AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1232980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1232980 MtrunA17_Chr8g0342441 96.491 342 10 2 26 366 1 341 0.0 676
Msa1232980 MtrunA17_Chr2g0285411 40.938 320 165 11 69 366 3 320 4.12e-66 212
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1232980 AT3G13800.1 70.294 340 90 4 37 366 23 361 1.82e-172 484
Msa1232980 AT3G13800.4 70.294 340 90 4 37 366 23 361 1.82e-172 484
Msa1232980 AT3G13800.3 79.643 280 55 2 88 366 1 279 2.90e-167 468
Msa1232980 AT3G13800.2 79.643 280 55 2 88 366 1 279 2.90e-167 468
Msa1232980 AT1G30300.1 38.730 315 170 10 74 366 11 324 8.33e-60 196
Msa1232980 AT1G30300.3 38.730 315 170 10 74 366 11 324 8.33e-60 196
Msa1232980 AT1G30300.2 38.730 315 170 10 74 366 11 324 8.33e-60 196
Msa1232980 AT1G30300.4 38.730 315 170 10 74 366 11 324 8.33e-60 196
Msa1232980 AT4G03610.4 39.172 314 159 11 81 366 9 318 1.04e-56 188
Msa1232980 AT4G03610.1 37.261 314 150 12 81 366 9 303 3.64e-48 165
Msa1232980 AT4G03610.2 39.130 276 136 11 81 328 9 280 2.82e-46 160
Msa1232980 AT4G03610.3 39.592 245 118 10 81 299 9 249 7.57e-41 144

Find 92 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCGGTGGTTTCCCGAATT+TGG 0.079143 8_2:-9608705 Msa1232980:CDS
CGCTCTTCAGCTACACATTT+TGG 0.129908 8_2:-9605752 Msa1232980:CDS
AATTGGAGCTGTAATAATTT+TGG 0.157569 8_2:-9611107 Msa1232980:CDS
TGACTACCTTACAAAATTAT+TGG 0.195753 8_2:-9605154 Msa1232980:CDS
CGGTCCCTTGGTTTCCGTTT+TGG 0.200037 8_2:-9606099 Msa1232980:CDS
TCACGCTTGGCTACATAAAT+TGG 0.214243 8_2:+9607912 None:intergenic
TGATACTATACATATGTTAT+AGG 0.281663 8_2:-9604873 Msa1232980:three_prime_UTR
TTGTATCAACTAAATAATAA+TGG 0.283710 8_2:+9606597 None:intergenic
AAGAATGGTGATAGGGAAAA+AGG 0.301564 8_2:+9604924 None:intergenic
TCCGGTGGTTTCCCGAATTT+GGG 0.301656 8_2:-9608704 Msa1232980:intron
ACTACAGTTTCACTCATAAA+AGG 0.301817 8_2:-9605070 Msa1232980:three_prime_UTR
GGGACGTAAACGGCGTGAAT+AGG 0.347516 8_2:+9610973 None:intergenic
AAGAAATAAAGAATGGTGAT+AGG 0.348889 8_2:+9604916 None:intergenic
CAGGTAAACTAACCCAAATT+CGG 0.349548 8_2:+9608692 None:intergenic
CAGTCACAAGTTATATTCAT+TGG 0.350720 8_2:-9610694 Msa1232980:CDS
TTGTACAAAAGCTGCTAAAC+CGG 0.368677 8_2:-9609658 Msa1232980:CDS
GGACGTAAACGGCGTGAATA+GGG 0.375208 8_2:+9610974 None:intergenic
CATTCTCATGCTGATGCAAT+TGG 0.382278 8_2:-9608116 Msa1232980:CDS
AAAAGTGGATAAGTTTCTTC+AGG 0.386969 8_2:+9605940 None:intergenic
CAAGTTATATTCATTGGAAC+TGG 0.391006 8_2:-9610688 Msa1232980:CDS
AGAGAGGTTACGAGAGTGGA+TGG 0.395924 8_2:+9610925 None:intergenic
ACAAGAGAAGTGAGGGAAGA+AGG 0.401170 8_2:+9611010 None:intergenic
TGTATCAACTAAATAATAAT+GGG 0.405339 8_2:+9606598 None:intergenic
TTGGTAATATATGTTACATA+AGG 0.409235 8_2:-9606080 Msa1232980:intron
CACAATATTCTTATAGATGC+TGG 0.417952 8_2:-9609573 Msa1232980:CDS
TGTAGCCAAGCGTGACTTTG+AGG 0.419835 8_2:-9607904 Msa1232980:intron
GGACTGTGAACTTCTAATAA+TGG 0.420963 8_2:-9605914 Msa1232980:intron
ATAACTTGTGACTGATCAAC+GGG 0.421460 8_2:+9610703 None:intergenic
TGTGGCATGGTCAAGGTTAT+CGG 0.423742 8_2:-9606119 Msa1232980:CDS
GCAGTTTCTTCCAATGGAAT+TGG 0.430423 8_2:-9610739 Msa1232980:intron
AGAGAGAGAGGTTACGAGAG+TGG 0.438581 8_2:+9610921 None:intergenic
CTAAACCGGGTGATAAGAAT+AGG 0.450434 8_2:-9609644 Msa1232980:CDS
GATGCGCAACTGAGCTATGA+TGG 0.461379 8_2:-9605117 Msa1232980:CDS
CGAGAGTGGATGGGAGAGAG+AGG 0.467527 8_2:+9610935 None:intergenic
GGTCAAGGTTATCGGTCCCT+TGG 0.481205 8_2:-9606111 Msa1232980:CDS
TTCAACATCACCAATTCCAT+TGG 0.484673 8_2:+9610729 None:intergenic
TGTGTTGCAGTTTCTTCCAA+TGG 0.485288 8_2:-9610745 Msa1232980:intron
TTAGTCAAGCAGCTAATTCT+CGG 0.485741 8_2:+9610649 None:intergenic
GAGAGGAAAAGAGATGGAAG+AGG 0.486755 8_2:+9610952 None:intergenic
AGAAATAAAGAATGGTGATA+GGG 0.486767 8_2:+9604917 None:intergenic
TACAAAATTATTGGAGTCTG+AGG 0.491029 8_2:-9605145 Msa1232980:CDS
AGATGGAAGAGGGACGTAAA+CGG 0.493124 8_2:+9610963 None:intergenic
GGTAAAGAAGAAATAAAGAA+TGG 0.495634 8_2:+9604909 None:intergenic
AGAAGGAAGAAGACGAATGG+AGG 0.497572 8_2:+9611027 None:intergenic
GGGAGAGAGAGGAAAAGAGA+TGG 0.502379 8_2:+9610946 None:intergenic
AGTTCACAGTCCTTCAAAAG+TGG 0.504029 8_2:+9605925 None:intergenic
AGAGGAAAAGAGATGGAAGA+GGG 0.505567 8_2:+9610953 None:intergenic
AGGAAGAAGACGAATGGAGG+AGG 0.505636 8_2:+9611030 None:intergenic
ACCGGGCATTTAGTAGAAGA+AGG 0.507183 8_2:+9610625 None:intergenic
TGACCATGCCACACTGGTAG+TGG 0.508732 8_2:+9606129 None:intergenic
TCCTTCTTCTACTAAATGCC+CGG 0.510449 8_2:-9610626 Msa1232980:intron
TGTAACATATATTACCAAAA+CGG 0.516666 8_2:+9606085 None:intergenic
AGGTAAACTAACCCAAATTC+GGG 0.517181 8_2:+9608693 None:intergenic
TCTCATGCTGATGCAATTGG+AGG 0.529678 8_2:-9608113 Msa1232980:intron
ATGTGTAGCTGAAGAGCGAT+CGG 0.537686 8_2:+9605757 None:intergenic
GAGAGGTTACGAGAGTGGAT+GGG 0.540984 8_2:+9610926 None:intergenic
CATAGCTCAGTTGCGCATCA+AGG 0.543483 8_2:+9605121 None:intergenic
ATTCGCCACGCGAATGCCAC+AGG 0.550713 8_2:-9609600 Msa1232980:CDS
TTGAAATGAATGTCATTACC+AGG 0.551112 8_2:-9604991 Msa1232980:three_prime_UTR
GTCTTGATGATCTTAGAGAC+TGG 0.552009 8_2:-9607959 Msa1232980:CDS
GAGGACCTCAAAGTCACGCT+TGG 0.556366 8_2:+9607899 None:intergenic
CTTGGCTACATAAATTGGAA+TGG 0.558295 8_2:+9607917 None:intergenic
GGAAGAAGGAAGAAGACGAA+TGG 0.560651 8_2:+9611024 None:intergenic
AATGCTGAGACCGCAGCACC+AGG 0.563087 8_2:+9606563 None:intergenic
ATGGAGGAGGTAACCACCAT+TGG 0.563532 8_2:+9611043 None:intergenic
ATGATGAACAAGAGAAGTGA+GGG 0.565176 8_2:+9611003 None:intergenic
ATTGGAACTGGAACTAGTGA+AGG 0.568637 8_2:-9610676 Msa1232980:CDS
TGTGTAGCTGAAGAGCGATC+GGG 0.569534 8_2:+9605758 None:intergenic
TGAAGGTATGATGCATCTGA+TGG 0.575148 8_2:-9605193 Msa1232980:intron
TGTACAAAAGCTGCTAAACC+GGG 0.576014 8_2:-9609657 Msa1232980:CDS
GCTACATAAATTGGAATGGA+GGG 0.577865 8_2:+9607921 None:intergenic
AGTCTCCTATTCTTATCACC+CGG 0.577902 8_2:+9609639 None:intergenic
TATAACTTGTGACTGATCAA+CGG 0.580151 8_2:+9610702 None:intergenic
ACCCAAATTCGGGAAACCAC+CGG 0.588739 8_2:+9608703 None:intergenic
CTACCAGTGTGGCATGGTCA+AGG 0.589078 8_2:-9606126 Msa1232980:CDS
ATGCGCAACTGAGCTATGAT+GGG 0.595409 8_2:-9605116 Msa1232980:CDS
TATTACCAAAACGGAAACCA+AGG 0.596749 8_2:+9606094 None:intergenic
TCTATCACAGTGCTCTCCGG+TGG 0.598907 8_2:-9608719 Msa1232980:CDS
GGCTACATAAATTGGAATGG+AGG 0.601861 8_2:+9607920 None:intergenic
ACAAAATTATTGGAGTCTGA+GGG 0.606652 8_2:-9605144 Msa1232980:CDS
TAGTATCATAGTGTTAAGAG+AGG 0.612714 8_2:+9604888 None:intergenic
ACACAACACAGTTGAACCAA+TGG 0.614022 8_2:-9611059 Msa1232980:CDS
AAGAATATTGTGTGTTCCTG+TGG 0.620931 8_2:+9609584 None:intergenic
TAACCTTGACCATGCCACAC+TGG 0.621640 8_2:+9606123 None:intergenic
TGTAATCATACCTGGTGCTG+CGG 0.622886 8_2:-9606573 Msa1232980:CDS
GATACAAGTGTAATCATACC+TGG 0.624797 8_2:-9606581 Msa1232980:CDS
ACTCCACTACCAGTGTGGCA+TGG 0.653555 8_2:-9606132 Msa1232980:CDS
ATTACCAAAACGGAAACCAA+GGG 0.656302 8_2:+9606095 None:intergenic
GATGATGAACAAGAGAAGTG+AGG 0.656452 8_2:+9611002 None:intergenic
GTGTTCCTGTGGCATTCGCG+TGG 0.658076 8_2:+9609595 None:intergenic
CAACACAGTTGAACCAATGG+TGG 0.660001 8_2:-9611056 Msa1232980:CDS
AGTTTACTCCACTACCAGTG+TGG 0.676456 8_2:-9606137 Msa1232980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTACCTTTTTTAA+TGG - chr8_2:9605550-9605569 Msa1232980:intron 10.0%
!! ATTGTAATAACCATTAAAAA+AGG + chr8_2:9605563-9605582 None:intergenic 15.0%
!!! CAAATTATGATTTTATGATA+TGG + chr8_2:9605610-9605629 None:intergenic 15.0%
!! ATAAAATCATAATTTGAGTA+TGG - chr8_2:9605614-9605633 Msa1232980:intron 15.0%
!!! ATTATTTTTGCCTTTTTTTA+TGG - chr8_2:9606247-9606266 Msa1232980:intron 15.0%
!!! AGCATTGATTTTTTTTAATA+CGG + chr8_2:9608209-9608228 None:intergenic 15.0%
!! CATTAGATAAATTATGTATT+TGG + chr8_2:9608434-9608453 None:intergenic 15.0%
!! TTCTCAAATATTATAACTTT+CGG - chr8_2:9608875-9608894 Msa1232980:intron 15.0%
!!! TTAAATCATTTTATACTTTC+AGG + chr8_2:9609201-9609220 None:intergenic 15.0%
!! TGTATCAACTAAATAATAAT+GGG + chr8_2:9609344-9609363 None:intergenic 15.0%
!! TTGTATCAACTAAATAATAA+TGG + chr8_2:9609345-9609364 None:intergenic 15.0%
!!! AATTTTTTAATGTGAAAATG+AGG + chr8_2:9610096-9610115 None:intergenic 15.0%
!! ACATTAAAAAATTAGAACTA+TGG - chr8_2:9610103-9610122 Msa1232980:intron 15.0%
!!! GTAATTATGGTTTTAAATAA+AGG + chr8_2:9610666-9610685 None:intergenic 15.0%
!! ATTGATGAAATATGTAATTA+TGG + chr8_2:9610679-9610698 None:intergenic 15.0%
!!! ATGAATTTGATGATAAGATA+AGG + chr8_2:9605354-9605373 None:intergenic 20.0%
!!! ATTTTCTTAAGTTATCATCA+GGG - chr8_2:9605451-9605470 Msa1232980:intron 20.0%
!! TAAGTTTATCGATATTGTTT+CGG + chr8_2:9605690-9605709 None:intergenic 20.0%
!!! TTAAGTTGAGGAAAATTTAT+AGG - chr8_2:9605833-9605852 Msa1232980:intron 20.0%
!!! TAAGTTGAGGAAAATTTATA+GGG - chr8_2:9605834-9605853 Msa1232980:intron 20.0%
!!! TCTTTCTAATTAGTTTTTCT+AGG + chr8_2:9606064-9606083 None:intergenic 20.0%
!! AGATTAATGATAGAACTTTA+TGG - chr8_2:9606089-9606108 Msa1232980:CDS 20.0%
!! TGGATTGAAATCAAAATAAA+AGG + chr8_2:9606468-9606487 None:intergenic 20.0%
!!! TAGAGTTTCTTTTCTTTTTA+TGG - chr8_2:9606520-9606539 Msa1232980:CDS 20.0%
!! AAATTAATAGATAGCAATTG+TGG - chr8_2:9606572-9606591 Msa1232980:CDS 20.0%
!! AACAGAAAAAATAATTGAAC+AGG + chr8_2:9607269-9607288 None:intergenic 20.0%
!! TTTGTGCAAGTATTATAATT+GGG - chr8_2:9607535-9607554 Msa1232980:intron 20.0%
!! TTTATGTCAACATGTTTAAA+TGG - chr8_2:9608270-9608289 Msa1232980:intron 20.0%
!!! GTAAATTGTTTCTTGTAAAT+AGG + chr8_2:9608365-9608384 None:intergenic 20.0%
!!! TATACATCTTTTAAATGTTG+AGG + chr8_2:9608554-9608573 None:intergenic 20.0%
!! TTTGTAGTTAAAAATTGAGA+AGG - chr8_2:9608580-9608599 Msa1232980:intron 20.0%
!! AAATTATAATACAGAACCTT+TGG + chr8_2:9608681-9608700 None:intergenic 20.0%
!! GAAAGTTATAATATTTGAGA+AGG + chr8_2:9608876-9608895 None:intergenic 20.0%
!! TCTCAAATATTATAACTTTC+GGG - chr8_2:9608876-9608895 Msa1232980:intron 20.0%
!!! ATAATAAGCTTGATTTTGTT+AGG - chr8_2:9608906-9608925 Msa1232980:intron 20.0%
!! ATAATATAATGAAATGATCG+AGG - chr8_2:9609467-9609486 Msa1232980:intron 20.0%
!! TAATATAATGAAATGATCGA+GGG - chr8_2:9609468-9609487 Msa1232980:intron 20.0%
!! CAATCAATTGATGTATTTAA+AGG - chr8_2:9609540-9609559 Msa1232980:intron 20.0%
!! TCAGAAATTACGAATTTAAT+AGG + chr8_2:9609723-9609742 None:intergenic 20.0%
!! TGTAACATATATTACCAAAA+CGG + chr8_2:9609857-9609876 None:intergenic 20.0%
!!! TTGGTAATATATGTTACATA+AGG - chr8_2:9609859-9609878 Msa1232980:intron 20.0%
!!! ATATGTATTGACAAAAAATC+TGG + chr8_2:9609934-9609953 None:intergenic 20.0%
!! TAAAAATCAACAAATGTGAA+AGG + chr8_2:9610237-9610256 None:intergenic 20.0%
!!! ACATTTGTTGATTTTTATCT+TGG - chr8_2:9610240-9610259 Msa1232980:intron 20.0%
!! AGTTCATTGATCAAATATTT+AGG - chr8_2:9610425-9610444 Msa1232980:intron 20.0%
!! GTAGTAACTAAAAAAAATTG+TGG - chr8_2:9610480-9610499 Msa1232980:intron 20.0%
!!! TATGGTTTTAAATAAAGGTT+CGG + chr8_2:9610661-9610680 None:intergenic 20.0%
!! TGATACTATACATATGTTAT+AGG - chr8_2:9611066-9611085 Msa1232980:CDS 20.0%
!! AATTGGAGCTGTAATAATTT+TGG - chr8_2:9604832-9604851 Msa1232980:three_prime_UTR 25.0%
!!! AAGGTTGATAATTATAGTAC+CGG + chr8_2:9605335-9605354 None:intergenic 25.0%
!! CATTTTCTTAAGTTATCATC+AGG - chr8_2:9605450-9605469 Msa1232980:intron 25.0%
!! TGAAGTATGATGTTTGTTAA+GGG - chr8_2:9605524-9605543 Msa1232980:intron 25.0%
! TATGATATGGTAAGATAAGA+TGG + chr8_2:9605597-9605616 None:intergenic 25.0%
!! ATTAAGTATCACTTAAGTTG+AGG - chr8_2:9605821-9605840 Msa1232980:intron 25.0%
! CTAATGCTATAATTTCATGT+TGG + chr8_2:9605912-9605931 None:intergenic 25.0%
! CCTACAATAACCATAAAAAA+AGG + chr8_2:9606260-9606279 None:intergenic 25.0%
!!! CCTTTTTTTATGGTTATTGT+AGG - chr8_2:9606257-9606276 Msa1232980:intron 25.0%
! ATATGTATTGCAATTATGCT+AGG - chr8_2:9606416-9606435 Msa1232980:intron 25.0%
! ATTATGCTAGGTTATGAATT+AGG - chr8_2:9606428-9606447 Msa1232980:intron 25.0%
! AAGAAAAGAAACTCTAACTT+TGG + chr8_2:9606516-9606535 None:intergenic 25.0%
! TTATACAAGCAAAATATTCC+AGG + chr8_2:9606602-9606621 None:intergenic 25.0%
! CGATTAATATATAGTGTGTT+AGG - chr8_2:9607045-9607064 Msa1232980:intron 25.0%
! AAACTGAGAAATTCAATTCA+AGG - chr8_2:9607108-9607127 Msa1232980:intron 25.0%
!!! CTATTTTCCATATTGCTTTT+CGG - chr8_2:9607318-9607337 Msa1232980:intron 25.0%
! AGTACTCTACAACTTTAATA+AGG - chr8_2:9607344-9607363 Msa1232980:intron 25.0%
! GTACTCTACAACTTTAATAA+GGG - chr8_2:9607345-9607364 Msa1232980:intron 25.0%
! CTTTGTGCAAGTATTATAAT+TGG - chr8_2:9607534-9607553 Msa1232980:intron 25.0%
! AATTGGGATTATCAAATATC+TGG - chr8_2:9607551-9607570 Msa1232980:intron 25.0%
!!! TTTTTGTCTCTTAAGTTGAT+AGG + chr8_2:9607591-9607610 None:intergenic 25.0%
! GTTAATACTTTCTAATACTC+TGG - chr8_2:9607857-9607876 Msa1232980:intron 25.0%
!! TTGAAAGCTTTAATTTCAGA+AGG + chr8_2:9608079-9608098 None:intergenic 25.0%
! ATATATATGTCTAAGAGACT+AGG - chr8_2:9608127-9608146 Msa1232980:CDS 25.0%
! GCTATTATTAAGATCAAATG+TGG - chr8_2:9608157-9608176 Msa1232980:intron 25.0%
!! TTTTTAATACGGTGATATGT+GGG + chr8_2:9608198-9608217 None:intergenic 25.0%
!!! TTTTTTAATACGGTGATATG+TGG + chr8_2:9608199-9608218 None:intergenic 25.0%
! GTCAAATGTTTCTTGTAAAA+AGG - chr8_2:9608464-9608483 Msa1232980:intron 25.0%
! TTTGGATCAAGATATTATAC+AGG + chr8_2:9608663-9608682 None:intergenic 25.0%
! TGTATAATATCTTGATCCAA+AGG - chr8_2:9608662-9608681 Msa1232980:intron 25.0%
!! CTGTATTATAATTTGTGTGA+TGG - chr8_2:9608687-9608706 Msa1232980:intron 25.0%
!!! TATGATAGCTTTTGAAATTC+AGG - chr8_2:9608724-9608743 Msa1232980:CDS 25.0%
!!! ATGATAGCTTTTGAAATTCA+GGG - chr8_2:9608725-9608744 Msa1232980:CDS 25.0%
!!! TAGAAAAATGAAGTGTTTTC+AGG - chr8_2:9608840-9608859 Msa1232980:intron 25.0%
!!! AGAAAAATGAAGTGTTTTCA+GGG - chr8_2:9608841-9608860 Msa1232980:intron 25.0%
! ACACTTTATCTACTCAATAA+GGG + chr8_2:9608935-9608954 None:intergenic 25.0%
! TAAACGTCAAGAAATCTATT+AGG + chr8_2:9609100-9609119 None:intergenic 25.0%
! TTAAAATGCAGTTATAAGAG+TGG + chr8_2:9609622-9609641 None:intergenic 25.0%
!!! CAGTGTAAATTAGTTTTACA+CGG + chr8_2:9609690-9609709 None:intergenic 25.0%
! AGTTTATGGAAAGATAGATA+AGG + chr8_2:9610071-9610090 None:intergenic 25.0%
!! ATAATGTGTATACTTTTGAC+AGG - chr8_2:9610147-9610166 Msa1232980:intron 25.0%
! TGACTACCTTACAAAATTAT+TGG - chr8_2:9610785-9610804 Msa1232980:intron 25.0%
! AGAAATAAAGAATGGTGATA+GGG + chr8_2:9611025-9611044 None:intergenic 25.0%
! AAGAAATAAAGAATGGTGAT+AGG + chr8_2:9611026-9611045 None:intergenic 25.0%
! GGTAAAGAAGAAATAAAGAA+TGG + chr8_2:9611033-9611052 None:intergenic 25.0%
! TATAACTTGTGACTGATCAA+CGG + chr8_2:9605240-9605259 None:intergenic 30.0%
CAGTCACAAGTTATATTCAT+TGG - chr8_2:9605245-9605264 Msa1232980:intron 30.0%
CAAGTTATATTCATTGGAAC+TGG - chr8_2:9605251-9605270 Msa1232980:intron 30.0%
!! AGGTTGATAATTATAGTACC+GGG + chr8_2:9605334-9605353 None:intergenic 30.0%
! CTGAAGTATGATGTTTGTTA+AGG - chr8_2:9605523-9605542 Msa1232980:intron 30.0%
ATATGGTAAGATAAGATGGT+AGG + chr8_2:9605593-9605612 None:intergenic 30.0%
TTTGTTCAGTGCTTCATTTA+TGG - chr8_2:9605771-9605790 Msa1232980:CDS 30.0%
TAATAGCGGTAATGTTGTAT+GGG - chr8_2:9605863-9605882 Msa1232980:intron 30.0%
! TTGGTTTAGGATTTCTATTG+AGG - chr8_2:9606208-9606227 Msa1232980:intron 30.0%
CACAATATTCTTATAGATGC+TGG - chr8_2:9606366-9606385 Msa1232980:intron 30.0%
ACATCAAGAAATCACAAACT+TGG + chr8_2:9606488-9606507 None:intergenic 30.0%
! GTTGATTCATTTACAAGTGA+AGG - chr8_2:9606650-9606669 Msa1232980:intron 30.0%
TGCATTACAAAACCTTTCAA+CGG - chr8_2:9606702-9606721 Msa1232980:intron 30.0%
TGATATATCATATCCTGACT+AGG + chr8_2:9606767-9606786 None:intergenic 30.0%
TAGTCAGGATATGATATATC+AGG - chr8_2:9606766-9606785 Msa1232980:intron 30.0%
AGTCAGGATATGATATATCA+GGG - chr8_2:9606767-9606786 Msa1232980:intron 30.0%
TATGAATTATTCGCTACTCT+AGG + chr8_2:9606805-9606824 None:intergenic 30.0%
TTTCCTGAAATACAAGAACA+GGG + chr8_2:9606864-9606883 None:intergenic 30.0%
ATTTCCTGAAATACAAGAAC+AGG + chr8_2:9606865-9606884 None:intergenic 30.0%
GATACACATTACAATGAGAT+TGG - chr8_2:9606893-9606912 Msa1232980:intron 30.0%
!!! AGCTTTATTTTGTAACAGAC+AGG + chr8_2:9607000-9607019 None:intergenic 30.0%
AATCGAGTTATAGTCAAGAT+AGG + chr8_2:9607030-9607049 None:intergenic 30.0%
AAATAGACATGCATACAGTA+TGG - chr8_2:9607068-9607087 Msa1232980:intron 30.0%
!!! ATTTTTGTTTTCCTCGAAAC+TGG + chr8_2:9607134-9607153 None:intergenic 30.0%
CGAAAAGCAATATGGAAAAT+AGG + chr8_2:9607320-9607339 None:intergenic 30.0%
! TACTTTTCCGAAAAGCAATA+TGG + chr8_2:9607328-9607347 None:intergenic 30.0%
CTACAACTTTAATAAGGGTT+AGG - chr8_2:9607350-9607369 Msa1232980:intron 30.0%
GGTTCATATAAAGTTGTAGT+GGG - chr8_2:9607472-9607491 Msa1232980:intron 30.0%
TATATATAGACAACAAGCAG+AGG + chr8_2:9608114-9608133 None:intergenic 30.0%
ATCAAATGTGGAAACTGTAA+GGG - chr8_2:9608169-9608188 Msa1232980:intron 30.0%
ATGTTTCTTGTAAAAAGGAC+CGG - chr8_2:9608469-9608488 Msa1232980:intron 30.0%
CACACTTTATCTACTCAATA+AGG + chr8_2:9608936-9608955 None:intergenic 30.0%
AAGTGTGATATTAAGCAATG+AGG - chr8_2:9608949-9608968 Msa1232980:intron 30.0%
AAGAGACAAATCCAAAAGAT+TGG + chr8_2:9608992-9609011 None:intergenic 30.0%
TAACAAATGATTCATGAGTC+CGG + chr8_2:9609239-9609258 None:intergenic 30.0%
!!! GAAGAACCTTTTTTTGTACA+CGG - chr8_2:9609418-9609437 Msa1232980:intron 30.0%
TTCAATCCGTGTACAAAAAA+AGG + chr8_2:9609427-9609446 None:intergenic 30.0%
!!! TTTTTTTGTACACGGATTGA+AGG - chr8_2:9609426-9609445 Msa1232980:intron 30.0%
AAAAAATGAAACACTCCCAT+TGG - chr8_2:9609660-9609679 Msa1232980:CDS 30.0%
AAAAGTGGATAAGTTTCTTC+AGG + chr8_2:9610002-9610021 None:intergenic 30.0%
!! AGAAACTTATCCACTTTTGA+AGG - chr8_2:9610004-9610023 Msa1232980:intron 30.0%
TATGGAAAGATAGATAAGGT+AGG + chr8_2:9610067-9610086 None:intergenic 30.0%
TATGGCATAGTATTTCTCTT+TGG - chr8_2:9610121-9610140 Msa1232980:intron 30.0%
! TTATTCTGATCATCCTTTTC+AGG - chr8_2:9610272-9610291 Msa1232980:intron 30.0%
! AATTTTTCTCACTTCCTCTA+AGG + chr8_2:9610298-9610317 None:intergenic 30.0%
TGAGAAAAATTCAACCCAAA+AGG - chr8_2:9610307-9610326 Msa1232980:intron 30.0%
CTGTTGCATAAAGAAAATCA+AGG + chr8_2:9610397-9610416 None:intergenic 30.0%
GAATATCTCCTAAAGTTCAT+AGG - chr8_2:9610458-9610477 Msa1232980:intron 30.0%
AGTTACTACCTATGAACTTT+AGG + chr8_2:9610469-9610488 None:intergenic 30.0%
! CGTTGCAATCTTTTATATTG+TGG - chr8_2:9610541-9610560 Msa1232980:intron 30.0%
! AATTTTTGATGTCTCGTTGT+TGG - chr8_2:9610718-9610737 Msa1232980:CDS 30.0%
! CAGACTCCAATAATTTTGTA+AGG + chr8_2:9610794-9610813 None:intergenic 30.0%
TACAAAATTATTGGAGTCTG+AGG - chr8_2:9610794-9610813 Msa1232980:intron 30.0%
ACAAAATTATTGGAGTCTGA+GGG - chr8_2:9610795-9610814 Msa1232980:intron 30.0%
ACTACAGTTTCACTCATAAA+AGG - chr8_2:9610869-9610888 Msa1232980:intron 30.0%
TTGAAATGAATGTCATTACC+AGG - chr8_2:9610948-9610967 Msa1232980:CDS 30.0%
!!! TGTCATTACCAGGTTTTTTA+TGG - chr8_2:9610958-9610977 Msa1232980:CDS 30.0%
TGTACATACCATAAAAAACC+TGG + chr8_2:9610969-9610988 None:intergenic 30.0%
! TTATGGTATGTACATTTTGC+AGG - chr8_2:9610975-9610994 Msa1232980:CDS 30.0%
TAGTATCATAGTGTTAAGAG+AGG + chr8_2:9611054-9611073 None:intergenic 30.0%
ATGATGAACAAGAGAAGTGA+GGG + chr8_2:9604939-9604958 None:intergenic 35.0%
TTCAACATCACCAATTCCAT+TGG + chr8_2:9605213-9605232 None:intergenic 35.0%
! ATAACTTGTGACTGATCAAC+GGG + chr8_2:9605239-9605258 None:intergenic 35.0%
TTAGTCAAGCAGCTAATTCT+CGG + chr8_2:9605293-9605312 None:intergenic 35.0%
TTATAGGGTAGCTGTAATAG+CGG - chr8_2:9605849-9605868 Msa1232980:intron 35.0%
GTAATAGCGGTAATGTTGTA+TGG - chr8_2:9605862-9605881 Msa1232980:intron 35.0%
TATAGCATTAGAGAGAGAGT+TGG - chr8_2:9605921-9605940 Msa1232980:CDS 35.0%
ATAGCATTAGAGAGAGAGTT+GGG - chr8_2:9605922-9605941 Msa1232980:CDS 35.0%
TAGTTGAAATGGTACAAACC+AGG - chr8_2:9605955-9605974 Msa1232980:CDS 35.0%
!! GTTGTTGTTGTTTATGTGTC+TGG - chr8_2:9606159-9606178 Msa1232980:intron 35.0%
TTATGTGTCTGGATCTTGTT+TGG - chr8_2:9606170-9606189 Msa1232980:intron 35.0%
!! ATCTTGTTTGGTGTTTGTGT+CGG - chr8_2:9606182-9606201 Msa1232980:intron 35.0%
TTGTACAAAAGCTGCTAAAC+CGG - chr8_2:9606281-9606300 Msa1232980:intron 35.0%
AAGAATATTGTGTGTTCCTG+TGG + chr8_2:9606358-9606377 None:intergenic 35.0%
TGGACTCATGAAAACTCTAA+TGG - chr8_2:9606540-9606559 Msa1232980:CDS 35.0%
CTATGAATTAAGCCGTTGAA+AGG + chr8_2:9606717-9606736 None:intergenic 35.0%
CAGAAAAAGAGAGAAAACCA+GGG - chr8_2:9606737-9606756 Msa1232980:intron 35.0%
! ATTGGTGTTTATGCAAAGAG+TGG - chr8_2:9606911-9606930 Msa1232980:intron 35.0%
CTCACGTGTTTGCTTAATTT+GGG - chr8_2:9607164-9607183 Msa1232980:intron 35.0%
AGGTAAACTAACCCAAATTC+GGG + chr8_2:9607249-9607268 None:intergenic 35.0%
CAGGTAAACTAACCCAAATT+CGG + chr8_2:9607250-9607269 None:intergenic 35.0%
GTAGAATGGAATATTTGAGC+AGG - chr8_2:9607381-9607400 Msa1232980:intron 35.0%
! GCAGGTTATCTATTCTGTTT+TGG + chr8_2:9607412-9607431 None:intergenic 35.0%
TCATATATGCACCATTAGAG+CGG - chr8_2:9607451-9607470 Msa1232980:intron 35.0%
CTTTATATGAACCGCTCTAA+TGG + chr8_2:9607465-9607484 None:intergenic 35.0%
CGGTTCATATAAAGTTGTAG+TGG - chr8_2:9607471-9607490 Msa1232980:intron 35.0%
CAAGCTTAACTCATACACTA+TGG + chr8_2:9607511-9607530 None:intergenic 35.0%
TAGTGTATGAGTTAAGCTTG+TGG - chr8_2:9607511-9607530 Msa1232980:intron 35.0%
! TGACTAGTTGTATTTCTGTC+AGG - chr8_2:9607770-9607789 Msa1232980:intron 35.0%
GCTACATAAATTGGAATGGA+GGG + chr8_2:9608021-9608040 None:intergenic 35.0%
CTTGGCTACATAAATTGGAA+TGG + chr8_2:9608025-9608044 None:intergenic 35.0%
GATCAAATGTGGAAACTGTA+AGG - chr8_2:9608168-9608187 Msa1232980:intron 35.0%
! TATTATTGAAGTACTCCCTC+TGG - chr8_2:9608338-9608357 Msa1232980:intron 35.0%
TTCTTGTAAATAGGACCAGA+GGG + chr8_2:9608356-9608375 None:intergenic 35.0%
TTTCTTGTAAATAGGACCAG+AGG + chr8_2:9608357-9608376 None:intergenic 35.0%
!!! ATAGCTTTTGAAATTCAGGG+AGG - chr8_2:9608728-9608747 Msa1232980:intron 35.0%
!!! TAGCTTTTGAAATTCAGGGA+GGG - chr8_2:9608729-9608748 Msa1232980:intron 35.0%
AGCATAACTGTAAAGCAAGA+TGG + chr8_2:9608762-9608781 None:intergenic 35.0%
! ATCCAAAAGATTGGTCCATT+AGG + chr8_2:9608983-9609002 None:intergenic 35.0%
ACGTCAAGAAATCTATTAGG+CGG + chr8_2:9609097-9609116 None:intergenic 35.0%
AACAGGAAATCCAAATCCAT+GGG + chr8_2:9609158-9609177 None:intergenic 35.0%
TAACAGGAAATCCAAATCCA+TGG + chr8_2:9609159-9609178 None:intergenic 35.0%
TTAAAGCTTGTGAAGATCAC+CGG - chr8_2:9609217-9609236 Msa1232980:intron 35.0%
TGTTCATTACTGAAATGTGC+AGG - chr8_2:9609306-9609325 Msa1232980:intron 35.0%
GATACAAGTGTAATCATACC+TGG - chr8_2:9609358-9609377 Msa1232980:intron 35.0%
!!! TGGGAGTGTTTCATTTTTTC+AGG + chr8_2:9609659-9609678 None:intergenic 35.0%
! GTTTTACACGGATTTCCAAT+GGG + chr8_2:9609678-9609697 None:intergenic 35.0%
! AGTTTTACACGGATTTCCAA+TGG + chr8_2:9609679-9609698 None:intergenic 35.0%
TGACTGAAATTGTTGTGCAT+GGG - chr8_2:9609740-9609759 Msa1232980:intron 35.0%
ATTACCAAAACGGAAACCAA+GGG + chr8_2:9609847-9609866 None:intergenic 35.0%
TATTACCAAAACGGAAACCA+AGG + chr8_2:9609848-9609867 None:intergenic 35.0%
GGACTGTGAACTTCTAATAA+TGG - chr8_2:9610025-9610044 Msa1232980:intron 35.0%
AAAGATAGATAAGGTAGGAG+GGG + chr8_2:9610062-9610081 None:intergenic 35.0%
GAAAGATAGATAAGGTAGGA+GGG + chr8_2:9610063-9610082 None:intergenic 35.0%
!! GTGAAAATGAGGCTAGTTTA+TGG + chr8_2:9610085-9610104 None:intergenic 35.0%
! TACACATTTTGGACTTCCAA+GGG - chr8_2:9610198-9610217 Msa1232980:intron 35.0%
!!! CCAGTAAAAAGTGTCCTTTT+GGG + chr8_2:9610324-9610343 None:intergenic 35.0%
!!! ACCAGTAAAAAGTGTCCTTT+TGG + chr8_2:9610325-9610344 None:intergenic 35.0%
TTTCATGTAAGTGAACCACA+AGG + chr8_2:9610611-9610630 None:intergenic 35.0%
AAGAATGGTGATAGGGAAAA+AGG + chr8_2:9611018-9611037 None:intergenic 35.0%
ACACAACACAGTTGAACCAA+TGG - chr8_2:9604880-9604899 Msa1232980:three_prime_UTR 40.0%
GATGATGAACAAGAGAAGTG+AGG + chr8_2:9604940-9604959 None:intergenic 40.0%
AGAGGAAAAGAGATGGAAGA+GGG + chr8_2:9604989-9605008 None:intergenic 40.0%
GAAGATGTAGTTAGAGAGAG+AGG + chr8_2:9605033-9605052 None:intergenic 40.0%
TGTGTTGCAGTTTCTTCCAA+TGG - chr8_2:9605194-9605213 Msa1232980:intron 40.0%
GCAGTTTCTTCCAATGGAAT+TGG - chr8_2:9605200-9605219 Msa1232980:intron 40.0%
ATTGGAACTGGAACTAGTGA+AGG - chr8_2:9605263-9605282 Msa1232980:intron 40.0%
TCCTTCTTCTACTAAATGCC+CGG - chr8_2:9605313-9605332 Msa1232980:intron 40.0%
TCAGTGTCAGTGTTTCGTTT+AGG - chr8_2:9605493-9605512 Msa1232980:intron 40.0%
TGTTGTATGGGACAAAGTGT+TGG - chr8_2:9605875-9605894 Msa1232980:intron 40.0%
! GTTGTATGGGACAAAGTGTT+GGG - chr8_2:9605876-9605895 Msa1232980:intron 40.0%
TAGCATTAGAGAGAGAGTTG+GGG - chr8_2:9605923-9605942 Msa1232980:CDS 40.0%
GGTAGCAAGTGTAGTTGAAA+TGG - chr8_2:9605944-9605963 Msa1232980:CDS 40.0%
ATTACATGCTCAAACCACCT+AGG + chr8_2:9605981-9606000 None:intergenic 40.0%
! GACCTGTAGATTTTGCAGTA+AGG - chr8_2:9606006-9606025 Msa1232980:intron 40.0%
CTCCTTACTGCAAAATCTAC+AGG + chr8_2:9606011-9606030 None:intergenic 40.0%
GAGAGTAGTCAAATCACTGA+AGG - chr8_2:9606028-9606047 Msa1232980:intron 40.0%
! TTTGTGTCGGTGTTTGGTTT+AGG - chr8_2:9606195-9606214 Msa1232980:intron 40.0%
TGTACAAAAGCTGCTAAACC+GGG - chr8_2:9606282-9606301 Msa1232980:intron 40.0%
CTAAACCGGGTGATAAGAAT+AGG - chr8_2:9606295-9606314 Msa1232980:intron 40.0%
AGTCTCCTATTCTTATCACC+CGG + chr8_2:9606303-9606322 None:intergenic 40.0%
AAACCAGAGAAAACCTAGTC+AGG - chr8_2:9606751-9606770 Msa1232980:intron 40.0%
! TATCCTGACTAGGTTTTCTC+TGG + chr8_2:9606757-9606776 None:intergenic 40.0%
GCAGAAAAAGAGAGAAAACC+AGG - chr8_2:9606736-9606755 Msa1232980:intron 40.0%
TCTCCCTGTTCTTGTATTTC+AGG - chr8_2:9606858-9606877 Msa1232980:intron 40.0%
! CAGTTAGTTTACTGCACAGT+TGG - chr8_2:9606943-9606962 Msa1232980:intron 40.0%
AGTTTACTGCACAGTTGGTT+AGG - chr8_2:9606948-9606967 Msa1232980:intron 40.0%
CCAAATTAAGCAAACACGTG+AGG + chr8_2:9607166-9607185 None:intergenic 40.0%
CCTCACGTGTTTGCTTAATT+TGG - chr8_2:9607163-9607182 Msa1232980:intron 40.0%
! TTTTCTATCACAGTGCTCTC+CGG - chr8_2:9607217-9607236 Msa1232980:intron 40.0%
GTTAGGAACTGCATGTAGAA+TGG - chr8_2:9607367-9607386 Msa1232980:intron 40.0%
! TATAAAGTTGTAGTGGGACC+AGG - chr8_2:9607478-9607497 Msa1232980:intron 40.0%
! ATAAAGTTGTAGTGGGACCA+GGG - chr8_2:9607479-9607498 Msa1232980:intron 40.0%
TCACAAGAGTTGTACATCAG+TGG - chr8_2:9607613-9607632 Msa1232980:intron 40.0%
TACATCAGTGGCATTTCTTG+TGG - chr8_2:9607625-9607644 Msa1232980:intron 40.0%
CGATCTACATCATAAGCTCT+AGG + chr8_2:9607688-9607707 None:intergenic 40.0%
CATTCTCATGCTGATGCAAT+TGG - chr8_2:9607823-9607842 Msa1232980:intron 40.0%
! TCTAAGATCATCAAGACCTG+GGG + chr8_2:9607977-9607996 None:intergenic 40.0%
!! CTCTAAGATCATCAAGACCT+GGG + chr8_2:9607978-9607997 None:intergenic 40.0%
!! TCTCTAAGATCATCAAGACC+TGG + chr8_2:9607979-9607998 None:intergenic 40.0%
! GTCTTGATGATCTTAGAGAC+TGG - chr8_2:9607980-9607999 Msa1232980:intron 40.0%
GGCTACATAAATTGGAATGG+AGG + chr8_2:9608022-9608041 None:intergenic 40.0%
TCACGCTTGGCTACATAAAT+TGG + chr8_2:9608030-9608049 None:intergenic 40.0%
AATGGTGTTTATGCCTTCAC+TGG - chr8_2:9608288-9608307 Msa1232980:intron 40.0%
ATGGTGTTTATGCCTTCACT+GGG - chr8_2:9608289-9608308 Msa1232980:intron 40.0%
TTTCTTGTAAAAAGGACCGG+AGG - chr8_2:9608472-9608491 Msa1232980:intron 40.0%
TTCTTGTAAAAAGGACCGGA+GGG - chr8_2:9608473-9608492 Msa1232980:intron 40.0%
ATGTAAACACATACTCCCTC+CGG + chr8_2:9608491-9608510 None:intergenic 40.0%
AGGCAGATGCAGATATTAAC+TGG + chr8_2:9608534-9608553 None:intergenic 40.0%
! AATGAGGCTTTTCCACCTAA+TGG - chr8_2:9608965-9608984 Msa1232980:intron 40.0%
! CAAAAGATTGGTCCATTAGG+TGG + chr8_2:9608980-9608999 None:intergenic 40.0%
!! CACCTAATGGACCAATCTTT+TGG - chr8_2:9608978-9608997 Msa1232980:intron 40.0%
TTTGGATTTGTCTCTTCTCG+TGG - chr8_2:9608996-9609015 Msa1232980:intron 40.0%
TTGGATTTGTCTCTTCTCGT+GGG - chr8_2:9608997-9609016 Msa1232980:intron 40.0%
TGGGCTTAAATCCTAACGAT+TGG - chr8_2:9609016-9609035 Msa1232980:intron 40.0%
GAAGAAGTTCACCAATCGTT+AGG + chr8_2:9609030-9609049 None:intergenic 40.0%
CGTCAAGAAATCTATTAGGC+GGG + chr8_2:9609096-9609115 None:intergenic 40.0%
ATTTACTTTCCCTTGTCCCA+TGG - chr8_2:9609139-9609158 Msa1232980:intron 40.0%
AATCCAAATCCATGGGACAA+GGG + chr8_2:9609151-9609170 None:intergenic 40.0%
AAATCCAAATCCATGGGACA+AGG + chr8_2:9609152-9609171 None:intergenic 40.0%
TACTTTCAGGATAAAGCAGC+AGG + chr8_2:9609188-9609207 None:intergenic 40.0%
! TTTGTACACGGATTGAAGGT+CGG - chr8_2:9609430-9609449 Msa1232980:intron 40.0%
CTGACTGAAATTGTTGTGCA+TGG - chr8_2:9609739-9609758 Msa1232980:intron 40.0%
AGGTGATGTTTCTCACTAAG+TGG - chr8_2:9609879-9609898 Msa1232980:intron 40.0%
AGTTCACAGTCCTTCAAAAG+TGG + chr8_2:9610017-9610036 None:intergenic 40.0%
AAGATAGATAAGGTAGGAGG+GGG + chr8_2:9610061-9610080 None:intergenic 40.0%
GGAAAGATAGATAAGGTAGG+AGG + chr8_2:9610064-9610083 None:intergenic 40.0%
! ACTTTTGACAGGATGCTTTG+AGG - chr8_2:9610158-9610177 Msa1232980:intron 40.0%
! CTACACATTTTGGACTTCCA+AGG - chr8_2:9610197-9610216 Msa1232980:intron 40.0%
AGGAAGATCAGAATTACCCT+TGG + chr8_2:9610217-9610236 None:intergenic 40.0%
!! CCCAAAAGGACACTTTTTAC+TGG - chr8_2:9610321-9610340 Msa1232980:intron 40.0%
GAAGGAAGATTATGCTGACA+TGG + chr8_2:9610365-9610384 None:intergenic 40.0%
AAATCAAGGCATGAAGCTGA+AGG + chr8_2:9610383-9610402 None:intergenic 40.0%
CAGTCACTATTATACACACC+TGG - chr8_2:9610503-9610522 Msa1232980:intron 40.0%
TCAGATGCATCATACCTTCA+AGG + chr8_2:9610746-9610765 None:intergenic 40.0%
! TGAAGGTATGATGCATCTGA+TGG - chr8_2:9610746-9610765 Msa1232980:intron 40.0%
CAACACAGTTGAACCAATGG+TGG - chr8_2:9604883-9604902 Msa1232980:three_prime_UTR 45.0%
AGAAGGAAGAAGACGAATGG+AGG + chr8_2:9604915-9604934 None:intergenic 45.0%
GGAAGAAGGAAGAAGACGAA+TGG + chr8_2:9604918-9604937 None:intergenic 45.0%
ACAAGAGAAGTGAGGGAAGA+AGG + chr8_2:9604932-9604951 None:intergenic 45.0%
AGATGGAAGAGGGACGTAAA+CGG + chr8_2:9604979-9604998 None:intergenic 45.0%
GAGAGGAAAAGAGATGGAAG+AGG + chr8_2:9604990-9605009 None:intergenic 45.0%
ACCGGGCATTTAGTAGAAGA+AGG + chr8_2:9605317-9605336 None:intergenic 45.0%
AAATGGTACAAACCAGGCCT+AGG - chr8_2:9605961-9605980 Msa1232980:intron 45.0%
AGTCAAATCACTGAAGGCAG+AGG - chr8_2:9606034-9606053 Msa1232980:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr8_2:9606138-9606157 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr8_2:9606139-9606158 None:intergenic 45.0%
! TTGGTGTTTGTGTCGGTGTT+TGG - chr8_2:9606189-9606208 Msa1232980:intron 45.0%
GATAGCAATTGTGGTCTTCC+TGG - chr8_2:9606581-9606600 Msa1232980:CDS 45.0%
TGCACAGTTGGTTAGGAGTT+AGG - chr8_2:9606955-9606974 Msa1232980:intron 45.0%
!! TAACAGACAGGTGCTGTTTC+AGG + chr8_2:9606988-9607007 None:intergenic 45.0%
TCAATTCAAGGCCAGTTTCG+AGG - chr8_2:9607120-9607139 Msa1232980:intron 45.0%
ATATCTCGCGTTGTTTGTGC+AGG + chr8_2:9607430-9607449 None:intergenic 45.0%
ATACACTATGGACAACACCC+TGG + chr8_2:9607499-9607518 None:intergenic 45.0%
GATGTAGATCGCATTCTTGC+TGG - chr8_2:9607697-9607716 Msa1232980:intron 45.0%
TCTCATGCTGATGCAATTGG+AGG - chr8_2:9607826-9607845 Msa1232980:intron 45.0%
TATCAGCTCTGTACCTTCCT+CGG + chr8_2:9608320-9608339 None:intergenic 45.0%
GGGTTGTAAGCGTCTACTAT+AGG + chr8_2:9609052-9609071 None:intergenic 45.0%
ACGCTTACAACCCTTTCAGT+AGG - chr8_2:9609059-9609078 Msa1232980:intron 45.0%
CGCTTACAACCCTTTCAGTA+GGG - chr8_2:9609060-9609079 Msa1232980:intron 45.0%
GCTTACAACCCTTTCAGTAG+GGG - chr8_2:9609061-9609080 Msa1232980:intron 45.0%
TTTCCCTTGTCCCATGGATT+TGG - chr8_2:9609145-9609164 Msa1232980:intron 45.0%
!! AAGCAGCAGGTGCTATTAAC+AGG + chr8_2:9609175-9609194 None:intergenic 45.0%
! TGTAATCATACCTGGTGCTG+CGG - chr8_2:9609366-9609385 Msa1232980:intron 45.0%
GAAATTGTTGTGCATGGGCT+TGG - chr8_2:9609745-9609764 Msa1232980:intron 45.0%
AGTTTACTCCACTACCAGTG+TGG - chr8_2:9609802-9609821 Msa1232980:intron 45.0%
TGTGGCATGGTCAAGGTTAT+CGG - chr8_2:9609820-9609839 Msa1232980:intron 45.0%
ATGTGTAGCTGAAGAGCGAT+CGG + chr8_2:9610185-9610204 None:intergenic 45.0%
! CGCTCTTCAGCTACACATTT+TGG - chr8_2:9610187-9610206 Msa1232980:intron 45.0%
!! TCATCCTTTTCAGGCCTTAG+AGG - chr8_2:9610281-9610300 Msa1232980:intron 45.0%
!! ACTTCCTCTAAGGCCTGAAA+AGG + chr8_2:9610288-9610307 None:intergenic 45.0%
TGCAACTGGCTGCAGTATAA+AGG + chr8_2:9610635-9610654 None:intergenic 45.0%
TAAAGGTTCGGAACTGCAAC+TGG + chr8_2:9610649-9610668 None:intergenic 45.0%
ATGCGCAACTGAGCTATGAT+GGG - chr8_2:9610823-9610842 Msa1232980:intron 45.0%
GAAAAAGGCAGAATAGCTGC+AGG + chr8_2:9611003-9611022 None:intergenic 45.0%
!! NNNNNNNNNNATACATAATA+AGG + chr8_2:9605059-9605078 None:intergenic 5.0%
ATGGAGGAGGTAACCACCAT+TGG + chr8_2:9604899-9604918 None:intergenic 50.0%
AGGAAGAAGACGAATGGAGG+AGG + chr8_2:9604912-9604931 None:intergenic 50.0%
GGACGTAAACGGCGTGAATA+GGG + chr8_2:9604968-9604987 None:intergenic 50.0%
GGGAGAGAGAGGAAAAGAGA+TGG + chr8_2:9604996-9605015 None:intergenic 50.0%
GAGAGGTTACGAGAGTGGAT+GGG + chr8_2:9605016-9605035 None:intergenic 50.0%
AGAGAGGTTACGAGAGTGGA+TGG + chr8_2:9605017-9605036 None:intergenic 50.0%
AGAGAGAGAGGTTACGAGAG+TGG + chr8_2:9605021-9605040 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr8_2:9606134-9606153 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr8_2:9606140-9606159 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr8_2:9606137-9606156 Msa1232980:CDS 50.0%
TCCGGTGGTTTCCCGAATTT+GGG - chr8_2:9607235-9607254 Msa1232980:intron 50.0%
ACCCAAATTCGGGAAACCAC+CGG + chr8_2:9607239-9607258 None:intergenic 50.0%
TGTAGCCAAGCGTGACTTTG+AGG - chr8_2:9608035-9608054 Msa1232980:intron 50.0%
AGAAGGAAAGAGCAGCGAAG+AGG + chr8_2:9608062-9608081 None:intergenic 50.0%
ATCAGCTCTGTACCTTCCTC+GGG + chr8_2:9608319-9608338 None:intergenic 50.0%
TACAACCCTTTCAGTAGGGG+TGG - chr8_2:9609064-9609083 Msa1232980:intron 50.0%
TGTCACCACCCCTACTGAAA+GGG + chr8_2:9609072-9609091 None:intergenic 50.0%
ATGTCACCACCCCTACTGAA+AGG + chr8_2:9609073-9609092 None:intergenic 50.0%
TAACCTTGACCATGCCACAC+TGG + chr8_2:9609819-9609838 None:intergenic 50.0%
TGTGTAGCTGAAGAGCGATC+GGG + chr8_2:9610184-9610203 None:intergenic 50.0%
TACACACCTGGTATCGTCTG+CGG - chr8_2:9610515-9610534 Msa1232980:intron 50.0%
GACTGCGATTGATGCAGCAT+CGG + chr8_2:9610587-9610606 None:intergenic 50.0%
CATCAATCGCAGTCACCTTG+TGG - chr8_2:9610593-9610612 Msa1232980:intron 50.0%
TCTCGTTGTTGGCACCTTGA+AGG - chr8_2:9610729-9610748 Msa1232980:CDS 50.0%
CATAGCTCAGTTGCGCATCA+AGG + chr8_2:9610821-9610840 None:intergenic 50.0%
GATGCGCAACTGAGCTATGA+TGG - chr8_2:9610822-9610841 Msa1232980:intron 50.0%
GGGACGTAAACGGCGTGAAT+AGG + chr8_2:9604969-9604988 None:intergenic 55.0%
TGGTACAAACCAGGCCTAGG+TGG - chr8_2:9605964-9605983 Msa1232980:intron 55.0%
ATGCTCAAACCACCTAGGCC+TGG + chr8_2:9605976-9605995 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+CGG + chr8_2:9606126-9606145 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr8_2:9606126-9606145 Msa1232980:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr8_2:9606132-9606151 Msa1232980:CDS 55.0%
CAGGGAGAACTCACTTTCCC+TGG + chr8_2:9606846-9606865 None:intergenic 55.0%
TCTATCACAGTGCTCTCCGG+TGG - chr8_2:9607220-9607239 Msa1232980:intron 55.0%
CTCCGGTGGTTTCCCGAATT+TGG - chr8_2:9607234-9607253 Msa1232980:intron 55.0%
CATGCTTCTCTCTTCTCCCC+AGG - chr8_2:9607958-9607977 Msa1232980:CDS 55.0%
GAGGACCTCAAAGTCACGCT+TGG + chr8_2:9608043-9608062 None:intergenic 55.0%
TCCTCGGGTAATCCCAGTGA+AGG + chr8_2:9608304-9608323 None:intergenic 55.0%
TCACTGGGATTACCCGAGGA+AGG - chr8_2:9608304-9608323 Msa1232980:intron 55.0%
ACTCCACTACCAGTGTGGCA+TGG - chr8_2:9609807-9609826 Msa1232980:intron 55.0%
TGACCATGCCACACTGGTAG+TGG + chr8_2:9609813-9609832 None:intergenic 55.0%
CTACCAGTGTGGCATGGTCA+AGG - chr8_2:9609813-9609832 Msa1232980:intron 55.0%
GGTCAAGGTTATCGGTCCCT+TGG - chr8_2:9609828-9609847 Msa1232980:intron 55.0%
! CGGTCCCTTGGTTTCCGTTT+TGG - chr8_2:9609840-9609859 Msa1232980:intron 55.0%
AGATAAGGTAGGAGGGGGAG+CGG + chr8_2:9610056-9610075 None:intergenic 55.0%
CGAGAGTGGATGGGAGAGAG+AGG + chr8_2:9605007-9605026 None:intergenic 60.0%
GTGTAGCCGACCCCACTTAG+TGG - chr8_2:9606125-9606144 Msa1232980:CDS 60.0%
ATTCGCCACGCGAATGCCAC+AGG - chr8_2:9606339-9606358 Msa1232980:intron 60.0%
GTGTTCCTGTGGCATTCGCG+TGG + chr8_2:9606347-9606366 None:intergenic 60.0%
GCCTTCACTGGGATTACCCG+AGG - chr8_2:9608300-9608319 Msa1232980:intron 60.0%
AATGCTGAGACCGCAGCACC+AGG + chr8_2:9609379-9609398 None:intergenic 60.0%
ACGCGACCGCAGACGATACC+AGG + chr8_2:9610524-9610543 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 9604824 9611137 9604824 ID=Msa1232980;Name=Msa1232980
chr8_2 mRNA 9604824 9611137 9604824 ID=Msa1232980-mRNA-1;Parent=Msa1232980;Name=Msa1232980-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.91|1|1|1|12|268|366
chr8_2 exon 9604824 9605210 9604824 ID=Msa1232980-mRNA-1:exon:3845;Parent=Msa1232980-mRNA-1
chr8_2 exon 9605619 9605667 9605619 ID=Msa1232980-mRNA-1:exon:3844;Parent=Msa1232980-mRNA-1
chr8_2 exon 9605742 9605792 9605742 ID=Msa1232980-mRNA-1:exon:3843;Parent=Msa1232980-mRNA-1
chr8_2 exon 9605915 9605978 9605915 ID=Msa1232980-mRNA-1:exon:3842;Parent=Msa1232980-mRNA-1
chr8_2 exon 9606081 9606157 9606081 ID=Msa1232980-mRNA-1:exon:3841;Parent=Msa1232980-mRNA-1
chr8_2 exon 9606514 9606633 9606514 ID=Msa1232980-mRNA-1:exon:3840;Parent=Msa1232980-mRNA-1
chr8_2 exon 9607905 9607981 9607905 ID=Msa1232980-mRNA-1:exon:3839;Parent=Msa1232980-mRNA-1
chr8_2 exon 9608114 9608169 9608114 ID=Msa1232980-mRNA-1:exon:3838;Parent=Msa1232980-mRNA-1
chr8_2 exon 9608705 9608746 9608705 ID=Msa1232980-mRNA-1:exon:3837;Parent=Msa1232980-mRNA-1
chr8_2 exon 9609570 9609682 9609570 ID=Msa1232980-mRNA-1:exon:3836;Parent=Msa1232980-mRNA-1
chr8_2 exon 9610627 9610757 9610627 ID=Msa1232980-mRNA-1:exon:3835;Parent=Msa1232980-mRNA-1
chr8_2 exon 9610936 9611137 9610936 ID=Msa1232980-mRNA-1:exon:3834;Parent=Msa1232980-mRNA-1
chr8_2 CDS 9610936 9611137 9610936 ID=Msa1232980-mRNA-1:cds;Parent=Msa1232980-mRNA-1
chr8_2 CDS 9610627 9610757 9610627 ID=Msa1232980-mRNA-1:cds;Parent=Msa1232980-mRNA-1
chr8_2 CDS 9609570 9609682 9609570 ID=Msa1232980-mRNA-1:cds;Parent=Msa1232980-mRNA-1
chr8_2 CDS 9608705 9608746 9608705 ID=Msa1232980-mRNA-1:cds;Parent=Msa1232980-mRNA-1
chr8_2 CDS 9608114 9608169 9608114 ID=Msa1232980-mRNA-1:cds;Parent=Msa1232980-mRNA-1
chr8_2 CDS 9607905 9607981 9607905 ID=Msa1232980-mRNA-1:cds;Parent=Msa1232980-mRNA-1
chr8_2 CDS 9606514 9606633 9606514 ID=Msa1232980-mRNA-1:cds;Parent=Msa1232980-mRNA-1
chr8_2 CDS 9606081 9606157 9606081 ID=Msa1232980-mRNA-1:cds;Parent=Msa1232980-mRNA-1
chr8_2 CDS 9605915 9605978 9605915 ID=Msa1232980-mRNA-1:cds;Parent=Msa1232980-mRNA-1
chr8_2 CDS 9605742 9605792 9605742 ID=Msa1232980-mRNA-1:cds;Parent=Msa1232980-mRNA-1
chr8_2 CDS 9605619 9605667 9605619 ID=Msa1232980-mRNA-1:cds;Parent=Msa1232980-mRNA-1
chr8_2 CDS 9605092 9605210 9605092 ID=Msa1232980-mRNA-1:cds;Parent=Msa1232980-mRNA-1
chr8_2 three_prime_UTR 9604824 9605091 9604824 ID=Msa1232980-mRNA-1:three_prime_utr;Parent=Msa1232980-mRNA-1
Gene Sequence

>Msa1232980

AGATTTTCAATTGGAGCTGTAATAATTTTGGTGATTTGTGTGTTGTGTAACTGTAGACACAACACAGTTGAACCAATGGTGGTTACCTCCTCCATTCGTCTTCTTCCTTCTTCCCTCACTTCTCTTGTTCATCATCGCTCTCCCTATTCACGCCGTTTACGTCCCTCTTCCATCTCTTTTCCTCTCTCTCCCATCCACTCTCTTTCTTCCAATGGAATTGGTGATGTTGAATTACCCGTTGATCAGTCACAAGTTATATTCATTGGAACTGGAACTAGTGAAGGAATTCCGAGAATTAGCTGCTTGACTAATCCTTCTTCTACTAAATGCCCGGTTTGTACAAAAGCTGCTAAACCGGGTGATAAGAATAGGAGACTTAACACAAGCATACTCATTCGCCACGCGAATGCCACAGGAACACACAATATTCTTATAGATGCTGGAAAATTTTTCTATCACAGTGCTCTCCGGTGGTTTCCCGAATTTGGGATAAGAACACTTGATGCAGTTATTATTACTCATTCTCATGCTGATGCAATTGGAGGTCTTGATGATCTTAGAGACTGGACTAACAATGTTCAGCCCTCCATTCCAATTTATGTAGCCAAGCGTGACTTTGAGGTGATGAAGAAGACCCATTATTATTTAGTTGATACAAGTGTAATCATACCTGGTGCTGCGGTCTCAGCATTGCAATTCAATAGCATATCTGAAGAACCTTTTTTTGTACACGGATTGAAGTTTACTCCACTACCAGTGTGGCATGGTCAAGGTTATCGGTCCCTTGGTTTCCGTTTTGGTAATATATGTTACATAAGTGATGTCAGTGAAATTCCTGAAGAAACTTATCCACTTTTGAAGGACTGTGAACTTCTAATAATGGATGCTTTGAGGCCCGATCGCTCTTCAGCTACACATTTTGGACTTCCAAGGGCCTTAGAGGAAGTGAGAAAAATTCAACCCAAAAGGACACTTTTTACTGGTATGATGCATCTGATGGATCATGAAGAAGTGAATGACTACCTTACAAAATTATTGGAGTCTGAGGGCCTTGATGCGCAACTGAGCTATGATGGGCTTTGTATAGCAGTCAGACTCTAA

Protein sequence

>Msa1232980

RFSIGAVIILVICVLCNCRHNTVEPMVVTSSIRLLPSSLTSLVHHRSPYSRRLRPSSISFPLSPIHSLSSNGIGDVELPVDQSQVIFIGTGTSEGIPRISCLTNPSSTKCPVCTKAAKPGDKNRRLNTSILIRHANATGTHNILIDAGKFFYHSALRWFPEFGIRTLDAVIITHSHADAIGGLDDLRDWTNNVQPSIPIYVAKRDFEVMKKTHYYLVDTSVIIPGAAVSALQFNSISEEPFFVHGLKFTPLPVWHGQGYRSLGFRFGNICYISDVSEIPEETYPLLKDCELLIMDALRPDRSSATHFGLPRALEEVRKIQPKRTLFTGMMHLMDHEEVNDYLTKLLESEGLDAQLSYDGLCIAVRL*