AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367990 MtrunA17_Chr3g0110311 95.290 276 13 0 1 276 1 276 0.0 517
Msa0367990 MtrunA17_Chr5g0434531 65.125 281 90 3 1 276 1 278 1.59e-121 348
Msa0367990 MtrunA17_Chr8g0391511 47.876 259 126 3 25 274 29 287 4.87e-84 253
Msa0367990 MtrunA17_Chr7g0230381 42.366 262 134 10 6 256 16 271 2.51e-57 184
Msa0367990 MtrunA17_Chr7g0262011 28.777 278 187 4 1 270 76 350 8.28e-33 123
Msa0367990 MtrunA17_Chr2g0323011 32.474 194 117 3 42 221 45 238 8.81e-25 99.4
Msa0367990 MtrunA17_Chr1g0168311 30.496 282 173 7 12 272 8 287 3.06e-24 99.0
Msa0367990 MtrunA17_Chr2g0322981 29.661 236 148 6 4 221 3 238 7.07e-24 97.1
Msa0367990 MtrunA17_Chr1g0186151 29.924 264 163 4 27 270 32 293 1.11e-23 98.2
Msa0367990 MtrunA17_Chr1g0190321 27.459 244 157 10 26 252 31 271 2.00e-23 96.7
Msa0367990 MtrunA17_Chr1g0206361 27.099 262 166 8 32 269 40 300 9.05e-20 89.0
Msa0367990 MtrunA17_Chr1g0205771 24.800 250 167 4 41 271 56 303 1.13e-19 88.6
Msa0367990 MtrunA17_Chr1g0206331 28.980 245 144 9 5 223 8 248 1.54e-19 88.2
Msa0367990 MtrunA17_Chr8g0354351 23.077 286 192 6 7 268 9 290 7.30e-19 86.3
Msa0367990 MtrunA17_Chr7g0234231 27.461 193 124 3 44 222 42 232 4.28e-18 81.6
Msa0367990 MtrunA17_Chr6g0474811 29.339 242 142 7 7 222 8 246 8.51e-18 83.2
Msa0367990 MtrunA17_Chr1g0206351 29.302 215 132 4 27 221 33 247 9.61e-18 82.8
Msa0367990 MtrunA17_Chr7g0226901 29.333 225 143 8 10 223 13 232 1.55e-17 80.1
Msa0367990 MtrunA17_Chr6g0474971 30.392 204 115 6 41 221 38 237 2.40e-17 80.1
Msa0367990 MtrunA17_Chr3g0081011 26.000 200 136 2 34 221 39 238 2.66e-17 81.6
Msa0367990 MtrunA17_Chr6g0475001 28.750 240 147 8 6 221 5 244 3.32e-17 81.3
Msa0367990 MtrunA17_Chr3g0081001 26.866 201 134 2 34 221 39 239 3.64e-17 81.3
Msa0367990 MtrunA17_Chr3g0081031 24.000 275 176 8 4 247 9 281 3.69e-17 81.3
Msa0367990 MtrunA17_Chr6g0474901 29.353 201 121 5 41 221 38 237 4.37e-17 81.3
Msa0367990 MtrunA17_Chr6g0474871 29.412 238 142 6 7 221 8 242 7.18e-17 80.5
Msa0367990 MtrunA17_Chr3g0081051 27.363 201 124 4 41 223 40 236 2.28e-16 76.6
Msa0367990 MtrunA17_Chr6g0475091 29.000 200 123 4 41 221 54 253 3.84e-16 78.2
Msa0367990 MtrunA17_Chr8g0354341 25.616 203 136 2 34 221 37 239 4.47e-16 76.3
Msa0367990 MtrunA17_Chr6g0475201 29.167 240 147 6 4 221 5 243 4.96e-16 77.8
Msa0367990 MtrunA17_Chr5g0428531 26.582 237 147 7 10 223 11 243 5.99e-16 76.3
Msa0367990 MtrunA17_Chr8g0354421 28.634 227 135 7 1 204 23 245 2.76e-15 75.5
Msa0367990 MtrunA17_Chr6g0474861 29.016 193 112 5 27 199 27 214 3.84e-15 75.1
Msa0367990 MtrunA17_Chr5g0428571 26.263 198 130 3 41 223 45 241 1.00e-14 73.9
Msa0367990 MtrunA17_Chr5g0428591 25.217 230 154 4 10 222 11 239 1.05e-14 72.4
Msa0367990 MtrunA17_Chr5g0394001 26.939 245 159 5 38 263 41 284 1.88e-14 73.2
Msa0367990 MtrunA17_Chr8g0354411 28.061 196 122 4 28 204 29 224 6.12e-14 70.5
Msa0367990 MtrunA17_Chr6g0475121 27.222 180 113 2 60 221 65 244 6.32e-14 71.6
Msa0367990 MtrunA17_Chr1g0206201 26.800 250 157 7 7 230 7 256 6.62e-14 70.1
Msa0367990 MtrunA17_Chr1g0206231 25.869 259 147 8 42 264 52 301 2.04e-13 70.1
Msa0367990 MtrunA17_Chr3g0082951 37.255 102 60 1 28 125 116 217 3.44e-13 67.4
Msa0367990 MtrunA17_Chr4g0058891 31.210 157 94 7 76 223 82 233 4.09e-13 69.3
Msa0367990 MtrunA17_Chr2g0280381 25.620 242 150 8 2 221 1 234 4.33e-13 67.8
Msa0367990 MtrunA17_Chr8g0354281 24.000 275 180 8 28 273 29 303 5.11e-13 68.9
Msa0367990 MtrunA17_Chr1g0154311 24.436 266 162 9 41 270 49 311 6.63e-13 68.6
Msa0367990 MtrunA17_Chr3g0109411 24.186 215 146 3 24 222 25 238 9.28e-13 68.2
Msa0367990 MtrunA17_Chr1g0206291 25.941 239 150 9 7 221 23 258 1.58e-12 67.4
Msa0367990 MtrunA17_Chr8g0354431 24.554 224 149 6 1 204 1 224 2.38e-12 67.0
Msa0367990 MtrunA17_Chr8g0347571 25.989 177 122 2 55 222 61 237 1.19e-11 65.1
Msa0367990 MtrunA17_Chr6g0475111 26.667 240 155 5 3 222 9 247 1.29e-11 64.7
Msa0367990 MtrunA17_Chr6g0475111 22.632 190 122 4 28 197 286 470 1.33e-11 64.7
Msa0367990 MtrunA17_Chr2g0280391 24.852 169 113 3 41 197 50 216 1.38e-11 63.5
Msa0367990 MtrunA17_Chr8g0354441 23.490 298 199 8 1 269 6 303 1.39e-11 64.7
Msa0367990 MtrunA17_Chr5g0393981 26.471 204 127 5 38 222 113 312 3.83e-11 63.2
Msa0367990 MtrunA17_Chr8g0354271 23.786 206 137 5 7 194 12 215 5.65e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367990 AT5G37660.1 59.364 283 105 5 1 276 9 288 1.06e-107 314
Msa0367990 AT5G37660.2 59.220 282 105 5 1 275 9 287 7.92e-107 312
Msa0367990 AT2G01660.3 53.633 289 119 10 1 276 1 287 2.94e-94 280
Msa0367990 AT2G01660.1 53.521 284 118 9 1 272 1 282 1.87e-93 278
Msa0367990 AT2G01660.2 54.435 248 98 8 1 238 1 243 3.14e-83 251
Msa0367990 AT1G70690.1 40.956 293 149 7 1 272 1 290 2.47e-68 214
Msa0367990 AT3G60720.3 39.442 251 138 6 28 268 29 275 9.47e-52 171
Msa0367990 AT3G60720.1 39.442 251 138 6 28 268 29 275 1.08e-51 171
Msa0367990 AT3G60720.2 40.865 208 113 4 28 225 29 236 6.87e-45 152
Msa0367990 AT5G43980.1 25.283 265 174 5 27 268 27 290 3.98e-21 91.3
Msa0367990 AT5G48540.1 30.052 193 119 3 45 221 43 235 4.49e-20 87.4
Msa0367990 AT1G04520.1 26.523 279 177 7 17 270 24 299 1.50e-19 86.7
Msa0367990 AT2G33330.1 27.402 281 183 7 10 270 17 296 3.70e-19 85.5
Msa0367990 AT3G22060.1 29.767 215 131 5 25 221 31 243 2.49e-18 82.4
Msa0367990 AT1G63550.1 27.876 226 133 6 19 224 31 246 2.62e-16 77.8
Msa0367990 AT1G63580.1 27.509 269 168 8 8 254 7 270 4.80e-16 76.6
Msa0367990 AT3G58310.1 28.692 237 144 9 8 222 16 249 5.41e-16 76.3
Msa0367990 AT4G20570.1 26.250 240 151 7 8 222 25 263 1.27e-15 75.5
Msa0367990 AT4G20560.1 26.250 240 151 7 8 222 25 263 1.27e-15 75.5
Msa0367990 AT4G20540.1 26.250 240 151 7 8 222 25 263 1.27e-15 75.5
Msa0367990 AT4G20645.1 26.250 240 151 7 8 222 25 263 1.27e-15 75.5
Msa0367990 AT4G20530.1 26.250 240 151 7 8 222 25 263 1.27e-15 75.5
Msa0367990 AT4G20550.1 26.250 240 151 7 8 222 25 263 1.27e-15 75.5
Msa0367990 AT1G61750.1 27.149 221 127 7 27 221 28 240 1.46e-15 75.9
Msa0367990 AT4G20640.1 26.250 240 151 7 8 222 11 249 1.51e-15 74.7
Msa0367990 AT4G20630.1 26.250 240 151 7 8 222 11 249 1.51e-15 74.7
Msa0367990 AT4G20580.1 26.250 240 151 7 8 222 11 249 1.51e-15 74.7
Msa0367990 AT4G20600.1 26.250 240 151 7 8 222 11 249 1.51e-15 74.7
Msa0367990 AT4G20620.1 26.250 240 151 7 8 222 11 249 1.51e-15 74.7
Msa0367990 AT4G20610.1 26.250 240 151 7 8 222 11 249 1.51e-15 74.7
Msa0367990 AT4G20590.1 26.250 240 151 7 8 222 11 249 1.51e-15 74.7
Msa0367990 AT4G20670.1 26.250 240 151 7 8 222 11 249 2.16e-15 74.7
Msa0367990 AT3G21990.1 25.207 242 151 8 8 222 11 249 2.99e-15 73.9
Msa0367990 AT1G63590.1 26.210 248 155 6 2 225 4 247 5.59e-15 73.6
Msa0367990 AT5G41300.1 21.724 290 197 5 1 263 1 287 6.14e-14 70.9
Msa0367990 AT3G22010.1 26.432 227 132 9 25 222 36 256 9.43e-14 70.1
Msa0367990 AT1G63600.1 27.317 205 124 4 39 221 50 251 1.38e-13 70.1
Msa0367990 AT4G05200.2 25.630 238 149 7 9 221 26 260 4.54e-13 69.3
Msa0367990 AT4G05200.1 25.630 238 149 7 9 221 8 242 4.89e-13 69.3
Msa0367990 AT5G41290.1 23.673 245 163 6 1 223 1 243 6.13e-13 67.8
Msa0367990 AT1G63570.3 28.372 215 132 6 29 223 29 241 1.25e-12 67.0
Msa0367990 AT1G63570.1 28.372 215 132 6 29 223 29 241 1.25e-12 67.0
Msa0367990 AT1G63570.2 28.372 215 132 6 29 223 82 294 1.38e-12 67.4
Msa0367990 AT3G21970.1 27.500 240 134 10 8 216 12 242 1.59e-11 63.5
Msa0367990 AT4G23130.1 28.061 196 122 5 42 221 46 238 1.90e-11 64.7
Msa0367990 AT4G23130.3 28.061 196 122 5 42 221 46 238 1.98e-11 64.3
Msa0367990 AT4G23130.2 28.061 196 122 5 42 221 46 238 2.05e-11 64.3
Msa0367990 AT4G23280.1 28.037 214 129 7 28 221 28 236 2.35e-11 64.3
Msa0367990 AT4G23280.3 28.037 214 129 7 28 221 28 236 2.57e-11 64.3
Msa0367990 AT4G23280.2 28.037 214 129 7 28 221 28 236 2.75e-11 63.9
Msa0367990 AT1G70530.3 26.484 219 126 8 67 263 67 272 7.99e-11 62.4
Msa0367990 AT1G70530.2 26.484 219 126 8 67 263 67 272 9.82e-11 62.4

Find 113 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAGAAAATTAGAATATT+TGG 0.128342 3_1:-64072868 None:intergenic
AAGACATTTGCCATAATTAT+TGG 0.167670 3_1:+64072347 Msa0367990:CDS
TGTAGGTTGCTGAGTTTATT+AGG 0.179076 3_1:-64071033 None:intergenic
CTCCATTGCAAATTTGCTTT+TGG 0.183335 3_1:+64072642 Msa0367990:three_prime_UTR
GATTGTCCTTCTGGGGATTA+TGG 0.218428 3_1:+64071484 Msa0367990:CDS
CGGGTTCAGGTGGGTTGTTT+AGG 0.228798 3_1:+64071356 Msa0367990:CDS
ATCAAAGTTTGTCAAACTTA+TGG 0.233696 3_1:+64072582 Msa0367990:three_prime_UTR
TTGAGAAATGATTGTCCTTC+TGG 0.234841 3_1:+64071475 Msa0367990:CDS
GACATCCATGTGAATATAAA+AGG 0.243532 3_1:+64072819 Msa0367990:three_prime_UTR
TTGTTTAGGGTTGGTGGTTC+GGG 0.272429 3_1:+64071370 Msa0367990:CDS
TTGGGTGGGTTGGCGGGTTC+AGG 0.279854 3_1:+64071343 Msa0367990:CDS
TGCTAATAATCCAATAATTA+TGG 0.281272 3_1:-64072357 None:intergenic
GGGTTCAGGTGGGTTGTTTA+GGG 0.285383 3_1:+64071357 Msa0367990:CDS
GGGATGTGAGGAGTGAGTTT+AGG 0.299474 3_1:-64071012 None:intergenic
TGGTATTTGAGAAGATAAAA+AGG 0.304797 3_1:-64072680 None:intergenic
GGTGGGTTGGCGGGTTCAGG+TGG 0.311303 3_1:+64071346 Msa0367990:CDS
GTTGTTTAGGGTTGGTGGTT+CGG 0.315244 3_1:+64071369 Msa0367990:CDS
ACTCTACTGGTGGTGCTGGT+GGG 0.348191 3_1:+64071539 Msa0367990:CDS
GACGATGTCGTTAGGGTTTG+AGG 0.353702 3_1:-64071083 None:intergenic
CTCTACTGGTGGTGCTGGTG+GGG 0.370242 3_1:+64071540 Msa0367990:CDS
GATTATGGAGATATATTCTT+GGG 0.377809 3_1:+64071499 Msa0367990:CDS
TTAGGTTGGATTCGTAGGTT+GGG 0.379852 3_1:-64070994 None:intergenic
TTTAGGTTGGATTCGTAGGT+TGG 0.384495 3_1:-64070995 None:intergenic
TACTCTACTGGTGGTGCTGG+TGG 0.391074 3_1:+64071538 Msa0367990:CDS
GGTGGGTTGTTTAGGGTTGG+TGG 0.391830 3_1:+64071364 Msa0367990:CDS
TGCTGTGTTGGGTGGGTTGG+CGG 0.395709 3_1:+64071336 Msa0367990:CDS
GCTGTGTTGGGTGGGTTGGC+GGG 0.402006 3_1:+64071337 Msa0367990:CDS
AGGCCGTAGACGATGTCGTT+AGG 0.405035 3_1:-64071091 None:intergenic
TGGTGGTTCGGGTCAGTTGA+AGG 0.409087 3_1:+64071381 Msa0367990:CDS
GTAGGTTGCTGAGTTTATTA+GGG 0.412170 3_1:-64071032 None:intergenic
TCAGGTGGGTTGTTTAGGGT+TGG 0.416015 3_1:+64071361 Msa0367990:CDS
TGAGAAATGATTGTCCTTCT+GGG 0.421310 3_1:+64071476 Msa0367990:CDS
TGAAAGTTGAGAAGATCAAG+AGG 0.435685 3_1:-64070904 None:intergenic
GGATTATGGAGATATATTCT+TGG 0.444911 3_1:+64071498 Msa0367990:CDS
TTGAGAAGCAAATTAAGAAA+TGG 0.449942 3_1:+64070859 Msa0367990:exon
TGTGAGGAGTGAGTTTAGGT+TGG 0.450370 3_1:-64071008 None:intergenic
CGCGTTGGTGACATATGTCC+TGG 0.451687 3_1:+64071178 Msa0367990:CDS
CCCGGGTCATACCCTACTTC+AGG 0.455161 3_1:-64071304 None:intergenic
AAGAAATGTGGGCCTGAAGT+AGG 0.455715 3_1:+64071292 Msa0367990:CDS
AGATGCTGTGTTGGGTGGGT+TGG 0.456176 3_1:+64071333 Msa0367990:CDS
GGCCGTAGACGATGTCGTTA+GGG 0.457634 3_1:-64071090 None:intergenic
TGAGTTTAGGTTGGATTCGT+AGG 0.468195 3_1:-64070999 None:intergenic
TTTGGCCTTACCATGAGGCT+TGG 0.468981 3_1:-64071575 None:intergenic
CAAATTTGCAATGGAGAAGA+AGG 0.472499 3_1:-64072635 None:intergenic
TGAGACGGCACGTGCAATGC+AGG 0.479239 3_1:-64071155 None:intergenic
GATGATGGTGAAGTTGTTGT+AGG 0.488958 3_1:-64071059 None:intergenic
TAGGTTGGATTCGTAGGTTG+GGG 0.494696 3_1:-64070993 None:intergenic
AACCCTAACGACATCGTCTA+CGG 0.495402 3_1:+64071088 Msa0367990:CDS
ACGATAGATGCTGTGTTGGG+TGG 0.499063 3_1:+64071328 Msa0367990:CDS
GCAATGCAGGAGGAGCAGTC+TGG 0.509242 3_1:-64071142 None:intergenic
TTCCAAAAGCAAATTTGCAA+TGG 0.509675 3_1:-64072644 None:intergenic
AGGTACTCTACTGGTGGTGC+TGG 0.511132 3_1:+64071535 Msa0367990:CDS
GAAGTTGTTGTAGGATGTGT+AGG 0.519106 3_1:-64071050 None:intergenic
GGTGGTTCGGGTCAGTTGAA+GGG 0.521698 3_1:+64071382 Msa0367990:CDS
CTGTGGGGATGGAAAATGAA+TGG 0.522591 3_1:-64070931 None:intergenic
ACAACTTTGTTGAGTGGGGA+AGG 0.522805 3_1:-64072891 None:intergenic
CTGAGTTTATTAGGGATGTG+AGG 0.524550 3_1:-64071024 None:intergenic
ATGTGAATATAAAAGGCAAA+AGG 0.530706 3_1:+64072826 Msa0367990:three_prime_UTR
AATAGCAATATAAGAAGAGA+GGG 0.531320 3_1:-64072721 None:intergenic
GGCGGCGTAGTGCAATTAGA+AGG 0.531543 3_1:+64071208 Msa0367990:CDS
GAGGAATGTGTCTGTGGGGA+TGG 0.535481 3_1:-64070942 None:intergenic
TGGAGATGTCGCCACGACAT+TGG 0.537747 3_1:-64071117 None:intergenic
AGAAATGTGGGCCTGAAGTA+GGG 0.540842 3_1:+64071293 Msa0367990:CDS
GACAATCATTTCTCAACCGT+CGG 0.542438 3_1:-64071468 None:intergenic
TATAAAAGGCAAAAGGAAAG+AGG 0.550930 3_1:+64072833 Msa0367990:three_prime_UTR
CGATAGATGCTGTGTTGGGT+GGG 0.551280 3_1:+64071329 Msa0367990:CDS
TGTTATGCAAGGTACTCTAC+TGG 0.554321 3_1:+64071526 Msa0367990:CDS
GTTAGGGTTTGAGGAGATGA+TGG 0.555268 3_1:-64071074 None:intergenic
GTGGGTTGGCGGGTTCAGGT+GGG 0.556632 3_1:+64071347 Msa0367990:CDS
ATATTCACATGGATGTCCAA+TGG 0.558742 3_1:-64072813 None:intergenic
TGTCGCCACGACATTGGTAG+AGG 0.562192 3_1:-64071111 None:intergenic
GGTACGATAGATGCTGTGTT+GGG 0.563981 3_1:+64071325 Msa0367990:CDS
AACACAGCATCTATCGTACC+CGG 0.565235 3_1:-64071322 None:intergenic
AAGGGAATGGCACAGTGTGT+TGG 0.569824 3_1:+64071400 Msa0367990:CDS
TTCTTGAGAAGGATTTGTGA+GGG 0.570265 3_1:+64072410 Msa0367990:CDS
GCAGGAGGAGCAGTCTGGCA+TGG 0.570950 3_1:-64071137 None:intergenic
CAACTTTGTTGAGTGGGGAA+GGG 0.572893 3_1:-64072890 None:intergenic
GTGTCAAGATTGTGTTTCAG+AGG 0.572991 3_1:+64071441 Msa0367990:CDS
TTCGGGTCAGTTGAAGGGAA+TGG 0.573592 3_1:+64071387 Msa0367990:CDS
AGAAGGATTTGTGAGGGACA+AGG 0.574299 3_1:+64072416 Msa0367990:CDS
GAGAAATGATTGTCCTTCTG+GGG 0.574534 3_1:+64071477 Msa0367990:CDS
CATGCTTACTCCAAGCCTCA+TGG 0.577319 3_1:+64071565 Msa0367990:CDS
CCGTAGAGGAATGTGTCTGT+GGG 0.581627 3_1:-64070947 None:intergenic
ACCGTAGAGGAATGTGTCTG+TGG 0.584034 3_1:-64070948 None:intergenic
GGGTACGATAGATGCTGTGT+TGG 0.588107 3_1:+64071324 Msa0367990:CDS
CCCACAGACACATTCCTCTA+CGG 0.588964 3_1:+64070947 Msa0367990:CDS
ACGATTGTGTTGAAGAAATG+TGG 0.594488 3_1:+64071280 Msa0367990:CDS
GCACGTGCCGTCTCACGCGT+TGG 0.594995 3_1:+64071163 Msa0367990:CDS
GCCTGAAGTAGGGTATGACC+CGG 0.597666 3_1:+64071303 Msa0367990:CDS
TATGTCACCAACGCGTGAGA+CGG 0.602566 3_1:-64071170 None:intergenic
AAATAGCAATATAAGAAGAG+AGG 0.603886 3_1:-64072722 None:intergenic
ACTACGCCGCCACACACGCC+AGG 0.607742 3_1:-64071196 None:intergenic
GAAAGTTGAGAAGATCAAGA+GGG 0.611900 3_1:-64070903 None:intergenic
GGCAAGAAAAGATAAGACAT+TGG 0.612310 3_1:-64072700 None:intergenic
CTTGTGTGCACCCACCGTAG+AGG 0.614149 3_1:-64070961 None:intergenic
TACGGCCTCTACCAATGTCG+TGG 0.618703 3_1:+64071106 Msa0367990:CDS
CGATTGTGTTGAAGAAATGT+GGG 0.626819 3_1:+64071281 Msa0367990:CDS
GACGGCACGTGCAATGCAGG+AGG 0.628710 3_1:-64071152 None:intergenic
GTGTTTCAGAGGCAATCCGA+CGG 0.633404 3_1:+64071452 Msa0367990:CDS
TCTTGGGGAAGTGTTATGCA+AGG 0.634593 3_1:+64071515 Msa0367990:CDS
ATATGTCCTGGCGTGTGTGG+CGG 0.634771 3_1:+64071190 Msa0367990:CDS
GACATATGTCCTGGCGTGTG+TGG 0.636110 3_1:+64071187 Msa0367990:CDS
ATTATGGAGATATATTCTTG+GGG 0.638260 3_1:+64071500 Msa0367990:CDS
CAGACACATTCCTCTACGGT+GGG 0.641339 3_1:+64070951 Msa0367990:CDS
TTTCTTGAGAAGGATTTGTG+AGG 0.642073 3_1:+64072409 Msa0367990:CDS
ACAGACACATTCCTCTACGG+TGG 0.643716 3_1:+64070950 Msa0367990:CDS
ATATCTCCATAATCCCCAGA+AGG 0.652492 3_1:-64071490 None:intergenic
TATGCAAGGTACTCTACTGG+TGG 0.668750 3_1:+64071529 Msa0367990:CDS
GAAGGCTGAGAATTGATCAG+TGG 0.681543 3_1:-64072617 None:intergenic
ACACAGCATCTATCGTACCC+GGG 0.696058 3_1:-64071321 None:intergenic
CGTAGAGGAATGTGTCTGTG+GGG 0.745210 3_1:-64070946 None:intergenic
CCTGAAGTAGGGTATGACCC+GGG 0.746476 3_1:+64071304 Msa0367990:CDS
GCAGGTAAATCAGATCACGA+TGG 0.755003 3_1:+64072320 Msa0367990:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTCTTTTAGTTTTAA+TGG - chr3_1:64071642-64071661 None:intergenic 10.0%
!!! CATTTTTTAATTTAAATTGA+TGG + chr3_1:64072045-64072064 Msa0367990:intron 10.0%
!! AGAAAATATTAAAACAAATA+TGG - chr3_1:64072543-64072562 None:intergenic 10.0%
!!! AAATATTCTTTTAGTTTTAA+TGG - chr3_1:64071642-64071661 None:intergenic 10.0%
!!! CATTTTTTAATTTAAATTGA+TGG + chr3_1:64072045-64072064 Msa0367990:intron 10.0%
!! AGAAAATATTAAAACAAATA+TGG - chr3_1:64072543-64072562 None:intergenic 10.0%
!!! GGGAAAAATAATAATAATTT+TGG - chr3_1:64071596-64071615 None:intergenic 15.0%
!!! AAAACTAAAAGAATATTTTG+TGG + chr3_1:64071644-64071663 Msa0367990:intron 15.0%
!! GTTAAGAAAATTAGAATATT+TGG - chr3_1:64072871-64072890 None:intergenic 15.0%
!!! GGGAAAAATAATAATAATTT+TGG - chr3_1:64071596-64071615 None:intergenic 15.0%
!!! AAAACTAAAAGAATATTTTG+TGG + chr3_1:64071644-64071663 Msa0367990:intron 15.0%
!! GTTAAGAAAATTAGAATATT+TGG - chr3_1:64072871-64072890 None:intergenic 15.0%
!!! TATGACAATGTTAAGTTTTT+AGG + chr3_1:64071244-64071263 Msa0367990:CDS 20.0%
!! ATTCTTCAAAAAACCATATT+AGG - chr3_1:64071680-64071699 None:intergenic 20.0%
!!! TTTTTGTGTTTAATGTTGTT+TGG + chr3_1:64071699-64071718 Msa0367990:intron 20.0%
!!! TTTTGTGTTTAATGTTGTTT+GGG + chr3_1:64071700-64071719 Msa0367990:intron 20.0%
!! AATCTATGAATATCTATTTG+TGG + chr3_1:64071772-64071791 Msa0367990:intron 20.0%
!! TAGAAAAGAATGTAAATATG+AGG + chr3_1:64071826-64071845 Msa0367990:intron 20.0%
!!! AATACATGTGATTTTTTCAA+AGG + chr3_1:64072101-64072120 Msa0367990:intron 20.0%
!!! GCTAATTTATTTGATTCTTT+TGG + chr3_1:64072286-64072305 Msa0367990:intron 20.0%
!! TGCTAATAATCCAATAATTA+TGG - chr3_1:64072360-64072379 None:intergenic 20.0%
!!! TATGACAATGTTAAGTTTTT+AGG + chr3_1:64071244-64071263 Msa0367990:CDS 20.0%
!! ATTCTTCAAAAAACCATATT+AGG - chr3_1:64071680-64071699 None:intergenic 20.0%
!!! TTTTTGTGTTTAATGTTGTT+TGG + chr3_1:64071699-64071718 Msa0367990:intron 20.0%
!!! TTTTGTGTTTAATGTTGTTT+GGG + chr3_1:64071700-64071719 Msa0367990:intron 20.0%
!! AATCTATGAATATCTATTTG+TGG + chr3_1:64071772-64071791 Msa0367990:intron 20.0%
!! TAGAAAAGAATGTAAATATG+AGG + chr3_1:64071826-64071845 Msa0367990:intron 20.0%
!!! AATACATGTGATTTTTTCAA+AGG + chr3_1:64072101-64072120 Msa0367990:intron 20.0%
!!! GCTAATTTATTTGATTCTTT+TGG + chr3_1:64072286-64072305 Msa0367990:intron 20.0%
!! TGCTAATAATCCAATAATTA+TGG - chr3_1:64072360-64072379 None:intergenic 20.0%
! TTGAGAAGCAAATTAAGAAA+TGG + chr3_1:64070859-64070878 Msa0367990:exon 25.0%
! GATTATGGAGATATATTCTT+GGG + chr3_1:64071499-64071518 Msa0367990:CDS 25.0%
! ATTATGGAGATATATTCTTG+GGG + chr3_1:64071500-64071519 Msa0367990:CDS 25.0%
!!! TATATTTAACGTAGCTTTAG+GGG - chr3_1:64071616-64071635 None:intergenic 25.0%
!! GTATATTTAACGTAGCTTTA+GGG - chr3_1:64071617-64071636 None:intergenic 25.0%
! AGTATATTTAACGTAGCTTT+AGG - chr3_1:64071618-64071637 None:intergenic 25.0%
! TTTGTAATGTGATACAAGAT+AGG - chr3_1:64072071-64072090 None:intergenic 25.0%
! AAGACATTTGCCATAATTAT+TGG + chr3_1:64072347-64072366 Msa0367990:CDS 25.0%
!!! TTTTTTTTGCTTTCTTGAGA+AGG + chr3_1:64072399-64072418 Msa0367990:CDS 25.0%
! AAAAATAAAGATTGAGAGAG+AGG - chr3_1:64072463-64072482 None:intergenic 25.0%
!!! GTTTTAATATTTTCTGATGC+AGG + chr3_1:64072548-64072567 Msa0367990:intron 25.0%
! ATCAAAGTTTGTCAAACTTA+TGG + chr3_1:64072582-64072601 Msa0367990:three_prime_UTR 25.0%
! TGGTATTTGAGAAGATAAAA+AGG - chr3_1:64072683-64072702 None:intergenic 25.0%
! AATAGCAATATAAGAAGAGA+GGG - chr3_1:64072724-64072743 None:intergenic 25.0%
! AAATAGCAATATAAGAAGAG+AGG - chr3_1:64072725-64072744 None:intergenic 25.0%
!! TTTTGCCTTTTATATTCACA+TGG - chr3_1:64072827-64072846 None:intergenic 25.0%
! ATGTGAATATAAAAGGCAAA+AGG + chr3_1:64072826-64072845 Msa0367990:three_prime_UTR 25.0%
! TTGAGAAGCAAATTAAGAAA+TGG + chr3_1:64070859-64070878 Msa0367990:exon 25.0%
! GATTATGGAGATATATTCTT+GGG + chr3_1:64071499-64071518 Msa0367990:CDS 25.0%
! ATTATGGAGATATATTCTTG+GGG + chr3_1:64071500-64071519 Msa0367990:CDS 25.0%
!!! TATATTTAACGTAGCTTTAG+GGG - chr3_1:64071616-64071635 None:intergenic 25.0%
!! GTATATTTAACGTAGCTTTA+GGG - chr3_1:64071617-64071636 None:intergenic 25.0%
! AGTATATTTAACGTAGCTTT+AGG - chr3_1:64071618-64071637 None:intergenic 25.0%
! TTTGTAATGTGATACAAGAT+AGG - chr3_1:64072071-64072090 None:intergenic 25.0%
! AAGACATTTGCCATAATTAT+TGG + chr3_1:64072347-64072366 Msa0367990:CDS 25.0%
!!! TTTTTTTTGCTTTCTTGAGA+AGG + chr3_1:64072399-64072418 Msa0367990:CDS 25.0%
! AAAAATAAAGATTGAGAGAG+AGG - chr3_1:64072463-64072482 None:intergenic 25.0%
!!! GTTTTAATATTTTCTGATGC+AGG + chr3_1:64072548-64072567 Msa0367990:intron 25.0%
! ATCAAAGTTTGTCAAACTTA+TGG + chr3_1:64072582-64072601 Msa0367990:three_prime_UTR 25.0%
! TGGTATTTGAGAAGATAAAA+AGG - chr3_1:64072683-64072702 None:intergenic 25.0%
! AATAGCAATATAAGAAGAGA+GGG - chr3_1:64072724-64072743 None:intergenic 25.0%
! AAATAGCAATATAAGAAGAG+AGG - chr3_1:64072725-64072744 None:intergenic 25.0%
!! TTTTGCCTTTTATATTCACA+TGG - chr3_1:64072827-64072846 None:intergenic 25.0%
! ATGTGAATATAAAAGGCAAA+AGG + chr3_1:64072826-64072845 Msa0367990:three_prime_UTR 25.0%
! CTCAATATGTGAATGTTTTG+TGG - chr3_1:64070844-64070863 None:intergenic 30.0%
!! CAATGTTAAGTTTTTAGGCA+TGG + chr3_1:64071249-64071268 Msa0367990:CDS 30.0%
GGATTATGGAGATATATTCT+TGG + chr3_1:64071498-64071517 Msa0367990:CDS 30.0%
!! TTTAGGTTGCTCTATCTTTA+GGG + chr3_1:64071864-64071883 Msa0367990:intron 30.0%
GAAAAGGCAAAGATAACTTA+AGG + chr3_1:64072191-64072210 Msa0367990:intron 30.0%
TTGAGAAAAGCAATAGAAAG+TGG + chr3_1:64072226-64072245 Msa0367990:intron 30.0%
TGAGAAAAGCAATAGAAAGT+GGG + chr3_1:64072227-64072246 Msa0367990:intron 30.0%
!! TATTTGATTCTTTTGGTGAC+TGG + chr3_1:64072293-64072312 Msa0367990:intron 30.0%
GAGAGAGGAAATTAAAAATG+TGG - chr3_1:64072448-64072467 None:intergenic 30.0%
TTCCAAAAGCAAATTTGCAA+TGG - chr3_1:64072647-64072666 None:intergenic 30.0%
ATTAGAAAAAGATGCACCAT+TGG + chr3_1:64072797-64072816 Msa0367990:three_prime_UTR 30.0%
GACATCCATGTGAATATAAA+AGG + chr3_1:64072819-64072838 Msa0367990:three_prime_UTR 30.0%
TATAAAAGGCAAAAGGAAAG+AGG + chr3_1:64072833-64072852 Msa0367990:three_prime_UTR 30.0%
! CTCAATATGTGAATGTTTTG+TGG - chr3_1:64070844-64070863 None:intergenic 30.0%
!! CAATGTTAAGTTTTTAGGCA+TGG + chr3_1:64071249-64071268 Msa0367990:CDS 30.0%
GGATTATGGAGATATATTCT+TGG + chr3_1:64071498-64071517 Msa0367990:CDS 30.0%
!! TTTAGGTTGCTCTATCTTTA+GGG + chr3_1:64071864-64071883 Msa0367990:intron 30.0%
GAAAAGGCAAAGATAACTTA+AGG + chr3_1:64072191-64072210 Msa0367990:intron 30.0%
TTGAGAAAAGCAATAGAAAG+TGG + chr3_1:64072226-64072245 Msa0367990:intron 30.0%
TGAGAAAAGCAATAGAAAGT+GGG + chr3_1:64072227-64072246 Msa0367990:intron 30.0%
!! TATTTGATTCTTTTGGTGAC+TGG + chr3_1:64072293-64072312 Msa0367990:intron 30.0%
GAGAGAGGAAATTAAAAATG+TGG - chr3_1:64072448-64072467 None:intergenic 30.0%
TTCCAAAAGCAAATTTGCAA+TGG - chr3_1:64072647-64072666 None:intergenic 30.0%
ATTAGAAAAAGATGCACCAT+TGG + chr3_1:64072797-64072816 Msa0367990:three_prime_UTR 30.0%
GACATCCATGTGAATATAAA+AGG + chr3_1:64072819-64072838 Msa0367990:three_prime_UTR 30.0%
TATAAAAGGCAAAAGGAAAG+AGG + chr3_1:64072833-64072852 Msa0367990:three_prime_UTR 30.0%
! ATGTGAATGTTTTGTGGTGA+GGG - chr3_1:64070838-64070857 None:intergenic 35.0%
! TATGTGAATGTTTTGTGGTG+AGG - chr3_1:64070839-64070858 None:intergenic 35.0%
GAAAGTTGAGAAGATCAAGA+GGG - chr3_1:64070906-64070925 None:intergenic 35.0%
TGAAAGTTGAGAAGATCAAG+AGG - chr3_1:64070907-64070926 None:intergenic 35.0%
GTAGGTTGCTGAGTTTATTA+GGG - chr3_1:64071035-64071054 None:intergenic 35.0%
TGTAGGTTGCTGAGTTTATT+AGG - chr3_1:64071036-64071055 None:intergenic 35.0%
ACGATTGTGTTGAAGAAATG+TGG + chr3_1:64071280-64071299 Msa0367990:CDS 35.0%
CGATTGTGTTGAAGAAATGT+GGG + chr3_1:64071281-64071300 Msa0367990:CDS 35.0%
!! TGTTGGAGATTTGAGTTTTG+TGG + chr3_1:64071417-64071436 Msa0367990:CDS 35.0%
TTGAGAAATGATTGTCCTTC+TGG + chr3_1:64071475-64071494 Msa0367990:CDS 35.0%
TGAGAAATGATTGTCCTTCT+GGG + chr3_1:64071476-64071495 Msa0367990:CDS 35.0%
!!! ATAATTTTGGCCTTACCATG+AGG - chr3_1:64071583-64071602 None:intergenic 35.0%
! TGGTGATGATTTGCCTAATA+TGG + chr3_1:64071664-64071683 Msa0367990:intron 35.0%
GGCTATCTTGAACATTGTTT+AGG + chr3_1:64071847-64071866 Msa0367990:intron 35.0%
!! GTTTAGGTTGCTCTATCTTT+AGG + chr3_1:64071863-64071882 Msa0367990:intron 35.0%
TCGTTTCTCTGTAGATGAAA+AGG + chr3_1:64072175-64072194 Msa0367990:intron 35.0%
TTTCTTGAGAAGGATTTGTG+AGG + chr3_1:64072409-64072428 Msa0367990:CDS 35.0%
TTCTTGAGAAGGATTTGTGA+GGG + chr3_1:64072410-64072429 Msa0367990:CDS 35.0%
CAAATTTGCAATGGAGAAGA+AGG - chr3_1:64072638-64072657 None:intergenic 35.0%
!! CTCCATTGCAAATTTGCTTT+TGG + chr3_1:64072642-64072661 Msa0367990:three_prime_UTR 35.0%
GGCAAGAAAAGATAAGACAT+TGG - chr3_1:64072703-64072722 None:intergenic 35.0%
ATATTCACATGGATGTCCAA+TGG - chr3_1:64072816-64072835 None:intergenic 35.0%
! ATGTGAATGTTTTGTGGTGA+GGG - chr3_1:64070838-64070857 None:intergenic 35.0%
! TATGTGAATGTTTTGTGGTG+AGG - chr3_1:64070839-64070858 None:intergenic 35.0%
GAAAGTTGAGAAGATCAAGA+GGG - chr3_1:64070906-64070925 None:intergenic 35.0%
TGAAAGTTGAGAAGATCAAG+AGG - chr3_1:64070907-64070926 None:intergenic 35.0%
GTAGGTTGCTGAGTTTATTA+GGG - chr3_1:64071035-64071054 None:intergenic 35.0%
TGTAGGTTGCTGAGTTTATT+AGG - chr3_1:64071036-64071055 None:intergenic 35.0%
ACGATTGTGTTGAAGAAATG+TGG + chr3_1:64071280-64071299 Msa0367990:CDS 35.0%
CGATTGTGTTGAAGAAATGT+GGG + chr3_1:64071281-64071300 Msa0367990:CDS 35.0%
!! TGTTGGAGATTTGAGTTTTG+TGG + chr3_1:64071417-64071436 Msa0367990:CDS 35.0%
TTGAGAAATGATTGTCCTTC+TGG + chr3_1:64071475-64071494 Msa0367990:CDS 35.0%
TGAGAAATGATTGTCCTTCT+GGG + chr3_1:64071476-64071495 Msa0367990:CDS 35.0%
!!! ATAATTTTGGCCTTACCATG+AGG - chr3_1:64071583-64071602 None:intergenic 35.0%
! TGGTGATGATTTGCCTAATA+TGG + chr3_1:64071664-64071683 Msa0367990:intron 35.0%
GGCTATCTTGAACATTGTTT+AGG + chr3_1:64071847-64071866 Msa0367990:intron 35.0%
!! GTTTAGGTTGCTCTATCTTT+AGG + chr3_1:64071863-64071882 Msa0367990:intron 35.0%
TCGTTTCTCTGTAGATGAAA+AGG + chr3_1:64072175-64072194 Msa0367990:intron 35.0%
TTTCTTGAGAAGGATTTGTG+AGG + chr3_1:64072409-64072428 Msa0367990:CDS 35.0%
TTCTTGAGAAGGATTTGTGA+GGG + chr3_1:64072410-64072429 Msa0367990:CDS 35.0%
CAAATTTGCAATGGAGAAGA+AGG - chr3_1:64072638-64072657 None:intergenic 35.0%
!! CTCCATTGCAAATTTGCTTT+TGG + chr3_1:64072642-64072661 Msa0367990:three_prime_UTR 35.0%
GGCAAGAAAAGATAAGACAT+TGG - chr3_1:64072703-64072722 None:intergenic 35.0%
ATATTCACATGGATGTCCAA+TGG - chr3_1:64072816-64072835 None:intergenic 35.0%
!! TTAGGTTGGATTCGTAGGTT+GGG - chr3_1:64070997-64071016 None:intergenic 40.0%
!! TTTAGGTTGGATTCGTAGGT+TGG - chr3_1:64070998-64071017 None:intergenic 40.0%
!! TGAGTTTAGGTTGGATTCGT+AGG - chr3_1:64071002-64071021 None:intergenic 40.0%
CTGAGTTTATTAGGGATGTG+AGG - chr3_1:64071027-64071046 None:intergenic 40.0%
GAAGTTGTTGTAGGATGTGT+AGG - chr3_1:64071053-64071072 None:intergenic 40.0%
! GATGATGGTGAAGTTGTTGT+AGG - chr3_1:64071062-64071081 None:intergenic 40.0%
GTGTCAAGATTGTGTTTCAG+AGG + chr3_1:64071441-64071460 Msa0367990:CDS 40.0%
GACAATCATTTCTCAACCGT+CGG - chr3_1:64071471-64071490 None:intergenic 40.0%
GAGAAATGATTGTCCTTCTG+GGG + chr3_1:64071477-64071496 Msa0367990:CDS 40.0%
ATATCTCCATAATCCCCAGA+AGG - chr3_1:64071493-64071512 None:intergenic 40.0%
! TGTTATGCAAGGTACTCTAC+TGG + chr3_1:64071526-64071545 Msa0367990:CDS 40.0%
TACACCTCACACTATTGAAG+TGG - chr3_1:64071890-64071909 None:intergenic 40.0%
!! TTAGGTTGGATTCGTAGGTT+GGG - chr3_1:64070997-64071016 None:intergenic 40.0%
!! TTTAGGTTGGATTCGTAGGT+TGG - chr3_1:64070998-64071017 None:intergenic 40.0%
!! TGAGTTTAGGTTGGATTCGT+AGG - chr3_1:64071002-64071021 None:intergenic 40.0%
CTGAGTTTATTAGGGATGTG+AGG - chr3_1:64071027-64071046 None:intergenic 40.0%
GAAGTTGTTGTAGGATGTGT+AGG - chr3_1:64071053-64071072 None:intergenic 40.0%
! GATGATGGTGAAGTTGTTGT+AGG - chr3_1:64071062-64071081 None:intergenic 40.0%
GTGTCAAGATTGTGTTTCAG+AGG + chr3_1:64071441-64071460 Msa0367990:CDS 40.0%
GACAATCATTTCTCAACCGT+CGG - chr3_1:64071471-64071490 None:intergenic 40.0%
GAGAAATGATTGTCCTTCTG+GGG + chr3_1:64071477-64071496 Msa0367990:CDS 40.0%
ATATCTCCATAATCCCCAGA+AGG - chr3_1:64071493-64071512 None:intergenic 40.0%
! TGTTATGCAAGGTACTCTAC+TGG + chr3_1:64071526-64071545 Msa0367990:CDS 40.0%
TACACCTCACACTATTGAAG+TGG - chr3_1:64071890-64071909 None:intergenic 40.0%
CTGTGGGGATGGAAAATGAA+TGG - chr3_1:64070934-64070953 None:intergenic 45.0%
! TAGGTTGGATTCGTAGGTTG+GGG - chr3_1:64070996-64071015 None:intergenic 45.0%
TGTGAGGAGTGAGTTTAGGT+TGG - chr3_1:64071011-64071030 None:intergenic 45.0%
GTTAGGGTTTGAGGAGATGA+TGG - chr3_1:64071077-64071096 None:intergenic 45.0%
AACCCTAACGACATCGTCTA+CGG + chr3_1:64071088-64071107 Msa0367990:CDS 45.0%
AAGAAATGTGGGCCTGAAGT+AGG + chr3_1:64071292-64071311 Msa0367990:CDS 45.0%
AGAAATGTGGGCCTGAAGTA+GGG + chr3_1:64071293-64071312 Msa0367990:CDS 45.0%
AACACAGCATCTATCGTACC+CGG - chr3_1:64071325-64071344 None:intergenic 45.0%
GGTACGATAGATGCTGTGTT+GGG + chr3_1:64071325-64071344 Msa0367990:CDS 45.0%
!! GTTGTTTAGGGTTGGTGGTT+CGG + chr3_1:64071369-64071388 Msa0367990:CDS 45.0%
!! TTGTTTAGGGTTGGTGGTTC+GGG + chr3_1:64071370-64071389 Msa0367990:CDS 45.0%
! GATTGTCCTTCTGGGGATTA+TGG + chr3_1:64071484-64071503 Msa0367990:CDS 45.0%
!! TCTTGGGGAAGTGTTATGCA+AGG + chr3_1:64071515-64071534 Msa0367990:CDS 45.0%
! TATGCAAGGTACTCTACTGG+TGG + chr3_1:64071529-64071548 Msa0367990:CDS 45.0%
TTACTCCAAGCCTCATGGTA+AGG + chr3_1:64071570-64071589 Msa0367990:intron 45.0%
GCAGGTAAATCAGATCACGA+TGG + chr3_1:64072320-64072339 Msa0367990:intron 45.0%
AGAAGGATTTGTGAGGGACA+AGG + chr3_1:64072416-64072435 Msa0367990:CDS 45.0%
GAAGGCTGAGAATTGATCAG+TGG - chr3_1:64072620-64072639 None:intergenic 45.0%
! AATGTTTTGTGGTGAGGGAC+AGG - chr3_1:64070833-64070852 None:intergenic 45.0%
CTGTGGGGATGGAAAATGAA+TGG - chr3_1:64070934-64070953 None:intergenic 45.0%
! TAGGTTGGATTCGTAGGTTG+GGG - chr3_1:64070996-64071015 None:intergenic 45.0%
TGTGAGGAGTGAGTTTAGGT+TGG - chr3_1:64071011-64071030 None:intergenic 45.0%
GTTAGGGTTTGAGGAGATGA+TGG - chr3_1:64071077-64071096 None:intergenic 45.0%
AACCCTAACGACATCGTCTA+CGG + chr3_1:64071088-64071107 Msa0367990:CDS 45.0%
AAGAAATGTGGGCCTGAAGT+AGG + chr3_1:64071292-64071311 Msa0367990:CDS 45.0%
AGAAATGTGGGCCTGAAGTA+GGG + chr3_1:64071293-64071312 Msa0367990:CDS 45.0%
AACACAGCATCTATCGTACC+CGG - chr3_1:64071325-64071344 None:intergenic 45.0%
GGTACGATAGATGCTGTGTT+GGG + chr3_1:64071325-64071344 Msa0367990:CDS 45.0%
!! GTTGTTTAGGGTTGGTGGTT+CGG + chr3_1:64071369-64071388 Msa0367990:CDS 45.0%
!! TTGTTTAGGGTTGGTGGTTC+GGG + chr3_1:64071370-64071389 Msa0367990:CDS 45.0%
! GATTGTCCTTCTGGGGATTA+TGG + chr3_1:64071484-64071503 Msa0367990:CDS 45.0%
!! TCTTGGGGAAGTGTTATGCA+AGG + chr3_1:64071515-64071534 Msa0367990:CDS 45.0%
! TATGCAAGGTACTCTACTGG+TGG + chr3_1:64071529-64071548 Msa0367990:CDS 45.0%
TTACTCCAAGCCTCATGGTA+AGG + chr3_1:64071570-64071589 Msa0367990:intron 45.0%
GCAGGTAAATCAGATCACGA+TGG + chr3_1:64072320-64072339 Msa0367990:intron 45.0%
AGAAGGATTTGTGAGGGACA+AGG + chr3_1:64072416-64072435 Msa0367990:CDS 45.0%
GAAGGCTGAGAATTGATCAG+TGG - chr3_1:64072620-64072639 None:intergenic 45.0%
CGTAGAGGAATGTGTCTGTG+GGG - chr3_1:64070949-64070968 None:intergenic 50.0%
CCGTAGAGGAATGTGTCTGT+GGG - chr3_1:64070950-64070969 None:intergenic 50.0%
CCCACAGACACATTCCTCTA+CGG + chr3_1:64070947-64070966 Msa0367990:CDS 50.0%
ACCGTAGAGGAATGTGTCTG+TGG - chr3_1:64070951-64070970 None:intergenic 50.0%
ACAGACACATTCCTCTACGG+TGG + chr3_1:64070950-64070969 Msa0367990:CDS 50.0%
CAGACACATTCCTCTACGGT+GGG + chr3_1:64070951-64070970 Msa0367990:CDS 50.0%
GGGATGTGAGGAGTGAGTTT+AGG - chr3_1:64071015-64071034 None:intergenic 50.0%
GACGATGTCGTTAGGGTTTG+AGG - chr3_1:64071086-64071105 None:intergenic 50.0%
TATGTCACCAACGCGTGAGA+CGG - chr3_1:64071173-64071192 None:intergenic 50.0%
ACACAGCATCTATCGTACCC+GGG - chr3_1:64071324-64071343 None:intergenic 50.0%
GGGTACGATAGATGCTGTGT+TGG + chr3_1:64071324-64071343 Msa0367990:CDS 50.0%
ACGATAGATGCTGTGTTGGG+TGG + chr3_1:64071328-64071347 Msa0367990:CDS 50.0%
CGATAGATGCTGTGTTGGGT+GGG + chr3_1:64071329-64071348 Msa0367990:CDS 50.0%
!! GGGTTCAGGTGGGTTGTTTA+GGG + chr3_1:64071357-64071376 Msa0367990:CDS 50.0%
!! TCAGGTGGGTTGTTTAGGGT+TGG + chr3_1:64071361-64071380 Msa0367990:CDS 50.0%
TTCGGGTCAGTTGAAGGGAA+TGG + chr3_1:64071387-64071406 Msa0367990:CDS 50.0%
AAGGGAATGGCACAGTGTGT+TGG + chr3_1:64071400-64071419 Msa0367990:CDS 50.0%
GTGTTTCAGAGGCAATCCGA+CGG + chr3_1:64071452-64071471 Msa0367990:CDS 50.0%
CATGCTTACTCCAAGCCTCA+TGG + chr3_1:64071565-64071584 Msa0367990:CDS 50.0%
!! TTTGGCCTTACCATGAGGCT+TGG - chr3_1:64071578-64071597 None:intergenic 50.0%
AGGGCCACTTCAATAGTGTG+AGG + chr3_1:64071883-64071902 Msa0367990:intron 50.0%
!!! CTTTTGGTGACTGGTCTTGC+AGG + chr3_1:64072302-64072321 Msa0367990:intron 50.0%
CGTAGAGGAATGTGTCTGTG+GGG - chr3_1:64070949-64070968 None:intergenic 50.0%
CCGTAGAGGAATGTGTCTGT+GGG - chr3_1:64070950-64070969 None:intergenic 50.0%
CCCACAGACACATTCCTCTA+CGG + chr3_1:64070947-64070966 Msa0367990:CDS 50.0%
ACCGTAGAGGAATGTGTCTG+TGG - chr3_1:64070951-64070970 None:intergenic 50.0%
ACAGACACATTCCTCTACGG+TGG + chr3_1:64070950-64070969 Msa0367990:CDS 50.0%
CAGACACATTCCTCTACGGT+GGG + chr3_1:64070951-64070970 Msa0367990:CDS 50.0%
GGGATGTGAGGAGTGAGTTT+AGG - chr3_1:64071015-64071034 None:intergenic 50.0%
GACGATGTCGTTAGGGTTTG+AGG - chr3_1:64071086-64071105 None:intergenic 50.0%
TATGTCACCAACGCGTGAGA+CGG - chr3_1:64071173-64071192 None:intergenic 50.0%
ACACAGCATCTATCGTACCC+GGG - chr3_1:64071324-64071343 None:intergenic 50.0%
GGGTACGATAGATGCTGTGT+TGG + chr3_1:64071324-64071343 Msa0367990:CDS 50.0%
ACGATAGATGCTGTGTTGGG+TGG + chr3_1:64071328-64071347 Msa0367990:CDS 50.0%
CGATAGATGCTGTGTTGGGT+GGG + chr3_1:64071329-64071348 Msa0367990:CDS 50.0%
!! GGGTTCAGGTGGGTTGTTTA+GGG + chr3_1:64071357-64071376 Msa0367990:CDS 50.0%
!! TCAGGTGGGTTGTTTAGGGT+TGG + chr3_1:64071361-64071380 Msa0367990:CDS 50.0%
TTCGGGTCAGTTGAAGGGAA+TGG + chr3_1:64071387-64071406 Msa0367990:CDS 50.0%
AAGGGAATGGCACAGTGTGT+TGG + chr3_1:64071400-64071419 Msa0367990:CDS 50.0%
GTGTTTCAGAGGCAATCCGA+CGG + chr3_1:64071452-64071471 Msa0367990:CDS 50.0%
CATGCTTACTCCAAGCCTCA+TGG + chr3_1:64071565-64071584 Msa0367990:CDS 50.0%
!! TTTGGCCTTACCATGAGGCT+TGG - chr3_1:64071578-64071597 None:intergenic 50.0%
AGGGCCACTTCAATAGTGTG+AGG + chr3_1:64071883-64071902 Msa0367990:intron 50.0%
!!! CTTTTGGTGACTGGTCTTGC+AGG + chr3_1:64072302-64072321 Msa0367990:intron 50.0%
GAGGAATGTGTCTGTGGGGA+TGG - chr3_1:64070945-64070964 None:intergenic 55.0%
GGCCGTAGACGATGTCGTTA+GGG - chr3_1:64071093-64071112 None:intergenic 55.0%
AGGCCGTAGACGATGTCGTT+AGG - chr3_1:64071094-64071113 None:intergenic 55.0%
TACGGCCTCTACCAATGTCG+TGG + chr3_1:64071106-64071125 Msa0367990:CDS 55.0%
TGTCGCCACGACATTGGTAG+AGG - chr3_1:64071114-64071133 None:intergenic 55.0%
TGGAGATGTCGCCACGACAT+TGG - chr3_1:64071120-64071139 None:intergenic 55.0%
!! CGCGTTGGTGACATATGTCC+TGG + chr3_1:64071178-64071197 Msa0367990:CDS 55.0%
GACATATGTCCTGGCGTGTG+TGG + chr3_1:64071187-64071206 Msa0367990:CDS 55.0%
ATATGTCCTGGCGTGTGTGG+CGG + chr3_1:64071190-64071209 Msa0367990:CDS 55.0%
GGCGGCGTAGTGCAATTAGA+AGG + chr3_1:64071208-64071227 Msa0367990:CDS 55.0%
GCCTGAAGTAGGGTATGACC+CGG + chr3_1:64071303-64071322 Msa0367990:CDS 55.0%
CCTGAAGTAGGGTATGACCC+GGG + chr3_1:64071304-64071323 Msa0367990:CDS 55.0%
AGATGCTGTGTTGGGTGGGT+TGG + chr3_1:64071333-64071352 Msa0367990:CDS 55.0%
!! CGGGTTCAGGTGGGTTGTTT+AGG + chr3_1:64071356-64071375 Msa0367990:CDS 55.0%
!! GGTGGGTTGTTTAGGGTTGG+TGG + chr3_1:64071364-64071383 Msa0367990:CDS 55.0%
! TGGTGGTTCGGGTCAGTTGA+AGG + chr3_1:64071381-64071400 Msa0367990:CDS 55.0%
! GGTGGTTCGGGTCAGTTGAA+GGG + chr3_1:64071382-64071401 Msa0367990:CDS 55.0%
! AGGTACTCTACTGGTGGTGC+TGG + chr3_1:64071535-64071554 Msa0367990:CDS 55.0%
! TACTCTACTGGTGGTGCTGG+TGG + chr3_1:64071538-64071557 Msa0367990:CDS 55.0%
!! ACTCTACTGGTGGTGCTGGT+GGG + chr3_1:64071539-64071558 Msa0367990:CDS 55.0%
GAGGAATGTGTCTGTGGGGA+TGG - chr3_1:64070945-64070964 None:intergenic 55.0%
GGCCGTAGACGATGTCGTTA+GGG - chr3_1:64071093-64071112 None:intergenic 55.0%
AGGCCGTAGACGATGTCGTT+AGG - chr3_1:64071094-64071113 None:intergenic 55.0%
TACGGCCTCTACCAATGTCG+TGG + chr3_1:64071106-64071125 Msa0367990:CDS 55.0%
TGTCGCCACGACATTGGTAG+AGG - chr3_1:64071114-64071133 None:intergenic 55.0%
TGGAGATGTCGCCACGACAT+TGG - chr3_1:64071120-64071139 None:intergenic 55.0%
!! CGCGTTGGTGACATATGTCC+TGG + chr3_1:64071178-64071197 Msa0367990:CDS 55.0%
GACATATGTCCTGGCGTGTG+TGG + chr3_1:64071187-64071206 Msa0367990:CDS 55.0%
ATATGTCCTGGCGTGTGTGG+CGG + chr3_1:64071190-64071209 Msa0367990:CDS 55.0%
GGCGGCGTAGTGCAATTAGA+AGG + chr3_1:64071208-64071227 Msa0367990:CDS 55.0%
GCCTGAAGTAGGGTATGACC+CGG + chr3_1:64071303-64071322 Msa0367990:CDS 55.0%
CCTGAAGTAGGGTATGACCC+GGG + chr3_1:64071304-64071323 Msa0367990:CDS 55.0%
AGATGCTGTGTTGGGTGGGT+TGG + chr3_1:64071333-64071352 Msa0367990:CDS 55.0%
!! CGGGTTCAGGTGGGTTGTTT+AGG + chr3_1:64071356-64071375 Msa0367990:CDS 55.0%
!! GGTGGGTTGTTTAGGGTTGG+TGG + chr3_1:64071364-64071383 Msa0367990:CDS 55.0%
! TGGTGGTTCGGGTCAGTTGA+AGG + chr3_1:64071381-64071400 Msa0367990:CDS 55.0%
! GGTGGTTCGGGTCAGTTGAA+GGG + chr3_1:64071382-64071401 Msa0367990:CDS 55.0%
! AGGTACTCTACTGGTGGTGC+TGG + chr3_1:64071535-64071554 Msa0367990:CDS 55.0%
! TACTCTACTGGTGGTGCTGG+TGG + chr3_1:64071538-64071557 Msa0367990:CDS 55.0%
!! ACTCTACTGGTGGTGCTGGT+GGG + chr3_1:64071539-64071558 Msa0367990:CDS 55.0%
CTTGTGTGCACCCACCGTAG+AGG - chr3_1:64070964-64070983 None:intergenic 60.0%
GCAATGCAGGAGGAGCAGTC+TGG - chr3_1:64071145-64071164 None:intergenic 60.0%
TGAGACGGCACGTGCAATGC+AGG - chr3_1:64071158-64071177 None:intergenic 60.0%
CCCGGGTCATACCCTACTTC+AGG - chr3_1:64071307-64071326 None:intergenic 60.0%
!! TGCTGTGTTGGGTGGGTTGG+CGG + chr3_1:64071336-64071355 Msa0367990:CDS 60.0%
!! CTCTACTGGTGGTGCTGGTG+GGG + chr3_1:64071540-64071559 Msa0367990:CDS 60.0%
CTTGTGTGCACCCACCGTAG+AGG - chr3_1:64070964-64070983 None:intergenic 60.0%
GCAATGCAGGAGGAGCAGTC+TGG - chr3_1:64071145-64071164 None:intergenic 60.0%
TGAGACGGCACGTGCAATGC+AGG - chr3_1:64071158-64071177 None:intergenic 60.0%
CCCGGGTCATACCCTACTTC+AGG - chr3_1:64071307-64071326 None:intergenic 60.0%
!! TGCTGTGTTGGGTGGGTTGG+CGG + chr3_1:64071336-64071355 Msa0367990:CDS 60.0%
!! CTCTACTGGTGGTGCTGGTG+GGG + chr3_1:64071540-64071559 Msa0367990:CDS 60.0%
GCAGGAGGAGCAGTCTGGCA+TGG - chr3_1:64071140-64071159 None:intergenic 65.0%
GACGGCACGTGCAATGCAGG+AGG - chr3_1:64071155-64071174 None:intergenic 65.0%
!! GCTGTGTTGGGTGGGTTGGC+GGG + chr3_1:64071337-64071356 Msa0367990:CDS 65.0%
!! TTGGGTGGGTTGGCGGGTTC+AGG + chr3_1:64071343-64071362 Msa0367990:CDS 65.0%
!! GTGGGTTGGCGGGTTCAGGT+GGG + chr3_1:64071347-64071366 Msa0367990:CDS 65.0%
GCAGGAGGAGCAGTCTGGCA+TGG - chr3_1:64071140-64071159 None:intergenic 65.0%
GACGGCACGTGCAATGCAGG+AGG - chr3_1:64071155-64071174 None:intergenic 65.0%
!! GCTGTGTTGGGTGGGTTGGC+GGG + chr3_1:64071337-64071356 Msa0367990:CDS 65.0%
!! TTGGGTGGGTTGGCGGGTTC+AGG + chr3_1:64071343-64071362 Msa0367990:CDS 65.0%
!! GTGGGTTGGCGGGTTCAGGT+GGG + chr3_1:64071347-64071366 Msa0367990:CDS 65.0%
GCACGTGCCGTCTCACGCGT+TGG + chr3_1:64071163-64071182 Msa0367990:CDS 70.0%
ACTACGCCGCCACACACGCC+AGG - chr3_1:64071199-64071218 None:intergenic 70.0%
!! GGTGGGTTGGCGGGTTCAGG+TGG + chr3_1:64071346-64071365 Msa0367990:CDS 70.0%
GCACGTGCCGTCTCACGCGT+TGG + chr3_1:64071163-64071182 Msa0367990:CDS 70.0%
ACTACGCCGCCACACACGCC+AGG - chr3_1:64071199-64071218 None:intergenic 70.0%
!! GGTGGGTTGGCGGGTTCAGG+TGG + chr3_1:64071346-64071365 Msa0367990:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 64070831 64072900 64070831 ID=Msa0367990;Name=Msa0367990
chr3_1 mRNA 64070831 64072900 64070831 ID=Msa0367990-mRNA-1;Parent=Msa0367990;Name=Msa0367990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=47|1|1|1|1|1|3|323|276
chr3_1 exon 64070831 64071586 64070831 ID=Msa0367990-mRNA-1:exon:12769;Parent=Msa0367990-mRNA-1
chr3_1 exon 64072324 64072437 64072324 ID=Msa0367990-mRNA-1:exon:12770;Parent=Msa0367990-mRNA-1
chr3_1 exon 64072570 64072900 64072570 ID=Msa0367990-mRNA-1:exon:12771;Parent=Msa0367990-mRNA-1
chr3_1 five_prime_UTR 64070831 64070877 64070831 ID=Msa0367990-mRNA-1:five_prime_utr;Parent=Msa0367990-mRNA-1
chr3_1 CDS 64070878 64071586 64070878 ID=Msa0367990-mRNA-1:cds;Parent=Msa0367990-mRNA-1
chr3_1 CDS 64072324 64072437 64072324 ID=Msa0367990-mRNA-1:cds;Parent=Msa0367990-mRNA-1
chr3_1 CDS 64072570 64072577 64072570 ID=Msa0367990-mRNA-1:cds;Parent=Msa0367990-mRNA-1
chr3_1 three_prime_UTR 64072578 64072900 64072578 ID=Msa0367990-mRNA-1:three_prime_utr;Parent=Msa0367990-mRNA-1
Gene Sequence

>Msa0367990

ATGGTCAAAACAAAAAAATTTCTCTCCCTCTTGATCTTCTCAACTTTCATTCTCCATTCATTTTCCATCCCCACAGACACATTCCTCTACGGTGGGTGCACACAAGAAAAATACACCCCAACCTACGAATCCAACCTAAACTCACTCCTCACATCCCTAATAAACTCAGCAACCTACACATCCTACAACAACTTCACCATCATCTCCTCAAACCCTAACGACATCGTCTACGGCCTCTACCAATGTCGTGGCGACATCTCCATGCCAGACTGCTCCTCCTGCATTGCACGTGCCGTCTCACGCGTTGGTGACATATGTCCTGGCGTGTGTGGCGGCGTAGTGCAATTAGAAGGATGTTATGTGAAGTATGACAATGTTAAGTTTTTAGGCATGGAAGATAAAACGATTGTGTTGAAGAAATGTGGGCCTGAAGTAGGGTATGACCCGGGTACGATAGATGCTGTGTTGGGTGGGTTGGCGGGTTCAGGTGGGTTGTTTAGGGTTGGTGGTTCGGGTCAGTTGAAGGGAATGGCACAGTGTGTTGGAGATTTGAGTTTTGTGGAGTGTCAAGATTGTGTTTCAGAGGCAATCCGACGGTTGAGAAATGATTGTCCTTCTGGGGATTATGGAGATATATTCTTGGGGAAGTGTTATGCAAGGTACTCTACTGGTGGTGCTGGTGGGGCACATGCTTACTCCAAGCCTCATGGTAAATCAGATCACGATGGTGAGAAGACATTTGCCATAATTATTGGATTATTAGCAGTTGTTGCTATACTTATTATTTTTTTTGCTTTCTTGAGAAGGATTTGTGAGGGACAAGGTAAATAA
Protein sequence

>Msa0367990

MVKTKKFLSLLIFSTFILHSFSIPTDTFLYGGCTQEKYTPTYESNLNSLLTSLINSATYTSYNNFTIISSNPNDIVYGLYQCRGDISMPDCSSCIARAVSRVGDICPGVCGGVVQLEGCYVKYDNVKFLGMEDKTIVLKKCGPEVGYDPGTIDAVLGGLAGSGGLFRVGGSGQLKGMAQCVGDLSFVECQDCVSEAIRRLRNDCPSGDYGDIFLGKCYARYSTGGAGGAHAYSKPHGKSDHDGEKTFAIIIGLLAVVAILIIFFAFLRRICEGQGK*