AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0365190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0365190 MtrunA17_Chr1g0213971 97.541 244 4 1 2 245 3 244 2.82e-173 476
Msa0365190 MtrunA17_Chr7g0270991 63.590 195 68 1 50 244 68 259 2.55e-88 262
Msa0365190 MtrunA17_Chr1g0193711 61.905 210 72 3 40 244 43 249 1.47e-86 257
Msa0365190 MtrunA17_Chr3g0104751 61.957 184 59 3 68 244 24 203 1.23e-72 220
Msa0365190 MtrunA17_Chr3g0113441 55.288 208 68 5 56 242 28 231 2.87e-68 210
Msa0365190 MtrunA17_Chr3g0145501 61.404 171 55 3 79 242 13 179 3.67e-68 208
Msa0365190 MtrunA17_Chr7g0274841 59.649 171 58 3 79 242 5 171 9.60e-67 204
Msa0365190 MtrunA17_Chr4g0038431 60.920 174 57 3 76 242 2 171 1.07e-66 204
Msa0365190 MtrunA17_Chr8g0374621 57.558 172 62 2 79 242 5 173 1.99e-61 196
Msa0365190 MtrunA17_Chr4g0037281 49.485 194 89 2 57 243 25 216 1.58e-58 185
Msa0365190 MtrunA17_Chr4g0045321 54.913 173 67 2 79 243 5 174 3.14e-58 188
Msa0365190 MtrunA17_Chr8g0353571 52.688 186 79 3 63 242 3 185 8.09e-58 182
Msa0365190 MtrunA17_Chr7g0260441 56.322 174 64 3 80 245 9 178 3.84e-55 187
Msa0365190 MtrunA17_Chr2g0321111 54.167 144 61 3 94 236 470 609 1.34e-42 152
Msa0365190 MtrunA17_Chr7g0266721 49.306 144 68 4 94 236 18 157 2.66e-39 134
Msa0365190 MtrunA17_Chr3g0138061 45.930 172 79 4 80 242 12 178 4.63e-37 138
Msa0365190 MtrunA17_Chr8g0351571 47.586 145 71 4 94 237 9 149 1.73e-36 126
Msa0365190 MtrunA17_Chr3g0122871 56.667 120 24 3 138 230 1 119 1.25e-34 120
Msa0365190 MtrunA17_Chr1g0149061 47.333 150 65 4 80 220 9 153 5.87e-33 126
Msa0365190 MtrunA17_Chr5g0401141 47.222 144 71 4 95 237 354 493 5.04e-31 120
Msa0365190 MtrunA17_Chr2g0288371 43.972 141 70 7 95 231 22 157 1.93e-21 92.8
Msa0365190 MtrunA17_Chr6g0484281 39.869 153 77 6 94 236 9 156 1.63e-19 87.4
Msa0365190 MtrunA17_Chr8g0357591 39.216 153 78 6 94 236 9 156 3.35e-18 83.6
Msa0365190 MtrunA17_Chr2g0305071 27.869 244 114 10 64 245 44 287 2.16e-16 76.6
Msa0365190 MtrunA17_Chr1g0199071 35.811 148 72 7 95 236 89 219 2.38e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0365190 AT5G13120.2 83.237 173 29 0 73 245 81 253 1.17e-111 321
Msa0365190 AT5G13120.1 83.237 173 29 0 73 245 85 257 1.52e-111 321
Msa0365190 AT3G62030.1 66.321 193 61 2 53 244 69 258 8.32e-90 266
Msa0365190 AT3G62030.3 65.625 192 63 1 53 244 69 257 1.19e-89 266
Msa0365190 AT3G62030.2 66.321 193 61 2 53 244 122 311 4.83e-89 266
Msa0365190 AT2G29960.1 62.712 177 55 3 75 244 29 201 4.72e-72 219
Msa0365190 AT2G29960.3 62.712 177 55 3 75 244 29 201 4.72e-72 219
Msa0365190 AT5G58710.1 62.147 177 56 3 75 244 32 204 2.06e-71 217
Msa0365190 AT2G21130.1 62.573 171 53 3 79 242 6 172 1.99e-70 214
Msa0365190 AT2G16600.1 61.988 171 54 3 79 242 6 172 2.53e-69 211
Msa0365190 AT4G38740.1 60.819 171 56 3 79 242 5 171 5.61e-68 207
Msa0365190 AT3G56070.1 59.064 171 59 3 79 242 5 171 1.56e-66 204
Msa0365190 AT3G56070.2 59.064 171 59 3 79 242 5 171 1.56e-66 204
Msa0365190 AT3G55920.1 59.322 177 59 4 76 244 57 228 2.78e-65 202
Msa0365190 AT4G34870.1 60.234 171 57 3 79 242 5 171 9.10e-65 199
Msa0365190 AT2G29960.2 59.322 177 51 4 75 244 29 191 6.63e-64 197
Msa0365190 AT4G34960.1 52.128 188 80 2 63 243 32 216 2.86e-59 187
Msa0365190 AT2G15790.1 57.225 173 63 2 79 243 5 174 8.54e-59 190
Msa0365190 AT2G16600.2 57.317 164 51 3 79 242 6 150 2.06e-58 182
Msa0365190 AT2G38730.1 55.621 169 66 3 80 242 34 199 8.92e-58 182
Msa0365190 AT3G63400.2 59.412 170 57 3 80 241 9 174 3.55e-57 187
Msa0365190 AT3G63400.3 59.412 170 57 3 80 241 9 174 1.50e-55 187
Msa0365190 AT3G63400.4 59.412 170 57 3 80 241 9 174 1.50e-55 187
Msa0365190 AT3G63400.1 59.412 170 57 3 80 241 9 174 1.50e-55 187
Msa0365190 AT4G34960.2 53.846 143 56 2 63 198 32 171 6.00e-45 149
Msa0365190 AT3G44600.1 54.167 144 61 3 94 236 484 623 1.16e-42 153
Msa0365190 AT2G36130.1 47.917 144 70 4 94 236 18 157 1.01e-39 135
Msa0365190 AT1G01940.1 46.897 145 72 4 94 237 9 149 1.62e-37 129
Msa0365190 AT3G22920.1 45.714 175 72 8 79 242 5 167 1.04e-31 116
Msa0365190 AT5G67530.1 46.853 143 71 4 95 236 353 491 1.26e-31 122
Msa0365190 AT4G32420.1 41.808 177 89 4 75 242 4 175 3.09e-29 115
Msa0365190 AT4G32420.5 41.808 177 89 4 75 242 4 175 3.09e-29 115
Msa0365190 AT4G32420.3 41.808 177 89 4 75 242 4 175 3.09e-29 115
Msa0365190 AT4G32420.6 41.808 177 89 4 75 242 4 175 3.09e-29 115
Msa0365190 AT4G32420.4 43.226 155 75 3 75 220 4 154 1.01e-27 111
Msa0365190 AT4G33060.1 44.681 141 69 7 95 231 22 157 1.75e-24 101
Msa0365190 AT1G53720.2 40.789 152 77 5 94 236 9 156 1.29e-22 95.1
Msa0365190 AT1G53720.1 40.789 152 77 5 94 236 9 156 1.17e-21 93.6

Find 120 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGATTGTCACCTTCTTT+AGG 0.241303 3_1:-58968547 None:intergenic
GATCAGAGGCATGTTGTATT+TGG 0.249985 3_1:+58968455 Msa0365190:CDS
TTCATAAATCTAAATCAGTT+TGG 0.255873 3_1:+58968724 Msa0365190:three_prime_UTR
AAATGAGTTTAAGTTATTCT+AGG 0.267655 3_1:-58968803 None:intergenic
ACTGATTGTCACCTTCTTTA+GGG 0.273487 3_1:-58968546 None:intergenic
TCATAAATCTAAATCAGTTT+GGG 0.286580 3_1:+58968725 Msa0365190:three_prime_UTR
TGGAAGGCATGGACATTGTT+AGG 0.309018 3_1:+58968486 Msa0365190:CDS
CAAGGAGGAGACTTTGATAA+AGG 0.345816 3_1:+58967941 Msa0365190:CDS
AAAGTGAGGGCAGTGGAAAA+TGG 0.351843 3_1:+58967689 Msa0365190:CDS
TGTTGTATTTGGCCAAGTTT+TGG 0.352436 3_1:+58968466 Msa0365190:CDS
ATCCTTCCTTCCTTCTTGTT+CGG 0.366675 3_1:+58967398 Msa0365190:five_prime_UTR
TCCACCGGTGAGAAGGGCTT+TGG 0.377046 3_1:+58967872 Msa0365190:CDS
GTGTGGAGAAAGGGAGTTAA+TGG 0.380638 3_1:+58968957 Msa0365190:three_prime_UTR
ATCTATCTATCGCAGGGAAC+TGG 0.385423 3_1:+58968025 Msa0365190:intron
AACAAAACATGTCAAGCAAT+TGG 0.393584 3_1:-58968584 None:intergenic
CTTCCAACCAGCTTCCCAAC+TGG 0.403156 3_1:-58967788 None:intergenic
ACTGGAGGCAAAAGTATCTA+TGG 0.406648 3_1:+58968043 Msa0365190:CDS
GTTCTAGTGGGTGTGGAGAA+AGG 0.407477 3_1:+58968947 Msa0365190:three_prime_UTR
GCATCTCCGTCGGGGTGGTT+AGG 0.409454 3_1:+58967618 Msa0365190:CDS
AAAGTGGACGGCTGCCACTT+TGG 0.415677 3_1:-58967022 None:intergenic
GGAAGTTCTCAACAGTTTGC+GGG 0.417261 3_1:-58967841 None:intergenic
TGCCCTTTCCACCGGTGAGA+AGG 0.418329 3_1:+58967865 Msa0365190:CDS
TTGAGTTGAATAGATAGATT+AGG 0.424055 3_1:+58967338 Msa0365190:intron
TTCTTTGTTTCTTGCTGCTG+AGG 0.427286 3_1:+58968619 Msa0365190:three_prime_UTR
GTATTCTTTGATGTTAGTAT+TGG 0.430298 3_1:+58967761 Msa0365190:CDS
AACTGACTCCCATTGGTGTT+GGG 0.430322 3_1:-58968308 None:intergenic
GCCCTTCTCACCGGTGGAAA+GGG 0.431866 3_1:-58967867 None:intergenic
GGTGGTTAGGTCCCGAGGTG+TGG 0.434983 3_1:+58967631 Msa0365190:CDS
TGCTTAATCAGCAGTTGAGT+GGG 0.435663 3_1:+58968825 Msa0365190:three_prime_UTR
AGGATTGTGATAGGACTCTT+TGG 0.436041 3_1:+58967809 Msa0365190:CDS
TTCTAGTGGGTGTGGAGAAA+GGG 0.438917 3_1:+58968948 Msa0365190:three_prime_UTR
TTGTGTTGAAAGACTGGTAA+AGG 0.449776 3_1:+58968913 Msa0365190:three_prime_UTR
GTGGTTAGGTCCCGAGGTGT+GGG 0.453738 3_1:+58967632 Msa0365190:CDS
ACATTGGCAGACGCCGTGGC+TGG 0.454530 3_1:+58968433 Msa0365190:intron
TGGAAATCCAGTTGGGAAGC+TGG 0.456366 3_1:+58967781 Msa0365190:CDS
TGTTAGGTTGATTGAATCAC+AGG 0.461699 3_1:+58968502 Msa0365190:CDS
CTAAAAGAAGCATCTCCGTC+GGG 0.471283 3_1:+58967609 Msa0365190:CDS
AGCCCTTCTCACCGGTGGAA+AGG 0.480339 3_1:-58967868 None:intergenic
TATACATTGTGTTGAAAGAC+TGG 0.481340 3_1:+58968907 Msa0365190:three_prime_UTR
AACTTCCGTGCCCTTTCCAC+CGG 0.482955 3_1:+58967857 Msa0365190:CDS
GCCCTTTCCACCGGTGAGAA+GGG 0.484178 3_1:+58967866 Msa0365190:CDS
TGTCCATGCCTTCCAAAACT+TGG 0.486542 3_1:-58968478 None:intergenic
ATCAAGGACTTCATGATTCA+AGG 0.494593 3_1:+58967923 Msa0365190:CDS
TTTCTAATATCAATGTCTCT+TGG 0.498054 3_1:-58968780 None:intergenic
CATGCTAACAGCTCCTGGTC+CGG 0.506814 3_1:-58968273 None:intergenic
GGTATTGGCAACAACAATAC+AGG 0.515034 3_1:-58966953 None:intergenic
ATGCTGGTCCCAACACCAAT+GGG 0.515041 3_1:+58968300 Msa0365190:CDS
CACCTTCCATCGCGTCATCA+AGG 0.515078 3_1:+58967907 Msa0365190:CDS
GTTAGTATTGGAAATCCAGT+TGG 0.515418 3_1:+58967773 Msa0365190:CDS
CCAGTGTCTCATACCGGACC+AGG 0.515423 3_1:+58968260 Msa0365190:intron
GGGGTTGAGGTGTGCACAGT+TGG 0.519233 3_1:+58968997 Msa0365190:intron
CTGATTGTCACCTTCTTTAG+GGG 0.526723 3_1:-58968545 None:intergenic
CGGAAGTTCTCAACAGTTTG+CGG 0.530427 3_1:-58967842 None:intergenic
GAAACTAATTTGTGTGGTGT+GGG 0.532852 3_1:-58966982 None:intergenic
TTTGCCATGCTAACAGCTCC+TGG 0.534982 3_1:-58968278 None:intergenic
TGTGTTGAAAGACTGGTAAA+GGG 0.536640 3_1:+58968914 Msa0365190:three_prime_UTR
GCTGTTAGCATGGCAAATGC+TGG 0.538859 3_1:+58968284 Msa0365190:CDS
TCGCGCGTGCGTTAAAATTG+AGG 0.540242 3_1:-58967374 None:intergenic
TAGTTTCACACCCACACCTC+GGG 0.541866 3_1:-58967642 None:intergenic
TTCGGTGTTTAACCAACCGA+TGG 0.542282 3_1:+58967416 Msa0365190:exon
AGCAATTGTTCTAGTGGGTG+TGG 0.544753 3_1:+58968940 Msa0365190:three_prime_UTR
AATGCTGGTCCCAACACCAA+TGG 0.549301 3_1:+58968299 Msa0365190:CDS
AGACGCCGTGGCTGGATCAG+AGG 0.549918 3_1:+58968441 Msa0365190:intron
GGCCGGCGCGAGCAGTTAGA+CGG 0.550704 3_1:-58967053 None:intergenic
CAGTTGGGAAGCTGGTTGGA+AGG 0.554098 3_1:+58967789 Msa0365190:CDS
TTAGTATTGGAAATCCAGTT+GGG 0.555401 3_1:+58967774 Msa0365190:CDS
CTTGATGACGCGATGGAAGG+TGG 0.555450 3_1:-58967906 None:intergenic
CTGGTTGGAAGGATTGTGAT+AGG 0.560590 3_1:+58967800 Msa0365190:CDS
AAACTGACTCCCATTGGTGT+TGG 0.561474 3_1:-58968309 None:intergenic
TGGTGATCGTCCCCTAAAGA+AGG 0.561937 3_1:+58968535 Msa0365190:CDS
TTGCTTAATCAGCAGTTGAG+TGG 0.562436 3_1:+58968824 Msa0365190:three_prime_UTR
AATCCAGTTGGGAAGCTGGT+TGG 0.562899 3_1:+58967785 Msa0365190:CDS
CCTGTTGAGATAGAAGAAAA+CGG 0.565962 3_1:-58967074 None:intergenic
GTCGGGGTGGTTAGGTCCCG+AGG 0.565995 3_1:+58967626 Msa0365190:CDS
CATAAATCTAAATCAGTTTG+GGG 0.574747 3_1:+58968726 Msa0365190:three_prime_UTR
GGGGTGAGCAATTGTTCTAG+TGG 0.575296 3_1:+58968934 Msa0365190:three_prime_UTR
ATGCAGCAGCAGCCATCGGT+TGG 0.576471 3_1:-58967428 None:intergenic
GCCAAAGCCCTTCTCACCGG+TGG 0.577439 3_1:-58967873 None:intergenic
TGAAACTAATTTGTGTGGTG+TGG 0.589973 3_1:-58966983 None:intergenic
TCTCACCGGTGGAAAGGGCA+CGG 0.594226 3_1:-58967862 None:intergenic
GTAGCCAAAGCCCTTCTCAC+CGG 0.594772 3_1:-58967876 None:intergenic
CACCGAACAAGAAGGAAGGA+AGG 0.597774 3_1:-58967400 None:intergenic
GGAAAATGGTAGTAGTTCAG+AGG 0.600784 3_1:+58967703 Msa0365190:CDS
TATATTACCAGTGAGAAAAG+TGG 0.601545 3_1:-58967471 None:intergenic
CGGACCAGGAGCTGTTAGCA+TGG 0.603520 3_1:+58968274 Msa0365190:CDS
TTGAGATAGAAGAAAACGGC+CGG 0.606167 3_1:-58967070 None:intergenic
CCTAAAAGAAGCATCTCCGT+CGG 0.606730 3_1:+58967608 Msa0365190:CDS
GGGTGAGCAATTGTTCTAGT+GGG 0.606774 3_1:+58968935 Msa0365190:three_prime_UTR
TGGTTAAACACCGAACAAGA+AGG 0.608263 3_1:-58967408 None:intergenic
TAAGACGACAAGTGAAAGTG+AGG 0.612204 3_1:+58967675 Msa0365190:CDS
ACAAGTGAAAGTGAGGGCAG+TGG 0.614839 3_1:+58967682 Msa0365190:CDS
TTGAATGCAGCAGCAGCCAT+CGG 0.616311 3_1:-58967432 None:intergenic
CTAGTTTCACACCCACACCT+CGG 0.617486 3_1:-58967643 None:intergenic
CACCGTCTAACTGCTCGCGC+CGG 0.619205 3_1:+58967051 Msa0365190:five_prime_UTR
CATGACATTGGCAGACGCCG+TGG 0.622061 3_1:+58968429 Msa0365190:intron
GTCCTTGATGACGCGATGGA+AGG 0.624852 3_1:-58967909 None:intergenic
TGAAGTCCTTGATGACGCGA+TGG 0.626809 3_1:-58967913 None:intergenic
ATATCTCCAGTGTCTCATAC+CGG 0.627003 3_1:+58968254 Msa0365190:intron
GATGACGCGATGGAAGGTGG+AGG 0.631465 3_1:-58967903 None:intergenic
GTGGGTGTGAAACTAGCAGT+AGG 0.631670 3_1:+58967650 Msa0365190:CDS
AACTAATTTGTGTGGTGTGG+GGG 0.634874 3_1:-58966980 None:intergenic
TATCTATCGCAGGGAACTGG+AGG 0.635120 3_1:+58968028 Msa0365190:intron
AAACTAATTTGTGTGGTGTG+GGG 0.637259 3_1:-58966981 None:intergenic
CGCGTGCGTTAAAATTGAGG+AGG 0.637884 3_1:-58967371 None:intergenic
GCTTAATCAGCAGTTGAGTG+GGG 0.643968 3_1:+58968826 Msa0365190:three_prime_UTR
TTAGACGGTGGCTAACAAAG+TGG 0.654189 3_1:-58967038 None:intergenic
GAATCACAGGAGACTGATCG+TGG 0.655138 3_1:+58968515 Msa0365190:CDS
TAAACACCGAACAAGAAGGA+AGG 0.656755 3_1:-58967404 None:intergenic
ACGGTGGCTAACAAAGTGGA+CGG 0.656857 3_1:-58967034 None:intergenic
TCGGGACCTAACCACCCCGA+CGG 0.658560 3_1:-58967624 None:intergenic
AAGAAGCATCTCCGTCGGGG+TGG 0.659605 3_1:+58967613 Msa0365190:CDS
AAGACGACAAGTGAAAGTGA+GGG 0.665886 3_1:+58967676 Msa0365190:CDS
CGGCGCGAGCAGTTAGACGG+TGG 0.670168 3_1:-58967050 None:intergenic
ACATGCCTCTGATCCAGCCA+CGG 0.671333 3_1:-58968446 None:intergenic
GACGATGAAACTAATTTGTG+TGG 0.689147 3_1:-58966988 None:intergenic
AAGGTGACAATCAGTGACTG+TGG 0.689468 3_1:+58968554 Msa0365190:CDS
ATTACCAGTGAGAAAAGTGG+CGG 0.690058 3_1:-58967468 None:intergenic
TAAAAGAAGCATCTCCGTCG+GGG 0.693386 3_1:+58967610 Msa0365190:CDS
GTGTTGAAAGACTGGTAAAG+GGG 0.712385 3_1:+58968915 Msa0365190:three_prime_UTR
AAGGACTTCATGATTCAAGG+AGG 0.745105 3_1:+58967926 Msa0365190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGTTGATAAATAAAAAA+AGG - chr3_1:58968003-58968022 None:intergenic 10.0%
!!! ATTTTATTTTAGTTTAGTTT+AGG + chr3_1:58968178-58968197 Msa0365190:intron 10.0%
!!! ATAAGTTGATAAATAAAAAA+AGG - chr3_1:58968003-58968022 None:intergenic 10.0%
!!! ATTTTATTTTAGTTTAGTTT+AGG + chr3_1:58968178-58968197 Msa0365190:intron 10.0%
!!! TTTTGTTTTATTTTGATTAG+TGG + chr3_1:58967259-58967278 Msa0365190:intron 15.0%
!! CATCAATTAAATTTAAGTAA+TGG - chr3_1:58967507-58967526 None:intergenic 15.0%
!!! TTTTGTTTTATTTTGATTAG+TGG + chr3_1:58967259-58967278 Msa0365190:intron 15.0%
!! CATCAATTAAATTTAAGTAA+TGG - chr3_1:58967507-58967526 None:intergenic 15.0%
!! TGTTATAAGGTCTATAATAA+TGG + chr3_1:58967291-58967310 Msa0365190:intron 20.0%
!! GTTATAAGGTCTATAATAAT+GGG + chr3_1:58967292-58967311 Msa0365190:intron 20.0%
!! TTATAAGGTCTATAATAATG+GGG + chr3_1:58967293-58967312 Msa0365190:intron 20.0%
!! TATTAATTGATTGATTGTCT+TGG + chr3_1:58967540-58967559 Msa0365190:intron 20.0%
!!! GTTGATAAATAAAAAAAGGA+AGG - chr3_1:58967999-58968018 None:intergenic 20.0%
!! AAATAAAATAAACACAGTGA+AGG - chr3_1:58968167-58968186 None:intergenic 20.0%
!!! TACTTTTAATTCTCTCTTAT+CGG + chr3_1:58968365-58968384 Msa0365190:intron 20.0%
!!! AATTTTTTGTTTTGTAAGCA+TGG + chr3_1:58968666-58968685 Msa0365190:three_prime_UTR 20.0%
!!! ATTTTTTGTTTTGTAAGCAT+GGG + chr3_1:58968667-58968686 Msa0365190:three_prime_UTR 20.0%
!! TTCATAAATCTAAATCAGTT+TGG + chr3_1:58968724-58968743 Msa0365190:three_prime_UTR 20.0%
!! TCATAAATCTAAATCAGTTT+GGG + chr3_1:58968725-58968744 Msa0365190:three_prime_UTR 20.0%
!!! AAATGAGTTTAAGTTATTCT+AGG - chr3_1:58968806-58968825 None:intergenic 20.0%
!! TGTTATAAGGTCTATAATAA+TGG + chr3_1:58967291-58967310 Msa0365190:intron 20.0%
!! GTTATAAGGTCTATAATAAT+GGG + chr3_1:58967292-58967311 Msa0365190:intron 20.0%
!! TTATAAGGTCTATAATAATG+GGG + chr3_1:58967293-58967312 Msa0365190:intron 20.0%
!! TATTAATTGATTGATTGTCT+TGG + chr3_1:58967540-58967559 Msa0365190:intron 20.0%
!!! GTTGATAAATAAAAAAAGGA+AGG - chr3_1:58967999-58968018 None:intergenic 20.0%
!! AAATAAAATAAACACAGTGA+AGG - chr3_1:58968167-58968186 None:intergenic 20.0%
!!! TACTTTTAATTCTCTCTTAT+CGG + chr3_1:58968365-58968384 Msa0365190:intron 20.0%
!!! AATTTTTTGTTTTGTAAGCA+TGG + chr3_1:58968666-58968685 Msa0365190:three_prime_UTR 20.0%
!!! ATTTTTTGTTTTGTAAGCAT+GGG + chr3_1:58968667-58968686 Msa0365190:three_prime_UTR 20.0%
!! TTCATAAATCTAAATCAGTT+TGG + chr3_1:58968724-58968743 Msa0365190:three_prime_UTR 20.0%
!! TCATAAATCTAAATCAGTTT+GGG + chr3_1:58968725-58968744 Msa0365190:three_prime_UTR 20.0%
!!! AAATGAGTTTAAGTTATTCT+AGG - chr3_1:58968806-58968825 None:intergenic 20.0%
!!! TTGAGTTGAATAGATAGATT+AGG + chr3_1:58967338-58967357 Msa0365190:intron 25.0%
! GTATTCTTTGATGTTAGTAT+TGG + chr3_1:58967761-58967780 Msa0365190:CDS 25.0%
! AAAACAAAAAATTGAGAGAG+CGG - chr3_1:58968659-58968678 None:intergenic 25.0%
! CATAAATCTAAATCAGTTTG+GGG + chr3_1:58968726-58968745 Msa0365190:three_prime_UTR 25.0%
! TTTCTAATATCAATGTCTCT+TGG - chr3_1:58968783-58968802 None:intergenic 25.0%
!!! TTGAGTTGAATAGATAGATT+AGG + chr3_1:58967338-58967357 Msa0365190:intron 25.0%
! GTATTCTTTGATGTTAGTAT+TGG + chr3_1:58967761-58967780 Msa0365190:CDS 25.0%
! AAAACAAAAAATTGAGAGAG+CGG - chr3_1:58968659-58968678 None:intergenic 25.0%
! CATAAATCTAAATCAGTTTG+GGG + chr3_1:58968726-58968745 Msa0365190:three_prime_UTR 25.0%
! TTTCTAATATCAATGTCTCT+TGG - chr3_1:58968783-58968802 None:intergenic 25.0%
!!! TGAGTTTTTGGTTCTTTCTA+TGG + chr3_1:58967097-58967116 Msa0365190:intron 30.0%
AAGAAAGAGAAAAGAGAGAA+TGG - chr3_1:58967186-58967205 None:intergenic 30.0%
! TCTCTCTTTTCTCTTTCTTT+TGG + chr3_1:58967187-58967206 Msa0365190:intron 30.0%
GTGTTTATGTCTCTATGAAA+TGG + chr3_1:58967230-58967249 Msa0365190:intron 30.0%
! GGTTTGATAATTCATCCATT+GGG + chr3_1:58967314-58967333 Msa0365190:intron 30.0%
TATATTACCAGTGAGAAAAG+TGG - chr3_1:58967474-58967493 None:intergenic 30.0%
AATTGATTGATTGTCTTGGT+TGG + chr3_1:58967544-58967563 Msa0365190:intron 30.0%
ATTGATTGATTGTCTTGGTT+GGG + chr3_1:58967545-58967564 Msa0365190:intron 30.0%
! TTAGTATTGGAAATCCAGTT+GGG + chr3_1:58967774-58967793 Msa0365190:CDS 30.0%
TTATCTATCTATCTATCGCA+GGG + chr3_1:58968019-58968038 Msa0365190:intron 30.0%
TAAAATAAACACAGTGAAGG+AGG - chr3_1:58968164-58968183 None:intergenic 30.0%
ACTTAATTGTCTCATGACAT+TGG + chr3_1:58968417-58968436 Msa0365190:intron 30.0%
AACAAAACATGTCAAGCAAT+TGG - chr3_1:58968587-58968606 None:intergenic 30.0%
!!! TGACATGTTTTGTTTTCTCA+TGG + chr3_1:58968593-58968612 Msa0365190:exon 30.0%
TATACATTGTGTTGAAAGAC+TGG + chr3_1:58968907-58968926 Msa0365190:three_prime_UTR 30.0%
ATGGTGAAGGACTATATATA+AGG + chr3_1:58968976-58968995 Msa0365190:intron 30.0%
TGGTGAAGGACTATATATAA+GGG + chr3_1:58968977-58968996 Msa0365190:intron 30.0%
!!! TGAGTTTTTGGTTCTTTCTA+TGG + chr3_1:58967097-58967116 Msa0365190:intron 30.0%
AAGAAAGAGAAAAGAGAGAA+TGG - chr3_1:58967186-58967205 None:intergenic 30.0%
! TCTCTCTTTTCTCTTTCTTT+TGG + chr3_1:58967187-58967206 Msa0365190:intron 30.0%
GTGTTTATGTCTCTATGAAA+TGG + chr3_1:58967230-58967249 Msa0365190:intron 30.0%
! GGTTTGATAATTCATCCATT+GGG + chr3_1:58967314-58967333 Msa0365190:intron 30.0%
TATATTACCAGTGAGAAAAG+TGG - chr3_1:58967474-58967493 None:intergenic 30.0%
AATTGATTGATTGTCTTGGT+TGG + chr3_1:58967544-58967563 Msa0365190:intron 30.0%
ATTGATTGATTGTCTTGGTT+GGG + chr3_1:58967545-58967564 Msa0365190:intron 30.0%
! TTAGTATTGGAAATCCAGTT+GGG + chr3_1:58967774-58967793 Msa0365190:CDS 30.0%
TTATCTATCTATCTATCGCA+GGG + chr3_1:58968019-58968038 Msa0365190:intron 30.0%
TAAAATAAACACAGTGAAGG+AGG - chr3_1:58968164-58968183 None:intergenic 30.0%
ACTTAATTGTCTCATGACAT+TGG + chr3_1:58968417-58968436 Msa0365190:intron 30.0%
AACAAAACATGTCAAGCAAT+TGG - chr3_1:58968587-58968606 None:intergenic 30.0%
!!! TGACATGTTTTGTTTTCTCA+TGG + chr3_1:58968593-58968612 Msa0365190:exon 30.0%
TATACATTGTGTTGAAAGAC+TGG + chr3_1:58968907-58968926 Msa0365190:three_prime_UTR 30.0%
ATGGTGAAGGACTATATATA+AGG + chr3_1:58968976-58968995 Msa0365190:intron 30.0%
TGGTGAAGGACTATATATAA+GGG + chr3_1:58968977-58968996 Msa0365190:intron 30.0%
! AAACTAATTTGTGTGGTGTG+GGG - chr3_1:58966984-58967003 None:intergenic 35.0%
! GAAACTAATTTGTGTGGTGT+GGG - chr3_1:58966985-58967004 None:intergenic 35.0%
! TGAAACTAATTTGTGTGGTG+TGG - chr3_1:58966986-58967005 None:intergenic 35.0%
! GACGATGAAACTAATTTGTG+TGG - chr3_1:58966991-58967010 None:intergenic 35.0%
CCTGTTGAGATAGAAGAAAA+CGG - chr3_1:58967077-58967096 None:intergenic 35.0%
! TATCTCAACAGGTGAGTTTT+TGG + chr3_1:58967085-58967104 Msa0365190:intron 35.0%
! GTGGATTGAGTAGTGTTATA+AGG + chr3_1:58967278-58967297 Msa0365190:intron 35.0%
! GGGTTTGATAATTCATCCAT+TGG + chr3_1:58967313-58967332 Msa0365190:intron 35.0%
TCTATTCAACTCAAACCCAA+TGG - chr3_1:58967332-58967351 None:intergenic 35.0%
!!! CTTCTTTTAGGGTTAGGATT+AGG - chr3_1:58967599-58967618 None:intergenic 35.0%
! GTTAGTATTGGAAATCCAGT+TGG + chr3_1:58967773-58967792 Msa0365190:CDS 35.0%
ATCAAGGACTTCATGATTCA+AGG + chr3_1:58967923-58967942 Msa0365190:CDS 35.0%
CTTATCTATCTATCTATCGC+AGG + chr3_1:58968018-58968037 Msa0365190:intron 35.0%
! TATGAAAAACTGACTCCCAT+TGG - chr3_1:58968318-58968337 None:intergenic 35.0%
! GTTTTTCATATGCACTGTCA+AGG + chr3_1:58968328-58968347 Msa0365190:CDS 35.0%
! TGTTGTATTTGGCCAAGTTT+TGG + chr3_1:58968466-58968485 Msa0365190:CDS 35.0%
!! TGTTAGGTTGATTGAATCAC+AGG + chr3_1:58968502-58968521 Msa0365190:CDS 35.0%
ACTGATTGTCACCTTCTTTA+GGG - chr3_1:58968549-58968568 None:intergenic 35.0%
TTGTGTTGAAAGACTGGTAA+AGG + chr3_1:58968913-58968932 Msa0365190:three_prime_UTR 35.0%
TGTGTTGAAAGACTGGTAAA+GGG + chr3_1:58968914-58968933 Msa0365190:three_prime_UTR 35.0%
GGTGAAGGACTATATATAAG+GGG + chr3_1:58968978-58968997 Msa0365190:intron 35.0%
! AAACTAATTTGTGTGGTGTG+GGG - chr3_1:58966984-58967003 None:intergenic 35.0%
! GAAACTAATTTGTGTGGTGT+GGG - chr3_1:58966985-58967004 None:intergenic 35.0%
! TGAAACTAATTTGTGTGGTG+TGG - chr3_1:58966986-58967005 None:intergenic 35.0%
! GACGATGAAACTAATTTGTG+TGG - chr3_1:58966991-58967010 None:intergenic 35.0%
CCTGTTGAGATAGAAGAAAA+CGG - chr3_1:58967077-58967096 None:intergenic 35.0%
! TATCTCAACAGGTGAGTTTT+TGG + chr3_1:58967085-58967104 Msa0365190:intron 35.0%
! GTGGATTGAGTAGTGTTATA+AGG + chr3_1:58967278-58967297 Msa0365190:intron 35.0%
! GGGTTTGATAATTCATCCAT+TGG + chr3_1:58967313-58967332 Msa0365190:intron 35.0%
TCTATTCAACTCAAACCCAA+TGG - chr3_1:58967332-58967351 None:intergenic 35.0%
!!! CTTCTTTTAGGGTTAGGATT+AGG - chr3_1:58967599-58967618 None:intergenic 35.0%
! GTTAGTATTGGAAATCCAGT+TGG + chr3_1:58967773-58967792 Msa0365190:CDS 35.0%
ATCAAGGACTTCATGATTCA+AGG + chr3_1:58967923-58967942 Msa0365190:CDS 35.0%
CTTATCTATCTATCTATCGC+AGG + chr3_1:58968018-58968037 Msa0365190:intron 35.0%
! TATGAAAAACTGACTCCCAT+TGG - chr3_1:58968318-58968337 None:intergenic 35.0%
! GTTTTTCATATGCACTGTCA+AGG + chr3_1:58968328-58968347 Msa0365190:CDS 35.0%
! TGTTGTATTTGGCCAAGTTT+TGG + chr3_1:58968466-58968485 Msa0365190:CDS 35.0%
!! TGTTAGGTTGATTGAATCAC+AGG + chr3_1:58968502-58968521 Msa0365190:CDS 35.0%
ACTGATTGTCACCTTCTTTA+GGG - chr3_1:58968549-58968568 None:intergenic 35.0%
TTGTGTTGAAAGACTGGTAA+AGG + chr3_1:58968913-58968932 Msa0365190:three_prime_UTR 35.0%
TGTGTTGAAAGACTGGTAAA+GGG + chr3_1:58968914-58968933 Msa0365190:three_prime_UTR 35.0%
GGTGAAGGACTATATATAAG+GGG + chr3_1:58968978-58968997 Msa0365190:intron 35.0%
!! GGTATTGGCAACAACAATAC+AGG - chr3_1:58966956-58966975 None:intergenic 40.0%
! AACTAATTTGTGTGGTGTGG+GGG - chr3_1:58966983-58967002 None:intergenic 40.0%
!!! GTCCACTTTTTCTACCAAAG+TGG + chr3_1:58967008-58967027 Msa0365190:five_prime_UTR 40.0%
!! TGCCACTTTGGTAGAAAAAG+TGG - chr3_1:58967013-58967032 None:intergenic 40.0%
TTGAGATAGAAGAAAACGGC+CGG - chr3_1:58967073-58967092 None:intergenic 40.0%
! CCGTTTTCTTCTATCTCAAC+AGG + chr3_1:58967074-58967093 Msa0365190:five_prime_UTR 40.0%
!! TCTTTTGGTGATTGCTCTCT+AGG + chr3_1:58967202-58967221 Msa0365190:intron 40.0%
ATCCTTCCTTCCTTCTTGTT+CGG + chr3_1:58967398-58967417 Msa0365190:five_prime_UTR 40.0%
TAAACACCGAACAAGAAGGA+AGG - chr3_1:58967407-58967426 None:intergenic 40.0%
TGGTTAAACACCGAACAAGA+AGG - chr3_1:58967411-58967430 None:intergenic 40.0%
ATTACCAGTGAGAAAAGTGG+CGG - chr3_1:58967471-58967490 None:intergenic 40.0%
!!! GAGATGCTTCTTTTAGGGTT+AGG - chr3_1:58967605-58967624 None:intergenic 40.0%
TAAGACGACAAGTGAAAGTG+AGG + chr3_1:58967675-58967694 Msa0365190:CDS 40.0%
AAGACGACAAGTGAAAGTGA+GGG + chr3_1:58967676-58967695 Msa0365190:CDS 40.0%
GGAAAATGGTAGTAGTTCAG+AGG + chr3_1:58967703-58967722 Msa0365190:CDS 40.0%
AGGATTGTGATAGGACTCTT+TGG + chr3_1:58967809-58967828 Msa0365190:CDS 40.0%
AAGGACTTCATGATTCAAGG+AGG + chr3_1:58967926-58967945 Msa0365190:CDS 40.0%
CAAGGAGGAGACTTTGATAA+AGG + chr3_1:58967941-58967960 Msa0365190:CDS 40.0%
!! ACTGGAGGCAAAAGTATCTA+TGG + chr3_1:58968043-58968062 Msa0365190:CDS 40.0%
ATATCTCCAGTGTCTCATAC+CGG + chr3_1:58968254-58968273 Msa0365190:intron 40.0%
! GATCAGAGGCATGTTGTATT+TGG + chr3_1:58968455-58968474 Msa0365190:CDS 40.0%
!!! GTATTTGGCCAAGTTTTGGA+AGG + chr3_1:58968470-58968489 Msa0365190:CDS 40.0%
CTGATTGTCACCTTCTTTAG+GGG - chr3_1:58968548-58968567 None:intergenic 40.0%
! CACTGATTGTCACCTTCTTT+AGG - chr3_1:58968550-58968569 None:intergenic 40.0%
! TTCTTTGTTTCTTGCTGCTG+AGG + chr3_1:58968619-58968638 Msa0365190:three_prime_UTR 40.0%
! TGTTTTGTAAGCATGGGTTC+TGG + chr3_1:58968673-58968692 Msa0365190:three_prime_UTR 40.0%
TTGCTTAATCAGCAGTTGAG+TGG + chr3_1:58968824-58968843 Msa0365190:three_prime_UTR 40.0%
TGCTTAATCAGCAGTTGAGT+GGG + chr3_1:58968825-58968844 Msa0365190:three_prime_UTR 40.0%
GTGTTGAAAGACTGGTAAAG+GGG + chr3_1:58968915-58968934 Msa0365190:three_prime_UTR 40.0%
AGAAAGGGAGTTAATGGTGA+AGG + chr3_1:58968963-58968982 Msa0365190:intron 40.0%
GGACTATATATAAGGGGTTG+AGG + chr3_1:58968984-58969003 Msa0365190:intron 40.0%
!! GGTATTGGCAACAACAATAC+AGG - chr3_1:58966956-58966975 None:intergenic 40.0%
! AACTAATTTGTGTGGTGTGG+GGG - chr3_1:58966983-58967002 None:intergenic 40.0%
!!! GTCCACTTTTTCTACCAAAG+TGG + chr3_1:58967008-58967027 Msa0365190:five_prime_UTR 40.0%
!! TGCCACTTTGGTAGAAAAAG+TGG - chr3_1:58967013-58967032 None:intergenic 40.0%
TTGAGATAGAAGAAAACGGC+CGG - chr3_1:58967073-58967092 None:intergenic 40.0%
! CCGTTTTCTTCTATCTCAAC+AGG + chr3_1:58967074-58967093 Msa0365190:five_prime_UTR 40.0%
!! TCTTTTGGTGATTGCTCTCT+AGG + chr3_1:58967202-58967221 Msa0365190:intron 40.0%
ATCCTTCCTTCCTTCTTGTT+CGG + chr3_1:58967398-58967417 Msa0365190:five_prime_UTR 40.0%
TAAACACCGAACAAGAAGGA+AGG - chr3_1:58967407-58967426 None:intergenic 40.0%
TGGTTAAACACCGAACAAGA+AGG - chr3_1:58967411-58967430 None:intergenic 40.0%
ATTACCAGTGAGAAAAGTGG+CGG - chr3_1:58967471-58967490 None:intergenic 40.0%
!!! GAGATGCTTCTTTTAGGGTT+AGG - chr3_1:58967605-58967624 None:intergenic 40.0%
TAAGACGACAAGTGAAAGTG+AGG + chr3_1:58967675-58967694 Msa0365190:CDS 40.0%
AAGACGACAAGTGAAAGTGA+GGG + chr3_1:58967676-58967695 Msa0365190:CDS 40.0%
GGAAAATGGTAGTAGTTCAG+AGG + chr3_1:58967703-58967722 Msa0365190:CDS 40.0%
AGGATTGTGATAGGACTCTT+TGG + chr3_1:58967809-58967828 Msa0365190:CDS 40.0%
AAGGACTTCATGATTCAAGG+AGG + chr3_1:58967926-58967945 Msa0365190:CDS 40.0%
CAAGGAGGAGACTTTGATAA+AGG + chr3_1:58967941-58967960 Msa0365190:CDS 40.0%
!! ACTGGAGGCAAAAGTATCTA+TGG + chr3_1:58968043-58968062 Msa0365190:CDS 40.0%
ATATCTCCAGTGTCTCATAC+CGG + chr3_1:58968254-58968273 Msa0365190:intron 40.0%
! GATCAGAGGCATGTTGTATT+TGG + chr3_1:58968455-58968474 Msa0365190:CDS 40.0%
!!! GTATTTGGCCAAGTTTTGGA+AGG + chr3_1:58968470-58968489 Msa0365190:CDS 40.0%
CTGATTGTCACCTTCTTTAG+GGG - chr3_1:58968548-58968567 None:intergenic 40.0%
! CACTGATTGTCACCTTCTTT+AGG - chr3_1:58968550-58968569 None:intergenic 40.0%
! TTCTTTGTTTCTTGCTGCTG+AGG + chr3_1:58968619-58968638 Msa0365190:three_prime_UTR 40.0%
! TGTTTTGTAAGCATGGGTTC+TGG + chr3_1:58968673-58968692 Msa0365190:three_prime_UTR 40.0%
TTGCTTAATCAGCAGTTGAG+TGG + chr3_1:58968824-58968843 Msa0365190:three_prime_UTR 40.0%
TGCTTAATCAGCAGTTGAGT+GGG + chr3_1:58968825-58968844 Msa0365190:three_prime_UTR 40.0%
GTGTTGAAAGACTGGTAAAG+GGG + chr3_1:58968915-58968934 Msa0365190:three_prime_UTR 40.0%
AGAAAGGGAGTTAATGGTGA+AGG + chr3_1:58968963-58968982 Msa0365190:intron 40.0%
GGACTATATATAAGGGGTTG+AGG + chr3_1:58968984-58969003 Msa0365190:intron 40.0%
TTAGACGGTGGCTAACAAAG+TGG - chr3_1:58967041-58967060 None:intergenic 45.0%
!! TTCGGTGTTTAACCAACCGA+TGG + chr3_1:58967416-58967435 Msa0365190:exon 45.0%
GATTGATTGTCTTGGTTGGG+TGG + chr3_1:58967548-58967567 Msa0365190:intron 45.0%
! CGACGGAGATGCTTCTTTTA+GGG - chr3_1:58967610-58967629 None:intergenic 45.0%
!! CCTAAAAGAAGCATCTCCGT+CGG + chr3_1:58967608-58967627 Msa0365190:CDS 45.0%
!! CTAAAAGAAGCATCTCCGTC+GGG + chr3_1:58967609-58967628 Msa0365190:CDS 45.0%
!! TAAAAGAAGCATCTCCGTCG+GGG + chr3_1:58967610-58967629 Msa0365190:CDS 45.0%
AAAGTGAGGGCAGTGGAAAA+TGG + chr3_1:58967689-58967708 Msa0365190:CDS 45.0%
CTGGTTGGAAGGATTGTGAT+AGG + chr3_1:58967800-58967819 Msa0365190:CDS 45.0%
GGAAGTTCTCAACAGTTTGC+GGG - chr3_1:58967844-58967863 None:intergenic 45.0%
CGGAAGTTCTCAACAGTTTG+CGG - chr3_1:58967845-58967864 None:intergenic 45.0%
ATCTATCTATCGCAGGGAAC+TGG + chr3_1:58968025-58968044 Msa0365190:intron 45.0%
! AACTGACTCCCATTGGTGTT+GGG - chr3_1:58968311-58968330 None:intergenic 45.0%
! AAACTGACTCCCATTGGTGT+TGG - chr3_1:58968312-58968331 None:intergenic 45.0%
TGTCCATGCCTTCCAAAACT+TGG - chr3_1:58968481-58968500 None:intergenic 45.0%
! TGGAAGGCATGGACATTGTT+AGG + chr3_1:58968486-58968505 Msa0365190:CDS 45.0%
AAGGTGACAATCAGTGACTG+TGG + chr3_1:58968554-58968573 Msa0365190:CDS 45.0%
GCTTAATCAGCAGTTGAGTG+GGG + chr3_1:58968826-58968845 Msa0365190:three_prime_UTR 45.0%
GGGTGAGCAATTGTTCTAGT+GGG + chr3_1:58968935-58968954 Msa0365190:three_prime_UTR 45.0%
! AGCAATTGTTCTAGTGGGTG+TGG + chr3_1:58968940-58968959 Msa0365190:three_prime_UTR 45.0%
! TTCTAGTGGGTGTGGAGAAA+GGG + chr3_1:58968948-58968967 Msa0365190:three_prime_UTR 45.0%
GTGTGGAGAAAGGGAGTTAA+TGG + chr3_1:58968957-58968976 Msa0365190:three_prime_UTR 45.0%
TTAGACGGTGGCTAACAAAG+TGG - chr3_1:58967041-58967060 None:intergenic 45.0%
!! TTCGGTGTTTAACCAACCGA+TGG + chr3_1:58967416-58967435 Msa0365190:exon 45.0%
GATTGATTGTCTTGGTTGGG+TGG + chr3_1:58967548-58967567 Msa0365190:intron 45.0%
! CGACGGAGATGCTTCTTTTA+GGG - chr3_1:58967610-58967629 None:intergenic 45.0%
!! CCTAAAAGAAGCATCTCCGT+CGG + chr3_1:58967608-58967627 Msa0365190:CDS 45.0%
!! CTAAAAGAAGCATCTCCGTC+GGG + chr3_1:58967609-58967628 Msa0365190:CDS 45.0%
!! TAAAAGAAGCATCTCCGTCG+GGG + chr3_1:58967610-58967629 Msa0365190:CDS 45.0%
AAAGTGAGGGCAGTGGAAAA+TGG + chr3_1:58967689-58967708 Msa0365190:CDS 45.0%
CTGGTTGGAAGGATTGTGAT+AGG + chr3_1:58967800-58967819 Msa0365190:CDS 45.0%
GGAAGTTCTCAACAGTTTGC+GGG - chr3_1:58967844-58967863 None:intergenic 45.0%
CGGAAGTTCTCAACAGTTTG+CGG - chr3_1:58967845-58967864 None:intergenic 45.0%
ATCTATCTATCGCAGGGAAC+TGG + chr3_1:58968025-58968044 Msa0365190:intron 45.0%
! AACTGACTCCCATTGGTGTT+GGG - chr3_1:58968311-58968330 None:intergenic 45.0%
! AAACTGACTCCCATTGGTGT+TGG - chr3_1:58968312-58968331 None:intergenic 45.0%
TGTCCATGCCTTCCAAAACT+TGG - chr3_1:58968481-58968500 None:intergenic 45.0%
! TGGAAGGCATGGACATTGTT+AGG + chr3_1:58968486-58968505 Msa0365190:CDS 45.0%
AAGGTGACAATCAGTGACTG+TGG + chr3_1:58968554-58968573 Msa0365190:CDS 45.0%
GCTTAATCAGCAGTTGAGTG+GGG + chr3_1:58968826-58968845 Msa0365190:three_prime_UTR 45.0%
GGGTGAGCAATTGTTCTAGT+GGG + chr3_1:58968935-58968954 Msa0365190:three_prime_UTR 45.0%
! AGCAATTGTTCTAGTGGGTG+TGG + chr3_1:58968940-58968959 Msa0365190:three_prime_UTR 45.0%
! TTCTAGTGGGTGTGGAGAAA+GGG + chr3_1:58968948-58968967 Msa0365190:three_prime_UTR 45.0%
GTGTGGAGAAAGGGAGTTAA+TGG + chr3_1:58968957-58968976 Msa0365190:three_prime_UTR 45.0%
ACGGTGGCTAACAAAGTGGA+CGG - chr3_1:58967037-58967056 None:intergenic 50.0%
CGCGTGCGTTAAAATTGAGG+AGG - chr3_1:58967374-58967393 None:intergenic 50.0%
TCGCGCGTGCGTTAAAATTG+AGG - chr3_1:58967377-58967396 None:intergenic 50.0%
CACCGAACAAGAAGGAAGGA+AGG - chr3_1:58967403-58967422 None:intergenic 50.0%
TTGAATGCAGCAGCAGCCAT+CGG - chr3_1:58967435-58967454 None:intergenic 50.0%
!!! AACACCGCCACTTTTCTCAC+TGG + chr3_1:58967464-58967483 Msa0365190:CDS 50.0%
! CCGACGGAGATGCTTCTTTT+AGG - chr3_1:58967611-58967630 None:intergenic 50.0%
TAGTTTCACACCCACACCTC+GGG - chr3_1:58967645-58967664 None:intergenic 50.0%
CTAGTTTCACACCCACACCT+CGG - chr3_1:58967646-58967665 None:intergenic 50.0%
GTGGGTGTGAAACTAGCAGT+AGG + chr3_1:58967650-58967669 Msa0365190:CDS 50.0%
ACAAGTGAAAGTGAGGGCAG+TGG + chr3_1:58967682-58967701 Msa0365190:CDS 50.0%
TGGAAATCCAGTTGGGAAGC+TGG + chr3_1:58967781-58967800 Msa0365190:CDS 50.0%
AATCCAGTTGGGAAGCTGGT+TGG + chr3_1:58967785-58967804 Msa0365190:CDS 50.0%
!! TGAAGTCCTTGATGACGCGA+TGG - chr3_1:58967916-58967935 None:intergenic 50.0%
TATCTATCGCAGGGAACTGG+AGG + chr3_1:58968028-58968047 Msa0365190:intron 50.0%
TTTGCCATGCTAACAGCTCC+TGG - chr3_1:58968281-58968300 None:intergenic 50.0%
GCTGTTAGCATGGCAAATGC+TGG + chr3_1:58968284-58968303 Msa0365190:CDS 50.0%
AATGCTGGTCCCAACACCAA+TGG + chr3_1:58968299-58968318 Msa0365190:CDS 50.0%
ATGCTGGTCCCAACACCAAT+GGG + chr3_1:58968300-58968319 Msa0365190:CDS 50.0%
!!! TGGCCAAGTTTTGGAAGGCA+TGG + chr3_1:58968475-58968494 Msa0365190:CDS 50.0%
GAATCACAGGAGACTGATCG+TGG + chr3_1:58968515-58968534 Msa0365190:CDS 50.0%
TGGTGATCGTCCCCTAAAGA+AGG + chr3_1:58968535-58968554 Msa0365190:CDS 50.0%
GGGGTGAGCAATTGTTCTAG+TGG + chr3_1:58968934-58968953 Msa0365190:three_prime_UTR 50.0%
! GTTCTAGTGGGTGTGGAGAA+AGG + chr3_1:58968947-58968966 Msa0365190:three_prime_UTR 50.0%
ACGGTGGCTAACAAAGTGGA+CGG - chr3_1:58967037-58967056 None:intergenic 50.0%
CGCGTGCGTTAAAATTGAGG+AGG - chr3_1:58967374-58967393 None:intergenic 50.0%
TCGCGCGTGCGTTAAAATTG+AGG - chr3_1:58967377-58967396 None:intergenic 50.0%
CACCGAACAAGAAGGAAGGA+AGG - chr3_1:58967403-58967422 None:intergenic 50.0%
TTGAATGCAGCAGCAGCCAT+CGG - chr3_1:58967435-58967454 None:intergenic 50.0%
!!! AACACCGCCACTTTTCTCAC+TGG + chr3_1:58967464-58967483 Msa0365190:CDS 50.0%
! CCGACGGAGATGCTTCTTTT+AGG - chr3_1:58967611-58967630 None:intergenic 50.0%
TAGTTTCACACCCACACCTC+GGG - chr3_1:58967645-58967664 None:intergenic 50.0%
CTAGTTTCACACCCACACCT+CGG - chr3_1:58967646-58967665 None:intergenic 50.0%
GTGGGTGTGAAACTAGCAGT+AGG + chr3_1:58967650-58967669 Msa0365190:CDS 50.0%
ACAAGTGAAAGTGAGGGCAG+TGG + chr3_1:58967682-58967701 Msa0365190:CDS 50.0%
TGGAAATCCAGTTGGGAAGC+TGG + chr3_1:58967781-58967800 Msa0365190:CDS 50.0%
AATCCAGTTGGGAAGCTGGT+TGG + chr3_1:58967785-58967804 Msa0365190:CDS 50.0%
!! TGAAGTCCTTGATGACGCGA+TGG - chr3_1:58967916-58967935 None:intergenic 50.0%
TATCTATCGCAGGGAACTGG+AGG + chr3_1:58968028-58968047 Msa0365190:intron 50.0%
TTTGCCATGCTAACAGCTCC+TGG - chr3_1:58968281-58968300 None:intergenic 50.0%
GCTGTTAGCATGGCAAATGC+TGG + chr3_1:58968284-58968303 Msa0365190:CDS 50.0%
AATGCTGGTCCCAACACCAA+TGG + chr3_1:58968299-58968318 Msa0365190:CDS 50.0%
ATGCTGGTCCCAACACCAAT+GGG + chr3_1:58968300-58968319 Msa0365190:CDS 50.0%
!!! TGGCCAAGTTTTGGAAGGCA+TGG + chr3_1:58968475-58968494 Msa0365190:CDS 50.0%
GAATCACAGGAGACTGATCG+TGG + chr3_1:58968515-58968534 Msa0365190:CDS 50.0%
TGGTGATCGTCCCCTAAAGA+AGG + chr3_1:58968535-58968554 Msa0365190:CDS 50.0%
GGGGTGAGCAATTGTTCTAG+TGG + chr3_1:58968934-58968953 Msa0365190:three_prime_UTR 50.0%
! GTTCTAGTGGGTGTGGAGAA+AGG + chr3_1:58968947-58968966 Msa0365190:three_prime_UTR 50.0%
!! TGGTGTGGGGGTACTGGTAT+TGG - chr3_1:58966971-58966990 None:intergenic 55.0%
! TTTGTGTGGTGTGGGGGTAC+TGG - chr3_1:58966977-58966996 None:intergenic 55.0%
! AAAGTGGACGGCTGCCACTT+TGG - chr3_1:58967025-58967044 None:intergenic 55.0%
CTTCCAACCAGCTTCCCAAC+TGG - chr3_1:58967791-58967810 None:intergenic 55.0%
CAGTTGGGAAGCTGGTTGGA+AGG + chr3_1:58967789-58967808 Msa0365190:CDS 55.0%
AACTTCCGTGCCCTTTCCAC+CGG + chr3_1:58967857-58967876 Msa0365190:CDS 55.0%
GTAGCCAAAGCCCTTCTCAC+CGG - chr3_1:58967879-58967898 None:intergenic 55.0%
!! CTTGATGACGCGATGGAAGG+TGG - chr3_1:58967909-58967928 None:intergenic 55.0%
CACCTTCCATCGCGTCATCA+AGG + chr3_1:58967907-58967926 Msa0365190:CDS 55.0%
!! GTCCTTGATGACGCGATGGA+AGG - chr3_1:58967912-58967931 None:intergenic 55.0%
CATGCTAACAGCTCCTGGTC+CGG - chr3_1:58968276-58968295 None:intergenic 55.0%
ACATGCCTCTGATCCAGCCA+CGG - chr3_1:58968449-58968468 None:intergenic 55.0%
!! TGGTGTGGGGGTACTGGTAT+TGG - chr3_1:58966971-58966990 None:intergenic 55.0%
! TTTGTGTGGTGTGGGGGTAC+TGG - chr3_1:58966977-58966996 None:intergenic 55.0%
! AAAGTGGACGGCTGCCACTT+TGG - chr3_1:58967025-58967044 None:intergenic 55.0%
CTTCCAACCAGCTTCCCAAC+TGG - chr3_1:58967791-58967810 None:intergenic 55.0%
CAGTTGGGAAGCTGGTTGGA+AGG + chr3_1:58967789-58967808 Msa0365190:CDS 55.0%
AACTTCCGTGCCCTTTCCAC+CGG + chr3_1:58967857-58967876 Msa0365190:CDS 55.0%
GTAGCCAAAGCCCTTCTCAC+CGG - chr3_1:58967879-58967898 None:intergenic 55.0%
!! CTTGATGACGCGATGGAAGG+TGG - chr3_1:58967909-58967928 None:intergenic 55.0%
CACCTTCCATCGCGTCATCA+AGG + chr3_1:58967907-58967926 Msa0365190:CDS 55.0%
!! GTCCTTGATGACGCGATGGA+AGG - chr3_1:58967912-58967931 None:intergenic 55.0%
CATGCTAACAGCTCCTGGTC+CGG - chr3_1:58968276-58968295 None:intergenic 55.0%
ACATGCCTCTGATCCAGCCA+CGG - chr3_1:58968449-58968468 None:intergenic 55.0%
ATGCAGCAGCAGCCATCGGT+TGG - chr3_1:58967431-58967450 None:intergenic 60.0%
!! AAGAAGCATCTCCGTCGGGG+TGG + chr3_1:58967613-58967632 Msa0365190:CDS 60.0%
GTGGTTAGGTCCCGAGGTGT+GGG + chr3_1:58967632-58967651 Msa0365190:CDS 60.0%
TCTCACCGGTGGAAAGGGCA+CGG - chr3_1:58967865-58967884 None:intergenic 60.0%
TGCCCTTTCCACCGGTGAGA+AGG + chr3_1:58967865-58967884 Msa0365190:CDS 60.0%
GCCCTTTCCACCGGTGAGAA+GGG + chr3_1:58967866-58967885 Msa0365190:CDS 60.0%
GCCCTTCTCACCGGTGGAAA+GGG - chr3_1:58967870-58967889 None:intergenic 60.0%
AGCCCTTCTCACCGGTGGAA+AGG - chr3_1:58967871-58967890 None:intergenic 60.0%
TCCACCGGTGAGAAGGGCTT+TGG + chr3_1:58967872-58967891 Msa0365190:CDS 60.0%
GATGACGCGATGGAAGGTGG+AGG - chr3_1:58967906-58967925 None:intergenic 60.0%
CCTGGTCCGGTATGAGACAC+TGG - chr3_1:58968263-58968282 None:intergenic 60.0%
CCAGTGTCTCATACCGGACC+AGG + chr3_1:58968260-58968279 Msa0365190:intron 60.0%
CGGACCAGGAGCTGTTAGCA+TGG + chr3_1:58968274-58968293 Msa0365190:CDS 60.0%
CATGACATTGGCAGACGCCG+TGG + chr3_1:58968429-58968448 Msa0365190:intron 60.0%
GGGGTTGAGGTGTGCACAGT+TGG + chr3_1:58968997-58969016 Msa0365190:intron 60.0%
ATGCAGCAGCAGCCATCGGT+TGG - chr3_1:58967431-58967450 None:intergenic 60.0%
!! AAGAAGCATCTCCGTCGGGG+TGG + chr3_1:58967613-58967632 Msa0365190:CDS 60.0%
GTGGTTAGGTCCCGAGGTGT+GGG + chr3_1:58967632-58967651 Msa0365190:CDS 60.0%
TCTCACCGGTGGAAAGGGCA+CGG - chr3_1:58967865-58967884 None:intergenic 60.0%
TGCCCTTTCCACCGGTGAGA+AGG + chr3_1:58967865-58967884 Msa0365190:CDS 60.0%
GCCCTTTCCACCGGTGAGAA+GGG + chr3_1:58967866-58967885 Msa0365190:CDS 60.0%
GCCCTTCTCACCGGTGGAAA+GGG - chr3_1:58967870-58967889 None:intergenic 60.0%
AGCCCTTCTCACCGGTGGAA+AGG - chr3_1:58967871-58967890 None:intergenic 60.0%
TCCACCGGTGAGAAGGGCTT+TGG + chr3_1:58967872-58967891 Msa0365190:CDS 60.0%
GATGACGCGATGGAAGGTGG+AGG - chr3_1:58967906-58967925 None:intergenic 60.0%
CCTGGTCCGGTATGAGACAC+TGG - chr3_1:58968263-58968282 None:intergenic 60.0%
CCAGTGTCTCATACCGGACC+AGG + chr3_1:58968260-58968279 Msa0365190:intron 60.0%
CGGACCAGGAGCTGTTAGCA+TGG + chr3_1:58968274-58968293 Msa0365190:CDS 60.0%
CATGACATTGGCAGACGCCG+TGG + chr3_1:58968429-58968448 Msa0365190:intron 60.0%
GGGGTTGAGGTGTGCACAGT+TGG + chr3_1:58968997-58969016 Msa0365190:intron 60.0%
CACCGTCTAACTGCTCGCGC+CGG + chr3_1:58967051-58967070 Msa0365190:five_prime_UTR 65.0%
GCATCTCCGTCGGGGTGGTT+AGG + chr3_1:58967618-58967637 Msa0365190:CDS 65.0%
TCGGGACCTAACCACCCCGA+CGG - chr3_1:58967627-58967646 None:intergenic 65.0%
GGTGGTTAGGTCCCGAGGTG+TGG + chr3_1:58967631-58967650 Msa0365190:CDS 65.0%
GCCAAAGCCCTTCTCACCGG+TGG - chr3_1:58967876-58967895 None:intergenic 65.0%
ACATTGGCAGACGCCGTGGC+TGG + chr3_1:58968433-58968452 Msa0365190:intron 65.0%
AGACGCCGTGGCTGGATCAG+AGG + chr3_1:58968441-58968460 Msa0365190:intron 65.0%
CACCGTCTAACTGCTCGCGC+CGG + chr3_1:58967051-58967070 Msa0365190:five_prime_UTR 65.0%
GCATCTCCGTCGGGGTGGTT+AGG + chr3_1:58967618-58967637 Msa0365190:CDS 65.0%
TCGGGACCTAACCACCCCGA+CGG - chr3_1:58967627-58967646 None:intergenic 65.0%
GGTGGTTAGGTCCCGAGGTG+TGG + chr3_1:58967631-58967650 Msa0365190:CDS 65.0%
GCCAAAGCCCTTCTCACCGG+TGG - chr3_1:58967876-58967895 None:intergenic 65.0%
ACATTGGCAGACGCCGTGGC+TGG + chr3_1:58968433-58968452 Msa0365190:intron 65.0%
AGACGCCGTGGCTGGATCAG+AGG + chr3_1:58968441-58968460 Msa0365190:intron 65.0%
CGGCGCGAGCAGTTAGACGG+TGG - chr3_1:58967053-58967072 None:intergenic 70.0%
GGCCGGCGCGAGCAGTTAGA+CGG - chr3_1:58967056-58967075 None:intergenic 70.0%
GTCGGGGTGGTTAGGTCCCG+AGG + chr3_1:58967626-58967645 Msa0365190:CDS 70.0%
CGGCGCGAGCAGTTAGACGG+TGG - chr3_1:58967053-58967072 None:intergenic 70.0%
GGCCGGCGCGAGCAGTTAGA+CGG - chr3_1:58967056-58967075 None:intergenic 70.0%
GTCGGGGTGGTTAGGTCCCG+AGG + chr3_1:58967626-58967645 Msa0365190:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 58966949 58969025 58966949 ID=Msa0365190;Name=Msa0365190
chr3_1 mRNA 58966949 58969025 58966949 ID=Msa0365190-mRNA-1;Parent=Msa0365190;Name=Msa0365190-mRNA-1;_AED=0.40;_eAED=0.40;_QI=231|1|1|1|0.66|0.42|7|409|245
chr3_1 exon 58966949 58967095 58966949 ID=Msa0365190-mRNA-1:exon:11217;Parent=Msa0365190-mRNA-1
chr3_1 exon 58967351 58967485 58967351 ID=Msa0365190-mRNA-1:exon:11218;Parent=Msa0365190-mRNA-1
chr3_1 exon 58967575 58967967 58967575 ID=Msa0365190-mRNA-1:exon:11219;Parent=Msa0365190-mRNA-1
chr3_1 exon 58968040 58968094 58968040 ID=Msa0365190-mRNA-1:exon:11220;Parent=Msa0365190-mRNA-1
chr3_1 exon 58968264 58968349 58968264 ID=Msa0365190-mRNA-1:exon:11221;Parent=Msa0365190-mRNA-1
chr3_1 exon 58968443 58968978 58968443 ID=Msa0365190-mRNA-1:exon:11222;Parent=Msa0365190-mRNA-1
chr3_1 exon 58969000 58969025 58969000 ID=Msa0365190-mRNA-1:exon:11223;Parent=Msa0365190-mRNA-1
chr3_1 five_prime_UTR 58966949 58967095 58966949 ID=Msa0365190-mRNA-1:five_prime_utr;Parent=Msa0365190-mRNA-1
chr3_1 five_prime_UTR 58967351 58967434 58967351 ID=Msa0365190-mRNA-1:five_prime_utr;Parent=Msa0365190-mRNA-1
chr3_1 CDS 58967435 58967485 58967435 ID=Msa0365190-mRNA-1:cds;Parent=Msa0365190-mRNA-1
chr3_1 CDS 58967575 58967967 58967575 ID=Msa0365190-mRNA-1:cds;Parent=Msa0365190-mRNA-1
chr3_1 CDS 58968040 58968094 58968040 ID=Msa0365190-mRNA-1:cds;Parent=Msa0365190-mRNA-1
chr3_1 CDS 58968264 58968349 58968264 ID=Msa0365190-mRNA-1:cds;Parent=Msa0365190-mRNA-1
chr3_1 CDS 58968443 58968595 58968443 ID=Msa0365190-mRNA-1:cds;Parent=Msa0365190-mRNA-1
chr3_1 three_prime_UTR 58968596 58968978 58968596 ID=Msa0365190-mRNA-1:three_prime_utr;Parent=Msa0365190-mRNA-1
chr3_1 three_prime_UTR 58969000 58969025 58969000 ID=Msa0365190-mRNA-1:three_prime_utr;Parent=Msa0365190-mRNA-1
Gene Sequence

>Msa0365190

ATGGCTGCTGCTGCATTCAATGTTACTACAACACCGCCACTTTTCTCACTGTCAAATGTTGTTGCTCTGAATCCTAATCCTAACCCTAAAAGAAGCATCTCCGTCGGGGTGGTTAGGTCCCGAGGTGTGGGTGTGAAACTAGCAGTAGGAGTAAGACGACAAGTGAAAGTGAGGGCAGTGGAAAATGGTAGTAGTTCAGAGGAGAAAGTAATAGTACAGTCAAAAGTGACTCACAAAGTATTCTTTGATGTTAGTATTGGAAATCCAGTTGGGAAGCTGGTTGGAAGGATTGTGATAGGACTCTTTGGTGATGATGTCCCGCAAACTGTTGAGAACTTCCGTGCCCTTTCCACCGGTGAGAAGGGCTTTGGCTACAAGTCCTCCACCTTCCATCGCGTCATCAAGGACTTCATGATTCAAGGAGGAGACTTTGATAAAGGAAATGGAACTGGAGGCAAAAGTATCTATGGTCGTACTTTCAAAGATGAGAATTTTAATCTGTCTCATACCGGACCAGGAGCTGTTAGCATGGCAAATGCTGGTCCCAACACCAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACGCCGTGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCACAGGAGACTGATCGTGGTGATCGTCCCCTAAAGAAGGTGACAATCAGTGACTGTGGCGAGCTTCCAATTGCTTGA
Protein sequence

>Msa0365190

MAAAAFNVTTTPPLFSLSNVVALNPNPNPKRSISVGVVRSRGVGVKLAVGVRRQVKVRAVENGSSSEEKVIVQSKVTHKVFFDVSIGNPVGKLVGRIVIGLFGDDVPQTVENFRALSTGEKGFGYKSSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGAVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPLKKVTISDCGELPIA*