTTTGT+TGG | 0.416562 | 3_3:+51641976 | Msa0457180:intron |
| TGTTAAATTTCAAGAGTTCC+AGG | 0.422642 | 3_3:+51642099 | Msa0457180:CDS |
| ACATAAGATGTTACATGGTA+AGG | 0.425116 | 3_3:-51642514 | None:intergenic |
| CAACTAGAAGTGCTTGTTGA+TGG | 0.433969 | 3_3:+51642382 | Msa0457180:CDS |
| TAAGGAAGATTCTGAAATGA+AGG | 0.442909 | 3_3:+51641791 | Msa0457180:CDS |
| GCATGCATGCCTTAAGAAGT+TGG | 0.444619 | 3_3:+51642838 | Msa0457180:CDS |
| TGATGAGGACGAGGAGGAGG+AGG | 0.461136 | 3_3:+51642779 | Msa0457180:CDS |
| ACAAGGTTCACTGCAGAAAT+CGG | 0.464428 | 3_3:-51642475 | None:intergenic |
| ATGTTGATATGATAGTTATC+AGG | 0.464835 | 3_3:+51641700 | None:intergenic |
| TGATGATGAGGACGAGGAGG+AGG | 0.470751 | 3_3:+51642776 | Msa0457180:CDS |
| TTGCTTAGAGTATTTCCCTT+AGG | 0.472524 | 3_3:-51642277 | None:intergenic |
| GTTATATCAGGGGAGGCCTA+AGG | 0.479297 | 3_3:+51642261 | Msa0457180:intron |
| AACTAGAAGTGCTTGTTGAT+GGG | 0.480143 | 3_3:+51642383 | Msa0457180:CDS |
| GGTCAGCAGTTGTTGGTACA+AGG | 0.494932 | 3_3:-51642492 | None:intergenic |
| CATGCATGCCTTAAGAAGTT+GGG | 0.518065 | 3_3:+51642839 | Msa0457180:CDS |
| GGACTGGCTGCATCTCTCCC+AGG | 0.526741 | 3_3:-51642726 | None:intergenic |
| ACTTCTTGATTCTGGTTGAG+AGG | 0.533490 | 3_3:-51642409 | None:intergenic |
| AAGAAGGTTGGATTTAAAGG+TGG | 0.540528 | 3_3:+51642647 | Msa0457180:CDS |
| CATAAGATGTTACATGGTAA+GGG | 0.543184 | 3_3:-51642513 | None:intergenic |
| CTTCAAATTCAGTATCGGAA+TGG | 0.545779 | 3_3:+51641863 | Msa0457180:CDS |
| ATCGTTAATCACAATTGGAC+TGG | 0.547319 | 3_3:-51642742 | None:intergenic |
| TGGATTTAAAGGTGGTGAGG+AGG | 0.548100 | 3_3:+51642655 | Msa0457180:CDS |
| TCAAGAGTTCCAGGTCTAAG+TGG | 0.550516 | 3_3:+51642108 | Msa0457180:CDS |
| AAAGACTTCAAATTCAGTAT+CGG | 0.560509 | 3_3:+51641858 | Msa0457180:CDS |
| ACTAGAAGTGCTTGTTGATG+GGG | 0.564459 | 3_3:+51642384 | Msa0457180:CDS |
| TTATATCAGGGGAGGCCTAA+GGG | 0.564632 | 3_3:+51642262 | Msa0457180:intron |
| ATCTGCCGATGACGATATGT+TGG | 0.564735 | 3_3:+51642432 | Msa0457180:CDS |
| GAGTTAAATGATCCGAAAGT+TGG | 0.567736 | 3_3:+51642810 | Msa0457180:CDS |
| TTCCTTAATCCACTTAGACC+TGG | 0.569538 | 3_3:-51642117 | None:intergenic |
| TTTCGCCAACATATCGTCAT+CGG | 0.574686 | 3_3:-51642437 | None:intergenic |
| GGTTGGATTTAAAGGTGGTG+AGG | 0.580205 | 3_3:+51642652 | Msa0457180:CDS |
| AGACTAATACATTTAGGGTG+AGG | 0.581685 | 3_3:+51642045 | Msa0457180:CDS |
| AAGAAGCACAGTGTGTGGAA+TGG | 0.582218 | 3_3:+51641731 | Msa0457180:CDS |
| CCTAATCAAAGCACGAGGAG+TGG | 0.590323 | 3_3:-51642890 | None:intergenic |
| CTACATCCGATGCATACTTG+TGG | 0.590463 | 3_3:+51642071 | Msa0457180:CDS |
| TGGTAAGGGTCAGCAGTTGT+TGG | 0.600697 | 3_3:-51642499 | None:intergenic |
| ACCATTCCACAAGTATGCAT+CGG | 0.606989 | 3_3:-51642077 | None:intergenic |
| AAGGAAGATTCTGAAATGAA+GGG | 0.614609 | 3_3:+51641792 | Msa0457180:CDS |
| CAATGTTAAACCAAATGAAG+CGG | 0.616971 | 3_3:+51642297 | Msa0457180:CDS |
| CATGCCTTAAGAAGTTGGGA+TGG | 0.618854 | 3_3:+51642843 | Msa0457180:CDS |
| ATACTAAGAAGCACAGTGTG+TGG | 0.621664 | 3_3:+51641726 | Msa0457180:CDS |
| CGATGCATGTTATAAGAAGA+CGG | 0.626206 | 3_3:+51642342 | Msa0457180:CDS |
| TCCGATGCATACTTGTGGAA+TGG | 0.644401 | 3_3:+51642076 | Msa0457180:CDS |
| TAGTAATAGATTGAGAACCT+TGG | 0.663166 | 3_3:+51642680 | Msa0457180:CDS |
| TGATGATGATGAGGACGAGG+AGG | 0.696764 | 3_3:+51642773 | Msa0457180:CDS |
| AAAGTCCTAATCAAAGCACG+AGG | 0.735501 | 3_3:-51642895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTAGTTACTTAATAA+TGG | + | chr3_3:51642563-51642582 | Msa0457180:intron | 15.0% |
| !! | AATTCTTAGTTACTTAATAA+TGG | + | chr3_3:51642563-51642582 | Msa0457180:intron | 15.0% |
| !! | AAAATAAAATTTACCAGGAA+TGG | + | chr3_3:51641948-51641967 | Msa0457180:intron | 20.0% |
| !!! | AAACATTGTATGAACATTTT+TGG | - | chr3_3:51642007-51642026 | None:intergenic | 20.0% |
| !! | GAAAAAGACTAATACATTTA+GGG | + | chr3_3:51642040-51642059 | Msa0457180:CDS | 20.0% |
| !! | AAAATAAAATTTACCAGGAA+TGG | + | chr3_3:51641948-51641967 | Msa0457180:intron | 20.0% |
| !!! | AAACATTGTATGAACATTTT+TGG | - | chr3_3:51642007-51642026 | None:intergenic | 20.0% |
| !! | GAAAAAGACTAATACATTTA+GGG | + | chr3_3:51642040-51642059 | Msa0457180:CDS | 20.0% |
| ! | AAAGACTTCAAATTCAGTAT+CGG | + | chr3_3:51641858-51641877 | Msa0457180:CDS | 25.0% |
| ! | GCAGAAAAATAAAATTTACC+AGG | + | chr3_3:51641943-51641962 | Msa0457180:intron | 25.0% |
| ! | CGAAAAAGACTAATACATTT+AGG | + | chr3_3:51642039-51642058 | Msa0457180:CDS | 25.0% |
| ! | ATCAATCAAGAACTAAAAAG+AGG | + | chr3_3:51642158-51642177 | Msa0457180:CDS | 25.0% |
| ! | TCAATCAAGAACTAAAAAGA+GGG | + | chr3_3:51642159-51642178 | Msa0457180:CDS | 25.0% |
| !!! | GTTCTTTTTGTTTTTGTGTT+TGG | + | chr3_3:51642214-51642233 | Msa0457180:intron | 25.0% |
| !!! | CTAATGTGTTTGTTATATCA+GGG | + | chr3_3:51642250-51642269 | Msa0457180:intron | 25.0% |
| !!! | TAATGTGTTTGTTATATCAG+GGG | + | chr3_3:51642251-51642270 | Msa0457180:intron | 25.0% |
| ! | GAAAGAAAAAAGTTACAAGA+AGG | + | chr3_3:51642631-51642650 | Msa0457180:CDS | 25.0% |
| ! | AAAGACTTCAAATTCAGTAT+CGG | + | chr3_3:51641858-51641877 | Msa0457180:CDS | 25.0% |
| ! | GCAGAAAAATAAAATTTACC+AGG | + | chr3_3:51641943-51641962 | Msa0457180:intron | 25.0% |
| ! | CGAAAAAGACTAATACATTT+AGG | + | chr3_3:51642039-51642058 | Msa0457180:CDS | 25.0% |
| ! | ATCAATCAAGAACTAAAAAG+AGG | + | chr3_3:51642158-51642177 | Msa0457180:CDS | 25.0% |
| ! | TCAATCAAGAACTAAAAAGA+GGG | + | chr3_3:51642159-51642178 | Msa0457180:CDS | 25.0% |
| !!! | GTTCTTTTTGTTTTTGTGTT+TGG | + | chr3_3:51642214-51642233 | Msa0457180:intron | 25.0% |
| !!! | CTAATGTGTTTGTTATATCA+GGG | + | chr3_3:51642250-51642269 | Msa0457180:intron | 25.0% |
| !!! | TAATGTGTTTGTTATATCAG+GGG | + | chr3_3:51642251-51642270 | Msa0457180:intron | 25.0% |
| ! | GAAAGAAAAAAGTTACAAGA+AGG | + | chr3_3:51642631-51642650 | Msa0457180:CDS | 25.0% |
| !! | TAAGGAAGATTCTGAAATGA+AGG | + | chr3_3:51641791-51641810 | Msa0457180:CDS | 30.0% |
| !! | AAGGAAGATTCTGAAATGAA+GGG | + | chr3_3:51641792-51641811 | Msa0457180:CDS | 30.0% |
| ! | GCATCGAACTTATCATATTT+TGG | - | chr3_3:51641822-51641841 | None:intergenic | 30.0% |
| ! | GATACTGAATTTGAAGTCTT+TGG | - | chr3_3:51641859-51641878 | None:intergenic | 30.0% |
| TATTTCTCGACACCAATTTA+AGG | + | chr3_3:51641890-51641909 | Msa0457180:CDS | 30.0% | |
| TGTTAAATTTCAAGAGTTCC+AGG | + | chr3_3:51642099-51642118 | Msa0457180:CDS | 30.0% | |
| !! | GCTAATGTGTTTGTTATATC+AGG | + | chr3_3:51642249-51642268 | Msa0457180:intron | 30.0% |
| CAATGTTAAACCAAATGAAG+CGG | + | chr3_3:51642297-51642316 | Msa0457180:CDS | 30.0% | |
| CATAAGATGTTACATGGTAA+GGG | - | chr3_3:51642516-51642535 | None:intergenic | 30.0% | |
| ACATAAGATGTTACATGGTA+AGG | - | chr3_3:51642517-51642536 | None:intergenic | 30.0% | |
| GAAAAAAGTTACAAGAAGGT+TGG | + | chr3_3:51642635-51642654 | Msa0457180:CDS | 30.0% | |
| TACAAGAAGGTTGGATTTAA+AGG | + | chr3_3:51642644-51642663 | Msa0457180:CDS | 30.0% | |
| TAGTAATAGATTGAGAACCT+TGG | + | chr3_3:51642680-51642699 | Msa0457180:CDS | 30.0% | |
| !!! | ACCATCATACACTTTTTTGA+AGG | - | chr3_3:51642706-51642725 | None:intergenic | 30.0% |
| TCATCATCGTTAATCACAAT+TGG | - | chr3_3:51642750-51642769 | None:intergenic | 30.0% | |
| !!! | GTGGAATTTTTTCAAGCTTT+CGG | - | chr3_3:51642874-51642893 | None:intergenic | 30.0% |
| !! | TAAGGAAGATTCTGAAATGA+AGG | + | chr3_3:51641791-51641810 | Msa0457180:CDS | 30.0% |
| !! | AAGGAAGATTCTGAAATGAA+GGG | + | chr3_3:51641792-51641811 | Msa0457180:CDS | 30.0% |
| ! | GCATCGAACTTATCATATTT+TGG | - | chr3_3:51641822-51641841 | None:intergenic | 30.0% |
| ! | GATACTGAATTTGAAGTCTT+TGG | - | chr3_3:51641859-51641878 | None:intergenic | 30.0% |
| TATTTCTCGACACCAATTTA+AGG | + | chr3_3:51641890-51641909 | Msa0457180:CDS | 30.0% | |
| TGTTAAATTTCAAGAGTTCC+AGG | + | chr3_3:51642099-51642118 | Msa0457180:CDS | 30.0% | |
| !! | GCTAATGTGTTTGTTATATC+AGG | + | chr3_3:51642249-51642268 | Msa0457180:intron | 30.0% |
| CAATGTTAAACCAAATGAAG+CGG | + | chr3_3:51642297-51642316 | Msa0457180:CDS | 30.0% | |
| CATAAGATGTTACATGGTAA+GGG | - | chr3_3:51642516-51642535 | None:intergenic | 30.0% | |
| ACATAAGATGTTACATGGTA+AGG | - | chr3_3:51642517-51642536 | None:intergenic | 30.0% | |
| GAAAAAAGTTACAAGAAGGT+TGG | + | chr3_3:51642635-51642654 | Msa0457180:CDS | 30.0% | |
| TACAAGAAGGTTGGATTTAA+AGG | + | chr3_3:51642644-51642663 | Msa0457180:CDS | 30.0% | |
| TAGTAATAGATTGAGAACCT+TGG | + | chr3_3:51642680-51642699 | Msa0457180:CDS | 30.0% | |
| !!! | ACCATCATACACTTTTTTGA+AGG | - | chr3_3:51642706-51642725 | None:intergenic | 30.0% |
| TCATCATCGTTAATCACAAT+TGG | - | chr3_3:51642750-51642769 | None:intergenic | 30.0% | |
| !!! | GTGGAATTTTTTCAAGCTTT+CGG | - | chr3_3:51642874-51642893 | None:intergenic | 30.0% |
| CGAGAAGTTGTCAAATGAAT+TGG | + | chr3_3:51641758-51641777 | Msa0457180:CDS | 35.0% | |
| TGAATTGGACAATGCATCTA+AGG | + | chr3_3:51641773-51641792 | Msa0457180:CDS | 35.0% | |
| ! | CTTCAAATTCAGTATCGGAA+TGG | + | chr3_3:51641863-51641882 | Msa0457180:CDS | 35.0% |
| CGAGAGCTCAATGTATTAAA+TGG | + | chr3_3:51641921-51641940 | Msa0457180:intron | 35.0% | |
| ! | AGACTAATACATTTAGGGTG+AGG | + | chr3_3:51642045-51642064 | Msa0457180:CDS | 35.0% |
| ! | TTGCTTAGAGTATTTCCCTT+AGG | - | chr3_3:51642280-51642299 | None:intergenic | 35.0% |
| CGATGCATGTTATAAGAAGA+CGG | + | chr3_3:51642342-51642361 | Msa0457180:CDS | 35.0% | |
| !! | AACTAGAAGTGCTTGTTGAT+GGG | + | chr3_3:51642383-51642402 | Msa0457180:CDS | 35.0% |
| GACTCACATAAGATGTTACA+TGG | - | chr3_3:51642522-51642541 | None:intergenic | 35.0% | |
| TTTCCTACAATATCCAAGAG+AGG | - | chr3_3:51642605-51642624 | None:intergenic | 35.0% | |
| AAGAAGGTTGGATTTAAAGG+TGG | + | chr3_3:51642647-51642666 | Msa0457180:CDS | 35.0% | |
| !!! | ATACACTTTTTTGAAGGCCA+AGG | - | chr3_3:51642700-51642719 | None:intergenic | 35.0% |
| ! | GCCTTCAAAAAAGTGTATGA+TGG | + | chr3_3:51642702-51642721 | Msa0457180:CDS | 35.0% |
| ! | AAAAAAGTGTATGATGGTCC+TGG | + | chr3_3:51642708-51642727 | Msa0457180:CDS | 35.0% |
| ! | AAAAAGTGTATGATGGTCCT+GGG | + | chr3_3:51642709-51642728 | Msa0457180:CDS | 35.0% |
| ATCGTTAATCACAATTGGAC+TGG | - | chr3_3:51642745-51642764 | None:intergenic | 35.0% | |
| ! | TGATGATGATGATGATGATG+AGG | + | chr3_3:51642764-51642783 | Msa0457180:CDS | 35.0% |
| GAGTTAAATGATCCGAAAGT+TGG | + | chr3_3:51642810-51642829 | Msa0457180:CDS | 35.0% | |
| AATTCCATCCCAACTTCTTA+AGG | - | chr3_3:51642850-51642869 | None:intergenic | 35.0% | |
| CGAGAAGTTGTCAAATGAAT+TGG | + | chr3_3:51641758-51641777 | Msa0457180:CDS | 35.0% | |
| TGAATTGGACAATGCATCTA+AGG | + | chr3_3:51641773-51641792 | Msa0457180:CDS | 35.0% | |
| ! | CTTCAAATTCAGTATCGGAA+TGG | + | chr3_3:51641863-51641882 | Msa0457180:CDS | 35.0% |
| CGAGAGCTCAATGTATTAAA+TGG | + | chr3_3:51641921-51641940 | Msa0457180:intron | 35.0% | |
| ! | AGACTAATACATTTAGGGTG+AGG | + | chr3_3:51642045-51642064 | Msa0457180:CDS | 35.0% |
| ! | TTGCTTAGAGTATTTCCCTT+AGG | - | chr3_3:51642280-51642299 | None:intergenic | 35.0% |
| CGATGCATGTTATAAGAAGA+CGG | + | chr3_3:51642342-51642361 | Msa0457180:CDS | 35.0% | |
| !! | AACTAGAAGTGCTTGTTGAT+GGG | + | chr3_3:51642383-51642402 | Msa0457180:CDS | 35.0% |
| GACTCACATAAGATGTTACA+TGG | - | chr3_3:51642522-51642541 | None:intergenic | 35.0% | |
| TTTCCTACAATATCCAAGAG+AGG | - | chr3_3:51642605-51642624 | None:intergenic | 35.0% | |
| AAGAAGGTTGGATTTAAAGG+TGG | + | chr3_3:51642647-51642666 | Msa0457180:CDS | 35.0% | |
| !!! | ATACACTTTTTTGAAGGCCA+AGG | - | chr3_3:51642700-51642719 | None:intergenic | 35.0% |
| ! | GCCTTCAAAAAAGTGTATGA+TGG | + | chr3_3:51642702-51642721 | Msa0457180:CDS | 35.0% |
| ! | AAAAAAGTGTATGATGGTCC+TGG | + | chr3_3:51642708-51642727 | Msa0457180:CDS | 35.0% |
| ! | AAAAAGTGTATGATGGTCCT+GGG | + | chr3_3:51642709-51642728 | Msa0457180:CDS | 35.0% |
| ATCGTTAATCACAATTGGAC+TGG | - | chr3_3:51642745-51642764 | None:intergenic | 35.0% | |
| ! | TGATGATGATGATGATGATG+AGG | + | chr3_3:51642764-51642783 | Msa0457180:CDS | 35.0% |
| GAGTTAAATGATCCGAAAGT+TGG | + | chr3_3:51642810-51642829 | Msa0457180:CDS | 35.0% | |
| AATTCCATCCCAACTTCTTA+AGG | - | chr3_3:51642850-51642869 | None:intergenic | 35.0% | |
| ! | ATACTAAGAAGCACAGTGTG+TGG | + | chr3_3:51641726-51641745 | Msa0457180:CDS | 40.0% |
| ! | AACTCTCTTTTTGCCATTCC+TGG | - | chr3_3:51641964-51641983 | None:intergenic | 40.0% |
| AGAGAGTTAGAGCTGTTTGT+TGG | + | chr3_3:51641976-51641995 | Msa0457180:intron | 40.0% | |
| ACCATTCCACAAGTATGCAT+CGG | - | chr3_3:51642080-51642099 | None:intergenic | 40.0% | |
| !! | TTCCAGGTCTAAGTGGATTA+AGG | + | chr3_3:51642115-51642134 | Msa0457180:CDS | 40.0% |
| TTCCTTAATCCACTTAGACC+TGG | - | chr3_3:51642120-51642139 | None:intergenic | 40.0% | |
| !! | TGTGTTTGTTATATCAGGGG+AGG | + | chr3_3:51642254-51642273 | Msa0457180:intron | 40.0% |
| ! | TTTCTCTTTGCCGCTTCATT+TGG | - | chr3_3:51642310-51642329 | None:intergenic | 40.0% |
| !! | CAACTAGAAGTGCTTGTTGA+TGG | + | chr3_3:51642382-51642401 | Msa0457180:CDS | 40.0% |
| !! | ACTAGAAGTGCTTGTTGATG+GGG | + | chr3_3:51642384-51642403 | Msa0457180:CDS | 40.0% |
| ! | ACTTCTTGATTCTGGTTGAG+AGG | - | chr3_3:51642412-51642431 | None:intergenic | 40.0% |
| TTTCGCCAACATATCGTCAT+CGG | - | chr3_3:51642440-51642459 | None:intergenic | 40.0% | |
| ACAAGGTTCACTGCAGAAAT+CGG | - | chr3_3:51642478-51642497 | None:intergenic | 40.0% | |
| TGCATGCAACTTCCAACTTT+CGG | - | chr3_3:51642825-51642844 | None:intergenic | 40.0% | |
| CATGCATGCCTTAAGAAGTT+GGG | + | chr3_3:51642839-51642858 | Msa0457180:CDS | 40.0% | |
| ! | ATACTAAGAAGCACAGTGTG+TGG | + | chr3_3:51641726-51641745 | Msa0457180:CDS | 40.0% |
| ! | AACTCTCTTTTTGCCATTCC+TGG | - | chr3_3:51641964-51641983 | None:intergenic | 40.0% |
| AGAGAGTTAGAGCTGTTTGT+TGG | + | chr3_3:51641976-51641995 | Msa0457180:intron | 40.0% | |
| ACCATTCCACAAGTATGCAT+CGG | - | chr3_3:51642080-51642099 | None:intergenic | 40.0% | |
| !! | TTCCAGGTCTAAGTGGATTA+AGG | + | chr3_3:51642115-51642134 | Msa0457180:CDS | 40.0% |
| TTCCTTAATCCACTTAGACC+TGG | - | chr3_3:51642120-51642139 | None:intergenic | 40.0% | |
| !! | TGTGTTTGTTATATCAGGGG+AGG | + | chr3_3:51642254-51642273 | Msa0457180:intron | 40.0% |
| ! | TTTCTCTTTGCCGCTTCATT+TGG | - | chr3_3:51642310-51642329 | None:intergenic | 40.0% |
| !! | CAACTAGAAGTGCTTGTTGA+TGG | + | chr3_3:51642382-51642401 | Msa0457180:CDS | 40.0% |
| !! | ACTAGAAGTGCTTGTTGATG+GGG | + | chr3_3:51642384-51642403 | Msa0457180:CDS | 40.0% |
| ! | ACTTCTTGATTCTGGTTGAG+AGG | - | chr3_3:51642412-51642431 | None:intergenic | 40.0% |
| TTTCGCCAACATATCGTCAT+CGG | - | chr3_3:51642440-51642459 | None:intergenic | 40.0% | |
| ACAAGGTTCACTGCAGAAAT+CGG | - | chr3_3:51642478-51642497 | None:intergenic | 40.0% | |
| TGCATGCAACTTCCAACTTT+CGG | - | chr3_3:51642825-51642844 | None:intergenic | 40.0% | |
| CATGCATGCCTTAAGAAGTT+GGG | + | chr3_3:51642839-51642858 | Msa0457180:CDS | 40.0% | |
| ! | AAGAAGCACAGTGTGTGGAA+TGG | + | chr3_3:51641731-51641750 | Msa0457180:CDS | 45.0% |
| CTCGAACAGCGTCCTTAAAT+TGG | - | chr3_3:51641905-51641924 | None:intergenic | 45.0% | |
| CTACATCCGATGCATACTTG+TGG | + | chr3_3:51642071-51642090 | Msa0457180:CDS | 45.0% | |
| TCCGATGCATACTTGTGGAA+TGG | + | chr3_3:51642076-51642095 | Msa0457180:CDS | 45.0% | |
| TCAAGAGTTCCAGGTCTAAG+TGG | + | chr3_3:51642108-51642127 | Msa0457180:CDS | 45.0% | |
| TTATATCAGGGGAGGCCTAA+GGG | + | chr3_3:51642262-51642281 | Msa0457180:intron | 45.0% | |
| CGGCAGATACTTCTTGATTC+TGG | - | chr3_3:51642420-51642439 | None:intergenic | 45.0% | |
| ATCTGCCGATGACGATATGT+TGG | + | chr3_3:51642432-51642451 | Msa0457180:CDS | 45.0% | |
| TTATGTAACGCCACCTCTCT+TGG | + | chr3_3:51642589-51642608 | Msa0457180:intron | 45.0% | |
| CCTACAATATCCAAGAGAGG+TGG | - | chr3_3:51642602-51642621 | None:intergenic | 45.0% | |
| CCACCTCTCTTGGATATTGT+AGG | + | chr3_3:51642599-51642618 | Msa0457180:intron | 45.0% | |
| GGTTGGATTTAAAGGTGGTG+AGG | + | chr3_3:51642652-51642671 | Msa0457180:CDS | 45.0% | |
| TGGATTTAAAGGTGGTGAGG+AGG | + | chr3_3:51642655-51642674 | Msa0457180:CDS | 45.0% | |
| ! | TGATGATGATGATGAGGACG+AGG | + | chr3_3:51642770-51642789 | Msa0457180:CDS | 45.0% |
| GCATGCATGCCTTAAGAAGT+TGG | + | chr3_3:51642838-51642857 | Msa0457180:CDS | 45.0% | |
| CATGCCTTAAGAAGTTGGGA+TGG | + | chr3_3:51642843-51642862 | Msa0457180:CDS | 45.0% | |
| ! | AAGAAGCACAGTGTGTGGAA+TGG | + | chr3_3:51641731-51641750 | Msa0457180:CDS | 45.0% |
| CTCGAACAGCGTCCTTAAAT+TGG | - | chr3_3:51641905-51641924 | None:intergenic | 45.0% | |
| CTACATCCGATGCATACTTG+TGG | + | chr3_3:51642071-51642090 | Msa0457180:CDS | 45.0% | |
| TCCGATGCATACTTGTGGAA+TGG | + | chr3_3:51642076-51642095 | Msa0457180:CDS | 45.0% | |
| TCAAGAGTTCCAGGTCTAAG+TGG | + | chr3_3:51642108-51642127 | Msa0457180:CDS | 45.0% | |
| TTATATCAGGGGAGGCCTAA+GGG | + | chr3_3:51642262-51642281 | Msa0457180:intron | 45.0% | |
| CGGCAGATACTTCTTGATTC+TGG | - | chr3_3:51642420-51642439 | None:intergenic | 45.0% | |
| ATCTGCCGATGACGATATGT+TGG | + | chr3_3:51642432-51642451 | Msa0457180:CDS | 45.0% | |
| TTATGTAACGCCACCTCTCT+TGG | + | chr3_3:51642589-51642608 | Msa0457180:intron | 45.0% | |
| CCTACAATATCCAAGAGAGG+TGG | - | chr3_3:51642602-51642621 | None:intergenic | 45.0% | |
| CCACCTCTCTTGGATATTGT+AGG | + | chr3_3:51642599-51642618 | Msa0457180:intron | 45.0% | |
| GGTTGGATTTAAAGGTGGTG+AGG | + | chr3_3:51642652-51642671 | Msa0457180:CDS | 45.0% | |
| TGGATTTAAAGGTGGTGAGG+AGG | + | chr3_3:51642655-51642674 | Msa0457180:CDS | 45.0% | |
| ! | TGATGATGATGATGAGGACG+AGG | + | chr3_3:51642770-51642789 | Msa0457180:CDS | 45.0% |
| GCATGCATGCCTTAAGAAGT+TGG | + | chr3_3:51642838-51642857 | Msa0457180:CDS | 45.0% | |
| CATGCCTTAAGAAGTTGGGA+TGG | + | chr3_3:51642843-51642862 | Msa0457180:CDS | 45.0% | |
| GTTATATCAGGGGAGGCCTA+AGG | + | chr3_3:51642261-51642280 | Msa0457180:intron | 50.0% | |
| GGTCAGCAGTTGTTGGTACA+AGG | - | chr3_3:51642495-51642514 | None:intergenic | 50.0% | |
| TGGTAAGGGTCAGCAGTTGT+TGG | - | chr3_3:51642502-51642521 | None:intergenic | 50.0% | |
| ! | TGATGATGATGAGGACGAGG+AGG | + | chr3_3:51642773-51642792 | Msa0457180:CDS | 50.0% |
| GTTATATCAGGGGAGGCCTA+AGG | + | chr3_3:51642261-51642280 | Msa0457180:intron | 50.0% | |
| GGTCAGCAGTTGTTGGTACA+AGG | - | chr3_3:51642495-51642514 | None:intergenic | 50.0% | |
| TGGTAAGGGTCAGCAGTTGT+TGG | - | chr3_3:51642502-51642521 | None:intergenic | 50.0% | |
| ! | TGATGATGATGAGGACGAGG+AGG | + | chr3_3:51642773-51642792 | Msa0457180:CDS | 50.0% |
| ! | TGATGATGAGGACGAGGAGG+AGG | + | chr3_3:51642776-51642795 | Msa0457180:CDS | 55.0% |
| ! | TGATGATGAGGACGAGGAGG+AGG | + | chr3_3:51642776-51642795 | Msa0457180:CDS | 55.0% |
| TGATGAGGACGAGGAGGAGG+AGG | + | chr3_3:51642779-51642798 | Msa0457180:CDS | 60.0% | |
| TGATGAGGACGAGGAGGAGG+AGG | + | chr3_3:51642779-51642798 | Msa0457180:CDS | 60.0% | |
| !! | GGACTGGCTGCATCTCTCCC+AGG | - | chr3_3:51642729-51642748 | None:intergenic | 65.0% |
| TGAGGACGAGGAGGAGGAGG+AGG | + | chr3_3:51642782-51642801 | Msa0457180:CDS | 65.0% | |
| !! | GGACTGGCTGCATCTCTCCC+AGG | - | chr3_3:51642729-51642748 | None:intergenic | 65.0% |
| TGAGGACGAGGAGGAGGAGG+AGG | + | chr3_3:51642782-51642801 | Msa0457180:CDS | 65.0% | |
| GGACGAGGAGGAGGAGGAGG+AGG | + | chr3_3:51642785-51642804 | Msa0457180:CDS | 70.0% | |
| CGAGGAGGAGGAGGAGGAGG+AGG | + | chr3_3:51642788-51642807 | Msa0457180:CDS | 70.0% | |
| GGACGAGGAGGAGGAGGAGG+AGG | + | chr3_3:51642785-51642804 | Msa0457180:CDS | 70.0% | |
| CGAGGAGGAGGAGGAGGAGG+AGG | + | chr3_3:51642788-51642807 | Msa0457180:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 51641715 | 51642908 | 51641715 | ID=Msa0457180;Name=Msa0457180 |
| chr3_3 | mRNA | 51641715 | 51642908 | 51641715 | ID=Msa0457180-mRNA-1;Parent=Msa0457180;Name=Msa0457180-mRNA-1;_AED=0.23;_eAED=0.45;_QI=8|0|0|1|0.33|0.25|4|0|316 |
| chr3_3 | exon | 51641715 | 51641932 | 51641715 | ID=Msa0457180-mRNA-1:exon:9928;Parent=Msa0457180-mRNA-1 |
| chr3_3 | exon | 51641978 | 51642180 | 51641978 | ID=Msa0457180-mRNA-1:exon:9929;Parent=Msa0457180-mRNA-1 |
| chr3_3 | exon | 51642276 | 51642522 | 51642276 | ID=Msa0457180-mRNA-1:exon:9930;Parent=Msa0457180-mRNA-1 |
| chr3_3 | exon | 51642621 | 51642908 | 51642621 | ID=Msa0457180-mRNA-1:exon:9931;Parent=Msa0457180-mRNA-1 |
| chr3_3 | five_prime_UTR | 51641715 | 51641722 | 51641715 | ID=Msa0457180-mRNA-1:five_prime_utr;Parent=Msa0457180-mRNA-1 |
| chr3_3 | CDS | 51641723 | 51641932 | 51641723 | ID=Msa0457180-mRNA-1:cds;Parent=Msa0457180-mRNA-1 |
| chr3_3 | CDS | 51641978 | 51642180 | 51641978 | ID=Msa0457180-mRNA-1:cds;Parent=Msa0457180-mRNA-1 |
| chr3_3 | CDS | 51642276 | 51642522 | 51642276 | ID=Msa0457180-mRNA-1:cds;Parent=Msa0457180-mRNA-1 |
| chr3_3 | CDS | 51642621 | 51642908 | 51642621 | ID=Msa0457180-mRNA-1:cds;Parent=Msa0457180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
