AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0506020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506020 MtrunA17_Chr3g0107541 91.584 202 17 0 18 219 59 260 2.08e-137 395
Msa0506020 MtrunA17_Chr3g0107561 80.734 218 42 0 2 219 38 255 1.85e-135 383
Msa0506020 MtrunA17_Chr3g0105751 79.717 212 43 0 8 219 46 257 2.57e-129 370
Msa0506020 MtrunA17_Chr3g0107611 73.303 221 56 1 1 218 42 262 2.64e-118 347
Msa0506020 MtrunA17_Chr8g0370651 61.086 221 83 1 2 219 37 257 1.86e-94 285
Msa0506020 MtrunA17_Chr8g0370641 61.290 217 81 1 6 219 37 253 1.10e-93 283
Msa0506020 MtrunA17_Chr3g0107581 68.421 152 42 2 39 187 1 149 3.09e-75 224
Msa0506020 MtrunA17_Chr8g0372341 60.759 158 59 1 17 171 52 209 4.33e-66 202
Msa0506020 MtrunA17_Chr3g0101811 32.227 211 125 6 9 213 37 235 1.41e-23 98.2
Msa0506020 MtrunA17_Chr5g0403351 29.577 213 131 5 8 217 33 229 2.41e-23 97.4
Msa0506020 MtrunA17_Chr1g0162801 31.383 188 122 4 7 194 35 215 2.80e-23 97.1
Msa0506020 MtrunA17_Chr6g0484811 32.569 218 127 7 5 219 33 233 3.42e-23 97.1
Msa0506020 MtrunA17_Chr3g0101731 29.858 211 130 6 9 213 36 234 3.99e-23 96.7
Msa0506020 MtrunA17_Chr3g0101611 29.302 215 130 5 4 215 33 228 6.04e-23 96.3
Msa0506020 MtrunA17_Chr3g0101601 33.702 181 105 5 2 179 29 197 2.44e-22 94.4
Msa0506020 MtrunA17_Chr3g0101621 33.333 183 103 5 2 179 26 194 3.21e-22 94.0
Msa0506020 MtrunA17_Chr7g0254641 30.137 219 139 5 2 216 30 238 6.20e-22 93.2
Msa0506020 MtrunA17_Chr3g0101661 28.095 210 130 4 9 215 38 229 1.03e-21 92.8
Msa0506020 MtrunA17_Chr6g0484841 31.336 217 129 5 8 221 36 235 1.13e-21 92.4
Msa0506020 MtrunA17_Chr5g0431641 34.965 143 90 2 9 151 38 177 1.46e-21 92.4
Msa0506020 MtrunA17_Chr3g0101711 30.178 169 108 3 7 172 35 196 1.60e-21 92.0
Msa0506020 MtrunA17_Chr5g0446161 35.374 147 85 3 8 151 40 179 1.64e-21 92.0
Msa0506020 MtrunA17_Chr8g0382901 30.137 219 131 5 8 221 491 692 2.16e-21 92.0
Msa0506020 MtrunA17_Chr8g0382901 30.000 180 123 2 2 181 21 197 6.63e-18 82.0
Msa0506020 MtrunA17_Chr3g0086691 29.208 202 138 2 18 219 41 237 3.02e-21 91.3
Msa0506020 MtrunA17_Chr3g0101571 30.409 171 108 4 8 175 35 197 4.77e-21 90.9
Msa0506020 MtrunA17_Chr3g0101701 28.302 212 131 6 7 215 36 229 9.47e-21 90.1
Msa0506020 MtrunA17_Chr3g0101631 34.722 144 86 2 2 142 29 167 1.03e-20 89.7
Msa0506020 MtrunA17_Chr3g0086661 28.713 202 139 2 18 219 41 237 1.23e-20 89.7
Msa0506020 MtrunA17_Chr5g0445531 28.638 213 136 6 9 220 38 235 1.99e-20 89.0
Msa0506020 MtrunA17_Chr8g0361471 29.064 203 129 5 9 211 34 221 2.04e-20 89.0
Msa0506020 MtrunA17_Chr3g0101691 28.788 198 123 6 5 196 34 219 2.28e-20 89.0
Msa0506020 MtrunA17_Chr5g0445751 26.396 197 133 4 5 198 40 227 2.40e-20 87.4
Msa0506020 MtrunA17_Chr3g0101801 32.164 171 107 4 9 179 42 203 2.93e-20 88.6
Msa0506020 MtrunA17_Chr5g0431671 28.365 208 136 4 9 216 38 232 3.09e-20 88.6
Msa0506020 MtrunA17_Chr6g0466331 29.064 203 129 5 9 211 34 221 4.08e-20 88.2
Msa0506020 MtrunA17_Chr3g0086651 28.218 202 140 2 18 219 41 237 4.23e-20 88.2
Msa0506020 MtrunA17_Chr5g0445421 33.793 145 91 3 8 151 111 251 4.55e-20 88.2
Msa0506020 MtrunA17_Chr4g0020041 33.094 139 85 2 1 136 29 162 5.39e-20 87.8
Msa0506020 MtrunA17_Chr3g0101581 34.091 132 78 3 8 136 36 161 8.79e-20 87.0
Msa0506020 MtrunA17_Chr3g0101831 30.806 211 128 6 9 213 37 235 8.99e-20 87.0
Msa0506020 MtrunA17_Chr5g0446151 35.172 145 84 3 9 150 41 178 9.71e-20 87.0
Msa0506020 MtrunA17_Chr3g0101671 29.557 203 128 5 9 211 38 225 9.95e-20 87.0
Msa0506020 MtrunA17_Chr8g0357431 29.885 174 107 5 9 179 37 198 1.20e-19 86.7
Msa0506020 MtrunA17_Chr3g0101651 27.143 210 132 4 9 215 38 229 1.67e-19 86.3
Msa0506020 MtrunA17_Chr5g0445441 29.245 212 128 5 8 215 78 271 2.26e-19 85.9
Msa0506020 MtrunA17_Chr6g0465511 29.064 203 129 5 9 211 34 221 2.71e-19 85.9
Msa0506020 MtrunA17_Chr2g0280261 32.877 146 88 3 9 151 34 172 3.27e-19 85.5
Msa0506020 MtrunA17_Chr2g0310381 28.251 223 139 5 5 221 23 230 3.74e-19 85.1
Msa0506020 MtrunA17_Chr5g0403321 32.639 144 95 1 8 151 33 174 4.91e-19 85.1
Msa0506020 MtrunA17_Chr1g0167321 33.333 150 93 3 2 151 30 172 4.98e-19 85.1
Msa0506020 MtrunA17_Chr2g0310391 27.189 217 142 3 8 221 27 230 5.49e-19 84.7
Msa0506020 MtrunA17_Chr4g0076161 32.576 132 83 2 8 136 36 164 5.74e-19 84.7
Msa0506020 MtrunA17_Chr5g0445381 30.622 209 129 7 9 216 69 262 7.98e-19 84.3
Msa0506020 MtrunA17_Chr6g0463611 29.927 137 90 2 8 141 48 181 8.28e-19 83.2
Msa0506020 MtrunA17_Chr3g0101821 32.117 137 85 2 9 142 35 166 1.03e-18 84.0
Msa0506020 MtrunA17_Chr3g0101761 30.061 163 104 3 9 168 35 190 1.10e-18 84.0
Msa0506020 MtrunA17_Chr5g0445451 28.837 215 127 5 8 216 37 231 1.25e-18 84.0
Msa0506020 MtrunA17_Chr3g0101751 32.117 137 85 2 9 142 42 173 2.36e-18 83.2
Msa0506020 MtrunA17_Chr5g0430031 26.364 220 136 5 8 221 36 235 3.59e-18 82.4
Msa0506020 MtrunA17_Chr5g0430101 30.180 222 125 6 8 221 35 234 3.64e-18 82.4
Msa0506020 MtrunA17_Chr5g0445411 33.594 128 84 1 9 136 45 171 4.07e-18 78.6
Msa0506020 MtrunA17_Chr6g0463801 31.507 146 90 3 9 151 37 175 6.60e-18 81.6
Msa0506020 MtrunA17_Chr3g0101721 28.436 211 133 6 9 213 37 235 8.54e-18 81.3
Msa0506020 MtrunA17_Chr8g0344151 27.397 219 145 6 5 220 32 239 9.79e-18 81.3
Msa0506020 MtrunA17_Chr1g0162811 26.901 171 121 2 5 175 33 199 1.08e-17 81.3
Msa0506020 MtrunA17_Chr5g0445461 31.250 144 96 2 8 151 37 177 1.50e-17 80.5
Msa0506020 MtrunA17_Chr6g0463791 29.197 137 91 2 8 141 34 167 1.76e-17 80.5
Msa0506020 MtrunA17_Chr8g0372251 28.302 212 126 8 10 216 36 226 2.74e-17 80.1
Msa0506020 MtrunA17_Chr4g0058231 26.699 206 133 4 10 212 29 219 2.87e-17 79.7
Msa0506020 MtrunA17_Chr4g0057001 29.032 217 142 5 5 219 44 250 3.11e-17 79.7
Msa0506020 MtrunA17_Chr7g0246131 25.114 219 150 3 1 216 26 233 3.33e-17 79.7
Msa0506020 MtrunA17_Chr3g0116741 27.928 222 132 6 5 217 47 249 4.10e-17 79.3
Msa0506020 MtrunA17_Chr5g0403331 29.545 132 87 2 8 136 34 162 5.17e-17 79.0
Msa0506020 MtrunA17_Chr8g0339311 29.358 218 139 6 3 208 38 252 5.40e-17 79.0
Msa0506020 MtrunA17_Chr4g0058201 28.283 198 133 2 2 196 21 212 5.94e-17 79.0
Msa0506020 MtrunA17_Chr8g0344181 27.982 218 143 6 6 220 35 241 7.14e-17 78.6
Msa0506020 MtrunA17_Chr8g0357421 28.235 170 112 3 9 175 37 199 7.29e-17 78.6
Msa0506020 MtrunA17_Chr8g0344191 27.523 218 144 6 6 220 66 272 1.01e-16 78.2
Msa0506020 MtrunA17_Chr1g0205371 25.571 219 146 5 1 216 28 232 1.04e-16 78.2
Msa0506020 MtrunA17_Chr5g0430091 28.636 220 131 5 8 221 36 235 1.68e-16 77.8
Msa0506020 MtrunA17_Chr4g0024771 31.176 170 107 6 3 167 30 194 1.69e-16 77.8
Msa0506020 MtrunA17_Chr5g0395331 28.182 220 143 5 1 216 29 237 2.29e-16 77.4
Msa0506020 MtrunA17_Chr7g0235551 27.189 217 141 6 8 220 32 235 2.81e-16 77.0
Msa0506020 MtrunA17_Chr1g0174441 33.099 142 94 1 10 151 55 195 2.84e-16 77.0
Msa0506020 MtrunA17_Chr5g0401681 26.389 216 146 5 9 219 32 239 3.48e-16 76.6
Msa0506020 MtrunA17_Chr5g0402971 26.267 217 145 6 10 219 41 249 4.02e-16 75.9
Msa0506020 MtrunA17_Chr5g0430171 29.167 216 123 7 8 215 36 229 5.28e-16 73.9
Msa0506020 MtrunA17_Chr1g0200961 25.822 213 143 4 10 219 29 229 6.16e-16 75.9
Msa0506020 MtrunA17_Chr4g0061381 27.536 207 135 6 18 219 40 236 6.29e-16 75.9
Msa0506020 MtrunA17_Chr5g0430111 28.571 217 135 5 8 221 36 235 7.13e-16 75.5
Msa0506020 MtrunA17_Chr5g0430081 35.606 132 76 3 8 136 34 159 7.90e-16 75.9
Msa0506020 MtrunA17_Chr5g0431501 25.000 204 140 4 9 210 33 225 8.82e-16 75.5
Msa0506020 MtrunA17_Chr5g0431461 25.000 204 140 4 9 210 33 225 8.82e-16 75.5
Msa0506020 MtrunA17_Chr4g0052851 25.352 213 142 6 9 219 33 230 1.17e-15 75.1
Msa0506020 MtrunA17_Chr1g0156101 31.159 138 87 2 2 136 25 157 1.92e-15 74.7
Msa0506020 MtrunA17_Chr8g0390881 25.806 217 133 5 10 219 37 232 2.54e-15 74.3
Msa0506020 MtrunA17_Chr7g0246221 25.346 217 148 3 3 216 28 233 2.70e-15 73.9
Msa0506020 MtrunA17_Chr1g0174461 30.986 142 96 2 10 151 36 175 3.20e-15 73.9
Msa0506020 MtrunA17_Chr5g0432751 24.645 211 144 5 8 213 32 232 3.43e-15 73.9
Msa0506020 MtrunA17_Chr8g0356001 26.147 218 145 5 5 219 37 241 4.32e-15 73.6
Msa0506020 MtrunA17_Chr5g0431631 33.036 112 74 1 9 120 50 160 4.44e-15 70.1
Msa0506020 MtrunA17_Chr5g0430131 28.899 218 129 5 10 221 38 235 4.75e-15 73.6
Msa0506020 MtrunA17_Chr1g0156081 30.435 138 88 2 2 136 49 181 5.34e-15 73.2
Msa0506020 MtrunA17_Chr4g0035921 34.146 123 74 2 10 130 38 155 6.01e-15 73.2
Msa0506020 MtrunA17_Chr7g0218611 25.592 211 142 4 9 216 33 231 7.02e-15 72.8
Msa0506020 MtrunA17_Chr7g0258221 27.545 167 112 3 6 169 31 191 8.17e-15 72.8
Msa0506020 MtrunA17_Chr5g0405001 26.512 215 134 7 6 216 41 235 1.47e-14 72.0
Msa0506020 MtrunA17_Chr1g0156061 33.594 128 76 3 10 133 56 178 1.77e-14 71.6
Msa0506020 MtrunA17_Chr4g0047691 27.650 217 135 5 2 215 45 242 1.83e-14 71.6
Msa0506020 MtrunA17_Chr3g0094171 23.394 218 152 4 5 219 36 241 2.76e-14 71.2
Msa0506020 MtrunA17_Chr7g0255531 25.116 215 145 4 8 215 27 232 3.57e-14 70.9
Msa0506020 MtrunA17_Chr7g0218601 26.190 210 142 5 9 216 34 232 3.61e-14 70.9
Msa0506020 MtrunA17_Chr2g0304871 25.792 221 147 7 6 217 34 246 3.79e-14 70.9
Msa0506020 MtrunA17_Chr5g0401691 25.234 214 150 5 8 220 50 254 3.80e-14 70.9
Msa0506020 MtrunA17_Chr8g0355961 25.463 216 145 4 5 217 37 239 4.44e-14 70.5
Msa0506020 MtrunA17_Chr5g0395321 26.027 219 139 4 1 216 34 232 4.55e-14 70.5
Msa0506020 MtrunA17_Chr1g0205361 24.658 219 148 6 1 216 27 231 6.19e-14 70.1
Msa0506020 MtrunA17_Chr4g0052881 27.982 218 139 6 9 218 32 239 6.19e-14 70.1
Msa0506020 MtrunA17_Chr4g0052861 26.415 212 149 5 9 218 32 238 8.70e-14 69.7
Msa0506020 MtrunA17_Chr4g0058281 26.108 203 141 3 10 209 47 243 8.75e-14 69.7
Msa0506020 MtrunA17_Chr4g0053621 29.651 172 113 4 9 175 31 199 1.33e-13 69.3
Msa0506020 MtrunA17_Chr5g0395381 31.373 153 95 4 1 150 34 179 3.02e-13 68.2
Msa0506020 MtrunA17_Chr4g0011901 25.714 210 141 5 10 216 30 227 3.23e-13 68.2
Msa0506020 MtrunA17_Chr4g0039901 25.943 212 141 8 8 216 34 232 3.25e-13 68.2
Msa0506020 MtrunA17_Chr4g0011881 25.346 217 146 6 3 216 25 228 3.46e-13 67.8
Msa0506020 MtrunA17_Chr6g0451681 26.667 210 138 4 1 198 52 257 3.68e-13 67.8
Msa0506020 MtrunA17_Chr1g0174451 29.252 147 102 2 5 151 32 176 3.89e-13 67.8
Msa0506020 MtrunA17_Chr5g0419691 25.359 209 143 4 10 216 30 227 5.39e-13 67.4
Msa0506020 MtrunA17_Chr1g0176831 25.000 212 147 4 6 216 60 260 6.01e-13 67.4
Msa0506020 MtrunA17_Chr4g0058261 26.364 220 142 6 3 217 56 260 7.94e-13 67.0
Msa0506020 MtrunA17_Chr2g0310371 36.283 113 63 2 8 117 27 133 1.13e-12 63.2
Msa0506020 MtrunA17_Chr3g0116681 26.267 217 143 7 2 215 33 235 1.15e-12 66.2
Msa0506020 MtrunA17_Chr4g0017411 26.291 213 140 8 9 219 30 227 1.78e-12 65.9
Msa0506020 MtrunA17_Chr4g0011871 23.671 207 150 3 10 216 30 228 1.93e-12 65.9
Msa0506020 MtrunA17_Chr1g0174421 28.671 143 100 2 9 151 47 187 2.44e-12 65.1
Msa0506020 MtrunA17_Chr1g0174471 29.861 144 92 3 11 151 52 189 3.02e-12 65.1
Msa0506020 MtrunA17_Chr4g0011931 23.671 207 149 3 10 216 30 227 3.60e-12 64.3
Msa0506020 MtrunA17_Chr4g0030701 25.455 165 120 1 10 174 36 197 4.51e-12 64.7
Msa0506020 MtrunA17_Chr4g0058191 23.113 212 144 4 5 212 21 217 5.93e-12 64.3
Msa0506020 MtrunA17_Chr4g0011921 24.155 207 148 3 10 216 30 227 6.43e-12 64.3
Msa0506020 MtrunA17_Chr2g0296651 25.701 214 149 5 9 218 31 238 6.82e-12 64.3
Msa0506020 MtrunA17_Chr5g0406651 25.238 210 144 4 9 216 30 228 7.48e-12 63.9
Msa0506020 MtrunA17_Chr1g0207841 23.684 190 133 3 35 220 58 239 8.33e-12 63.9
Msa0506020 MtrunA17_Chr4g0011861 23.039 204 143 3 10 210 30 222 9.11e-12 63.2
Msa0506020 MtrunA17_Chr5g0431511 22.059 204 146 3 9 210 33 225 1.04e-11 63.5
Msa0506020 MtrunA17_Chr6g0484771 28.571 119 85 0 50 168 4 122 1.27e-11 60.5
Msa0506020 MtrunA17_Chr1g0197891 25.472 212 140 5 8 216 33 229 1.34e-11 63.2
Msa0506020 MtrunA17_Chr6g0451751 23.113 212 145 4 17 217 49 253 1.50e-11 63.2
Msa0506020 MtrunA17_Chr2g0314721 24.880 209 145 5 9 216 44 241 1.68e-11 63.2
Msa0506020 MtrunA17_Chr2g0296661 25.128 195 130 5 35 218 52 241 1.70e-11 63.2
Msa0506020 MtrunA17_Chr1g0197851 25.472 212 140 5 8 216 33 229 2.28e-11 62.8
Msa0506020 MtrunA17_Chr1g0197881 25.472 212 140 5 8 216 32 228 2.36e-11 62.4
Msa0506020 MtrunA17_Chr3g0101741 32.174 115 73 2 49 163 3 112 2.49e-11 62.4
Msa0506020 MtrunA17_Chr4g0047641 25.000 176 113 4 2 165 43 211 3.12e-11 62.4
Msa0506020 MtrunA17_Chr6g0466901 26.106 226 151 6 2 217 26 245 3.37e-11 62.0
Msa0506020 MtrunA17_Chr4g0047631 24.885 217 141 4 2 215 42 239 5.95e-11 61.2
Msa0506020 MtrunA17_Chr4g0011961 26.667 210 139 6 10 216 30 227 6.81e-11 61.2
Msa0506020 MtrunA17_Chr8g0362701 28.455 123 85 1 32 151 52 174 9.39e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506020 AT4G39950.1 51.802 222 104 2 1 219 46 267 4.68e-80 249
Msa0506020 AT2G22330.1 53.302 212 98 1 9 219 58 269 1.35e-79 248
Msa0506020 AT4G39950.2 51.802 222 104 2 1 219 86 307 1.59e-79 249
Msa0506020 AT2G22330.2 53.302 212 98 1 9 219 81 292 1.83e-79 248
Msa0506020 AT5G05260.1 51.835 218 98 4 9 219 40 257 2.85e-75 236
Msa0506020 AT5G05260.2 51.835 218 98 4 9 219 40 257 8.11e-75 235
Msa0506020 AT5G35917.1 50.909 220 99 4 9 219 42 261 7.74e-73 229
Msa0506020 AT1G58260.1 44.444 216 117 1 6 218 34 249 3.82e-56 187
Msa0506020 AT1G79370.1 43.256 215 115 1 6 213 37 251 7.49e-52 176
Msa0506020 AT1G16410.2 35.945 217 131 2 1 209 32 248 1.97e-39 140
Msa0506020 AT1G16410.1 35.945 217 131 2 1 209 32 248 1.35e-38 140
Msa0506020 AT1G16400.1 36.111 216 130 2 2 209 32 247 2.34e-36 134
Msa0506020 AT5G07990.1 32.877 219 123 8 8 219 32 233 1.73e-23 98.2
Msa0506020 AT3G53300.1 31.548 168 105 3 4 167 23 184 1.19e-22 95.9
Msa0506020 AT1G13090.1 31.383 188 114 2 4 191 23 195 9.21e-21 88.6
Msa0506020 AT3G53280.1 31.034 174 109 3 4 172 23 190 1.42e-20 89.7
Msa0506020 AT1G13090.2 31.383 188 114 2 4 191 23 195 4.74e-20 88.2
Msa0506020 AT4G37370.1 31.336 217 133 7 6 215 27 234 5.84e-20 88.2
Msa0506020 AT3G26190.1 29.070 172 113 2 4 172 23 188 1.07e-19 87.4
Msa0506020 AT4G12320.1 28.037 214 146 3 6 219 39 244 3.73e-19 85.9
Msa0506020 AT4G12300.1 29.091 220 136 6 6 219 39 244 3.50e-18 82.8
Msa0506020 AT3G44250.1 27.928 222 134 6 4 216 23 227 3.76e-18 82.8
Msa0506020 AT5G67310.1 27.876 226 140 9 3 220 36 246 4.78e-18 82.4
Msa0506020 AT4G37320.1 29.444 180 122 4 3 179 25 202 6.03e-18 82.0
Msa0506020 AT5G25120.1 27.315 216 139 7 5 216 25 226 9.20e-18 81.6
Msa0506020 AT1G01280.1 28.571 168 118 1 49 216 69 234 2.03e-17 80.9
Msa0506020 AT3G26200.1 30.000 170 116 2 3 172 22 188 2.65e-17 80.5
Msa0506020 AT4G37340.1 30.047 213 135 7 6 212 27 231 2.73e-17 80.5
Msa0506020 AT5G10610.1 24.880 209 144 5 8 213 31 229 4.48e-17 79.7
Msa0506020 AT5G42590.1 27.907 215 137 6 1 212 25 224 5.50e-17 79.3
Msa0506020 AT4G15330.1 30.357 168 105 3 6 166 31 193 9.57e-17 79.0
Msa0506020 AT5G25130.1 26.852 216 140 6 5 216 25 226 1.13e-16 78.6
Msa0506020 AT1G13110.1 35.294 136 79 3 4 136 27 156 1.26e-16 78.6
Msa0506020 AT4G20240.2 34.884 129 81 2 3 131 27 152 1.33e-16 78.2
Msa0506020 AT3G26280.2 31.818 132 81 2 5 133 45 170 1.86e-16 77.8
Msa0506020 AT3G26280.1 31.818 132 81 2 5 133 28 153 1.94e-16 77.8
Msa0506020 AT4G20240.1 34.884 129 81 2 3 131 27 152 2.00e-16 77.8
Msa0506020 AT2G23190.1 27.570 214 143 7 5 213 71 277 2.23e-16 77.8
Msa0506020 AT4G13770.1 28.488 172 115 2 8 176 29 195 3.35e-16 77.0
Msa0506020 AT4G31500.1 27.168 173 122 2 8 178 28 198 4.36e-16 76.6
Msa0506020 AT3G53305.1 27.160 162 112 2 49 210 3 158 5.12e-16 75.9
Msa0506020 AT5G25140.1 25.701 214 142 5 2 212 22 221 5.21e-16 76.6
Msa0506020 AT5G25180.1 25.463 216 149 6 2 216 22 226 5.41e-16 76.6
Msa0506020 AT5G10600.1 25.962 208 147 5 7 213 44 245 1.22e-15 75.5
Msa0506020 AT4G37430.1 25.221 226 146 7 2 215 21 235 2.51e-15 74.7
Msa0506020 AT3G26330.1 25.373 201 140 4 10 210 32 222 2.66e-15 74.7
Msa0506020 AT3G20140.1 35.252 139 73 5 9 141 42 169 4.93e-15 73.9
Msa0506020 AT3G52970.1 24.201 219 143 5 6 216 33 236 5.77e-15 73.6
Msa0506020 AT3G52970.2 24.123 228 146 7 6 216 33 250 6.54e-15 73.6
Msa0506020 AT5G24950.1 24.651 215 143 5 6 216 29 228 6.66e-15 73.6
Msa0506020 AT3G26320.1 25.822 213 124 6 10 210 32 222 6.69e-15 73.6
Msa0506020 AT3G26180.1 23.721 215 149 4 9 220 30 232 6.70e-15 73.6
Msa0506020 AT5G24960.1 24.651 215 143 5 6 216 30 229 9.38e-15 72.8
Msa0506020 AT5G24960.2 24.651 215 143 5 6 216 30 229 1.12e-14 72.4
Msa0506020 AT1G11610.1 24.424 217 147 5 3 216 27 229 1.14e-14 72.8
Msa0506020 AT1G11610.2 24.424 217 147 5 3 216 27 229 1.39e-14 72.4
Msa0506020 AT3G26160.1 34.188 117 68 2 9 122 30 140 1.87e-14 72.0
Msa0506020 AT2G40890.1 25.116 215 145 4 8 215 26 231 2.85e-14 71.6
Msa0506020 AT3G26830.1 28.931 159 110 1 4 162 23 178 3.68e-14 71.2
Msa0506020 AT3G48280.1 32.847 137 83 2 3 136 24 154 4.33e-14 70.9
Msa0506020 AT3G26150.1 30.370 135 85 2 5 136 26 154 4.46e-14 70.9
Msa0506020 AT4G37310.1 24.775 222 153 7 1 216 23 236 5.62e-14 70.9
Msa0506020 AT5G06905.1 25.114 219 150 5 1 217 23 229 6.68e-14 70.5
Msa0506020 AT5G57260.1 26.471 204 134 5 10 210 31 221 6.83e-14 70.5
Msa0506020 AT2G23220.1 26.415 212 148 7 5 213 42 248 7.74e-14 70.1
Msa0506020 AT5G04330.1 33.628 113 72 2 10 122 33 142 8.98e-14 70.1
Msa0506020 AT3G26300.1 25.346 217 145 5 5 217 27 230 9.96e-14 70.1
Msa0506020 AT4G37360.1 28.095 210 143 6 6 212 27 231 1.27e-13 69.7
Msa0506020 AT4G13290.1 26.364 220 143 6 2 216 26 231 1.41e-13 69.3
Msa0506020 AT3G26270.1 30.000 130 82 2 5 131 28 151 1.48e-13 69.3
Msa0506020 AT2G30750.1 30.657 137 86 3 3 136 27 157 1.94e-13 68.9
Msa0506020 AT1G13080.1 32.653 147 86 4 5 148 27 163 3.86e-13 68.2
Msa0506020 AT3G26170.1 22.831 219 154 4 5 220 26 232 3.97e-13 68.2
Msa0506020 AT5G06900.1 25.581 215 144 5 9 219 34 236 4.18e-13 68.2
Msa0506020 AT3G28740.1 27.570 214 145 7 4 213 34 241 4.55e-13 68.2
Msa0506020 AT2G30770.1 29.630 135 86 3 5 136 29 157 6.21e-13 67.8
Msa0506020 AT3G48290.1 28.652 178 114 5 2 175 26 194 9.08e-13 67.0
Msa0506020 AT3G48290.2 28.652 178 114 5 2 175 26 194 1.06e-12 67.0
Msa0506020 AT3G26310.1 23.585 212 128 4 11 210 32 221 1.71e-12 66.2
Msa0506020 AT4G13310.1 24.883 213 141 7 9 216 32 230 1.97e-12 66.2
Msa0506020 AT4G13310.2 24.883 213 141 7 9 216 32 230 2.00e-12 65.9
Msa0506020 AT4G37330.1 29.255 188 114 8 3 180 25 203 2.07e-12 66.2
Msa0506020 AT2G24180.1 25.604 207 134 7 9 210 36 227 2.11e-12 66.2
Msa0506020 AT5G35715.1 25.000 124 93 0 49 172 3 126 2.61e-12 65.9
Msa0506020 AT3G26210.1 28.082 146 93 1 46 191 65 198 2.80e-12 65.9
Msa0506020 AT1G13100.1 35.227 88 57 0 49 136 62 149 3.47e-12 65.5
Msa0506020 AT3G48320.1 26.168 214 136 5 6 216 29 223 1.12e-11 63.9
Msa0506020 AT3G20080.2 32.168 143 81 5 4 138 33 167 1.61e-11 63.5
Msa0506020 AT3G20080.1 32.168 143 81 5 4 138 33 167 1.61e-11 63.5
Msa0506020 AT4G15360.1 26.946 167 114 2 9 172 40 201 1.66e-11 63.5
Msa0506020 AT3G48310.1 31.343 134 83 2 6 136 29 156 1.91e-11 63.2
Msa0506020 AT3G26220.1 24.118 170 120 2 5 171 25 188 2.39e-11 62.8
Msa0506020 AT3G48270.1 31.783 129 79 2 11 136 33 155 2.94e-11 62.8
Msa0506020 AT3G48300.1 28.230 209 128 7 11 216 31 220 3.04e-11 62.8
Msa0506020 AT3G48300.2 28.230 209 128 7 11 216 33 222 3.04e-11 62.8
Msa0506020 AT2G05180.1 34.343 99 62 1 36 131 63 161 3.18e-11 62.4
Msa0506020 AT4G37410.1 23.502 217 156 6 2 215 23 232 5.22e-11 62.0
Msa0506020 AT3G20110.1 31.343 134 80 4 9 138 39 164 9.15e-11 61.2
Msa0506020 AT3G20130.1 25.373 134 97 1 36 166 64 197 9.71e-11 61.2

Find 53 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTGTTTGCAAGCATTTC+AGG 0.232153 3_4:-52235867 None:intergenic
ATCAATGGCTTCAAGATAAA+AGG 0.254882 3_4:+52236162 Msa0506020:CDS
ATTTCACTAGCTAGGCTTAT+TGG 0.278371 3_4:-52236038 None:intergenic
GCAATGGAGGGACAAGTAAC+AGG 0.334653 3_4:-52235972 None:intergenic
GACTTAGATGCATGGTCATA+AGG 0.379157 3_4:+52236446 Msa0506020:CDS
CTGATTATATCCCATGCTTA+AGG 0.385276 3_4:+52236417 Msa0506020:CDS
GGATGGAGGGCCTGGTCTTA+AGG 0.386643 3_4:+52236334 Msa0506020:CDS
ACCAACTATAGGCAATGGTT+TGG 0.432042 3_4:-52235838 None:intergenic
CCAACTATAGGCAATGGTTT+GGG 0.432686 3_4:-52235837 None:intergenic
AATACAAGGTACTTTGGAAA+AGG 0.435545 3_4:+52236305 Msa0506020:CDS
TCAGGAAGATTACCAACTAT+AGG 0.436534 3_4:-52235849 None:intergenic
CACATAAAACATAAGATTGT+CGG 0.438363 3_4:-52236195 None:intergenic
ATAGGCAATGGTTTGGGACC+AGG 0.446943 3_4:-52235831 None:intergenic
TTGTGTATCCACCTAGCTGC+AGG 0.449285 3_4:-52235888 None:intergenic
TCTCTCCACACAGGCATCAA+TGG 0.449375 3_4:+52236147 Msa0506020:CDS
TCTCAAGAATTCACGGGCAA+TGG 0.468248 3_4:-52235988 None:intergenic
GCTAGTGAAATCATCTCAAA+TGG 0.469957 3_4:+52236050 Msa0506020:CDS
GGTATGAAGGATGGAGGGCC+TGG 0.474805 3_4:+52236326 Msa0506020:CDS
ACTTAGATGCATGGTCATAA+GGG 0.485663 3_4:+52236447 Msa0506020:CDS
CCCAAACCATTGCCTATAGT+TGG 0.486285 3_4:+52235837 Msa0506020:CDS
ACCTCAATTCTTGTACCCTA+TGG 0.492138 3_4:+52236080 Msa0506020:CDS
TTGAGATGATTTCACTAGCT+AGG 0.511912 3_4:-52236046 None:intergenic
ATGGTGGCCTTGTCAATGTA+AGG 0.517075 3_4:+52236234 Msa0506020:CDS
CAAGAATTCACGGGCAATGG+AGG 0.521971 3_4:-52235985 None:intergenic
TTTGGAAAAGGTATGAAGGA+TGG 0.527712 3_4:+52236317 Msa0506020:CDS
GAAATAGCGCGTATCCGCCT+AGG 0.530309 3_4:+52235933 Msa0506020:CDS
TAGGCAATGGTTTGGGACCA+GGG 0.535787 3_4:-52235830 None:intergenic
GTACTTTGGAAAAGGTATGA+AGG 0.540038 3_4:+52236313 Msa0506020:CDS
AAGTCAAGTAACCTTAAGCA+TGG 0.541430 3_4:-52236428 None:intergenic
GGATAACATGGACATTTCCT+AGG 0.543053 3_4:-52235950 None:intergenic
TAGGTGGATACACAAGACTA+TGG 0.562046 3_4:+52235896 Msa0506020:CDS
GACAAGTAACAGGGATAACA+TGG 0.567850 3_4:-52235962 None:intergenic
ATTGCTACTCAACATTATTG+TGG 0.576812 3_4:+52236257 Msa0506020:CDS
GCCATAGGGTACAAGAATTG+AGG 0.578397 3_4:-52236081 None:intergenic
AGATTACCAACTATAGGCAA+TGG 0.578490 3_4:-52235843 None:intergenic
CAATGGAGGGACAAGTAACA+GGG 0.579220 3_4:-52235971 None:intergenic
AAGAATTCACGGGCAATGGA+GGG 0.587985 3_4:-52235984 None:intergenic
AGGCAATGGTTTGGGACCAG+GGG 0.589217 3_4:-52235829 None:intergenic
GGAAAAGGTATGAAGGATGG+AGG 0.601161 3_4:+52236320 Msa0506020:CDS
TTGCAAACAAACCTGCAGCT+AGG 0.602841 3_4:+52235877 Msa0506020:CDS
TTGTACCCTATGGCGAACAA+TGG 0.607756 3_4:+52236090 Msa0506020:CDS
GGTTACTTGACTTAGATGCA+TGG 0.608260 3_4:+52236438 Msa0506020:CDS
AGTCAAGTAACCTTAAGCAT+GGG 0.611654 3_4:-52236427 None:intergenic
TGTTCAACTTCCTTAAGACC+AGG 0.619973 3_4:-52236344 None:intergenic
AAGATTTGTTCTCTCCACAC+AGG 0.621068 3_4:+52236138 Msa0506020:CDS
CAAACAAACCTGCAGCTAGG+TGG 0.631866 3_4:+52235880 Msa0506020:CDS
GAAAAGGTATGAAGGATGGA+GGG 0.635374 3_4:+52236321 Msa0506020:CDS
GTGTACAACAAATGTAACAA+TGG 0.640902 3_4:+52236215 Msa0506020:CDS
GGCAATGGTTTGGGACCAGG+GGG 0.644821 3_4:-52235828 None:intergenic
TAGCAATCCTTACATTGACA+AGG 0.660229 3_4:-52236241 None:intergenic
TGAAGCCATTGATGCCTGTG+TGG 0.690414 3_4:-52236152 None:intergenic
TACAACAAATGTAACAATGG+TGG 0.693075 3_4:+52236218 Msa0506020:CDS
TAACATGGACATTTCCTAGG+CGG 0.727704 3_4:-52235947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAACTATTTTTCAATACA+AGG + chr3_4:52236291-52236310 Msa0506020:CDS 20.0%
! CACATAAAACATAAGATTGT+CGG - chr3_4:52236198-52236217 None:intergenic 25.0%
!!! TTTTTCAATACAAGGTACTT+TGG + chr3_4:52236299-52236318 Msa0506020:CDS 25.0%
! ATGTTTTCTCAAGAATTCAC+GGG - chr3_4:52235997-52236016 None:intergenic 30.0%
! CATGTTTTCTCAAGAATTCA+CGG - chr3_4:52235998-52236017 None:intergenic 30.0%
ATCAATGGCTTCAAGATAAA+AGG + chr3_4:52236162-52236181 Msa0506020:CDS 30.0%
GTGTACAACAAATGTAACAA+TGG + chr3_4:52236215-52236234 Msa0506020:CDS 30.0%
TACAACAAATGTAACAATGG+TGG + chr3_4:52236218-52236237 Msa0506020:CDS 30.0%
ATTGCTACTCAACATTATTG+TGG + chr3_4:52236257-52236276 Msa0506020:CDS 30.0%
! AATACAAGGTACTTTGGAAA+AGG + chr3_4:52236305-52236324 Msa0506020:CDS 30.0%
AGATTACCAACTATAGGCAA+TGG - chr3_4:52235846-52235865 None:intergenic 35.0%
TCAGGAAGATTACCAACTAT+AGG - chr3_4:52235852-52235871 None:intergenic 35.0%
ATTTCACTAGCTAGGCTTAT+TGG - chr3_4:52236041-52236060 None:intergenic 35.0%
TTGAGATGATTTCACTAGCT+AGG - chr3_4:52236049-52236068 None:intergenic 35.0%
GCTAGTGAAATCATCTCAAA+TGG + chr3_4:52236050-52236069 Msa0506020:CDS 35.0%
! TTTTTCCATTGTTCGCCATA+GGG - chr3_4:52236098-52236117 None:intergenic 35.0%
TAGCAATCCTTACATTGACA+AGG - chr3_4:52236244-52236263 None:intergenic 35.0%
! GTACTTTGGAAAAGGTATGA+AGG + chr3_4:52236313-52236332 Msa0506020:CDS 35.0%
! TTTGGAAAAGGTATGAAGGA+TGG + chr3_4:52236317-52236336 Msa0506020:CDS 35.0%
CTGATTATATCCCATGCTTA+AGG + chr3_4:52236417-52236436 Msa0506020:CDS 35.0%
AGTCAAGTAACCTTAAGCAT+GGG - chr3_4:52236430-52236449 None:intergenic 35.0%
AAGTCAAGTAACCTTAAGCA+TGG - chr3_4:52236431-52236450 None:intergenic 35.0%
CCAACTATAGGCAATGGTTT+GGG - chr3_4:52235840-52235859 None:intergenic 40.0%
ACCAACTATAGGCAATGGTT+TGG - chr3_4:52235841-52235860 None:intergenic 40.0%
! GGTTTGTTTGCAAGCATTTC+AGG - chr3_4:52235870-52235889 None:intergenic 40.0%
TAGGTGGATACACAAGACTA+TGG + chr3_4:52235896-52235915 Msa0506020:CDS 40.0%
TAACATGGACATTTCCTAGG+CGG - chr3_4:52235950-52235969 None:intergenic 40.0%
GGATAACATGGACATTTCCT+AGG - chr3_4:52235953-52235972 None:intergenic 40.0%
GACAAGTAACAGGGATAACA+TGG - chr3_4:52235965-52235984 None:intergenic 40.0%
ACCTCAATTCTTGTACCCTA+TGG + chr3_4:52236080-52236099 Msa0506020:CDS 40.0%
! CTTTTTCCATTGTTCGCCAT+AGG - chr3_4:52236099-52236118 None:intergenic 40.0%
! AAGATTTGTTCTCTCCACAC+AGG + chr3_4:52236138-52236157 Msa0506020:CDS 40.0%
! GAAAAGGTATGAAGGATGGA+GGG + chr3_4:52236321-52236340 Msa0506020:CDS 40.0%
TGTTCAACTTCCTTAAGACC+AGG - chr3_4:52236347-52236366 None:intergenic 40.0%
GGTTACTTGACTTAGATGCA+TGG + chr3_4:52236438-52236457 Msa0506020:CDS 40.0%
! GGGGGAAGTTTAGGTTTGTT+AGG - chr3_4:52235813-52235832 None:intergenic 45.0%
AACAAACCTAAACTTCCCCC+TGG + chr3_4:52235813-52235832 Msa0506020:CDS 45.0%
CCCAAACCATTGCCTATAGT+TGG + chr3_4:52235837-52235856 Msa0506020:CDS 45.0%
TTGCAAACAAACCTGCAGCT+AGG + chr3_4:52235877-52235896 Msa0506020:CDS 45.0%
CAATGGAGGGACAAGTAACA+GGG - chr3_4:52235974-52235993 None:intergenic 45.0%
AAGAATTCACGGGCAATGGA+GGG - chr3_4:52235987-52236006 None:intergenic 45.0%
TCTCAAGAATTCACGGGCAA+TGG - chr3_4:52235991-52236010 None:intergenic 45.0%
GCCATAGGGTACAAGAATTG+AGG - chr3_4:52236084-52236103 None:intergenic 45.0%
TTGTACCCTATGGCGAACAA+TGG + chr3_4:52236090-52236109 Msa0506020:CDS 45.0%
!! ATGGTGGCCTTGTCAATGTA+AGG + chr3_4:52236234-52236253 Msa0506020:CDS 45.0%
! GGAAAAGGTATGAAGGATGG+AGG + chr3_4:52236320-52236339 Msa0506020:CDS 45.0%
! TAGGCAATGGTTTGGGACCA+GGG - chr3_4:52235833-52235852 None:intergenic 50.0%
! ATAGGCAATGGTTTGGGACC+AGG - chr3_4:52235834-52235853 None:intergenic 50.0%
CAAACAAACCTGCAGCTAGG+TGG + chr3_4:52235880-52235899 Msa0506020:CDS 50.0%
TTGTGTATCCACCTAGCTGC+AGG - chr3_4:52235891-52235910 None:intergenic 50.0%
GCAATGGAGGGACAAGTAAC+AGG - chr3_4:52235975-52235994 None:intergenic 50.0%
CAAGAATTCACGGGCAATGG+AGG - chr3_4:52235988-52236007 None:intergenic 50.0%
TCTCTCCACACAGGCATCAA+TGG + chr3_4:52236147-52236166 Msa0506020:CDS 50.0%
TGAAGCCATTGATGCCTGTG+TGG - chr3_4:52236155-52236174 None:intergenic 50.0%
TTGGGACCAGGGGGAAGTTT+AGG - chr3_4:52235822-52235841 None:intergenic 55.0%
! AGGCAATGGTTTGGGACCAG+GGG - chr3_4:52235832-52235851 None:intergenic 55.0%
GAAATAGCGCGTATCCGCCT+AGG + chr3_4:52235933-52235952 Msa0506020:CDS 55.0%
! GGCAATGGTTTGGGACCAGG+GGG - chr3_4:52235831-52235850 None:intergenic 60.0%
GGTATGAAGGATGGAGGGCC+TGG + chr3_4:52236326-52236345 Msa0506020:CDS 60.0%
!! GGATGGAGGGCCTGGTCTTA+AGG + chr3_4:52236334-52236353 Msa0506020:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 52235801 52236466 52235801 ID=Msa0506020;Name=Msa0506020
chr3_4 mRNA 52235801 52236466 52235801 ID=Msa0506020-mRNA-1;Parent=Msa0506020;Name=Msa0506020-mRNA-1;_AED=0.29;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|221
chr3_4 exon 52235801 52236466 52235801 ID=Msa0506020-mRNA-1:exon:11373;Parent=Msa0506020-mRNA-1
chr3_4 CDS 52235801 52236466 52235801 ID=Msa0506020-mRNA-1:cds;Parent=Msa0506020-mRNA-1
Gene Sequence

>Msa0506020

ATGTCATCACCTAACAAACCTAAACTTCCCCCTGGTCCCAAACCATTGCCTATAGTTGGTAATCTTCCTGAAATGCTTGCAAACAAACCTGCAGCTAGGTGGATACACAAGACTATGGAAGAATTGAACACTGAAATAGCGCGTATCCGCCTAGGAAATGTCCATGTTATCCCTGTTACTTGTCCCTCCATTGCCCGTGAATTCTTGAGAAAACATGATGCTGATTTTGCATCAAGACCAATAAGCCTAGCTAGTGAAATCATCTCAAATGGCTACATGACCTCAATTCTTGTACCCTATGGCGAACAATGGAAAAAGATGAAGAAAATTATTGTTAAAGATTTGTTCTCTCCACACAGGCATCAATGGCTTCAAGATAAAAGGAACGAAGAAGCCGACAATCTTATGTTTTATGTGTACAACAAATGTAACAATGGTGGCCTTGTCAATGTAAGGATTGCTACTCAACATTATTGTGGTAATGTGTATAGAAAACTATTTTTCAATACAAGGTACTTTGGAAAAGGTATGAAGGATGGAGGGCCTGGTCTTAAGGAAGTTGAACATGTTGATGCTGCTTTTGTATTGCTTAACTGTGTTTTAGCTTTCTCTGCATCTGATTATATCCCATGCTTAAGGTTACTTGACTTAGATGCATGGTCATAA
Protein sequence

>Msa0506020

MSSPNKPKLPPGPKPLPIVGNLPEMLANKPAARWIHKTMEELNTEIARIRLGNVHVIPVTCPSIAREFLRKHDADFASRPISLASEIISNGYMTSILVPYGEQWKKMKKIIVKDLFSPHRHQWLQDKRNEEADNLMFYVYNKCNNGGLVNVRIATQHYCGNVYRKLFFNTRYFGKGMKDGGPGLKEVEHVDAAFVLLNCVLAFSASDYIPCLRLLDLDAWS*