AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1275500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1275500 MtrunA17_Chr8g0342441 96.784 342 9 2 26 366 1 341 0.0 677
Msa1275500 MtrunA17_Chr2g0285411 41.250 320 164 11 69 366 3 320 2.51e-66 212
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1275500 AT3G13800.1 70.588 340 89 4 37 366 23 361 1.19e-172 485
Msa1275500 AT3G13800.4 70.588 340 89 4 37 366 23 361 1.19e-172 485
Msa1275500 AT3G13800.3 80.000 280 54 2 88 366 1 279 2.30e-167 468
Msa1275500 AT3G13800.2 80.000 280 54 2 88 366 1 279 2.30e-167 468
Msa1275500 AT1G30300.1 38.730 315 170 10 74 366 11 324 4.93e-60 196
Msa1275500 AT1G30300.3 38.730 315 170 10 74 366 11 324 4.93e-60 196
Msa1275500 AT1G30300.2 38.730 315 170 10 74 366 11 324 4.93e-60 196
Msa1275500 AT1G30300.4 38.730 315 170 10 74 366 11 324 4.93e-60 196
Msa1275500 AT4G03610.4 39.172 314 159 11 81 366 9 318 1.41e-56 187
Msa1275500 AT4G03610.1 37.261 314 150 12 81 366 9 303 4.09e-48 165
Msa1275500 AT4G03610.2 39.130 276 136 11 81 328 9 280 3.75e-46 159
Msa1275500 AT4G03610.3 39.592 245 118 10 81 299 9 249 8.96e-41 144

Find 92 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCGGTGGTTTCCCGAATT+TGG 0.079143 8_3:-9457989 Msa1275500:CDS
CGCTCTTCAGCTACACATTT+TGG 0.129908 8_3:-9455034 Msa1275500:CDS
AATTGGAGCTGTAATAATTT+TGG 0.157569 8_3:-9460322 Msa1275500:CDS
TGACTACCTTACAAAATTAT+TGG 0.195753 8_3:-9454436 Msa1275500:CDS
CGGTCCCTTGGTTTCCGTTT+TGG 0.200037 8_3:-9455381 Msa1275500:CDS
TCACGCTTGGCTACATAAAT+TGG 0.214243 8_3:+9457194 None:intergenic
TGATACTATACATATGTTAT+AGG 0.281663 8_3:-9454155 Msa1275500:three_prime_UTR
TTGTATCAACTAAATAATAA+TGG 0.283710 8_3:+9455879 None:intergenic
AAGAATGGTGATAGGGAAAA+AGG 0.301564 8_3:+9454206 None:intergenic
TCCGGTGGTTTCCCGAATTT+GGG 0.301656 8_3:-9457988 Msa1275500:intron
ACTACAGTTTCACTCATAAA+AGG 0.301817 8_3:-9454352 Msa1275500:three_prime_UTR
GGGACGTAAACGGCGTGAAT+AGG 0.347516 8_3:+9460188 None:intergenic
AAGAAATAAAGAATGGTGAT+AGG 0.348889 8_3:+9454198 None:intergenic
CAGGTAAACTAACCCAAATT+CGG 0.349548 8_3:+9457976 None:intergenic
CAGTCACAAGTTATATTCAT+TGG 0.350720 8_3:-9460001 Msa1275500:CDS
TTGTACAAAAGCTGCTAAAC+CGG 0.368677 8_3:-9458942 Msa1275500:CDS
GGACGTAAACGGCGTGAATA+GGG 0.375208 8_3:+9460189 None:intergenic
CATTCTCATGCTGATGCAAT+TGG 0.382278 8_3:-9457400 Msa1275500:CDS
AAAAGTGGATAAGTTTCTTC+AGG 0.386969 8_3:+9455222 None:intergenic
CAAGTTATATTCATTGGAAC+TGG 0.391006 8_3:-9459995 Msa1275500:CDS
AGAGAGGTTACGAGAGTGGA+TGG 0.395924 8_3:+9460140 None:intergenic
ACAAGAGAAGTGAGGGAAGA+AGG 0.401170 8_3:+9460225 None:intergenic
TGTATCAACTAAATAATAAT+GGG 0.405339 8_3:+9455880 None:intergenic
TTGGTAATATATGTTACATA+AGG 0.409235 8_3:-9455362 Msa1275500:intron
CACAATATTCTTATAGATGC+TGG 0.417952 8_3:-9458857 Msa1275500:CDS
TGTAGCCAAGCGTGACTTTG+AGG 0.419835 8_3:-9457186 Msa1275500:intron
GGACTGTGAACTTCTAATAA+TGG 0.420963 8_3:-9455196 Msa1275500:intron
ATAACTTGTGACTGATCAAC+GGG 0.421460 8_3:+9460010 None:intergenic
TGTGGCATGGTCAAGGTTAT+CGG 0.423742 8_3:-9455401 Msa1275500:CDS
GCAGTTTCTTCCAATGGAAT+TGG 0.430423 8_3:-9460046 Msa1275500:intron
AGAGAGAGAGGTTACGAGAG+TGG 0.450309 8_3:+9460136 None:intergenic
CTAAACCGGGTGATAAGAAT+AGG 0.450434 8_3:-9458928 Msa1275500:CDS
GATGCGCAACTGAGCTATGA+TGG 0.461379 8_3:-9454399 Msa1275500:CDS
CGAGAGTGGATGGGAGAGAG+AGG 0.467527 8_3:+9460150 None:intergenic
GGTCAAGGTTATCGGTCCCT+TGG 0.481205 8_3:-9455393 Msa1275500:CDS
TTCAACATCACCAATTCCAT+TGG 0.484673 8_3:+9460036 None:intergenic
TGTGTTGCAGTTTCTTCCAA+TGG 0.485288 8_3:-9460052 Msa1275500:intron
GAGAGGAAAAGAGATGGAAG+AGG 0.486755 8_3:+9460167 None:intergenic
AGAAATAAAGAATGGTGATA+GGG 0.486767 8_3:+9454199 None:intergenic
TACAAAATTATTGGAGTCTG+AGG 0.491029 8_3:-9454427 Msa1275500:CDS
AGATGGAAGAGGGACGTAAA+CGG 0.493124 8_3:+9460178 None:intergenic
GGTAAAGAAGAAATAAAGAA+TGG 0.495634 8_3:+9454191 None:intergenic
AGAAGGAAGAAGACGAATGG+AGG 0.497572 8_3:+9460242 None:intergenic
GGGAGAGAGAGGAAAAGAGA+TGG 0.502379 8_3:+9460161 None:intergenic
AGTTCACAGTCCTTCAAAAG+TGG 0.504029 8_3:+9455207 None:intergenic
AGAGGAAAAGAGATGGAAGA+GGG 0.505567 8_3:+9460168 None:intergenic
AGGAAGAAGACGAATGGAGG+AGG 0.505636 8_3:+9460245 None:intergenic
ACCGGGCATTTAGTAGAAGA+AGG 0.507183 8_3:+9459932 None:intergenic
TGACCATGCCACACTGGTAG+TGG 0.508732 8_3:+9455411 None:intergenic
TCCTTCTTCTACTAAATGCC+CGG 0.510449 8_3:-9459933 Msa1275500:intron
TGTAACATATATTACCAAAA+CGG 0.516666 8_3:+9455367 None:intergenic
AGGTAAACTAACCCAAATTC+GGG 0.517181 8_3:+9457977 None:intergenic
TCTCATGCTGATGCAATTGG+AGG 0.529678 8_3:-9457397 Msa1275500:intron
ATGTGTAGCTGAAGAGCGAT+CGG 0.537686 8_3:+9455039 None:intergenic
GAGAGGTTACGAGAGTGGAT+GGG 0.540984 8_3:+9460141 None:intergenic
CATAGCTCAGTTGCGCATCA+AGG 0.543483 8_3:+9454403 None:intergenic
ATTCGCCACGCGAATGCCAC+AGG 0.550713 8_3:-9458884 Msa1275500:CDS
TTGAAATGAATGTCATTACC+AGG 0.551112 8_3:-9454273 Msa1275500:three_prime_UTR
GTCTTGATGATCTTAGAGAC+TGG 0.552009 8_3:-9457241 Msa1275500:CDS
GAGGACCTCAAAGTCACGCT+TGG 0.556366 8_3:+9457181 None:intergenic
CTTGGCTACATAAATTGGAA+TGG 0.558295 8_3:+9457199 None:intergenic
GGAAGAAGGAAGAAGACGAA+TGG 0.560651 8_3:+9460239 None:intergenic
AATGCTGAGACCGCAGCACC+AGG 0.563087 8_3:+9455845 None:intergenic
TTAGTCAAGCAGCTAACTCT+CGG 0.563225 8_3:+9459956 None:intergenic
ATGGAGGAGGTAACCACCAT+TGG 0.563532 8_3:+9460258 None:intergenic
ATGATGAACAAGAGAAGTGA+GGG 0.565176 8_3:+9460218 None:intergenic
ATTGGAACTGGAACTAGTGA+AGG 0.568637 8_3:-9459983 Msa1275500:CDS
TGTGTAGCTGAAGAGCGATC+GGG 0.569534 8_3:+9455040 None:intergenic
TGAAGGTATGATGCATCTGA+TGG 0.575148 8_3:-9454475 Msa1275500:intron
TGTACAAAAGCTGCTAAACC+GGG 0.576014 8_3:-9458941 Msa1275500:CDS
GCTACATAAATTGGAATGGA+GGG 0.577865 8_3:+9457203 None:intergenic
AGTCTCCTATTCTTATCACC+CGG 0.577902 8_3:+9458923 None:intergenic
TATAACTTGTGACTGATCAA+CGG 0.580151 8_3:+9460009 None:intergenic
ACCCAAATTCGGGAAACCAC+CGG 0.588739 8_3:+9457987 None:intergenic
CTACCAGTGTGGCATGGTCA+AGG 0.589078 8_3:-9455408 Msa1275500:CDS
ATGCGCAACTGAGCTATGAT+GGG 0.595409 8_3:-9454398 Msa1275500:CDS
TATTACCAAAACGGAAACCA+AGG 0.596749 8_3:+9455376 None:intergenic
TCTATCACAGTGCTCTCCGG+TGG 0.598907 8_3:-9458003 Msa1275500:CDS
GGCTACATAAATTGGAATGG+AGG 0.601861 8_3:+9457202 None:intergenic
ACAAAATTATTGGAGTCTGA+GGG 0.606652 8_3:-9454426 Msa1275500:CDS
TAGTATCATAGTGTTAAGAG+AGG 0.612714 8_3:+9454170 None:intergenic
ACACAACACAGTTGAACCAA+TGG 0.614022 8_3:-9460274 Msa1275500:CDS
AAGAATATTGTGTGTTCCTG+TGG 0.620931 8_3:+9458868 None:intergenic
TAACCTTGACCATGCCACAC+TGG 0.621640 8_3:+9455405 None:intergenic
TGTAATCATACCTGGTGCTG+CGG 0.622886 8_3:-9455855 Msa1275500:CDS
GATACAAGTGTAATCATACC+TGG 0.624797 8_3:-9455863 Msa1275500:CDS
ACTCCACTACCAGTGTGGCA+TGG 0.653555 8_3:-9455414 Msa1275500:CDS
ATTACCAAAACGGAAACCAA+GGG 0.656302 8_3:+9455377 None:intergenic
GATGATGAACAAGAGAAGTG+AGG 0.656452 8_3:+9460217 None:intergenic
GTGTTCCTGTGGCATTCGCG+TGG 0.658076 8_3:+9458879 None:intergenic
CAACACAGTTGAACCAATGG+TGG 0.660001 8_3:-9460271 Msa1275500:CDS
AGTTTACTCCACTACCAGTG+TGG 0.676456 8_3:-9455419 Msa1275500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTACCTTTTTTAA+TGG - chr8_3:9454763-9454782 Msa1275500:intron 10.0%
!! ATTGTAATAACCATTAAAAA+AGG + chr8_3:9454776-9454795 None:intergenic 15.0%
!!! CAAATTATGATTTTATGATA+TGG + chr8_3:9454823-9454842 None:intergenic 15.0%
!! ATAAAATCATAATTTGAGTA+TGG - chr8_3:9454827-9454846 Msa1275500:intron 15.0%
!!! ATTATTTTTGCCTTTTTTTA+TGG - chr8_3:9455460-9455479 Msa1275500:intron 15.0%
!!! AGCATTGATTTTTTTTAATA+CGG + chr8_3:9457424-9457443 None:intergenic 15.0%
!! CATTAGATAAATTATGTATT+TGG + chr8_3:9457649-9457668 None:intergenic 15.0%
!!! ATACATTTAAGATAATTTTC+AGG - chr8_3:9458016-9458035 Msa1275500:intron 15.0%
!!! TTAAATCATTTTATACTTTC+AGG + chr8_3:9458416-9458435 None:intergenic 15.0%
!! TGTATCAACTAAATAATAAT+GGG + chr8_3:9458559-9458578 None:intergenic 15.0%
!! TTGTATCAACTAAATAATAA+TGG + chr8_3:9458560-9458579 None:intergenic 15.0%
!!! AATTTTTTAATGTGAAAATG+AGG + chr8_3:9459311-9459330 None:intergenic 15.0%
!! ACATTAAAAAATTAGAACTA+TGG - chr8_3:9459318-9459337 Msa1275500:intron 15.0%
!!! GTAATTATGGTTTTAAATAA+AGG + chr8_3:9459881-9459900 None:intergenic 15.0%
!! ATTGATGAAATATGTAATTA+TGG + chr8_3:9459894-9459913 None:intergenic 15.0%
!!! ATGAATTTGATGATAAGATA+AGG + chr8_3:9454544-9454563 None:intergenic 20.0%
!!! ATTTTCTTAAGTTATCATCA+GGG - chr8_3:9454660-9454679 Msa1275500:intron 20.0%
!! TAAGTTTATCGATATTGTTT+CGG + chr8_3:9454903-9454922 None:intergenic 20.0%
!!! TTAAGTTGAGGAAAATTTAT+AGG - chr8_3:9455046-9455065 Msa1275500:CDS 20.0%
!!! TAAGTTGAGGAAAATTTATA+GGG - chr8_3:9455047-9455066 Msa1275500:CDS 20.0%
!!! TCTTTCTAATTAGTTTTTCT+AGG + chr8_3:9455277-9455296 None:intergenic 20.0%
!! AGATTAATGATAGAACTTTA+TGG - chr8_3:9455302-9455321 Msa1275500:intron 20.0%
!! TGGATTGAAATCAAAATAAA+AGG + chr8_3:9455681-9455700 None:intergenic 20.0%
!!! TAGAGTTTCTTTTCTTTTTA+TGG - chr8_3:9455733-9455752 Msa1275500:intron 20.0%
!! AAATTAATAGATAGCAATTG+TGG - chr8_3:9455785-9455804 Msa1275500:intron 20.0%
!! AACAGAAAAAATAATTGAAC+AGG + chr8_3:9456482-9456501 None:intergenic 20.0%
!! TTTGTGCAAGTATTATAATT+GGG - chr8_3:9456748-9456767 Msa1275500:intron 20.0%
!! TTTATGTCAACATGTTTAAA+TGG - chr8_3:9457485-9457504 Msa1275500:intron 20.0%
!!! GTAAATTGTTTCTTGTAAAT+AGG + chr8_3:9457580-9457599 None:intergenic 20.0%
!!! TATACATCTTTTAAATGTTG+AGG + chr8_3:9457769-9457788 None:intergenic 20.0%
!! TTTGTAGTTAAAAATTGAGA+AGG - chr8_3:9457795-9457814 Msa1275500:intron 20.0%
!! AAATTATAATACAGAACCTT+TGG + chr8_3:9457896-9457915 None:intergenic 20.0%
!!! ATAATAAGCTTGATTTTGTT+AGG - chr8_3:9458121-9458140 Msa1275500:intron 20.0%
!! ATAATATAATGAAATGATCG+AGG - chr8_3:9458682-9458701 Msa1275500:intron 20.0%
!! TAATATAATGAAATGATCGA+GGG - chr8_3:9458683-9458702 Msa1275500:intron 20.0%
!! CAATCAATTGATGTATTTAA+AGG - chr8_3:9458755-9458774 Msa1275500:intron 20.0%
!! TCAGAAATTACGAATTTAAT+AGG + chr8_3:9458938-9458957 None:intergenic 20.0%
!! TGTAACATATATTACCAAAA+CGG + chr8_3:9459072-9459091 None:intergenic 20.0%
!!! TTGGTAATATATGTTACATA+AGG - chr8_3:9459074-9459093 Msa1275500:intron 20.0%
!!! ATATGTATTGACAAAAAATC+TGG + chr8_3:9459149-9459168 None:intergenic 20.0%
!! TAAAAATCAACAAATGTGAA+AGG + chr8_3:9459452-9459471 None:intergenic 20.0%
!!! ACATTTGTTGATTTTTATCT+TGG - chr8_3:9459455-9459474 Msa1275500:intron 20.0%
!! AGTTCATTGATCAAATATTT+AGG - chr8_3:9459640-9459659 Msa1275500:intron 20.0%
!! GTAGTAACTAAAAAAAATTG+TGG - chr8_3:9459695-9459714 Msa1275500:intron 20.0%
!!! TATGGTTTTAAATAAAGGTT+CGG + chr8_3:9459876-9459895 None:intergenic 20.0%
!! TGATACTATACATATGTTAT+AGG - chr8_3:9460281-9460300 Msa1275500:CDS 20.0%
!! AATTGGAGCTGTAATAATTT+TGG - chr8_3:9454114-9454133 Msa1275500:three_prime_UTR 25.0%
!!! AAGGTTGATAATTATAGTAC+CGG + chr8_3:9454525-9454544 None:intergenic 25.0%
!! CATTTTCTTAAGTTATCATC+AGG - chr8_3:9454659-9454678 Msa1275500:intron 25.0%
!! TTGAAGTATGATGTTTGTTA+AGG - chr8_3:9454732-9454751 Msa1275500:intron 25.0%
!! TGAAGTATGATGTTTGTTAA+GGG - chr8_3:9454733-9454752 Msa1275500:intron 25.0%
! TATGATATGGTAAGATAAGA+TGG + chr8_3:9454810-9454829 None:intergenic 25.0%
!! ATTAAGTATCACTTAAGTTG+AGG - chr8_3:9455034-9455053 Msa1275500:CDS 25.0%
! CTAATGCTATAATTTCATGT+TGG + chr8_3:9455125-9455144 None:intergenic 25.0%
! CCTACAATAACCATAAAAAA+AGG + chr8_3:9455473-9455492 None:intergenic 25.0%
!!! CCTTTTTTTATGGTTATTGT+AGG - chr8_3:9455470-9455489 Msa1275500:intron 25.0%
! ATATGTATTGCAATTATGCT+AGG - chr8_3:9455629-9455648 Msa1275500:intron 25.0%
! ATTATGCTAGGTTATGAATT+AGG - chr8_3:9455641-9455660 Msa1275500:intron 25.0%
! AAGAAAAGAAACTCTAACTT+TGG + chr8_3:9455729-9455748 None:intergenic 25.0%
! TTATACAAGCAAAATATTCC+AGG + chr8_3:9455815-9455834 None:intergenic 25.0%
! CGATTAATATATAGTGTGTT+AGG - chr8_3:9456258-9456277 Msa1275500:intron 25.0%
! AAACTGAGAAATTCAATTCA+AGG - chr8_3:9456321-9456340 Msa1275500:intron 25.0%
!!! CTATTTTCCATATTGCTTTT+CGG - chr8_3:9456531-9456550 Msa1275500:intron 25.0%
! AGTACTCTACAACTTTAATA+AGG - chr8_3:9456557-9456576 Msa1275500:intron 25.0%
! GTACTCTACAACTTTAATAA+GGG - chr8_3:9456558-9456577 Msa1275500:intron 25.0%
! CTTTGTGCAAGTATTATAAT+TGG - chr8_3:9456747-9456766 Msa1275500:intron 25.0%
! AATTGGGATTATCAAATATC+TGG - chr8_3:9456764-9456783 Msa1275500:intron 25.0%
!!! TTTTTGTCTCTTAAGTTGAT+AGG + chr8_3:9456804-9456823 None:intergenic 25.0%
! TAATACTTTCTAATACTCTC+TGG - chr8_3:9457072-9457091 Msa1275500:intron 25.0%
!! TTGAAAGCTTTAATTTCAGA+AGG + chr8_3:9457294-9457313 None:intergenic 25.0%
! ATATATATGTCTAAGAGACT+AGG - chr8_3:9457342-9457361 Msa1275500:intron 25.0%
! GCTATTATTAAGATCAAATG+TGG - chr8_3:9457372-9457391 Msa1275500:intron 25.0%
!! TTTTTAATACGGTGATATGT+GGG + chr8_3:9457413-9457432 None:intergenic 25.0%
!!! TTTTTTAATACGGTGATATG+TGG + chr8_3:9457414-9457433 None:intergenic 25.0%
! GTCAAATGTTTCTTGTAAAA+AGG - chr8_3:9457679-9457698 Msa1275500:intron 25.0%
! TTTGGATCAAGATATTATAC+AGG + chr8_3:9457878-9457897 None:intergenic 25.0%
! TGTATAATATCTTGATCCAA+AGG - chr8_3:9457877-9457896 Msa1275500:intron 25.0%
!! CTGTATTATAATTTGTGTGA+TGG - chr8_3:9457902-9457921 Msa1275500:intron 25.0%
!!! TATGATAGCTTTTGAAATTC+AGG - chr8_3:9457939-9457958 Msa1275500:intron 25.0%
!!! ATGATAGCTTTTGAAATTCA+GGG - chr8_3:9457940-9457959 Msa1275500:intron 25.0%
!!! TAGAAAAATGAAGTGTTTTC+AGG - chr8_3:9458055-9458074 Msa1275500:intron 25.0%
!!! AGAAAAATGAAGTGTTTTCA+GGG - chr8_3:9458056-9458075 Msa1275500:intron 25.0%
! ACACTTTATCTACTCAATAA+GGG + chr8_3:9458150-9458169 None:intergenic 25.0%
! TAAACGTCAAGAAATCTATT+AGG + chr8_3:9458315-9458334 None:intergenic 25.0%
! TTAAAATGCAGTTATAAGAG+TGG + chr8_3:9458837-9458856 None:intergenic 25.0%
!!! CAGTGTAAATTAGTTTTACA+CGG + chr8_3:9458905-9458924 None:intergenic 25.0%
! AGTTTATGGAAAGATAGATA+AGG + chr8_3:9459286-9459305 None:intergenic 25.0%
!! ATAATGTGTATACTTTTGAC+AGG - chr8_3:9459362-9459381 Msa1275500:intron 25.0%
! TGACTACCTTACAAAATTAT+TGG - chr8_3:9460000-9460019 Msa1275500:CDS 25.0%
! AGAAATAAAGAATGGTGATA+GGG + chr8_3:9460240-9460259 None:intergenic 25.0%
! AAGAAATAAAGAATGGTGAT+AGG + chr8_3:9460241-9460260 None:intergenic 25.0%
! GGTAAAGAAGAAATAAAGAA+TGG + chr8_3:9460248-9460267 None:intergenic 25.0%
AGCGAAACTCATACATAATA+AGG + chr8_3:9454349-9454368 None:intergenic 30.0%
! TATAACTTGTGACTGATCAA+CGG + chr8_3:9454430-9454449 None:intergenic 30.0%
CAGTCACAAGTTATATTCAT+TGG - chr8_3:9454435-9454454 Msa1275500:CDS 30.0%
CAAGTTATATTCATTGGAAC+TGG - chr8_3:9454441-9454460 Msa1275500:CDS 30.0%
!! AGGTTGATAATTATAGTACC+GGG + chr8_3:9454524-9454543 None:intergenic 30.0%
ATATGGTAAGATAAGATGGT+AGG + chr8_3:9454806-9454825 None:intergenic 30.0%
TTTGTTCAGTGCTTCATTTA+TGG - chr8_3:9454984-9455003 Msa1275500:intron 30.0%
TAATAGCGGTAATGTTGTAT+GGG - chr8_3:9455076-9455095 Msa1275500:intron 30.0%
! TTGGTTTAGGATTTCTATTG+AGG - chr8_3:9455421-9455440 Msa1275500:intron 30.0%
CACAATATTCTTATAGATGC+TGG - chr8_3:9455579-9455598 Msa1275500:intron 30.0%
ACATCAAGAAATCACAAACT+TGG + chr8_3:9455701-9455720 None:intergenic 30.0%
! GTTGATTCATTTACAAGTGA+AGG - chr8_3:9455863-9455882 Msa1275500:CDS 30.0%
TGCATTACAAAACCTTTCAA+CGG - chr8_3:9455915-9455934 Msa1275500:intron 30.0%
TGATATATCATATCCTGACT+AGG + chr8_3:9455980-9455999 None:intergenic 30.0%
TAGTCAGGATATGATATATC+AGG - chr8_3:9455979-9455998 Msa1275500:intron 30.0%
AGTCAGGATATGATATATCA+GGG - chr8_3:9455980-9455999 Msa1275500:intron 30.0%
TATGAATTATTCGCTACTCT+AGG + chr8_3:9456018-9456037 None:intergenic 30.0%
TTTCCTGAAATACAAGAACA+GGG + chr8_3:9456077-9456096 None:intergenic 30.0%
ATTTCCTGAAATACAAGAAC+AGG + chr8_3:9456078-9456097 None:intergenic 30.0%
GATACACATTACAATGAGAT+TGG - chr8_3:9456106-9456125 Msa1275500:intron 30.0%
!!! AGCTTTATTTTGTAACAGAC+AGG + chr8_3:9456213-9456232 None:intergenic 30.0%
AATCGAGTTATAGTCAAGAT+AGG + chr8_3:9456243-9456262 None:intergenic 30.0%
AAATAGACATGCATACAGTA+TGG - chr8_3:9456281-9456300 Msa1275500:intron 30.0%
!!! ATTTTTGTTTTCCTCGAAAC+TGG + chr8_3:9456347-9456366 None:intergenic 30.0%
CGAAAAGCAATATGGAAAAT+AGG + chr8_3:9456533-9456552 None:intergenic 30.0%
! TACTTTTCCGAAAAGCAATA+TGG + chr8_3:9456541-9456560 None:intergenic 30.0%
CTACAACTTTAATAAGGGTT+AGG - chr8_3:9456563-9456582 Msa1275500:intron 30.0%
GGTTCATATAAAGTTGTAGT+GGG - chr8_3:9456685-9456704 Msa1275500:intron 30.0%
TATATATAGACAACAAGCAG+AGG + chr8_3:9457329-9457348 None:intergenic 30.0%
ATCAAATGTGGAAACTGTAA+GGG - chr8_3:9457384-9457403 Msa1275500:intron 30.0%
! TTGTTTCTTGTAAATAGGAC+CGG + chr8_3:9457575-9457594 None:intergenic 30.0%
ATGTTTCTTGTAAAAAGGAC+CGG - chr8_3:9457684-9457703 Msa1275500:intron 30.0%
CACACTTTATCTACTCAATA+AGG + chr8_3:9458151-9458170 None:intergenic 30.0%
AAGTGTGATATTAAGCAATG+AGG - chr8_3:9458164-9458183 Msa1275500:intron 30.0%
AAGAGACAAATCCAAAAGAT+TGG + chr8_3:9458207-9458226 None:intergenic 30.0%
TAACAAATGATTCATGAGTC+CGG + chr8_3:9458454-9458473 None:intergenic 30.0%
!!! GAAGAACCTTTTTTTGTACA+CGG - chr8_3:9458633-9458652 Msa1275500:intron 30.0%
TTCAATCCGTGTACAAAAAA+AGG + chr8_3:9458642-9458661 None:intergenic 30.0%
!!! TTTTTTTGTACACGGATTGA+AGG - chr8_3:9458641-9458660 Msa1275500:intron 30.0%
AAAAAATGAAACACTCCCAT+TGG - chr8_3:9458875-9458894 Msa1275500:CDS 30.0%
AAAAGTGGATAAGTTTCTTC+AGG + chr8_3:9459217-9459236 None:intergenic 30.0%
!! AGAAACTTATCCACTTTTGA+AGG - chr8_3:9459219-9459238 Msa1275500:intron 30.0%
TATGGAAAGATAGATAAGGT+AGG + chr8_3:9459282-9459301 None:intergenic 30.0%
TATGGCATAGTATTTCTCTT+TGG - chr8_3:9459336-9459355 Msa1275500:intron 30.0%
! TTATTCTGATCATCCTTTTC+AGG - chr8_3:9459487-9459506 Msa1275500:intron 30.0%
! AATTTTTCTCACTTCCTCTA+AGG + chr8_3:9459513-9459532 None:intergenic 30.0%
TGAGAAAAATTCAACCCAAA+AGG - chr8_3:9459522-9459541 Msa1275500:intron 30.0%
CTGTTGCATAAAGAAAATCA+AGG + chr8_3:9459612-9459631 None:intergenic 30.0%
GAATATCTCCTAAAGTTCAT+AGG - chr8_3:9459673-9459692 Msa1275500:intron 30.0%
AGTTACTACCTATGAACTTT+AGG + chr8_3:9459684-9459703 None:intergenic 30.0%
! CGTTGCAATCTTTTATATTG+TGG - chr8_3:9459756-9459775 Msa1275500:intron 30.0%
! AATTTTTGATGTCTCGTTGT+TGG - chr8_3:9459933-9459952 Msa1275500:intron 30.0%
! CAGACTCCAATAATTTTGTA+AGG + chr8_3:9460009-9460028 None:intergenic 30.0%
TACAAAATTATTGGAGTCTG+AGG - chr8_3:9460009-9460028 Msa1275500:CDS 30.0%
ACAAAATTATTGGAGTCTGA+GGG - chr8_3:9460010-9460029 Msa1275500:CDS 30.0%
ACTACAGTTTCACTCATAAA+AGG - chr8_3:9460084-9460103 Msa1275500:intron 30.0%
TTGAAATGAATGTCATTACC+AGG - chr8_3:9460163-9460182 Msa1275500:CDS 30.0%
!!! TGTCATTACCAGGTTTTTTA+TGG - chr8_3:9460173-9460192 Msa1275500:CDS 30.0%
TGTACATACCATAAAAAACC+TGG + chr8_3:9460184-9460203 None:intergenic 30.0%
! TTATGGTATGTACATTTTGC+AGG - chr8_3:9460190-9460209 Msa1275500:CDS 30.0%
TAGTATCATAGTGTTAAGAG+AGG + chr8_3:9460269-9460288 None:intergenic 30.0%
ATGATGAACAAGAGAAGTGA+GGG + chr8_3:9454221-9454240 None:intergenic 35.0%
TTCAACATCACCAATTCCAT+TGG + chr8_3:9454403-9454422 None:intergenic 35.0%
! ATAACTTGTGACTGATCAAC+GGG + chr8_3:9454429-9454448 None:intergenic 35.0%
TTATAGGGTAGCTGTAATAG+CGG - chr8_3:9455062-9455081 Msa1275500:intron 35.0%
GTAATAGCGGTAATGTTGTA+TGG - chr8_3:9455075-9455094 Msa1275500:intron 35.0%
TATAGCATTAGAGAGAGAGT+TGG - chr8_3:9455134-9455153 Msa1275500:intron 35.0%
ATAGCATTAGAGAGAGAGTT+GGG - chr8_3:9455135-9455154 Msa1275500:intron 35.0%
TAGTTGAAATGGTACAAACC+AGG - chr8_3:9455168-9455187 Msa1275500:intron 35.0%
!! GTTGTTGTTGTTTATGTGTC+TGG - chr8_3:9455372-9455391 Msa1275500:CDS 35.0%
TTATGTGTCTGGATCTTGTT+TGG - chr8_3:9455383-9455402 Msa1275500:CDS 35.0%
!! ATCTTGTTTGGTGTTTGTGT+CGG - chr8_3:9455395-9455414 Msa1275500:CDS 35.0%
TTGTACAAAAGCTGCTAAAC+CGG - chr8_3:9455494-9455513 Msa1275500:intron 35.0%
AAGAATATTGTGTGTTCCTG+TGG + chr8_3:9455571-9455590 None:intergenic 35.0%
TGGACTCATGAAAACTCTAA+TGG - chr8_3:9455753-9455772 Msa1275500:intron 35.0%
CTATGAATTAAGCCGTTGAA+AGG + chr8_3:9455930-9455949 None:intergenic 35.0%
CAGAAAAAGAGAGAAAACCA+GGG - chr8_3:9455950-9455969 Msa1275500:intron 35.0%
! ATTGGTGTTTATGCAAAGAG+TGG - chr8_3:9456124-9456143 Msa1275500:intron 35.0%
CTCACGTGTTTGCTTAATTT+GGG - chr8_3:9456377-9456396 Msa1275500:intron 35.0%
AGGTAAACTAACCCAAATTC+GGG + chr8_3:9456462-9456481 None:intergenic 35.0%
CAGGTAAACTAACCCAAATT+CGG + chr8_3:9456463-9456482 None:intergenic 35.0%
GTAGAATGGAATATTTGAGC+AGG - chr8_3:9456594-9456613 Msa1275500:intron 35.0%
! GCAGGTTATCTATTCTGTTT+TGG + chr8_3:9456625-9456644 None:intergenic 35.0%
TCATATATGCACCATTAGAG+CGG - chr8_3:9456664-9456683 Msa1275500:intron 35.0%
CTTTATATGAACCGCTCTAA+TGG + chr8_3:9456678-9456697 None:intergenic 35.0%
CGGTTCATATAAAGTTGTAG+TGG - chr8_3:9456684-9456703 Msa1275500:intron 35.0%
CAAGCTTAACTCATACACTA+TGG + chr8_3:9456724-9456743 None:intergenic 35.0%
TAGTGTATGAGTTAAGCTTG+TGG - chr8_3:9456724-9456743 Msa1275500:intron 35.0%
! TGACTAGTTGTATTTCTGTC+AGG - chr8_3:9456983-9457002 Msa1275500:intron 35.0%
GCTACATAAATTGGAATGGA+GGG + chr8_3:9457236-9457255 None:intergenic 35.0%
CTTGGCTACATAAATTGGAA+TGG + chr8_3:9457240-9457259 None:intergenic 35.0%
GATCAAATGTGGAAACTGTA+AGG - chr8_3:9457383-9457402 Msa1275500:intron 35.0%
! TATTATTGAAGTACTCCCTC+CGG - chr8_3:9457553-9457572 Msa1275500:intron 35.0%
!!! ATAGCTTTTGAAATTCAGGG+AGG - chr8_3:9457943-9457962 Msa1275500:intron 35.0%
!!! TAGCTTTTGAAATTCAGGGA+GGG - chr8_3:9457944-9457963 Msa1275500:intron 35.0%
AGCATAACTGTAAAGCAAGA+TGG + chr8_3:9457977-9457996 None:intergenic 35.0%
! ATCCAAAAGATTGGTCCATT+AGG + chr8_3:9458198-9458217 None:intergenic 35.0%
ACGTCAAGAAATCTATTAGG+CGG + chr8_3:9458312-9458331 None:intergenic 35.0%
AACAGGAAATCCAAATCCAT+GGG + chr8_3:9458373-9458392 None:intergenic 35.0%
TAACAGGAAATCCAAATCCA+TGG + chr8_3:9458374-9458393 None:intergenic 35.0%
TTAAAGCTTGTGAAGATCAC+CGG - chr8_3:9458432-9458451 Msa1275500:intron 35.0%
TGTTCATTACTGAAATGTGC+AGG - chr8_3:9458521-9458540 Msa1275500:intron 35.0%
GATACAAGTGTAATCATACC+TGG - chr8_3:9458573-9458592 Msa1275500:intron 35.0%
!!! TGGGAGTGTTTCATTTTTTC+AGG + chr8_3:9458874-9458893 None:intergenic 35.0%
! GTTTTACACGGATTTCCAAT+GGG + chr8_3:9458893-9458912 None:intergenic 35.0%
! AGTTTTACACGGATTTCCAA+TGG + chr8_3:9458894-9458913 None:intergenic 35.0%
TGACTGAAATTGTTGTGCAT+GGG - chr8_3:9458955-9458974 Msa1275500:intron 35.0%
ATTACCAAAACGGAAACCAA+GGG + chr8_3:9459062-9459081 None:intergenic 35.0%
TATTACCAAAACGGAAACCA+AGG + chr8_3:9459063-9459082 None:intergenic 35.0%
GGACTGTGAACTTCTAATAA+TGG - chr8_3:9459240-9459259 Msa1275500:intron 35.0%
AAAGATAGATAAGGTAGGAG+GGG + chr8_3:9459277-9459296 None:intergenic 35.0%
GAAAGATAGATAAGGTAGGA+GGG + chr8_3:9459278-9459297 None:intergenic 35.0%
!! GTGAAAATGAGGCTAGTTTA+TGG + chr8_3:9459300-9459319 None:intergenic 35.0%
! TACACATTTTGGACTTCCAA+GGG - chr8_3:9459413-9459432 Msa1275500:intron 35.0%
!!! CCAGTAAAAAGTGTCCTTTT+GGG + chr8_3:9459539-9459558 None:intergenic 35.0%
!!! ACCAGTAAAAAGTGTCCTTT+TGG + chr8_3:9459540-9459559 None:intergenic 35.0%
TTTCATGTAAGTGAACCACA+AGG + chr8_3:9459826-9459845 None:intergenic 35.0%
AAGAATGGTGATAGGGAAAA+AGG + chr8_3:9460233-9460252 None:intergenic 35.0%
ACACAACACAGTTGAACCAA+TGG - chr8_3:9454162-9454181 Msa1275500:three_prime_UTR 40.0%
GATGATGAACAAGAGAAGTG+AGG + chr8_3:9454222-9454241 None:intergenic 40.0%
AGAGGAAAAGAGATGGAAGA+GGG + chr8_3:9454271-9454290 None:intergenic 40.0%
TGTGTTGCAGTTTCTTCCAA+TGG - chr8_3:9454384-9454403 Msa1275500:CDS 40.0%
GCAGTTTCTTCCAATGGAAT+TGG - chr8_3:9454390-9454409 Msa1275500:CDS 40.0%
ATTGGAACTGGAACTAGTGA+AGG - chr8_3:9454453-9454472 Msa1275500:CDS 40.0%
TTAGTCAAGCAGCTAACTCT+CGG + chr8_3:9454483-9454502 None:intergenic 40.0%
TCCTTCTTCTACTAAATGCC+CGG - chr8_3:9454503-9454522 Msa1275500:intron 40.0%
TCAGTGTCAGTGTTTCGTTT+AGG - chr8_3:9454702-9454721 Msa1275500:intron 40.0%
TGTTGTATGGGACAAAGTGT+TGG - chr8_3:9455088-9455107 Msa1275500:intron 40.0%
! GTTGTATGGGACAAAGTGTT+GGG - chr8_3:9455089-9455108 Msa1275500:intron 40.0%
TAGCATTAGAGAGAGAGTTG+GGG - chr8_3:9455136-9455155 Msa1275500:intron 40.0%
GGTAGCAAGTGTAGTTGAAA+TGG - chr8_3:9455157-9455176 Msa1275500:intron 40.0%
ATTACATGCTCAAACCACGT+AGG + chr8_3:9455194-9455213 None:intergenic 40.0%
! GACCTGTAGATTTTGCAGTA+AGG - chr8_3:9455219-9455238 Msa1275500:CDS 40.0%
CTCCTTACTGCAAAATCTAC+AGG + chr8_3:9455224-9455243 None:intergenic 40.0%
GAGAGTAGTCAAATCACTGA+AGG - chr8_3:9455241-9455260 Msa1275500:CDS 40.0%
! TTTGTGTCGGTGTTTGGTTT+AGG - chr8_3:9455408-9455427 Msa1275500:CDS 40.0%
TGTACAAAAGCTGCTAAACC+GGG - chr8_3:9455495-9455514 Msa1275500:intron 40.0%
CTAAACCGGGTGATAAGAAT+AGG - chr8_3:9455508-9455527 Msa1275500:intron 40.0%
AGTCTCCTATTCTTATCACC+CGG + chr8_3:9455516-9455535 None:intergenic 40.0%
AAACCAGAGAAAACCTAGTC+AGG - chr8_3:9455964-9455983 Msa1275500:intron 40.0%
! TATCCTGACTAGGTTTTCTC+TGG + chr8_3:9455970-9455989 None:intergenic 40.0%
GCAGAAAAAGAGAGAAAACC+AGG - chr8_3:9455949-9455968 Msa1275500:intron 40.0%
TCTCCCTGTTCTTGTATTTC+AGG - chr8_3:9456071-9456090 Msa1275500:intron 40.0%
! CAGTTAGTTTACTGCACAGT+TGG - chr8_3:9456156-9456175 Msa1275500:intron 40.0%
AGTTTACTGCACAGTTGGTT+AGG - chr8_3:9456161-9456180 Msa1275500:intron 40.0%
CCAAATTAAGCAAACACGTG+AGG + chr8_3:9456379-9456398 None:intergenic 40.0%
CCTCACGTGTTTGCTTAATT+TGG - chr8_3:9456376-9456395 Msa1275500:intron 40.0%
! TTTTCTATCACAGTGCTCTC+CGG - chr8_3:9456430-9456449 Msa1275500:intron 40.0%
GTTAGGAACTGCATGTAGAA+TGG - chr8_3:9456580-9456599 Msa1275500:intron 40.0%
! TATAAAGTTGTAGTGGGACC+AGG - chr8_3:9456691-9456710 Msa1275500:intron 40.0%
! ATAAAGTTGTAGTGGGACCA+GGG - chr8_3:9456692-9456711 Msa1275500:intron 40.0%
TCACAAGAGTTGTACATCAG+TGG - chr8_3:9456826-9456845 Msa1275500:intron 40.0%
TACATCAGTGGCATTTCTTG+TGG - chr8_3:9456838-9456857 Msa1275500:intron 40.0%
CGATCTACATCATAAGCTCT+AGG + chr8_3:9456901-9456920 None:intergenic 40.0%
CATTCTCATGCTGATGCAAT+TGG - chr8_3:9457036-9457055 Msa1275500:intron 40.0%
! TCTAAGATCATCAAGACCTG+GGG + chr8_3:9457192-9457211 None:intergenic 40.0%
!! CTCTAAGATCATCAAGACCT+GGG + chr8_3:9457193-9457212 None:intergenic 40.0%
!! TCTCTAAGATCATCAAGACC+TGG + chr8_3:9457194-9457213 None:intergenic 40.0%
! GTCTTGATGATCTTAGAGAC+TGG - chr8_3:9457195-9457214 Msa1275500:CDS 40.0%
GGCTACATAAATTGGAATGG+AGG + chr8_3:9457237-9457256 None:intergenic 40.0%
TCACGCTTGGCTACATAAAT+TGG + chr8_3:9457245-9457264 None:intergenic 40.0%
AATGGTGTTTATGCCTTCAC+TGG - chr8_3:9457503-9457522 Msa1275500:intron 40.0%
ATGGTGTTTATGCCTTCACT+GGG - chr8_3:9457504-9457523 Msa1275500:intron 40.0%
TTCTTGTAAATAGGACCGGA+GGG + chr8_3:9457571-9457590 None:intergenic 40.0%
TTTCTTGTAAATAGGACCGG+AGG + chr8_3:9457572-9457591 None:intergenic 40.0%
TTTCTTGTAAAAAGGACCGG+AGG - chr8_3:9457687-9457706 Msa1275500:intron 40.0%
TTCTTGTAAAAAGGACCGGA+GGG - chr8_3:9457688-9457707 Msa1275500:intron 40.0%
ATGTAAACACATACTCCCTC+CGG + chr8_3:9457706-9457725 None:intergenic 40.0%
AGGCAGATGCAGATATTAAC+TGG + chr8_3:9457749-9457768 None:intergenic 40.0%
! AATGAGGCTTTTCCACCTAA+TGG - chr8_3:9458180-9458199 Msa1275500:intron 40.0%
! CAAAAGATTGGTCCATTAGG+TGG + chr8_3:9458195-9458214 None:intergenic 40.0%
!! CACCTAATGGACCAATCTTT+TGG - chr8_3:9458193-9458212 Msa1275500:intron 40.0%
TTTGGATTTGTCTCTTCTCG+TGG - chr8_3:9458211-9458230 Msa1275500:intron 40.0%
TTGGATTTGTCTCTTCTCGT+GGG - chr8_3:9458212-9458231 Msa1275500:intron 40.0%
TGGGCTTAAATCCTAACGAT+TGG - chr8_3:9458231-9458250 Msa1275500:intron 40.0%
GAAGAAGTTCACCAATCGTT+AGG + chr8_3:9458245-9458264 None:intergenic 40.0%
CGTCAAGAAATCTATTAGGC+GGG + chr8_3:9458311-9458330 None:intergenic 40.0%
ATTTACTTTCCCTTGTCCCA+TGG - chr8_3:9458354-9458373 Msa1275500:intron 40.0%
AATCCAAATCCATGGGACAA+GGG + chr8_3:9458366-9458385 None:intergenic 40.0%
AAATCCAAATCCATGGGACA+AGG + chr8_3:9458367-9458386 None:intergenic 40.0%
TACTTTCAGGATAAAGCAGC+AGG + chr8_3:9458403-9458422 None:intergenic 40.0%
! TTTGTACACGGATTGAAGGT+CGG - chr8_3:9458645-9458664 Msa1275500:intron 40.0%
CTGACTGAAATTGTTGTGCA+TGG - chr8_3:9458954-9458973 Msa1275500:intron 40.0%
AGGTGATGTTTCTCACTAAG+TGG - chr8_3:9459094-9459113 Msa1275500:intron 40.0%
AGTTCACAGTCCTTCAAAAG+TGG + chr8_3:9459232-9459251 None:intergenic 40.0%
AAGATAGATAAGGTAGGAGG+GGG + chr8_3:9459276-9459295 None:intergenic 40.0%
GGAAAGATAGATAAGGTAGG+AGG + chr8_3:9459279-9459298 None:intergenic 40.0%
! ACTTTTGACAGGATGCTTTG+AGG - chr8_3:9459373-9459392 Msa1275500:intron 40.0%
! CTACACATTTTGGACTTCCA+AGG - chr8_3:9459412-9459431 Msa1275500:intron 40.0%
AGGAAGATCAGAATTACCCT+TGG + chr8_3:9459432-9459451 None:intergenic 40.0%
!! CCCAAAAGGACACTTTTTAC+TGG - chr8_3:9459536-9459555 Msa1275500:intron 40.0%
GAAGGAAGATTATGCTGACA+TGG + chr8_3:9459580-9459599 None:intergenic 40.0%
AAATCAAGGCATGAAGCTGA+AGG + chr8_3:9459598-9459617 None:intergenic 40.0%
CAGTCACTATTATACACACC+TGG - chr8_3:9459718-9459737 Msa1275500:intron 40.0%
TCAGATGCATCATACCTTCA+AGG + chr8_3:9459961-9459980 None:intergenic 40.0%
! TGAAGGTATGATGCATCTGA+TGG - chr8_3:9459961-9459980 Msa1275500:CDS 40.0%
CAACACAGTTGAACCAATGG+TGG - chr8_3:9454165-9454184 Msa1275500:three_prime_UTR 45.0%
AGAAGGAAGAAGACGAATGG+AGG + chr8_3:9454197-9454216 None:intergenic 45.0%
GGAAGAAGGAAGAAGACGAA+TGG + chr8_3:9454200-9454219 None:intergenic 45.0%
ACAAGAGAAGTGAGGGAAGA+AGG + chr8_3:9454214-9454233 None:intergenic 45.0%
AGATGGAAGAGGGACGTAAA+CGG + chr8_3:9454261-9454280 None:intergenic 45.0%
GAGAGGAAAAGAGATGGAAG+AGG + chr8_3:9454272-9454291 None:intergenic 45.0%
AGTTAGAGAGAGAGAGAGAG+AGG + chr8_3:9454315-9454334 None:intergenic 45.0%
ACCGGGCATTTAGTAGAAGA+AGG + chr8_3:9454507-9454526 None:intergenic 45.0%
AGTCAAATCACTGAAGGCAG+AGG - chr8_3:9455247-9455266 Msa1275500:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr8_3:9455351-9455370 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr8_3:9455352-9455371 None:intergenic 45.0%
! TTGGTGTTTGTGTCGGTGTT+TGG - chr8_3:9455402-9455421 Msa1275500:CDS 45.0%
GATAGCAATTGTGGTCTTCC+TGG - chr8_3:9455794-9455813 Msa1275500:intron 45.0%
TGCACAGTTGGTTAGGAGTT+AGG - chr8_3:9456168-9456187 Msa1275500:intron 45.0%
!! TAACAGACAGGTGCTGTTTC+AGG + chr8_3:9456201-9456220 None:intergenic 45.0%
TCAATTCAAGGCCAGTTTCG+AGG - chr8_3:9456333-9456352 Msa1275500:intron 45.0%
ATATCTCGCGTTGTTTGTGC+AGG + chr8_3:9456643-9456662 None:intergenic 45.0%
ATACACTATGGACAACACCC+TGG + chr8_3:9456712-9456731 None:intergenic 45.0%
GATGTAGATCGCATTCTTGC+TGG - chr8_3:9456910-9456929 Msa1275500:intron 45.0%
TCTCATGCTGATGCAATTGG+AGG - chr8_3:9457039-9457058 Msa1275500:intron 45.0%
TATCAGCTCTGTACCTTCCT+CGG + chr8_3:9457535-9457554 None:intergenic 45.0%
GGGTTGTAAGCGTCTACTAT+AGG + chr8_3:9458267-9458286 None:intergenic 45.0%
ACGCTTACAACCCTTTCAGT+AGG - chr8_3:9458274-9458293 Msa1275500:intron 45.0%
CGCTTACAACCCTTTCAGTA+GGG - chr8_3:9458275-9458294 Msa1275500:intron 45.0%
GCTTACAACCCTTTCAGTAG+GGG - chr8_3:9458276-9458295 Msa1275500:intron 45.0%
TTTCCCTTGTCCCATGGATT+TGG - chr8_3:9458360-9458379 Msa1275500:intron 45.0%
!! AAGCAGCAGGTGCTATTAAC+AGG + chr8_3:9458390-9458409 None:intergenic 45.0%
! TGTAATCATACCTGGTGCTG+CGG - chr8_3:9458581-9458600 Msa1275500:intron 45.0%
GAAATTGTTGTGCATGGGCT+TGG - chr8_3:9458960-9458979 Msa1275500:intron 45.0%
AGTTTACTCCACTACCAGTG+TGG - chr8_3:9459017-9459036 Msa1275500:intron 45.0%
TGTGGCATGGTCAAGGTTAT+CGG - chr8_3:9459035-9459054 Msa1275500:intron 45.0%
ATGTGTAGCTGAAGAGCGAT+CGG + chr8_3:9459400-9459419 None:intergenic 45.0%
! CGCTCTTCAGCTACACATTT+TGG - chr8_3:9459402-9459421 Msa1275500:intron 45.0%
!! TCATCCTTTTCAGGCCTTAG+AGG - chr8_3:9459496-9459515 Msa1275500:intron 45.0%
!! ACTTCCTCTAAGGCCTGAAA+AGG + chr8_3:9459503-9459522 None:intergenic 45.0%
TGCAACTGGCTGCAGTATAA+AGG + chr8_3:9459850-9459869 None:intergenic 45.0%
TAAAGGTTCGGAACTGCAAC+TGG + chr8_3:9459864-9459883 None:intergenic 45.0%
ATGCGCAACTGAGCTATGAT+GGG - chr8_3:9460038-9460057 Msa1275500:CDS 45.0%
GAAAAAGGCAGAATAGCTGC+AGG + chr8_3:9460218-9460237 None:intergenic 45.0%
ATGGAGGAGGTAACCACCAT+TGG + chr8_3:9454181-9454200 None:intergenic 50.0%
AGGAAGAAGACGAATGGAGG+AGG + chr8_3:9454194-9454213 None:intergenic 50.0%
GGACGTAAACGGCGTGAATA+GGG + chr8_3:9454250-9454269 None:intergenic 50.0%
GGGAGAGAGAGGAAAAGAGA+TGG + chr8_3:9454278-9454297 None:intergenic 50.0%
GAGAGGTTACGAGAGTGGAT+GGG + chr8_3:9454298-9454317 None:intergenic 50.0%
AGAGAGGTTACGAGAGTGGA+TGG + chr8_3:9454299-9454318 None:intergenic 50.0%
AGAGAGAGAGGTTACGAGAG+TGG + chr8_3:9454303-9454322 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr8_3:9455347-9455366 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr8_3:9455353-9455372 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr8_3:9455350-9455369 Msa1275500:intron 50.0%
TCCGGTGGTTTCCCGAATTT+GGG - chr8_3:9456448-9456467 Msa1275500:intron 50.0%
ACCCAAATTCGGGAAACCAC+CGG + chr8_3:9456452-9456471 None:intergenic 50.0%
TGTAGCCAAGCGTGACTTTG+AGG - chr8_3:9457250-9457269 Msa1275500:intron 50.0%
AGAAGGAAAGAGCAGCGAAG+AGG + chr8_3:9457277-9457296 None:intergenic 50.0%
ATCAGCTCTGTACCTTCCTC+GGG + chr8_3:9457534-9457553 None:intergenic 50.0%
TACAACCCTTTCAGTAGGGG+TGG - chr8_3:9458279-9458298 Msa1275500:intron 50.0%
TGTCACCACCCCTACTGAAA+GGG + chr8_3:9458287-9458306 None:intergenic 50.0%
ATGTCACCACCCCTACTGAA+AGG + chr8_3:9458288-9458307 None:intergenic 50.0%
TAACCTTGACCATGCCACAC+TGG + chr8_3:9459034-9459053 None:intergenic 50.0%
TGTGTAGCTGAAGAGCGATC+GGG + chr8_3:9459399-9459418 None:intergenic 50.0%
TACACACCTGGTATCGTCTG+CGG - chr8_3:9459730-9459749 Msa1275500:intron 50.0%
GACTGCGATTGATGCAGCAT+CGG + chr8_3:9459802-9459821 None:intergenic 50.0%
CATCAATCGCAGTCACCTTG+TGG - chr8_3:9459808-9459827 Msa1275500:intron 50.0%
TCTCGTTGTTGGCACCTTGA+AGG - chr8_3:9459944-9459963 Msa1275500:CDS 50.0%
CATAGCTCAGTTGCGCATCA+AGG + chr8_3:9460036-9460055 None:intergenic 50.0%
GATGCGCAACTGAGCTATGA+TGG - chr8_3:9460037-9460056 Msa1275500:CDS 50.0%
GGGACGTAAACGGCGTGAAT+AGG + chr8_3:9454251-9454270 None:intergenic 55.0%
TGGTACAAACCAGGCCTACG+TGG - chr8_3:9455177-9455196 Msa1275500:intron 55.0%
ATGCTCAAACCACGTAGGCC+TGG + chr8_3:9455189-9455208 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+CGG + chr8_3:9455339-9455358 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr8_3:9455339-9455358 Msa1275500:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr8_3:9455345-9455364 Msa1275500:intron 55.0%
CAGGGAGAACTCACTTTCCC+TGG + chr8_3:9456059-9456078 None:intergenic 55.0%
TCTATCACAGTGCTCTCCGG+TGG - chr8_3:9456433-9456452 Msa1275500:intron 55.0%
CTCCGGTGGTTTCCCGAATT+TGG - chr8_3:9456447-9456466 Msa1275500:intron 55.0%
CATGCTTCTCTCTTCTCCCC+AGG - chr8_3:9457173-9457192 Msa1275500:intron 55.0%
GAGGACCTCAAAGTCACGCT+TGG + chr8_3:9457258-9457277 None:intergenic 55.0%
TCCTCGGGTAATCCCAGTGA+AGG + chr8_3:9457519-9457538 None:intergenic 55.0%
TCACTGGGATTACCCGAGGA+AGG - chr8_3:9457519-9457538 Msa1275500:intron 55.0%
ACTCCACTACCAGTGTGGCA+TGG - chr8_3:9459022-9459041 Msa1275500:intron 55.0%
TGACCATGCCACACTGGTAG+TGG + chr8_3:9459028-9459047 None:intergenic 55.0%
CTACCAGTGTGGCATGGTCA+AGG - chr8_3:9459028-9459047 Msa1275500:intron 55.0%
GGTCAAGGTTATCGGTCCCT+TGG - chr8_3:9459043-9459062 Msa1275500:intron 55.0%
! CGGTCCCTTGGTTTCCGTTT+TGG - chr8_3:9459055-9459074 Msa1275500:intron 55.0%
AGATAAGGTAGGAGGGGGAG+CGG + chr8_3:9459271-9459290 None:intergenic 55.0%
CGAGAGTGGATGGGAGAGAG+AGG + chr8_3:9454289-9454308 None:intergenic 60.0%
GTGTAGCCGACCCCACTTAG+TGG - chr8_3:9455338-9455357 Msa1275500:intron 60.0%
ATTCGCCACGCGAATGCCAC+AGG - chr8_3:9455552-9455571 Msa1275500:intron 60.0%
GTGTTCCTGTGGCATTCGCG+TGG + chr8_3:9455560-9455579 None:intergenic 60.0%
GCCTTCACTGGGATTACCCG+AGG - chr8_3:9457515-9457534 Msa1275500:intron 60.0%
AATGCTGAGACCGCAGCACC+AGG + chr8_3:9458594-9458613 None:intergenic 60.0%
ACGCGACCGCAGACGATACC+AGG + chr8_3:9459739-9459758 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 9454106 9460352 9454106 ID=Msa1275500;Name=Msa1275500
chr8_3 mRNA 9454106 9460352 9454106 ID=Msa1275500-mRNA-1;Parent=Msa1275500;Name=Msa1275500-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|1|0.91|1|0.81|0.91|12|268|366
chr8_3 exon 9454106 9454492 9454106 ID=Msa1275500-mRNA-1:exon:3995;Parent=Msa1275500-mRNA-1
chr8_3 exon 9454901 9454949 9454901 ID=Msa1275500-mRNA-1:exon:3994;Parent=Msa1275500-mRNA-1
chr8_3 exon 9455024 9455074 9455024 ID=Msa1275500-mRNA-1:exon:3993;Parent=Msa1275500-mRNA-1
chr8_3 exon 9455197 9455260 9455197 ID=Msa1275500-mRNA-1:exon:3992;Parent=Msa1275500-mRNA-1
chr8_3 exon 9455363 9455439 9455363 ID=Msa1275500-mRNA-1:exon:3991;Parent=Msa1275500-mRNA-1
chr8_3 exon 9455796 9455915 9455796 ID=Msa1275500-mRNA-1:exon:3990;Parent=Msa1275500-mRNA-1
chr8_3 exon 9457187 9457263 9457187 ID=Msa1275500-mRNA-1:exon:3989;Parent=Msa1275500-mRNA-1
chr8_3 exon 9457398 9457453 9457398 ID=Msa1275500-mRNA-1:exon:3988;Parent=Msa1275500-mRNA-1
chr8_3 exon 9457989 9458030 9457989 ID=Msa1275500-mRNA-1:exon:3987;Parent=Msa1275500-mRNA-1
chr8_3 exon 9458854 9458966 9458854 ID=Msa1275500-mRNA-1:exon:3986;Parent=Msa1275500-mRNA-1
chr8_3 exon 9459934 9460064 9459934 ID=Msa1275500-mRNA-1:exon:3985;Parent=Msa1275500-mRNA-1
chr8_3 exon 9460151 9460352 9460151 ID=Msa1275500-mRNA-1:exon:3984;Parent=Msa1275500-mRNA-1
chr8_3 CDS 9460151 9460352 9460151 ID=Msa1275500-mRNA-1:cds;Parent=Msa1275500-mRNA-1
chr8_3 CDS 9459934 9460064 9459934 ID=Msa1275500-mRNA-1:cds;Parent=Msa1275500-mRNA-1
chr8_3 CDS 9458854 9458966 9458854 ID=Msa1275500-mRNA-1:cds;Parent=Msa1275500-mRNA-1
chr8_3 CDS 9457989 9458030 9457989 ID=Msa1275500-mRNA-1:cds;Parent=Msa1275500-mRNA-1
chr8_3 CDS 9457398 9457453 9457398 ID=Msa1275500-mRNA-1:cds;Parent=Msa1275500-mRNA-1
chr8_3 CDS 9457187 9457263 9457187 ID=Msa1275500-mRNA-1:cds;Parent=Msa1275500-mRNA-1
chr8_3 CDS 9455796 9455915 9455796 ID=Msa1275500-mRNA-1:cds;Parent=Msa1275500-mRNA-1
chr8_3 CDS 9455363 9455439 9455363 ID=Msa1275500-mRNA-1:cds;Parent=Msa1275500-mRNA-1
chr8_3 CDS 9455197 9455260 9455197 ID=Msa1275500-mRNA-1:cds;Parent=Msa1275500-mRNA-1
chr8_3 CDS 9455024 9455074 9455024 ID=Msa1275500-mRNA-1:cds;Parent=Msa1275500-mRNA-1
chr8_3 CDS 9454901 9454949 9454901 ID=Msa1275500-mRNA-1:cds;Parent=Msa1275500-mRNA-1
chr8_3 CDS 9454374 9454492 9454374 ID=Msa1275500-mRNA-1:cds;Parent=Msa1275500-mRNA-1
chr8_3 three_prime_UTR 9454106 9454373 9454106 ID=Msa1275500-mRNA-1:three_prime_utr;Parent=Msa1275500-mRNA-1
Gene Sequence

>Msa1275500

AGATTTTCAATTGGAGCTGTAATAATTTTGGTGATTTGTGTGTTGTGTAACTGTAGACACAACACAGTTGAACCAATGGTGGTTACCTCCTCCATTCGTCTTCTTCCTTCTTCCCTCACTTCTCTTGTTCATCATCGCTCTCCCTATTCACGCCGTTTACGTCCCTCTTCCATCTCTTTTCCTCTCTCTCCCATCCACTCTCTTTCTTCCAATGGAATTGGTGATGTTGAATTACCCGTTGATCAGTCACAAGTTATATTCATTGGAACTGGAACTAGTGAAGGAATTCCGAGAGTTAGCTGCTTGACTAATCCTTCTTCTACTAAATGCCCGGTTTGTACAAAAGCTGCTAAACCGGGTGATAAGAATAGGAGACTTAACACAAGCATACTCATTCGCCACGCGAATGCCACAGGAACACACAATATTCTTATAGATGCTGGAAAATTTTTCTATCACAGTGCTCTCCGGTGGTTTCCCGAATTTGGGATAAGAACACTTGATGCAGTTATTATTACTCATTCTCATGCTGATGCAATTGGAGGTCTTGATGATCTTAGAGACTGGACTAACAATGTTCAGCCCTCCATTCCAATTTATGTAGCCAAGCGTGACTTTGAGGTGATGAAGAAGACCCATTATTATTTAGTTGATACAAGTGTAATCATACCTGGTGCTGCGGTCTCAGCATTGCAATTCAATAGCATATCTGAAGAACCTTTTTTTGTACACGGATTGAAGTTTACTCCACTACCAGTGTGGCATGGTCAAGGTTATCGGTCCCTTGGTTTCCGTTTTGGTAATATATGTTACATAAGTGATGTCAGTGAAATTCCTGAAGAAACTTATCCACTTTTGAAGGACTGTGAACTTCTAATAATGGATGCTTTGAGGCCCGATCGCTCTTCAGCTACACATTTTGGACTTCCAAGGGCCTTAGAGGAAGTGAGAAAAATTCAACCCAAAAGGACACTTTTTACTGGTATGATGCATCTGATGGATCATGAAGAAGTGAATGACTACCTTACAAAATTATTGGAGTCTGAGGGCCTTGATGCGCAACTGAGCTATGATGGGCTTTGTATAGCAGTCAGACTCTAA

Protein sequence

>Msa1275500

RFSIGAVIILVICVLCNCRHNTVEPMVVTSSIRLLPSSLTSLVHHRSPYSRRLRPSSISFPLSPIHSLSSNGIGDVELPVDQSQVIFIGTGTSEGIPRVSCLTNPSSTKCPVCTKAAKPGDKNRRLNTSILIRHANATGTHNILIDAGKFFYHSALRWFPEFGIRTLDAVIITHSHADAIGGLDDLRDWTNNVQPSIPIYVAKRDFEVMKKTHYYLVDTSVIIPGAAVSALQFNSISEEPFFVHGLKFTPLPVWHGQGYRSLGFRFGNICYISDVSEIPEETYPLLKDCELLIMDALRPDRSSATHFGLPRALEEVRKIQPKRTLFTGMMHLMDHEEVNDYLTKLLESEGLDAQLSYDGLCIAVRL*