AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0366600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0366600 MtrunA17_Chr3g0107541 82.500 80 14 0 1 80 258 337 2.01e-40 138
Msa0366600 MtrunA17_Chr3g0105751 77.612 67 15 0 1 67 255 321 1.84e-32 115
Msa0366600 MtrunA17_Chr3g0107561 85.484 62 9 0 3 64 255 316 2.75e-30 108
Msa0366600 MtrunA17_Chr3g0107611 53.165 79 35 1 4 80 264 342 2.87e-22 88.6
Msa0366600 MtrunA17_Chr8g0370651 51.250 80 39 0 1 80 255 334 5.72e-22 87.8
Msa0366600 MtrunA17_Chr8g0370641 50.633 79 39 0 1 79 251 329 2.22e-21 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0366600 AT5G35917.1 46.250 80 43 0 1 80 259 338 2.48e-20 83.6
Msa0366600 AT5G05260.2 46.250 80 43 0 1 80 255 334 3.79e-20 82.8
Msa0366600 AT4G39950.1 43.750 80 45 0 1 80 265 344 3.30e-19 80.5
Msa0366600 AT4G39950.2 43.750 80 45 0 1 80 305 384 4.82e-19 79.7
Msa0366600 AT2G22330.1 42.500 80 46 0 1 80 267 346 3.36e-18 77.4
Msa0366600 AT2G22330.2 42.500 80 46 0 1 80 290 369 3.37e-18 77.4
Msa0366600 AT1G16400.1 42.308 78 44 1 3 79 258 335 9.67e-15 67.8
Msa0366600 AT1G16410.1 41.026 78 45 1 3 79 259 336 2.15e-14 66.6
Msa0366600 AT1G16410.2 41.026 78 45 1 3 79 259 336 3.20e-14 66.2
Msa0366600 AT1G58260.1 43.243 74 41 1 7 79 254 327 1.86e-11 58.2

Find 125 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGATTCTCTCTTCAATT+AGG 0.154033 3_1:-61508966 None:intergenic
CTTCTTGAACACACTTAATA+TGG 0.179144 3_1:+61510249 Msa0366600:three_prime_UTR
AAGATTGATTCTTGATATAT+TGG 0.187745 3_1:-61509968 None:intergenic
TCCAATTCTTCTGTGGCTTT+TGG 0.209981 3_1:-61509532 None:intergenic
GGTTTGTTTGCAAGCATTTC+AGG 0.232153 3_1:-61508325 None:intergenic
CTCAGTAATGTAGCATCTTA+TGG 0.249041 3_1:-61508242 None:intergenic
ATCAATGGCTTCAAGATAAA+AGG 0.254882 3_1:+61508620 Msa0366600:five_prime_UTR
GGTTACCATCCCAGTCCTTT+TGG 0.266372 3_1:+61508194 Msa0366600:five_prime_UTR
GTTTAGGAATATCTGATTCT+TGG 0.271659 3_1:-61509582 None:intergenic
TAGGGTTCAGTCCAAACTTT+TGG 0.273056 3_1:-61509763 None:intergenic
ATTTCACTAGCTAGGCTTAT+TGG 0.278371 3_1:-61508496 None:intergenic
TTTGATTCTCTCTTCAATTA+GGG 0.281399 3_1:-61508965 None:intergenic
GCAATGGAGGGACAAGTAAC+AGG 0.334653 3_1:-61508430 None:intergenic
TCCAAAAGCCACAGAAGAAT+TGG 0.337259 3_1:+61509531 Msa0366600:three_prime_UTR
TTGGGAGAAATCCAAAAGTT+TGG 0.343161 3_1:+61509752 Msa0366600:three_prime_UTR
GGCTTTGCTGCAACCGTTAG+TGG 0.354038 3_1:-61510024 None:intergenic
TCCTAAACTAAACTTCTTGA+TGG 0.355919 3_1:+61509597 Msa0366600:three_prime_UTR
AAGGATATGAACTTCAATTC+TGG 0.360150 3_1:-61509844 None:intergenic
AGATTGATTCTTGATATATT+GGG 0.365747 3_1:-61509967 None:intergenic
GGGAACATTGAAAGCCGTTA+TGG 0.376372 3_1:-61509650 None:intergenic
AAGACTAACAGATCAAAATA+AGG 0.376987 3_1:-61510334 None:intergenic
GCCATCAAGAAGTTTAGTTT+AGG 0.379093 3_1:-61509598 None:intergenic
GACTTAGATGCATGGTCATA+AGG 0.379157 3_1:+61508897 Msa0366600:exon
GAAGAATTGGACAATATTGT+TGG 0.396293 3_1:+61509544 Msa0366600:three_prime_UTR
GAACGTCATCTTAAGAATGA+TGG 0.410186 3_1:+61509799 Msa0366600:three_prime_UTR
TCATTCTTAAGATGACGTTC+TGG 0.411841 3_1:-61509796 None:intergenic
CAATCCATCCAATGCTTGAA+TGG 0.413052 3_1:+61509473 Msa0366600:exon
ATCAAGAGATATAACACCTT+TGG 0.413052 3_1:-61509998 None:intergenic
ACGTTCTGGTTTGAATTTGT+AGG 0.416029 3_1:-61509782 None:intergenic
ATATCCTTCATTGTTAATAA+CGG 0.418798 3_1:-61509066 None:intergenic
CGTTCTGGTTTGAATTTGTA+GGG 0.423343 3_1:-61509781 None:intergenic
ACCAACTATAGGCAATGGTT+TGG 0.432042 3_1:-61508296 None:intergenic
CCAACTATAGGCAATGGTTT+GGG 0.432686 3_1:-61508295 None:intergenic
TCTACGAATGATACAATGAT+TGG 0.434175 3_1:+61509679 Msa0366600:three_prime_UTR
TCAGGAAGATTACCAACTAT+AGG 0.436534 3_1:-61508307 None:intergenic
CACATAAAACATAAGATTGT+CGG 0.438363 3_1:-61508653 None:intergenic
GGTTACTCCATGGCTTCACT+TGG 0.446859 3_1:+61509935 Msa0366600:three_prime_UTR
ATAGGCAATGGTTTGGGACC+AGG 0.446943 3_1:-61508289 None:intergenic
TCAAACAAATATAATAATCA+AGG 0.447950 3_1:-61508129 None:intergenic
TTGTGTATCCACCTAGCTGC+AGG 0.449285 3_1:-61508346 None:intergenic
TCTCTCCACACAGGCATCAA+TGG 0.449375 3_1:+61508605 Msa0366600:five_prime_UTR
AACTTGCTAAGGAAGGCTAT+TGG 0.455102 3_1:-61510168 None:intergenic
GGAACATTGAAAGCCGTTAT+GGG 0.462498 3_1:-61509649 None:intergenic
CTGATTATATCCCATGTTTG+AGG 0.467744 3_1:+61508868 Msa0366600:five_prime_UTR
TCTCAAGAATTCACGGGCAA+TGG 0.468248 3_1:-61508446 None:intergenic
GCTAGTGAAATCATCTCAAA+TGG 0.469957 3_1:+61508508 Msa0366600:five_prime_UTR
TGCTTGGAAGAAGTGGTCTT+GGG 0.478573 3_1:+61509734 Msa0366600:three_prime_UTR
GCTAATGTCCATTCAAGCAT+TGG 0.481478 3_1:-61509481 None:intergenic
TTGCTTGGAAGAAGTGGTCT+TGG 0.484460 3_1:+61509733 Msa0366600:three_prime_UTR
AGAATCAAACAATGGAATGA+TGG 0.485607 3_1:+61508979 Msa0366600:CDS
ACTTAGATGCATGGTCATAA+GGG 0.485663 3_1:+61508898 Msa0366600:exon
CCCAAACCATTGCCTATAGT+TGG 0.486285 3_1:+61508295 Msa0366600:five_prime_UTR
GGAAATTACTTGATACCAAA+GGG 0.486694 3_1:+61509700 Msa0366600:three_prime_UTR
ACAGGAAGGCGTGGTTGTCC+TGG 0.486752 3_1:+61509871 Msa0366600:three_prime_UTR
ACCTCAATTCTTGTACCCTA+TGG 0.492138 3_1:+61508538 Msa0366600:five_prime_UTR
GGTTGTCCTGGTATCATGCT+TGG 0.499438 3_1:+61509883 Msa0366600:three_prime_UTR
TTTGGAAAATGTATGAAGGA+TGG 0.507223 3_1:+61508775 Msa0366600:five_prime_UTR
ATTAACAATGAAGGATATCA+AGG 0.510284 3_1:+61509071 Msa0366600:CDS
TTGAGATGATTTCACTAGCT+AGG 0.511912 3_1:-61508504 None:intergenic
ATTACACTACTAGTTTCCTC+TGG 0.515110 3_1:+61508173 Msa0366600:five_prime_UTR
TGAAAGCCGTTATGGGATGC+AGG 0.515734 3_1:-61509642 None:intergenic
ACCACGCCTTCCTGTACTAA+AGG 0.516440 3_1:-61509863 None:intergenic
ATGGTGGCCTTGTCAATGTA+AGG 0.517075 3_1:+61508692 Msa0366600:five_prime_UTR
TTTCTGCCTGCATCCCATAA+CGG 0.518601 3_1:+61509636 Msa0366600:three_prime_UTR
AATATTGTCCAATTCTTCTG+TGG 0.519661 3_1:-61509539 None:intergenic
AGCAATACATGACTACCCTT+TGG 0.519982 3_1:-61509715 None:intergenic
AAGGGTAGTCATGTATTGCT+TGG 0.520514 3_1:+61509718 Msa0366600:three_prime_UTR
CAAGAATTCACGGGCAATGG+AGG 0.521971 3_1:-61508443 None:intergenic
TTCAATTCTGCTGCTAATCG+TGG 0.524688 3_1:-61510097 None:intergenic
TAATCCGTTATTAACAATGA+AGG 0.525844 3_1:+61509062 Msa0366600:CDS
AAGTTCATATCCTTTAGTAC+AGG 0.529485 3_1:+61509853 Msa0366600:three_prime_UTR
GAAATAGCGCGTATCCGCCT+AGG 0.530309 3_1:+61508391 Msa0366600:five_prime_UTR
TACAATTCTGCTGCTAATCG+TGG 0.533354 3_1:-61510045 None:intergenic
TAGGCAATGGTTTGGGACCA+GGG 0.535787 3_1:-61508288 None:intergenic
AGTCAAGTAACCTCAAACAT+GGG 0.536224 3_1:-61508878 None:intergenic
AGAAAGAAACTTGCTAAGGA+AGG 0.536522 3_1:-61510175 None:intergenic
ATGTCCATTCAAGCATTGGA+TGG 0.540149 3_1:-61509477 None:intergenic
GGATAACATGGACATTTCCT+AGG 0.543053 3_1:-61508408 None:intergenic
TGGAAATTACTTGATACCAA+AGG 0.547170 3_1:+61509699 Msa0366600:three_prime_UTR
AACGTCATCTTAAGAATGAT+GGG 0.550072 3_1:+61509800 Msa0366600:three_prime_UTR
CATGTATTGCTTGGAAGAAG+TGG 0.552729 3_1:+61509727 Msa0366600:three_prime_UTR
ATCTCTTGATGAGCCACTAA+CGG 0.553205 3_1:+61510011 Msa0366600:three_prime_UTR
TTCTATGTAGGAATTGATGA+TGG 0.554104 3_1:+61509440 Msa0366600:intron
TGACTATAATGCTATTAGCT+AGG 0.558207 3_1:+61509914 Msa0366600:three_prime_UTR
AAGTCAAGTAACCTCAAACA+TGG 0.559690 3_1:-61508879 None:intergenic
TATTGTTGGAAAAGATAGAC+TGG 0.561753 3_1:+61509558 Msa0366600:three_prime_UTR
TAGGTGGATACACAAGACTA+TGG 0.562046 3_1:+61508354 Msa0366600:five_prime_UTR
GTGCACTCCAAGTGAAGCCA+TGG 0.562249 3_1:-61509942 None:intergenic
TGTATCATTCGTAGAGACAT+GGG 0.564941 3_1:-61509671 None:intergenic
GACAAGTAACAGGGATAACA+TGG 0.567850 3_1:-61508420 None:intergenic
GTACTTTGGAAAATGTATGA+AGG 0.575398 3_1:+61508771 Msa0366600:five_prime_UTR
ATTGCTACTCAACATTATTG+TGG 0.576812 3_1:+61508715 Msa0366600:five_prime_UTR
CTATTAGCTAGGTTACTCCA+TGG 0.577297 3_1:+61509925 Msa0366600:three_prime_UTR
GCCATAGGGTACAAGAATTG+AGG 0.578397 3_1:-61508539 None:intergenic
AGATTACCAACTATAGGCAA+TGG 0.578490 3_1:-61508301 None:intergenic
CAATGGAGGGACAAGTAACA+GGG 0.579220 3_1:-61508429 None:intergenic
TCAAAGAAAGAAACTTGCTA+AGG 0.586127 3_1:-61510179 None:intergenic
TCCTTTAGTACAGGAAGGCG+TGG 0.586631 3_1:+61509862 Msa0366600:three_prime_UTR
AAGAATTCACGGGCAATGGA+GGG 0.587985 3_1:-61508442 None:intergenic
AGGCAATGGTTTGGGACCAG+GGG 0.589217 3_1:-61508287 None:intergenic
TTGTATCATTCGTAGAGACA+TGG 0.592919 3_1:-61509672 None:intergenic
TTGCAAACAAACCTGCAGCT+AGG 0.602841 3_1:+61508335 Msa0366600:five_prime_UTR
TGGATCAAAGAATGTTGAAG+AGG 0.605991 3_1:+61508999 Msa0366600:CDS
TTGTACCCTATGGCGAACAA+TGG 0.607756 3_1:+61508548 Msa0366600:five_prime_UTR
TCATATCCTTTAGTACAGGA+AGG 0.608298 3_1:+61509857 Msa0366600:three_prime_UTR
TGTTTGAGAATGATTTGCGA+AGG 0.608803 3_1:+61508145 Msa0366600:five_prime_UTR
GTGGAGCCAAGCATGATACC+AGG 0.611313 3_1:-61509889 None:intergenic
ATTGGAAAACAGAATATACA+TGG 0.613034 3_1:-61510150 None:intergenic
GGAATTGATGATGGCAATGG+TGG 0.616942 3_1:+61509449 Msa0366600:intron
GGTTACTTGACTTAGATGCA+TGG 0.624272 3_1:+61508889 Msa0366600:exon
TAATAGCATTATAGTCATTG+TGG 0.627153 3_1:-61509908 None:intergenic
TTGAAGAGAGAATCAAACAA+TGG 0.627532 3_1:+61508971 Msa0366600:CDS
AAAAGCCAAAAGGACTGGGA+TGG 0.631073 3_1:-61508199 None:intergenic
CAAACAAACCTGCAGCTAGG+TGG 0.631866 3_1:+61508338 Msa0366600:five_prime_UTR
GTGTACAACAAATGTAACAA+TGG 0.640902 3_1:+61508673 Msa0366600:five_prime_UTR
GGCAATGGTTTGGGACCAGG+GGG 0.644821 3_1:-61508286 None:intergenic
GATGCATGGTCATAAGGGCA+AGG 0.647047 3_1:+61508903 Msa0366600:exon
AAGAATTGTTCTCTCCACAC+AGG 0.650085 3_1:+61508596 Msa0366600:five_prime_UTR
TAGCAATCCTTACATTGACA+AGG 0.660229 3_1:-61508699 None:intergenic
GTAGGAATTGATGATGGCAA+TGG 0.672523 3_1:+61509446 Msa0366600:intron
TGAAGCCATTGATGCCTGTG+TGG 0.690414 3_1:-61508610 None:intergenic
TACAACAAATGTAACAATGG+TGG 0.693075 3_1:+61508676 Msa0366600:five_prime_UTR
GTATCATTCGTAGAGACATG+GGG 0.704429 3_1:-61509670 None:intergenic
AGGACTGGGATGGTAACCAG+AGG 0.723034 3_1:-61508189 None:intergenic
TAACATGGACATTTCCTAGG+CGG 0.727704 3_1:-61508405 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAAAATTTGAATTTAA+TGG + chr3_1:61509196-61509215 Msa0366600:intron 10.0%
!! AGAATAAAATTTGAATTTAA+TGG + chr3_1:61509196-61509215 Msa0366600:intron 10.0%
!! TCAAACAAATATAATAATCA+AGG - chr3_1:61508132-61508151 None:intergenic 15.0%
!! TCAAACAAATATAATAATCA+AGG - chr3_1:61508132-61508151 None:intergenic 15.0%
!!! AATCAAGGTTTAAGTTTTAA+AGG - chr3_1:61508117-61508136 None:intergenic 20.0%
!!! GAAAACTATTTTTCAATACA+AGG + chr3_1:61508749-61508768 Msa0366600:five_prime_UTR 20.0%
!! ATATCCTTCATTGTTAATAA+CGG - chr3_1:61509069-61509088 None:intergenic 20.0%
!!! AGATTGATTCTTGATATATT+GGG - chr3_1:61509970-61509989 None:intergenic 20.0%
!!! AAGATTGATTCTTGATATAT+TGG - chr3_1:61509971-61509990 None:intergenic 20.0%
!!! TCTTGATTTTCAATGAAAAT+AGG + chr3_1:61510371-61510390 Msa0366600:three_prime_UTR 20.0%
!!! AATCAAGGTTTAAGTTTTAA+AGG - chr3_1:61508117-61508136 None:intergenic 20.0%
!!! GAAAACTATTTTTCAATACA+AGG + chr3_1:61508749-61508768 Msa0366600:five_prime_UTR 20.0%
!! ATATCCTTCATTGTTAATAA+CGG - chr3_1:61509069-61509088 None:intergenic 20.0%
!!! AGATTGATTCTTGATATATT+GGG - chr3_1:61509970-61509989 None:intergenic 20.0%
!!! AAGATTGATTCTTGATATAT+TGG - chr3_1:61509971-61509990 None:intergenic 20.0%
!!! TCTTGATTTTCAATGAAAAT+AGG + chr3_1:61510371-61510390 Msa0366600:three_prime_UTR 20.0%
! CACATAAAACATAAGATTGT+CGG - chr3_1:61508656-61508675 None:intergenic 25.0%
!!! TTTTTCAATACAAGGTACTT+TGG + chr3_1:61508757-61508776 Msa0366600:five_prime_UTR 25.0%
! TTTGATTCTCTCTTCAATTA+GGG - chr3_1:61508968-61508987 None:intergenic 25.0%
! TAATCCGTTATTAACAATGA+AGG + chr3_1:61509062-61509081 Msa0366600:CDS 25.0%
! ATTAACAATGAAGGATATCA+AGG + chr3_1:61509071-61509090 Msa0366600:CDS 25.0%
! TTGTAGTACTTTAAACGAAA+GGG + chr3_1:61509307-61509326 Msa0366600:intron 25.0%
! TTGATCATACATATCAGAAT+TGG - chr3_1:61509377-61509396 None:intergenic 25.0%
! TAATAGCATTATAGTCATTG+TGG - chr3_1:61509911-61509930 None:intergenic 25.0%
! ATTGGAAAACAGAATATACA+TGG - chr3_1:61510153-61510172 None:intergenic 25.0%
!!! ATGGATTAGTTTTTAGAAGT+TGG + chr3_1:61510268-61510287 Msa0366600:three_prime_UTR 25.0%
!!! TGGATTAGTTTTTAGAAGTT+GGG + chr3_1:61510269-61510288 Msa0366600:three_prime_UTR 25.0%
! AAGACTAACAGATCAAAATA+AGG - chr3_1:61510337-61510356 None:intergenic 25.0%
! CACATAAAACATAAGATTGT+CGG - chr3_1:61508656-61508675 None:intergenic 25.0%
!!! TTTTTCAATACAAGGTACTT+TGG + chr3_1:61508757-61508776 Msa0366600:five_prime_UTR 25.0%
! TTTGATTCTCTCTTCAATTA+GGG - chr3_1:61508968-61508987 None:intergenic 25.0%
! TAATCCGTTATTAACAATGA+AGG + chr3_1:61509062-61509081 Msa0366600:CDS 25.0%
! ATTAACAATGAAGGATATCA+AGG + chr3_1:61509071-61509090 Msa0366600:CDS 25.0%
! TTGTAGTACTTTAAACGAAA+GGG + chr3_1:61509307-61509326 Msa0366600:intron 25.0%
! TTGATCATACATATCAGAAT+TGG - chr3_1:61509377-61509396 None:intergenic 25.0%
! TAATAGCATTATAGTCATTG+TGG - chr3_1:61509911-61509930 None:intergenic 25.0%
! ATTGGAAAACAGAATATACA+TGG - chr3_1:61510153-61510172 None:intergenic 25.0%
!!! ATGGATTAGTTTTTAGAAGT+TGG + chr3_1:61510268-61510287 Msa0366600:three_prime_UTR 25.0%
!!! TGGATTAGTTTTTAGAAGTT+GGG + chr3_1:61510269-61510288 Msa0366600:three_prime_UTR 25.0%
! AAGACTAACAGATCAAAATA+AGG - chr3_1:61510337-61510356 None:intergenic 25.0%
! ATGTTTTCTCAAGAATTCAC+GGG - chr3_1:61508455-61508474 None:intergenic 30.0%
! CATGTTTTCTCAAGAATTCA+CGG - chr3_1:61508456-61508475 None:intergenic 30.0%
ATCAATGGCTTCAAGATAAA+AGG + chr3_1:61508620-61508639 Msa0366600:five_prime_UTR 30.0%
GTGTACAACAAATGTAACAA+TGG + chr3_1:61508673-61508692 Msa0366600:five_prime_UTR 30.0%
TACAACAAATGTAACAATGG+TGG + chr3_1:61508676-61508695 Msa0366600:five_prime_UTR 30.0%
ATTGCTACTCAACATTATTG+TGG + chr3_1:61508715-61508734 Msa0366600:five_prime_UTR 30.0%
! GTACTTTGGAAAATGTATGA+AGG + chr3_1:61508771-61508790 Msa0366600:five_prime_UTR 30.0%
TTTGGAAAATGTATGAAGGA+TGG + chr3_1:61508775-61508794 Msa0366600:five_prime_UTR 30.0%
CAAGGTAAAAAATGCAATGA+GGG + chr3_1:61508921-61508940 Msa0366600:CDS 30.0%
GTTTGATTCTCTCTTCAATT+AGG - chr3_1:61508969-61508988 None:intergenic 30.0%
TTGAAGAGAGAATCAAACAA+TGG + chr3_1:61508971-61508990 Msa0366600:CDS 30.0%
AGAATCAAACAATGGAATGA+TGG + chr3_1:61508979-61508998 Msa0366600:CDS 30.0%
TCTTTATAATGTGTTAGCGT+TGG - chr3_1:61509141-61509160 None:intergenic 30.0%
TATGTGTGTGTATATATTGC+TGG - chr3_1:61509258-61509277 None:intergenic 30.0%
CTTGTAGTACTTTAAACGAA+AGG + chr3_1:61509306-61509325 Msa0366600:intron 30.0%
AGCACATTAAACTTCTATGT+AGG + chr3_1:61509428-61509447 Msa0366600:intron 30.0%
TTCTATGTAGGAATTGATGA+TGG + chr3_1:61509440-61509459 Msa0366600:intron 30.0%
AATATTGTCCAATTCTTCTG+TGG - chr3_1:61509542-61509561 None:intergenic 30.0%
GAAGAATTGGACAATATTGT+TGG + chr3_1:61509544-61509563 Msa0366600:three_prime_UTR 30.0%
TATTGTTGGAAAAGATAGAC+TGG + chr3_1:61509558-61509577 Msa0366600:three_prime_UTR 30.0%
GTTTAGGAATATCTGATTCT+TGG - chr3_1:61509585-61509604 None:intergenic 30.0%
TCCTAAACTAAACTTCTTGA+TGG + chr3_1:61509597-61509616 Msa0366600:three_prime_UTR 30.0%
TCTACGAATGATACAATGAT+TGG + chr3_1:61509679-61509698 Msa0366600:three_prime_UTR 30.0%
TGGAAATTACTTGATACCAA+AGG + chr3_1:61509699-61509718 Msa0366600:three_prime_UTR 30.0%
GGAAATTACTTGATACCAAA+GGG + chr3_1:61509700-61509719 Msa0366600:three_prime_UTR 30.0%
AACGTCATCTTAAGAATGAT+GGG + chr3_1:61509800-61509819 Msa0366600:three_prime_UTR 30.0%
AAGGATATGAACTTCAATTC+TGG - chr3_1:61509847-61509866 None:intergenic 30.0%
AAGTTCATATCCTTTAGTAC+AGG + chr3_1:61509853-61509872 Msa0366600:three_prime_UTR 30.0%
TGACTATAATGCTATTAGCT+AGG + chr3_1:61509914-61509933 Msa0366600:three_prime_UTR 30.0%
! ATCAATCTTTTCGATTCCAA+AGG + chr3_1:61509982-61510001 Msa0366600:three_prime_UTR 30.0%
ATCAAGAGATATAACACCTT+TGG - chr3_1:61510001-61510020 None:intergenic 30.0%
!! TCAAAGAAAGAAACTTGCTA+AGG - chr3_1:61510182-61510201 None:intergenic 30.0%
CTTCTTGAACACACTTAATA+TGG + chr3_1:61510249-61510268 Msa0366600:three_prime_UTR 30.0%
! ATGTTTTCTCAAGAATTCAC+GGG - chr3_1:61508455-61508474 None:intergenic 30.0%
! CATGTTTTCTCAAGAATTCA+CGG - chr3_1:61508456-61508475 None:intergenic 30.0%
ATCAATGGCTTCAAGATAAA+AGG + chr3_1:61508620-61508639 Msa0366600:five_prime_UTR 30.0%
GTGTACAACAAATGTAACAA+TGG + chr3_1:61508673-61508692 Msa0366600:five_prime_UTR 30.0%
TACAACAAATGTAACAATGG+TGG + chr3_1:61508676-61508695 Msa0366600:five_prime_UTR 30.0%
ATTGCTACTCAACATTATTG+TGG + chr3_1:61508715-61508734 Msa0366600:five_prime_UTR 30.0%
! GTACTTTGGAAAATGTATGA+AGG + chr3_1:61508771-61508790 Msa0366600:five_prime_UTR 30.0%
TTTGGAAAATGTATGAAGGA+TGG + chr3_1:61508775-61508794 Msa0366600:five_prime_UTR 30.0%
CAAGGTAAAAAATGCAATGA+GGG + chr3_1:61508921-61508940 Msa0366600:CDS 30.0%
GTTTGATTCTCTCTTCAATT+AGG - chr3_1:61508969-61508988 None:intergenic 30.0%
TTGAAGAGAGAATCAAACAA+TGG + chr3_1:61508971-61508990 Msa0366600:CDS 30.0%
AGAATCAAACAATGGAATGA+TGG + chr3_1:61508979-61508998 Msa0366600:CDS 30.0%
TCTTTATAATGTGTTAGCGT+TGG - chr3_1:61509141-61509160 None:intergenic 30.0%
TATGTGTGTGTATATATTGC+TGG - chr3_1:61509258-61509277 None:intergenic 30.0%
CTTGTAGTACTTTAAACGAA+AGG + chr3_1:61509306-61509325 Msa0366600:intron 30.0%
AGCACATTAAACTTCTATGT+AGG + chr3_1:61509428-61509447 Msa0366600:intron 30.0%
TTCTATGTAGGAATTGATGA+TGG + chr3_1:61509440-61509459 Msa0366600:intron 30.0%
AATATTGTCCAATTCTTCTG+TGG - chr3_1:61509542-61509561 None:intergenic 30.0%
GAAGAATTGGACAATATTGT+TGG + chr3_1:61509544-61509563 Msa0366600:three_prime_UTR 30.0%
TATTGTTGGAAAAGATAGAC+TGG + chr3_1:61509558-61509577 Msa0366600:three_prime_UTR 30.0%
GTTTAGGAATATCTGATTCT+TGG - chr3_1:61509585-61509604 None:intergenic 30.0%
TCCTAAACTAAACTTCTTGA+TGG + chr3_1:61509597-61509616 Msa0366600:three_prime_UTR 30.0%
TCTACGAATGATACAATGAT+TGG + chr3_1:61509679-61509698 Msa0366600:three_prime_UTR 30.0%
TGGAAATTACTTGATACCAA+AGG + chr3_1:61509699-61509718 Msa0366600:three_prime_UTR 30.0%
GGAAATTACTTGATACCAAA+GGG + chr3_1:61509700-61509719 Msa0366600:three_prime_UTR 30.0%
AACGTCATCTTAAGAATGAT+GGG + chr3_1:61509800-61509819 Msa0366600:three_prime_UTR 30.0%
AAGGATATGAACTTCAATTC+TGG - chr3_1:61509847-61509866 None:intergenic 30.0%
AAGTTCATATCCTTTAGTAC+AGG + chr3_1:61509853-61509872 Msa0366600:three_prime_UTR 30.0%
TGACTATAATGCTATTAGCT+AGG + chr3_1:61509914-61509933 Msa0366600:three_prime_UTR 30.0%
! ATCAATCTTTTCGATTCCAA+AGG + chr3_1:61509982-61510001 Msa0366600:three_prime_UTR 30.0%
ATCAAGAGATATAACACCTT+TGG - chr3_1:61510001-61510020 None:intergenic 30.0%
!! TCAAAGAAAGAAACTTGCTA+AGG - chr3_1:61510182-61510201 None:intergenic 30.0%
CTTCTTGAACACACTTAATA+TGG + chr3_1:61510249-61510268 Msa0366600:three_prime_UTR 30.0%
! TGTTTGAGAATGATTTGCGA+AGG + chr3_1:61508145-61508164 Msa0366600:five_prime_UTR 35.0%
! ATTACACTACTAGTTTCCTC+TGG + chr3_1:61508173-61508192 Msa0366600:five_prime_UTR 35.0%
CTCAGTAATGTAGCATCTTA+TGG - chr3_1:61508245-61508264 None:intergenic 35.0%
AGATTACCAACTATAGGCAA+TGG - chr3_1:61508304-61508323 None:intergenic 35.0%
TCAGGAAGATTACCAACTAT+AGG - chr3_1:61508310-61508329 None:intergenic 35.0%
ATTTCACTAGCTAGGCTTAT+TGG - chr3_1:61508499-61508518 None:intergenic 35.0%
TTGAGATGATTTCACTAGCT+AGG - chr3_1:61508507-61508526 None:intergenic 35.0%
GCTAGTGAAATCATCTCAAA+TGG + chr3_1:61508508-61508527 Msa0366600:five_prime_UTR 35.0%
! TTTTTCCATTGTTCGCCATA+GGG - chr3_1:61508556-61508575 None:intergenic 35.0%
TAGCAATCCTTACATTGACA+AGG - chr3_1:61508702-61508721 None:intergenic 35.0%
CTGATTATATCCCATGTTTG+AGG + chr3_1:61508868-61508887 Msa0366600:five_prime_UTR 35.0%
AGTCAAGTAACCTCAAACAT+GGG - chr3_1:61508881-61508900 None:intergenic 35.0%
AAGTCAAGTAACCTCAAACA+TGG - chr3_1:61508882-61508901 None:intergenic 35.0%
ACTTAGATGCATGGTCATAA+GGG + chr3_1:61508898-61508917 Msa0366600:exon 35.0%
GCAAGGTAAAAAATGCAATG+AGG + chr3_1:61508920-61508939 Msa0366600:CDS 35.0%
TGGATCAAAGAATGTTGAAG+AGG + chr3_1:61508999-61509018 Msa0366600:CDS 35.0%
TATTGTAAGACTTCACTCAC+CGG + chr3_1:61509101-61509120 Msa0366600:intron 35.0%
GTTGGTTGAAAAAGAAAAGC+CGG - chr3_1:61509123-61509142 None:intergenic 35.0%
GTTAATTTCCTAGCCAAAAG+TGG + chr3_1:61509165-61509184 Msa0366600:intron 35.0%
! ATTCTTTCACTCTCCACTTT+TGG - chr3_1:61509181-61509200 None:intergenic 35.0%
!! TATCAGAATTGGTGTTTTCG+TGG - chr3_1:61509366-61509385 None:intergenic 35.0%
! GCCATCAAGAAGTTTAGTTT+AGG - chr3_1:61509601-61509620 None:intergenic 35.0%
TGTATCATTCGTAGAGACAT+GGG - chr3_1:61509674-61509693 None:intergenic 35.0%
TTGTATCATTCGTAGAGACA+TGG - chr3_1:61509675-61509694 None:intergenic 35.0%
TTGGGAGAAATCCAAAAGTT+TGG + chr3_1:61509752-61509771 Msa0366600:three_prime_UTR 35.0%
!! CGTTCTGGTTTGAATTTGTA+GGG - chr3_1:61509784-61509803 None:intergenic 35.0%
!! ACGTTCTGGTTTGAATTTGT+AGG - chr3_1:61509785-61509804 None:intergenic 35.0%
TCATTCTTAAGATGACGTTC+TGG - chr3_1:61509799-61509818 None:intergenic 35.0%
GAACGTCATCTTAAGAATGA+TGG + chr3_1:61509799-61509818 Msa0366600:three_prime_UTR 35.0%
TCATATCCTTTAGTACAGGA+AGG + chr3_1:61509857-61509876 Msa0366600:three_prime_UTR 35.0%
!! AGAAAGAAACTTGCTAAGGA+AGG - chr3_1:61510178-61510197 None:intergenic 35.0%
! TGTTTGAGAATGATTTGCGA+AGG + chr3_1:61508145-61508164 Msa0366600:five_prime_UTR 35.0%
! ATTACACTACTAGTTTCCTC+TGG + chr3_1:61508173-61508192 Msa0366600:five_prime_UTR 35.0%
CTCAGTAATGTAGCATCTTA+TGG - chr3_1:61508245-61508264 None:intergenic 35.0%
AGATTACCAACTATAGGCAA+TGG - chr3_1:61508304-61508323 None:intergenic 35.0%
TCAGGAAGATTACCAACTAT+AGG - chr3_1:61508310-61508329 None:intergenic 35.0%
ATTTCACTAGCTAGGCTTAT+TGG - chr3_1:61508499-61508518 None:intergenic 35.0%
TTGAGATGATTTCACTAGCT+AGG - chr3_1:61508507-61508526 None:intergenic 35.0%
GCTAGTGAAATCATCTCAAA+TGG + chr3_1:61508508-61508527 Msa0366600:five_prime_UTR 35.0%
! TTTTTCCATTGTTCGCCATA+GGG - chr3_1:61508556-61508575 None:intergenic 35.0%
TAGCAATCCTTACATTGACA+AGG - chr3_1:61508702-61508721 None:intergenic 35.0%
CTGATTATATCCCATGTTTG+AGG + chr3_1:61508868-61508887 Msa0366600:five_prime_UTR 35.0%
AGTCAAGTAACCTCAAACAT+GGG - chr3_1:61508881-61508900 None:intergenic 35.0%
AAGTCAAGTAACCTCAAACA+TGG - chr3_1:61508882-61508901 None:intergenic 35.0%
ACTTAGATGCATGGTCATAA+GGG + chr3_1:61508898-61508917 Msa0366600:exon 35.0%
GCAAGGTAAAAAATGCAATG+AGG + chr3_1:61508920-61508939 Msa0366600:CDS 35.0%
TGGATCAAAGAATGTTGAAG+AGG + chr3_1:61508999-61509018 Msa0366600:CDS 35.0%
TATTGTAAGACTTCACTCAC+CGG + chr3_1:61509101-61509120 Msa0366600:intron 35.0%
GTTGGTTGAAAAAGAAAAGC+CGG - chr3_1:61509123-61509142 None:intergenic 35.0%
GTTAATTTCCTAGCCAAAAG+TGG + chr3_1:61509165-61509184 Msa0366600:intron 35.0%
! ATTCTTTCACTCTCCACTTT+TGG - chr3_1:61509181-61509200 None:intergenic 35.0%
!! TATCAGAATTGGTGTTTTCG+TGG - chr3_1:61509366-61509385 None:intergenic 35.0%
! GCCATCAAGAAGTTTAGTTT+AGG - chr3_1:61509601-61509620 None:intergenic 35.0%
TGTATCATTCGTAGAGACAT+GGG - chr3_1:61509674-61509693 None:intergenic 35.0%
TTGTATCATTCGTAGAGACA+TGG - chr3_1:61509675-61509694 None:intergenic 35.0%
TTGGGAGAAATCCAAAAGTT+TGG + chr3_1:61509752-61509771 Msa0366600:three_prime_UTR 35.0%
!! CGTTCTGGTTTGAATTTGTA+GGG - chr3_1:61509784-61509803 None:intergenic 35.0%
!! ACGTTCTGGTTTGAATTTGT+AGG - chr3_1:61509785-61509804 None:intergenic 35.0%
TCATTCTTAAGATGACGTTC+TGG - chr3_1:61509799-61509818 None:intergenic 35.0%
GAACGTCATCTTAAGAATGA+TGG + chr3_1:61509799-61509818 Msa0366600:three_prime_UTR 35.0%
TCATATCCTTTAGTACAGGA+AGG + chr3_1:61509857-61509876 Msa0366600:three_prime_UTR 35.0%
!! AGAAAGAAACTTGCTAAGGA+AGG - chr3_1:61510178-61510197 None:intergenic 35.0%
CATCAAGCCAAAAAGCCAAA+AGG - chr3_1:61508212-61508231 None:intergenic 40.0%
CCAACTATAGGCAATGGTTT+GGG - chr3_1:61508298-61508317 None:intergenic 40.0%
ACCAACTATAGGCAATGGTT+TGG - chr3_1:61508299-61508318 None:intergenic 40.0%
! GGTTTGTTTGCAAGCATTTC+AGG - chr3_1:61508328-61508347 None:intergenic 40.0%
TAGGTGGATACACAAGACTA+TGG + chr3_1:61508354-61508373 Msa0366600:five_prime_UTR 40.0%
TAACATGGACATTTCCTAGG+CGG - chr3_1:61508408-61508427 None:intergenic 40.0%
GGATAACATGGACATTTCCT+AGG - chr3_1:61508411-61508430 None:intergenic 40.0%
GACAAGTAACAGGGATAACA+TGG - chr3_1:61508423-61508442 None:intergenic 40.0%
ACCTCAATTCTTGTACCCTA+TGG + chr3_1:61508538-61508557 Msa0366600:five_prime_UTR 40.0%
! CTTTTTCCATTGTTCGCCAT+AGG - chr3_1:61508557-61508576 None:intergenic 40.0%
AAGAATTGTTCTCTCCACAC+AGG + chr3_1:61508596-61508615 Msa0366600:five_prime_UTR 40.0%
GGTTACTTGACTTAGATGCA+TGG + chr3_1:61508889-61508908 Msa0366600:exon 40.0%
GACTTAGATGCATGGTCATA+AGG + chr3_1:61508897-61508916 Msa0366600:exon 40.0%
!! GTAGGAATTGATGATGGCAA+TGG + chr3_1:61509446-61509465 Msa0366600:intron 40.0%
CAATCCATCCAATGCTTGAA+TGG + chr3_1:61509473-61509492 Msa0366600:exon 40.0%
!! ATGTCCATTCAAGCATTGGA+TGG - chr3_1:61509480-61509499 None:intergenic 40.0%
GCTAATGTCCATTCAAGCAT+TGG - chr3_1:61509484-61509503 None:intergenic 40.0%
!! GTGGCTTTTGGAAATAGTTC+TGG - chr3_1:61509523-61509542 None:intergenic 40.0%
TCCAAAAGCCACAGAAGAAT+TGG + chr3_1:61509531-61509550 Msa0366600:three_prime_UTR 40.0%
! TCCAATTCTTCTGTGGCTTT+TGG - chr3_1:61509535-61509554 None:intergenic 40.0%
GGAACATTGAAAGCCGTTAT+GGG - chr3_1:61509652-61509671 None:intergenic 40.0%
GTATCATTCGTAGAGACATG+GGG - chr3_1:61509673-61509692 None:intergenic 40.0%
AGCAATACATGACTACCCTT+TGG - chr3_1:61509718-61509737 None:intergenic 40.0%
AAGGGTAGTCATGTATTGCT+TGG + chr3_1:61509718-61509737 Msa0366600:three_prime_UTR 40.0%
CATGTATTGCTTGGAAGAAG+TGG + chr3_1:61509727-61509746 Msa0366600:three_prime_UTR 40.0%
! TAGGGTTCAGTCCAAACTTT+TGG - chr3_1:61509766-61509785 None:intergenic 40.0%
CTATTAGCTAGGTTACTCCA+TGG + chr3_1:61509925-61509944 Msa0366600:three_prime_UTR 40.0%
ATCTCTTGATGAGCCACTAA+CGG + chr3_1:61510011-61510030 Msa0366600:three_prime_UTR 40.0%
TACAATTCTGCTGCTAATCG+TGG - chr3_1:61510048-61510067 None:intergenic 40.0%
TTCAATTCTGCTGCTAATCG+TGG - chr3_1:61510100-61510119 None:intergenic 40.0%
!! AACTTGCTAAGGAAGGCTAT+TGG - chr3_1:61510171-61510190 None:intergenic 40.0%
CATCAAGCCAAAAAGCCAAA+AGG - chr3_1:61508212-61508231 None:intergenic 40.0%
CCAACTATAGGCAATGGTTT+GGG - chr3_1:61508298-61508317 None:intergenic 40.0%
ACCAACTATAGGCAATGGTT+TGG - chr3_1:61508299-61508318 None:intergenic 40.0%
! GGTTTGTTTGCAAGCATTTC+AGG - chr3_1:61508328-61508347 None:intergenic 40.0%
TAGGTGGATACACAAGACTA+TGG + chr3_1:61508354-61508373 Msa0366600:five_prime_UTR 40.0%
TAACATGGACATTTCCTAGG+CGG - chr3_1:61508408-61508427 None:intergenic 40.0%
GGATAACATGGACATTTCCT+AGG - chr3_1:61508411-61508430 None:intergenic 40.0%
GACAAGTAACAGGGATAACA+TGG - chr3_1:61508423-61508442 None:intergenic 40.0%
ACCTCAATTCTTGTACCCTA+TGG + chr3_1:61508538-61508557 Msa0366600:five_prime_UTR 40.0%
! CTTTTTCCATTGTTCGCCAT+AGG - chr3_1:61508557-61508576 None:intergenic 40.0%
AAGAATTGTTCTCTCCACAC+AGG + chr3_1:61508596-61508615 Msa0366600:five_prime_UTR 40.0%
GGTTACTTGACTTAGATGCA+TGG + chr3_1:61508889-61508908 Msa0366600:exon 40.0%
GACTTAGATGCATGGTCATA+AGG + chr3_1:61508897-61508916 Msa0366600:exon 40.0%
!! GTAGGAATTGATGATGGCAA+TGG + chr3_1:61509446-61509465 Msa0366600:intron 40.0%
CAATCCATCCAATGCTTGAA+TGG + chr3_1:61509473-61509492 Msa0366600:exon 40.0%
!! ATGTCCATTCAAGCATTGGA+TGG - chr3_1:61509480-61509499 None:intergenic 40.0%
GCTAATGTCCATTCAAGCAT+TGG - chr3_1:61509484-61509503 None:intergenic 40.0%
!! GTGGCTTTTGGAAATAGTTC+TGG - chr3_1:61509523-61509542 None:intergenic 40.0%
TCCAAAAGCCACAGAAGAAT+TGG + chr3_1:61509531-61509550 Msa0366600:three_prime_UTR 40.0%
! TCCAATTCTTCTGTGGCTTT+TGG - chr3_1:61509535-61509554 None:intergenic 40.0%
GGAACATTGAAAGCCGTTAT+GGG - chr3_1:61509652-61509671 None:intergenic 40.0%
GTATCATTCGTAGAGACATG+GGG - chr3_1:61509673-61509692 None:intergenic 40.0%
AGCAATACATGACTACCCTT+TGG - chr3_1:61509718-61509737 None:intergenic 40.0%
AAGGGTAGTCATGTATTGCT+TGG + chr3_1:61509718-61509737 Msa0366600:three_prime_UTR 40.0%
CATGTATTGCTTGGAAGAAG+TGG + chr3_1:61509727-61509746 Msa0366600:three_prime_UTR 40.0%
! TAGGGTTCAGTCCAAACTTT+TGG - chr3_1:61509766-61509785 None:intergenic 40.0%
CTATTAGCTAGGTTACTCCA+TGG + chr3_1:61509925-61509944 Msa0366600:three_prime_UTR 40.0%
ATCTCTTGATGAGCCACTAA+CGG + chr3_1:61510011-61510030 Msa0366600:three_prime_UTR 40.0%
TACAATTCTGCTGCTAATCG+TGG - chr3_1:61510048-61510067 None:intergenic 40.0%
TTCAATTCTGCTGCTAATCG+TGG - chr3_1:61510100-61510119 None:intergenic 40.0%
!! AACTTGCTAAGGAAGGCTAT+TGG - chr3_1:61510171-61510190 None:intergenic 40.0%
AAAAGCCAAAAGGACTGGGA+TGG - chr3_1:61508202-61508221 None:intergenic 45.0%
!!! TCCCAGTCCTTTTGGCTTTT+TGG + chr3_1:61508202-61508221 Msa0366600:five_prime_UTR 45.0%
GCCAAAAAGCCAAAAGGACT+GGG - chr3_1:61508206-61508225 None:intergenic 45.0%
AGCCAAAAAGCCAAAAGGAC+TGG - chr3_1:61508207-61508226 None:intergenic 45.0%
! GGGGGAAGTTTAGGTTTGTT+GGG - chr3_1:61508271-61508290 None:intergenic 45.0%
! AGGGGGAAGTTTAGGTTTGT+TGG - chr3_1:61508272-61508291 None:intergenic 45.0%
AACAAACCTAAACTTCCCCC+TGG + chr3_1:61508271-61508290 Msa0366600:five_prime_UTR 45.0%
CCCAAACCATTGCCTATAGT+TGG + chr3_1:61508295-61508314 Msa0366600:five_prime_UTR 45.0%
TTGCAAACAAACCTGCAGCT+AGG + chr3_1:61508335-61508354 Msa0366600:five_prime_UTR 45.0%
CAATGGAGGGACAAGTAACA+GGG - chr3_1:61508432-61508451 None:intergenic 45.0%
AAGAATTCACGGGCAATGGA+GGG - chr3_1:61508445-61508464 None:intergenic 45.0%
TCTCAAGAATTCACGGGCAA+TGG - chr3_1:61508449-61508468 None:intergenic 45.0%
GCCATAGGGTACAAGAATTG+AGG - chr3_1:61508542-61508561 None:intergenic 45.0%
TTGTACCCTATGGCGAACAA+TGG + chr3_1:61508548-61508567 Msa0366600:five_prime_UTR 45.0%
!! ATGGTGGCCTTGTCAATGTA+AGG + chr3_1:61508692-61508711 Msa0366600:five_prime_UTR 45.0%
!! TTCACTCTCCACTTTTGGCT+AGG - chr3_1:61509176-61509195 None:intergenic 45.0%
!! GGAATTGATGATGGCAATGG+TGG + chr3_1:61509449-61509468 Msa0366600:intron 45.0%
TTTCTGCCTGCATCCCATAA+CGG + chr3_1:61509636-61509655 Msa0366600:three_prime_UTR 45.0%
GGGAACATTGAAAGCCGTTA+TGG - chr3_1:61509653-61509672 None:intergenic 45.0%
TTGCTTGGAAGAAGTGGTCT+TGG + chr3_1:61509733-61509752 Msa0366600:three_prime_UTR 45.0%
TGCTTGGAAGAAGTGGTCTT+GGG + chr3_1:61509734-61509753 Msa0366600:three_prime_UTR 45.0%
AAAAGCCAAAAGGACTGGGA+TGG - chr3_1:61508202-61508221 None:intergenic 45.0%
!!! TCCCAGTCCTTTTGGCTTTT+TGG + chr3_1:61508202-61508221 Msa0366600:five_prime_UTR 45.0%
GCCAAAAAGCCAAAAGGACT+GGG - chr3_1:61508206-61508225 None:intergenic 45.0%
AGCCAAAAAGCCAAAAGGAC+TGG - chr3_1:61508207-61508226 None:intergenic 45.0%
! GGGGGAAGTTTAGGTTTGTT+GGG - chr3_1:61508271-61508290 None:intergenic 45.0%
! AGGGGGAAGTTTAGGTTTGT+TGG - chr3_1:61508272-61508291 None:intergenic 45.0%
AACAAACCTAAACTTCCCCC+TGG + chr3_1:61508271-61508290 Msa0366600:five_prime_UTR 45.0%
CCCAAACCATTGCCTATAGT+TGG + chr3_1:61508295-61508314 Msa0366600:five_prime_UTR 45.0%
TTGCAAACAAACCTGCAGCT+AGG + chr3_1:61508335-61508354 Msa0366600:five_prime_UTR 45.0%
CAATGGAGGGACAAGTAACA+GGG - chr3_1:61508432-61508451 None:intergenic 45.0%
AAGAATTCACGGGCAATGGA+GGG - chr3_1:61508445-61508464 None:intergenic 45.0%
TCTCAAGAATTCACGGGCAA+TGG - chr3_1:61508449-61508468 None:intergenic 45.0%
GCCATAGGGTACAAGAATTG+AGG - chr3_1:61508542-61508561 None:intergenic 45.0%
TTGTACCCTATGGCGAACAA+TGG + chr3_1:61508548-61508567 Msa0366600:five_prime_UTR 45.0%
!! ATGGTGGCCTTGTCAATGTA+AGG + chr3_1:61508692-61508711 Msa0366600:five_prime_UTR 45.0%
!! TTCACTCTCCACTTTTGGCT+AGG - chr3_1:61509176-61509195 None:intergenic 45.0%
!! GGAATTGATGATGGCAATGG+TGG + chr3_1:61509449-61509468 Msa0366600:intron 45.0%
TTTCTGCCTGCATCCCATAA+CGG + chr3_1:61509636-61509655 Msa0366600:three_prime_UTR 45.0%
GGGAACATTGAAAGCCGTTA+TGG - chr3_1:61509653-61509672 None:intergenic 45.0%
TTGCTTGGAAGAAGTGGTCT+TGG + chr3_1:61509733-61509752 Msa0366600:three_prime_UTR 45.0%
TGCTTGGAAGAAGTGGTCTT+GGG + chr3_1:61509734-61509753 Msa0366600:three_prime_UTR 45.0%
! GGTTACCATCCCAGTCCTTT+TGG + chr3_1:61508194-61508213 Msa0366600:five_prime_UTR 50.0%
! TAGGCAATGGTTTGGGACCA+GGG - chr3_1:61508291-61508310 None:intergenic 50.0%
! ATAGGCAATGGTTTGGGACC+AGG - chr3_1:61508292-61508311 None:intergenic 50.0%
CAAACAAACCTGCAGCTAGG+TGG + chr3_1:61508338-61508357 Msa0366600:five_prime_UTR 50.0%
TTGTGTATCCACCTAGCTGC+AGG - chr3_1:61508349-61508368 None:intergenic 50.0%
GCAATGGAGGGACAAGTAAC+AGG - chr3_1:61508433-61508452 None:intergenic 50.0%
CAAGAATTCACGGGCAATGG+AGG - chr3_1:61508446-61508465 None:intergenic 50.0%
TCTCTCCACACAGGCATCAA+TGG + chr3_1:61508605-61508624 Msa0366600:five_prime_UTR 50.0%
TGAAGCCATTGATGCCTGTG+TGG - chr3_1:61508613-61508632 None:intergenic 50.0%
GATGCATGGTCATAAGGGCA+AGG + chr3_1:61508903-61508922 Msa0366600:exon 50.0%
TGAAAGCCGTTATGGGATGC+AGG - chr3_1:61509645-61509664 None:intergenic 50.0%
TCCTTTAGTACAGGAAGGCG+TGG + chr3_1:61509862-61509881 Msa0366600:three_prime_UTR 50.0%
ACCACGCCTTCCTGTACTAA+AGG - chr3_1:61509866-61509885 None:intergenic 50.0%
GGTTGTCCTGGTATCATGCT+TGG + chr3_1:61509883-61509902 Msa0366600:three_prime_UTR 50.0%
GGTTACTCCATGGCTTCACT+TGG + chr3_1:61509935-61509954 Msa0366600:three_prime_UTR 50.0%
! GGTTACCATCCCAGTCCTTT+TGG + chr3_1:61508194-61508213 Msa0366600:five_prime_UTR 50.0%
! TAGGCAATGGTTTGGGACCA+GGG - chr3_1:61508291-61508310 None:intergenic 50.0%
! ATAGGCAATGGTTTGGGACC+AGG - chr3_1:61508292-61508311 None:intergenic 50.0%
CAAACAAACCTGCAGCTAGG+TGG + chr3_1:61508338-61508357 Msa0366600:five_prime_UTR 50.0%
TTGTGTATCCACCTAGCTGC+AGG - chr3_1:61508349-61508368 None:intergenic 50.0%
GCAATGGAGGGACAAGTAAC+AGG - chr3_1:61508433-61508452 None:intergenic 50.0%
CAAGAATTCACGGGCAATGG+AGG - chr3_1:61508446-61508465 None:intergenic 50.0%
TCTCTCCACACAGGCATCAA+TGG + chr3_1:61508605-61508624 Msa0366600:five_prime_UTR 50.0%
TGAAGCCATTGATGCCTGTG+TGG - chr3_1:61508613-61508632 None:intergenic 50.0%
GATGCATGGTCATAAGGGCA+AGG + chr3_1:61508903-61508922 Msa0366600:exon 50.0%
TGAAAGCCGTTATGGGATGC+AGG - chr3_1:61509645-61509664 None:intergenic 50.0%
TCCTTTAGTACAGGAAGGCG+TGG + chr3_1:61509862-61509881 Msa0366600:three_prime_UTR 50.0%
ACCACGCCTTCCTGTACTAA+AGG - chr3_1:61509866-61509885 None:intergenic 50.0%
GGTTGTCCTGGTATCATGCT+TGG + chr3_1:61509883-61509902 Msa0366600:three_prime_UTR 50.0%
GGTTACTCCATGGCTTCACT+TGG + chr3_1:61509935-61509954 Msa0366600:three_prime_UTR 50.0%
AGGACTGGGATGGTAACCAG+AGG - chr3_1:61508192-61508211 None:intergenic 55.0%
TTGGGACCAGGGGGAAGTTT+AGG - chr3_1:61508280-61508299 None:intergenic 55.0%
! AGGCAATGGTTTGGGACCAG+GGG - chr3_1:61508290-61508309 None:intergenic 55.0%
GAAATAGCGCGTATCCGCCT+AGG + chr3_1:61508391-61508410 Msa0366600:five_prime_UTR 55.0%
GTGGAGCCAAGCATGATACC+AGG - chr3_1:61509892-61509911 None:intergenic 55.0%
GTGCACTCCAAGTGAAGCCA+TGG - chr3_1:61509945-61509964 None:intergenic 55.0%
GGCTTTGCTGCAACCGTTAG+TGG - chr3_1:61510027-61510046 None:intergenic 55.0%
AGGACTGGGATGGTAACCAG+AGG - chr3_1:61508192-61508211 None:intergenic 55.0%
TTGGGACCAGGGGGAAGTTT+AGG - chr3_1:61508280-61508299 None:intergenic 55.0%
! AGGCAATGGTTTGGGACCAG+GGG - chr3_1:61508290-61508309 None:intergenic 55.0%
GAAATAGCGCGTATCCGCCT+AGG + chr3_1:61508391-61508410 Msa0366600:five_prime_UTR 55.0%
GTGGAGCCAAGCATGATACC+AGG - chr3_1:61509892-61509911 None:intergenic 55.0%
GTGCACTCCAAGTGAAGCCA+TGG - chr3_1:61509945-61509964 None:intergenic 55.0%
GGCTTTGCTGCAACCGTTAG+TGG - chr3_1:61510027-61510046 None:intergenic 55.0%
! GGCAATGGTTTGGGACCAGG+GGG - chr3_1:61508289-61508308 None:intergenic 60.0%
! ACAGGAAGGCGTGGTTGTCC+TGG + chr3_1:61509871-61509890 Msa0366600:three_prime_UTR 60.0%
! GGCAATGGTTTGGGACCAGG+GGG - chr3_1:61508289-61508308 None:intergenic 60.0%
! ACAGGAAGGCGTGGTTGTCC+TGG + chr3_1:61509871-61509890 Msa0366600:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 61508098 61510410 61508098 ID=Msa0366600;Name=Msa0366600
chr3_1 mRNA 61508098 61510410 61508098 ID=Msa0366600-mRNA-1;Parent=Msa0366600;Name=Msa0366600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=806|1|1|1|0|0|2|919|80
chr3_1 exon 61508098 61509104 61508098 ID=Msa0366600-mRNA-1:exon:11924;Parent=Msa0366600-mRNA-1
chr3_1 exon 61509450 61510410 61509450 ID=Msa0366600-mRNA-1:exon:11925;Parent=Msa0366600-mRNA-1
chr3_1 five_prime_UTR 61508098 61508903 61508098 ID=Msa0366600-mRNA-1:five_prime_utr;Parent=Msa0366600-mRNA-1
chr3_1 CDS 61508904 61509104 61508904 ID=Msa0366600-mRNA-1:cds;Parent=Msa0366600-mRNA-1
chr3_1 CDS 61509450 61509491 61509450 ID=Msa0366600-mRNA-1:cds;Parent=Msa0366600-mRNA-1
chr3_1 three_prime_UTR 61509492 61510410 61509492 ID=Msa0366600-mRNA-1:three_prime_utr;Parent=Msa0366600-mRNA-1
Gene Sequence

>Msa0366600

ATGCATGGTCATAAGGGCAAGGTAAAAAATGCAATGAGGGCAATCAACAATTATCATAATTCCCTAATTGAAGAGAGAATCAAACAATGGAATGATGGATCAAAGAATGTTGAAGAGGACTTGCTAGATGTTTTGATCACGCTGAAAGATGTCAACAATAATCCGTTATTAACAATGAAGGATATCAAGGCACAAGTTATTGAATTGATGATGGCAATGGTGGACAATCCATCCAATGCTTGA
Protein sequence

>Msa0366600

MHGHKGKVKNAMRAINNYHNSLIEERIKQWNDGSKNVEEDLLDVLITLKDVNNNPLLTMKDIKAQVIELMMAMVDNPSNA*