AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0856220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0856220 MtrunA17_Chr5g0434531 98.201 278 5 0 1 278 1 278 0.0 553
Msa0856220 MtrunA17_Chr3g0110311 64.769 281 91 3 1 278 1 276 1.85e-122 350
Msa0856220 MtrunA17_Chr8g0391511 50.575 261 122 2 23 276 27 287 2.22e-91 272
Msa0856220 MtrunA17_Chr7g0230381 42.308 260 142 7 1 256 14 269 2.01e-63 200
Msa0856220 MtrunA17_Chr1g0168311 31.119 286 180 8 6 276 6 289 2.46e-27 107
Msa0856220 MtrunA17_Chr1g0190321 31.959 291 170 14 8 278 10 292 5.24e-27 106
Msa0856220 MtrunA17_Chr1g0186151 28.975 283 179 7 13 276 18 297 8.59e-26 103
Msa0856220 MtrunA17_Chr7g0262011 27.465 284 182 8 5 277 85 355 2.36e-25 103
Msa0856220 MtrunA17_Chr2g0323011 28.571 231 154 2 8 227 9 239 4.93e-23 94.7
Msa0856220 MtrunA17_Chr2g0322981 27.966 236 158 5 3 227 5 239 3.99e-22 92.4
Msa0856220 MtrunA17_Chr1g0206331 27.099 262 145 6 7 237 11 257 7.15e-22 95.1
Msa0856220 MtrunA17_Chr5g0394001 28.929 280 167 8 13 269 15 285 1.66e-19 88.2
Msa0856220 MtrunA17_Chr6g0474871 29.388 245 146 8 4 226 3 242 4.31e-19 87.0
Msa0856220 MtrunA17_Chr1g0206351 28.571 217 136 4 28 227 34 248 5.71e-19 86.7
Msa0856220 MtrunA17_Chr3g0081001 26.360 239 154 5 1 226 10 239 1.90e-18 85.1
Msa0856220 MtrunA17_Chr3g0081031 25.630 238 158 4 6 228 21 254 1.05e-17 82.8
Msa0856220 MtrunA17_Chr6g0475001 27.083 240 156 6 6 226 5 244 1.93e-17 82.0
Msa0856220 MtrunA17_Chr6g0474971 26.923 260 168 7 4 246 3 257 3.34e-17 80.1
Msa0856220 MtrunA17_Chr6g0475201 26.141 241 159 4 5 226 3 243 3.91e-17 81.3
Msa0856220 MtrunA17_Chr8g0354351 23.051 295 202 6 3 277 5 294 4.93e-17 80.9
Msa0856220 MtrunA17_Chr6g0474901 26.457 223 124 3 33 227 28 238 4.95e-17 80.9
Msa0856220 MtrunA17_Chr1g0206361 25.379 264 174 8 23 266 31 291 2.14e-16 79.0
Msa0856220 MtrunA17_Chr8g0354341 24.312 218 152 3 22 226 22 239 2.67e-16 76.6
Msa0856220 MtrunA17_Chr8g0347571 25.424 236 166 3 1 226 1 236 3.24e-16 78.6
Msa0856220 MtrunA17_Chr3g0081011 25.616 203 138 3 34 226 39 238 4.57e-16 78.2
Msa0856220 MtrunA17_Chr7g0234231 27.273 198 121 5 46 227 42 232 5.82e-16 75.9
Msa0856220 MtrunA17_Chr1g0205771 22.876 306 207 8 1 278 7 311 7.02e-16 77.4
Msa0856220 MtrunA17_Chr6g0474861 26.047 215 141 6 2 204 6 214 7.15e-16 77.4
Msa0856220 MtrunA17_Chr3g0081051 24.138 232 164 3 9 228 5 236 1.33e-15 74.7
Msa0856220 MtrunA17_Chr1g0206291 25.620 242 156 6 7 227 21 259 2.54e-15 75.5
Msa0856220 MtrunA17_Chr8g0354421 27.354 223 146 5 3 211 28 248 3.47e-15 75.5
Msa0856220 MtrunA17_Chr6g0474811 26.230 244 156 6 6 227 5 246 8.29e-15 74.3
Msa0856220 MtrunA17_Chr1g0154351 27.459 244 149 9 7 228 10 247 1.30e-14 73.6
Msa0856220 MtrunA17_Chr7g0226901 28.511 235 144 9 6 228 10 232 2.59e-14 71.2
Msa0856220 MtrunA17_Chr5g0428591 26.341 205 132 4 38 227 39 239 2.72e-14 71.2
Msa0856220 MtrunA17_Chr5g0393981 28.272 191 108 3 38 207 113 295 3.01e-14 72.8
Msa0856220 MtrunA17_Chr5g0428571 26.214 206 133 4 38 228 40 241 1.59e-13 70.5
Msa0856220 MtrunA17_Chr6g0475121 26.263 198 125 5 20 204 272 461 1.13e-12 67.8
Msa0856220 MtrunA17_Chr6g0475121 25.847 236 154 4 7 226 14 244 6.48e-12 65.5
Msa0856220 MtrunA17_Chr6g0475111 25.514 243 164 3 1 226 4 246 2.15e-12 67.0
Msa0856220 MtrunA17_Chr8g0354411 26.214 206 124 5 27 211 28 226 3.14e-12 65.9
Msa0856220 MtrunA17_Chr5g0394021 24.161 298 185 8 1 273 10 291 4.50e-12 66.2
Msa0856220 MtrunA17_Chr8g0354431 25.110 227 148 8 2 211 5 226 6.24e-12 65.5
Msa0856220 MtrunA17_Chr3g0109411 25.446 224 151 5 17 227 18 238 8.77e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0856220 AT5G37660.1 58.571 280 114 2 1 278 9 288 4.43e-109 317
Msa0856220 AT5G37660.2 58.423 279 114 2 1 277 9 287 4.10e-108 315
Msa0856220 AT2G01660.3 52.330 279 124 4 6 275 5 283 2.42e-98 290
Msa0856220 AT2G01660.1 52.330 279 124 4 6 275 5 283 2.85e-98 290
Msa0856220 AT2G01660.2 55.000 240 104 3 6 241 5 244 2.35e-90 269
Msa0856220 AT1G70690.1 43.617 282 146 4 7 275 10 291 2.83e-73 227
Msa0856220 AT3G60720.3 38.672 256 151 3 25 275 26 280 4.47e-57 185
Msa0856220 AT3G60720.1 39.216 255 145 4 25 274 26 275 6.29e-57 184
Msa0856220 AT3G60720.2 38.813 219 129 2 25 238 26 244 4.74e-50 166
Msa0856220 AT2G33330.1 27.304 293 194 5 1 276 10 300 2.06e-24 100
Msa0856220 AT1G04520.1 26.885 305 187 6 2 276 5 303 1.20e-23 98.2
Msa0856220 AT5G43980.1 28.102 274 175 6 26 278 27 299 2.02e-19 86.3
Msa0856220 AT5G48540.1 27.053 207 136 3 34 226 30 235 6.29e-19 84.3
Msa0856220 AT1G63550.1 26.570 207 135 4 38 229 42 246 4.11e-17 80.1
Msa0856220 AT3G58310.1 28.326 233 151 6 18 236 28 258 1.17e-16 78.2
Msa0856220 AT3G22060.1 30.000 220 133 7 23 226 29 243 1.06e-15 75.1
Msa0856220 AT1G63580.1 25.210 238 153 7 44 258 37 272 1.86e-15 75.1
Msa0856220 AT4G05200.1 25.941 239 162 4 4 227 5 243 2.89e-15 75.9
Msa0856220 AT4G05200.2 25.941 239 162 4 4 227 23 261 2.95e-15 75.9
Msa0856220 AT5G41290.1 23.695 249 156 7 3 228 6 243 1.84e-14 72.4
Msa0856220 AT5G41300.1 23.109 238 162 5 8 226 10 245 4.00e-14 71.2
Msa0856220 AT1G63570.3 25.630 238 150 6 9 228 13 241 4.49e-14 71.2
Msa0856220 AT1G63570.1 25.630 238 150 6 9 228 13 241 4.49e-14 71.2
Msa0856220 AT5G40380.3 27.972 286 163 12 3 267 8 271 4.55e-14 72.4
Msa0856220 AT5G40380.2 27.972 286 163 12 3 267 8 271 5.35e-14 72.0
Msa0856220 AT4G23280.2 26.800 250 152 9 18 242 18 261 5.58e-14 72.4
Msa0856220 AT5G40380.1 28.671 286 161 13 3 267 8 271 5.59e-14 72.0
Msa0856220 AT1G63570.2 26.027 219 139 5 28 228 81 294 5.73e-14 71.2
Msa0856220 AT4G23280.1 26.800 250 152 9 18 242 18 261 6.07e-14 72.0
Msa0856220 AT4G23280.3 26.800 250 152 9 18 242 18 261 6.76e-14 72.0
Msa0856220 AT1G63600.1 22.807 228 156 4 17 226 26 251 1.80e-13 69.7
Msa0856220 AT4G23310.1 28.509 228 144 6 28 239 28 252 2.37e-13 70.5
Msa0856220 AT4G23310.2 28.755 233 145 7 28 244 28 255 3.74e-13 69.7
Msa0856220 AT1G61750.1 21.661 277 178 6 28 267 29 303 7.54e-13 68.2
Msa0856220 AT4G23270.2 27.239 268 160 10 1 242 1 259 1.76e-12 67.8
Msa0856220 AT4G23270.1 27.239 268 160 10 1 242 1 259 1.76e-12 67.8
Msa0856220 AT4G23270.3 27.239 268 160 10 1 242 1 259 1.81e-12 67.8
Msa0856220 AT3G21970.1 26.778 239 142 8 7 221 13 242 2.54e-12 65.9
Msa0856220 AT4G23180.3 29.703 202 113 8 28 208 39 232 4.71e-12 66.2
Msa0856220 AT4G23180.2 29.703 202 113 8 28 208 39 232 5.30e-12 66.2
Msa0856220 AT4G23180.1 29.703 202 113 8 28 208 39 232 7.89e-12 65.9
Msa0856220 AT4G23160.3 25.714 210 119 7 22 205 619 817 1.35e-11 65.1
Msa0856220 AT4G23160.2 25.714 210 119 7 22 205 619 817 1.35e-11 65.1
Msa0856220 AT4G23160.1 25.714 210 119 7 22 205 39 237 3.25e-11 63.9
Msa0856220 AT4G23170.1 26.977 215 117 10 38 226 39 239 6.69e-11 61.6

Find 109 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATTTGAAAGAGAAAA+AGG 0.202045 5_4:+50617595 None:intergenic
TCTCTTGAGCCCATGGCTTC+TGG 0.211124 5_4:+50619020 None:intergenic
TGTACTGGGGATCTTAGTTT+TGG 0.219626 5_4:-50618918 Msa0856220:CDS
CCCGAACCACCAACCCTAAA+AGG 0.259227 5_4:+50618963 None:intergenic
ATTCTGATAAGGAAAGAAAA+AGG 0.268146 5_4:+50619429 None:intergenic
TGGATGGCTTGCAGGAAAAT+TGG 0.277770 5_4:-50618009 Msa0856220:intron
TTTCATTCTAAGCAAATCAT+AGG 0.285670 5_4:-50619578 Msa0856220:five_prime_UTR
CTTTCTTGAGCAAGATTTGT+AGG 0.299010 5_4:-50617911 Msa0856220:CDS
CTTGGTGGGCTTGTGGGCTT+AGG 0.300238 5_4:-50618990 Msa0856220:CDS
CGTGGTGTTGCCCAGTGTAC+TGG 0.317322 5_4:-50618933 Msa0856220:CDS
ATTAAGTTTGTGACGCTTAG+TGG 0.346920 5_4:-50617710 Msa0856220:three_prime_UTR
GCTGTGCTTGGTGGGCTTGT+GGG 0.350767 5_4:-50618996 Msa0856220:CDS
GATTGTGGTACTGCAGATTA+TGG 0.358387 5_4:-50618849 Msa0856220:CDS
AAGAGATTTGCATTAATCAT+TGG 0.369856 5_4:-50617972 Msa0856220:CDS
GAATGAAAACTTTGAACAAT+GGG 0.370147 5_4:+50619593 None:intergenic
GATTATGGAGATTTGTTCTT+GGG 0.375248 5_4:-50618834 Msa0856220:CDS
AGCAATGAGAATAACAAGTA+TGG 0.392517 5_4:+50617932 None:intergenic
TTTGACTCGTAGGGTGAGTT+TGG 0.395292 5_4:+50619353 None:intergenic
ACCACAAACCTCTACCTATA+CGG 0.397734 5_4:-50619401 Msa0856220:CDS
TGCTGTGCTTGGTGGGCTTG+TGG 0.401298 5_4:-50618997 Msa0856220:CDS
GGTGGGCTTGTGGGCTTAGG+TGG 0.405467 5_4:-50618987 Msa0856220:CDS
TTAATCATTGGTTTATTAGC+AGG 0.406034 5_4:-50617960 Msa0856220:CDS
TCAAGAGATGCTGTGCTTGG+TGG 0.408146 5_4:-50619005 Msa0856220:CDS
GGTCCAGCTCGACGGTTGTT+TGG 0.415998 5_4:-50619126 Msa0856220:CDS
AGATTATGGAGATTTGTTCT+TGG 0.419653 5_4:-50618835 Msa0856220:CDS
CAAGAGATGCTGTGCTTGGT+GGG 0.419763 5_4:-50619004 Msa0856220:CDS
GGCCATAGATTATGTCTTGT+TGG 0.424325 5_4:+50619252 None:intergenic
GTGGGCTTGTGGGCTTAGGT+GGG 0.426219 5_4:-50618986 Msa0856220:CDS
AGATTAAAGACCTATGAGTA+TGG 0.432343 5_4:+50619617 None:intergenic
TGGGGCCCATGATACGTCTA+AGG 0.432532 5_4:-50618784 Msa0856220:CDS
AATTGCACAACTTTGTAAAG+TGG 0.436760 5_4:+50617438 None:intergenic
GCCATAGATTATGTCTTGTT+GGG 0.437656 5_4:+50619253 None:intergenic
CACGCGCTGTCACACGTGCC+GGG 0.442510 5_4:-50619178 Msa0856220:CDS
TTTAAAGTTGAATTCAAAAG+AGG 0.444463 5_4:-50617578 Msa0856220:three_prime_UTR
ACCCAACAAGACATAATCTA+TGG 0.445749 5_4:-50619254 Msa0856220:CDS
GCACGCGCTGTCACACGTGC+CGG 0.453805 5_4:-50619179 Msa0856220:CDS
TAGGGTTGGTGGTTCGGGTA+CGG 0.459468 5_4:-50618958 Msa0856220:CDS
TGTGGTTGATGATTCTGATA+AGG 0.461928 5_4:+50619418 None:intergenic
GTGGTGTTGCCCAGTGTACT+GGG 0.465182 5_4:-50618932 Msa0856220:CDS
TACAACAACTTCACCGTCCT+AGG 0.469752 5_4:-50619281 Msa0856220:CDS
GCAGGAAAATTGGGTATAGT+AGG 0.470565 5_4:-50617999 Msa0856220:intron
CATGGGCCTTAGACGTATCA+TGG 0.471929 5_4:+50618778 None:intergenic
GGCTCAAGAGATGCTGTGCT+TGG 0.472019 5_4:-50619008 Msa0856220:CDS
GTGAGGTGAGGAGTGAATTG+AGG 0.473079 5_4:+50619330 None:intergenic
GGATGGCTTGCAGGAAAATT+GGG 0.474228 5_4:-50618008 Msa0856220:intron
TATGTTATATTATATGCATA+TGG 0.475621 5_4:+50619538 None:intergenic
GGTCACCACGGCATTGGTAG+AGG 0.480397 5_4:+50619231 None:intergenic
TCGCGACTCGTGCGGAGGCA+CGG 0.481840 5_4:-50619147 Msa0856220:CDS
TGTCTTGTTGGGTGGACCCT+AGG 0.483605 5_4:+50619264 None:intergenic
CCGTGGTGACCTCGCTATGC+CGG 0.489440 5_4:-50619219 Msa0856220:CDS
AGAATGAAAACTTTGAACAA+TGG 0.493470 5_4:+50619592 None:intergenic
TGAATTGAGGTTTGACTCGT+AGG 0.499158 5_4:+50619343 None:intergenic
AGAACATCATGAAGCAAAAG+AGG 0.499250 5_4:+50617632 None:intergenic
TAGCGAGGTCACCACGGCAT+TGG 0.499578 5_4:+50619225 None:intergenic
TATGAGTATGGAACTGAAGT+TGG 0.501955 5_4:+50619629 None:intergenic
CACAGCATCTCTTGAGCCCA+TGG 0.506789 5_4:+50619013 None:intergenic
GTTGTGTGCAACCACCGTAT+AGG 0.510615 5_4:+50619387 None:intergenic
AACTAAGATCCCCAGTACAC+TGG 0.510980 5_4:+50618922 None:intergenic
TAGGACGGTGAAGTTGTTGT+AGG 0.515242 5_4:+50619283 None:intergenic
TCACCAAACAACCGTCGAGC+TGG 0.516521 5_4:+50619123 None:intergenic
CACAACTTTGTAAAGTGGAA+AGG 0.519527 5_4:+50617443 None:intergenic
TTCATTCTAAGCAAATCATA+GGG 0.521867 5_4:-50619577 Msa0856220:five_prime_UTR
GCGACACAGGAGGCACAATC+CGG 0.525232 5_4:+50619200 None:intergenic
GGAAAGCAGCTAGAATCTCT+TGG 0.527670 5_4:+50617464 None:intergenic
ATAGATTATGTCTTGTTGGG+TGG 0.527972 5_4:+50619256 None:intergenic
GGGCTATAATCCAGAAGCCA+TGG 0.539733 5_4:-50619030 Msa0856220:CDS
GGCACAAAAGCAACTCATAG+AGG 0.545510 5_4:+50617653 None:intergenic
AACTTCAGTTCCATACTCAT+AGG 0.552041 5_4:-50619627 Msa0856220:five_prime_UTR
ACCGTATAGGTAGAGGTTTG+TGG 0.553030 5_4:+50619400 None:intergenic
ACTAAGATCCCCAGTACACT+GGG 0.557663 5_4:+50618923 None:intergenic
TGTGACAGCGCGTGCGACAC+AGG 0.562753 5_4:+50619187 None:intergenic
GGCTATAATCCAGAAGCCAT+GGG 0.566857 5_4:-50619029 Msa0856220:CDS
ACTGATCAAATCTCACCGTA+TGG 0.572747 5_4:-50617680 Msa0856220:three_prime_UTR
AGACGTATCATGGGCCCCAC+CGG 0.577254 5_4:+50618788 None:intergenic
TGCAACCACCGTATAGGTAG+AGG 0.578158 5_4:+50619393 None:intergenic
ATGCAAGATATTCTACCGGT+GGG 0.580075 5_4:-50618803 Msa0856220:CDS
GAGGACTTTGAACCTTGAAG+AGG 0.580077 5_4:-50617559 Msa0856220:three_prime_UTR
GGTGGTTCGGGTACGGTACG+TGG 0.580668 5_4:-50618951 Msa0856220:CDS
GTGTTGTAGAAGCGATCGGA+CGG 0.581568 5_4:-50618881 Msa0856220:CDS
TACGGTGAGATTTGATCAGT+GGG 0.585780 5_4:+50617683 None:intergenic
GAATTGAGGTTTGACTCGTA+GGG 0.593749 5_4:+50619344 None:intergenic
ACAACAACTTCACCGTCCTA+GGG 0.596633 5_4:-50619280 Msa0856220:CDS
GGAGGCACGGTCCAGCTCGA+CGG 0.596985 5_4:-50619134 Msa0856220:CDS
ACGCGCTGTCACACGTGCCG+GGG 0.598633 5_4:-50619177 Msa0856220:CDS
AGCAAGATTTGTAGGAGACA+AGG 0.603122 5_4:-50617903 Msa0856220:intron
ATGTGTCGCGACTCGTGCGG+AGG 0.615055 5_4:-50619152 Msa0856220:CDS
GGCTTCTGGATTATAGCCCA+CGG 0.615132 5_4:+50619034 None:intergenic
GGACGGTTGAAAAGTGATTG+TGG 0.615271 5_4:-50618864 Msa0856220:CDS
TGTTATGCAAGATATTCTAC+CGG 0.616220 5_4:-50618807 Msa0856220:CDS
GATTGTGTTGTAGAAGCGAT+CGG 0.619387 5_4:-50618885 Msa0856220:CDS
CGAGTCGCGACACATGTCCC+CGG 0.621791 5_4:+50619160 None:intergenic
ACTCATAGAGGAAGTCCATA+CGG 0.623640 5_4:+50617665 None:intergenic
TATGCAAGATATTCTACCGG+TGG 0.627330 5_4:-50618804 Msa0856220:CDS
CATGATACGTCTAAGGCCCA+TGG 0.629745 5_4:-50618777 Msa0856220:intron
ATGGGCCTTAGACGTATCAT+GGG 0.630265 5_4:+50618779 None:intergenic
TCTGGATTATAGCCCACGGA+AGG 0.644583 5_4:+50619038 None:intergenic
ATACGGTGAGATTTGATCAG+TGG 0.646510 5_4:+50617682 None:intergenic
AGGCACAATCCGGCATAGCG+AGG 0.647450 5_4:+50619210 None:intergenic
TGCAAGATATTCTACCGGTG+GGG 0.653008 5_4:-50618802 Msa0856220:CDS
AATGAAAACTTTGAACAATG+GGG 0.657828 5_4:+50619594 None:intergenic
TATGGCCTCTACCAATGCCG+TGG 0.658684 5_4:-50619236 Msa0856220:CDS
CCGGCATAGCGAGGTCACCA+CGG 0.662925 5_4:+50619219 None:intergenic
TTGTTGGGTGGACCCTAGGA+CGG 0.669929 5_4:+50619268 None:intergenic
CTGAGTTGACTAGTGAGGTG+AGG 0.674733 5_4:+50619318 None:intergenic
GACATGTGTCGCGACTCGTG+CGG 0.678683 5_4:-50619155 Msa0856220:CDS
GACAGCGCGTGCGACACAGG+AGG 0.694407 5_4:+50619190 None:intergenic
ACAAACCTCTACCTATACGG+TGG 0.712151 5_4:-50619398 Msa0856220:CDS
TGGTGTTGCCCAGTGTACTG+GGG 0.727512 5_4:-50618931 Msa0856220:CDS
TGTTGCTGAGTTGACTAGTG+AGG 0.747592 5_4:+50619313 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAATTTTGCATTATT+TGG - chr5_4:50619668-50619687 Msa0856220:five_prime_UTR 10.0%
!! TATGTTATATTATATGCATA+TGG + chr5_4:50617485-50617504 None:intergenic 15.0%
!! TGTTGAAATAATAAAACATT+GGG + chr5_4:50618622-50618641 None:intergenic 15.0%
!! ATGTTGAAATAATAAAACAT+TGG + chr5_4:50618623-50618642 None:intergenic 15.0%
!! TATTTACTTGTGAAAATATT+AGG - chr5_4:50618699-50618718 Msa0856220:intron 15.0%
!! ATTTACTTGTGAAAATATTA+GGG - chr5_4:50618700-50618719 Msa0856220:intron 15.0%
!! TGAATTGATTATATTAGTTA+AGG + chr5_4:50619190-50619209 None:intergenic 15.0%
!! AAATTAAAACATATAACCAT+TGG - chr5_4:50619219-50619238 Msa0856220:CDS 15.0%
!! TTTAAATTTGAAAGAGAAAA+AGG + chr5_4:50619428-50619447 None:intergenic 15.0%
!! TATGTTATATTATATGCATA+TGG + chr5_4:50617485-50617504 None:intergenic 15.0%
!! TGTTGAAATAATAAAACATT+GGG + chr5_4:50618622-50618641 None:intergenic 15.0%
!! ATGTTGAAATAATAAAACAT+TGG + chr5_4:50618623-50618642 None:intergenic 15.0%
!! TATTTACTTGTGAAAATATT+AGG - chr5_4:50618699-50618718 Msa0856220:intron 15.0%
!! ATTTACTTGTGAAAATATTA+GGG - chr5_4:50618700-50618719 Msa0856220:intron 15.0%
!! TGAATTGATTATATTAGTTA+AGG + chr5_4:50619190-50619209 None:intergenic 15.0%
!! AAATTAAAACATATAACCAT+TGG - chr5_4:50619219-50619238 Msa0856220:CDS 15.0%
!! TTTAAATTTGAAAGAGAAAA+AGG + chr5_4:50619428-50619447 None:intergenic 15.0%
!!! TTTTTTGTTGTTGTTGTTAT+TGG + chr5_4:50617531-50617550 None:intergenic 20.0%
!! ATAACAACAACAACAAAAAA+TGG - chr5_4:50617531-50617550 Msa0856220:three_prime_UTR 20.0%
!!! CTACTTCTTTTTTAATCAAA+AGG - chr5_4:50618309-50618328 Msa0856220:intron 20.0%
!!! TTTTCCTTTACTTTATGTTA+GGG - chr5_4:50618483-50618502 Msa0856220:intron 20.0%
!! CAATGTTTACAAATTACAAT+TGG + chr5_4:50618547-50618566 None:intergenic 20.0%
!!! TTTTTTCTTACAAATCTCTT+TGG + chr5_4:50618649-50618668 None:intergenic 20.0%
!! AAGAGATTTGTAAGAAAAAA+AGG - chr5_4:50618649-50618668 Msa0856220:intron 20.0%
!!! TTTAAAGTTGAATTCAAAAG+AGG - chr5_4:50619442-50619461 Msa0856220:CDS 20.0%
!! TTTGAATACAAAAAGAAAAG+AGG - chr5_4:50619519-50619538 Msa0856220:five_prime_UTR 20.0%
!!! TTTTTTGTTGTTGTTGTTAT+TGG + chr5_4:50617531-50617550 None:intergenic 20.0%
!! ATAACAACAACAACAAAAAA+TGG - chr5_4:50617531-50617550 Msa0856220:three_prime_UTR 20.0%
!!! CTACTTCTTTTTTAATCAAA+AGG - chr5_4:50618309-50618328 Msa0856220:intron 20.0%
!!! TTTTCCTTTACTTTATGTTA+GGG - chr5_4:50618483-50618502 Msa0856220:intron 20.0%
!! CAATGTTTACAAATTACAAT+TGG + chr5_4:50618547-50618566 None:intergenic 20.0%
!!! TTTTTTCTTACAAATCTCTT+TGG + chr5_4:50618649-50618668 None:intergenic 20.0%
!! AAGAGATTTGTAAGAAAAAA+AGG - chr5_4:50618649-50618668 Msa0856220:intron 20.0%
!!! TTTAAAGTTGAATTCAAAAG+AGG - chr5_4:50619442-50619461 Msa0856220:CDS 20.0%
!! TTTGAATACAAAAAGAAAAG+AGG - chr5_4:50619519-50619538 Msa0856220:five_prime_UTR 20.0%
! AATGAAAACTTTGAACAATG+GGG + chr5_4:50617429-50617448 None:intergenic 25.0%
! GAATGAAAACTTTGAACAAT+GGG + chr5_4:50617430-50617449 None:intergenic 25.0%
! AGAATGAAAACTTTGAACAA+TGG + chr5_4:50617431-50617450 None:intergenic 25.0%
! TTTCATTCTAAGCAAATCAT+AGG - chr5_4:50617442-50617461 Msa0856220:three_prime_UTR 25.0%
! TTCATTCTAAGCAAATCATA+GGG - chr5_4:50617443-50617462 Msa0856220:three_prime_UTR 25.0%
! TTCTGATAAGGAAAGAAAAA+GGG + chr5_4:50617593-50617612 None:intergenic 25.0%
! ATTCTGATAAGGAAAGAAAA+AGG + chr5_4:50617594-50617613 None:intergenic 25.0%
!!! TATGACAATGCTACTTTTTT+AGG - chr5_4:50617922-50617941 Msa0856220:CDS 25.0%
!!! AATGTTTTGTTGAAAAAGTG+TGG - chr5_4:50617958-50617977 Msa0856220:CDS 25.0%
!!! ATGTTTTGTTGAAAAAGTGT+GGG - chr5_4:50617959-50617978 Msa0856220:CDS 25.0%
! AGGAATTAATTGAAGAGTAA+TGG - chr5_4:50618329-50618348 Msa0856220:intron 25.0%
!!! TTTCAAGTATGTTTTTCTTC+CGG - chr5_4:50618440-50618459 Msa0856220:intron 25.0%
!!! ATGACTTTTTTTCTTTTGAC+CGG + chr5_4:50618462-50618481 None:intergenic 25.0%
!! GTTTTCCTTTACTTTATGTT+AGG - chr5_4:50618482-50618501 Msa0856220:intron 25.0%
! TTTACAAATTACAATTGGCA+TGG + chr5_4:50618542-50618561 None:intergenic 25.0%
!! GTAATTTGTAAACATTGACT+TGG - chr5_4:50618550-50618569 Msa0856220:intron 25.0%
!!! AATTACCTGACTTATTTTGT+TGG - chr5_4:50618991-50619010 Msa0856220:CDS 25.0%
! AAGAGATTTGCATTAATCAT+TGG - chr5_4:50619048-50619067 Msa0856220:CDS 25.0%
!!! TTAATCATTGGTTTATTAGC+AGG - chr5_4:50619060-50619079 Msa0856220:CDS 25.0%
!! ATTTAACTTATTTACCTGCA+CGG + chr5_4:50619292-50619311 None:intergenic 25.0%
! AATGAAAACTTTGAACAATG+GGG + chr5_4:50617429-50617448 None:intergenic 25.0%
! GAATGAAAACTTTGAACAAT+GGG + chr5_4:50617430-50617449 None:intergenic 25.0%
! AGAATGAAAACTTTGAACAA+TGG + chr5_4:50617431-50617450 None:intergenic 25.0%
! TTTCATTCTAAGCAAATCAT+AGG - chr5_4:50617442-50617461 Msa0856220:three_prime_UTR 25.0%
! TTCATTCTAAGCAAATCATA+GGG - chr5_4:50617443-50617462 Msa0856220:three_prime_UTR 25.0%
! TTCTGATAAGGAAAGAAAAA+GGG + chr5_4:50617593-50617612 None:intergenic 25.0%
! ATTCTGATAAGGAAAGAAAA+AGG + chr5_4:50617594-50617613 None:intergenic 25.0%
!!! TATGACAATGCTACTTTTTT+AGG - chr5_4:50617922-50617941 Msa0856220:CDS 25.0%
!!! AATGTTTTGTTGAAAAAGTG+TGG - chr5_4:50617958-50617977 Msa0856220:CDS 25.0%
!!! ATGTTTTGTTGAAAAAGTGT+GGG - chr5_4:50617959-50617978 Msa0856220:CDS 25.0%
! AGGAATTAATTGAAGAGTAA+TGG - chr5_4:50618329-50618348 Msa0856220:intron 25.0%
!!! TTTCAAGTATGTTTTTCTTC+CGG - chr5_4:50618440-50618459 Msa0856220:intron 25.0%
!!! ATGACTTTTTTTCTTTTGAC+CGG + chr5_4:50618462-50618481 None:intergenic 25.0%
!! GTTTTCCTTTACTTTATGTT+AGG - chr5_4:50618482-50618501 Msa0856220:intron 25.0%
! TTTACAAATTACAATTGGCA+TGG + chr5_4:50618542-50618561 None:intergenic 25.0%
!! GTAATTTGTAAACATTGACT+TGG - chr5_4:50618550-50618569 Msa0856220:intron 25.0%
!!! AATTACCTGACTTATTTTGT+TGG - chr5_4:50618991-50619010 Msa0856220:CDS 25.0%
! AAGAGATTTGCATTAATCAT+TGG - chr5_4:50619048-50619067 Msa0856220:CDS 25.0%
!!! TTAATCATTGGTTTATTAGC+AGG - chr5_4:50619060-50619079 Msa0856220:CDS 25.0%
!! ATTTAACTTATTTACCTGCA+CGG + chr5_4:50619292-50619311 None:intergenic 25.0%
AGATTAAAGACCTATGAGTA+TGG + chr5_4:50617406-50617425 None:intergenic 30.0%
! AGATTATGGAGATTTGTTCT+TGG - chr5_4:50618185-50618204 Msa0856220:intron 30.0%
! GATTATGGAGATTTGTTCTT+GGG - chr5_4:50618186-50618205 Msa0856220:intron 30.0%
TGTTATGCAAGATATTCTAC+CGG - chr5_4:50618213-50618232 Msa0856220:intron 30.0%
! AATTGAAGAGTAATGGAGAT+TGG - chr5_4:50618336-50618355 Msa0856220:intron 30.0%
! ATTGAAGAGTAATGGAGATT+GGG - chr5_4:50618337-50618356 Msa0856220:intron 30.0%
ACACGTGATCAAAATTCAAA+GGG + chr5_4:50618965-50618984 None:intergenic 30.0%
AGCAATGAGAATAACAAGTA+TGG + chr5_4:50619091-50619110 None:intergenic 30.0%
CAAGATATTGCTTAATCCAA+TGG + chr5_4:50619238-50619257 None:intergenic 30.0%
!!! TCTTTTTTGTATCCTCTTCA+AGG + chr5_4:50619476-50619495 None:intergenic 30.0%
ACAAAAAAGAATGTGCAAGA+TGG - chr5_4:50619486-50619505 Msa0856220:exon 30.0%
CAAAAAAGAATGTGCAAGAT+GGG - chr5_4:50619487-50619506 Msa0856220:exon 30.0%
AAAAAAGAATGTGCAAGATG+GGG - chr5_4:50619488-50619507 Msa0856220:exon 30.0%
AATTGCACAACTTTGTAAAG+TGG + chr5_4:50619585-50619604 None:intergenic 30.0%
AGATTAAAGACCTATGAGTA+TGG + chr5_4:50617406-50617425 None:intergenic 30.0%
! AGATTATGGAGATTTGTTCT+TGG - chr5_4:50618185-50618204 Msa0856220:intron 30.0%
! GATTATGGAGATTTGTTCTT+GGG - chr5_4:50618186-50618205 Msa0856220:intron 30.0%
TGTTATGCAAGATATTCTAC+CGG - chr5_4:50618213-50618232 Msa0856220:intron 30.0%
! AATTGAAGAGTAATGGAGAT+TGG - chr5_4:50618336-50618355 Msa0856220:intron 30.0%
! ATTGAAGAGTAATGGAGATT+GGG - chr5_4:50618337-50618356 Msa0856220:intron 30.0%
ACACGTGATCAAAATTCAAA+GGG + chr5_4:50618965-50618984 None:intergenic 30.0%
AGCAATGAGAATAACAAGTA+TGG + chr5_4:50619091-50619110 None:intergenic 30.0%
CAAGATATTGCTTAATCCAA+TGG + chr5_4:50619238-50619257 None:intergenic 30.0%
!!! TCTTTTTTGTATCCTCTTCA+AGG + chr5_4:50619476-50619495 None:intergenic 30.0%
ACAAAAAAGAATGTGCAAGA+TGG - chr5_4:50619486-50619505 Msa0856220:exon 30.0%
CAAAAAAGAATGTGCAAGAT+GGG - chr5_4:50619487-50619506 Msa0856220:exon 30.0%
AAAAAAGAATGTGCAAGATG+GGG - chr5_4:50619488-50619507 Msa0856220:exon 30.0%
AATTGCACAACTTTGTAAAG+TGG + chr5_4:50619585-50619604 None:intergenic 30.0%
TATGAGTATGGAACTGAAGT+TGG + chr5_4:50617394-50617413 None:intergenic 35.0%
AACTTCAGTTCCATACTCAT+AGG - chr5_4:50617393-50617412 Msa0856220:three_prime_UTR 35.0%
TGATAAGGAAAGAAAAAGGG+TGG + chr5_4:50617590-50617609 None:intergenic 35.0%
!! TGTGGTTGATGATTCTGATA+AGG + chr5_4:50617605-50617624 None:intergenic 35.0%
! ATAGATTATGTCTTGTTGGG+TGG + chr5_4:50617767-50617786 None:intergenic 35.0%
ACCCAACAAGACATAATCTA+TGG - chr5_4:50617766-50617785 Msa0856220:intron 35.0%
! GCCATAGATTATGTCTTGTT+GGG + chr5_4:50617770-50617789 None:intergenic 35.0%
!!! CAATGCTACTTTTTTAGGTG+TGG - chr5_4:50617927-50617946 Msa0856220:CDS 35.0%
AAAAGAAGTAGAAGCAGCAA+AGG + chr5_4:50618300-50618319 None:intergenic 35.0%
TGTGCCCTAACATAAAGTAA+AGG + chr5_4:50618490-50618509 None:intergenic 35.0%
!! AAACATTGACTTGGAGAATG+TGG - chr5_4:50618559-50618578 Msa0856220:intron 35.0%
CACACGTGATCAAAATTCAA+AGG + chr5_4:50618966-50618985 None:intergenic 35.0%
!! CTTTGAATTTTGATCACGTG+TGG - chr5_4:50618964-50618983 Msa0856220:CDS 35.0%
!!! ACCTGACTTATTTTGTTGGA+TGG - chr5_4:50618995-50619014 Msa0856220:CDS 35.0%
CTTTCTTGAGCAAGATTTGT+AGG - chr5_4:50619109-50619128 Msa0856220:CDS 35.0%
GAGACAAGGTAAGTAGTATT+AGG - chr5_4:50619131-50619150 Msa0856220:CDS 35.0%
ATTAAGTTTGTGACGCTTAG+TGG - chr5_4:50619310-50619329 Msa0856220:CDS 35.0%
AGAACATCATGAAGCAAAAG+AGG + chr5_4:50619391-50619410 None:intergenic 35.0%
CACAACTTTGTAAAGTGGAA+AGG + chr5_4:50619580-50619599 None:intergenic 35.0%
TATGAGTATGGAACTGAAGT+TGG + chr5_4:50617394-50617413 None:intergenic 35.0%
AACTTCAGTTCCATACTCAT+AGG - chr5_4:50617393-50617412 Msa0856220:three_prime_UTR 35.0%
TGATAAGGAAAGAAAAAGGG+TGG + chr5_4:50617590-50617609 None:intergenic 35.0%
!! TGTGGTTGATGATTCTGATA+AGG + chr5_4:50617605-50617624 None:intergenic 35.0%
! ATAGATTATGTCTTGTTGGG+TGG + chr5_4:50617767-50617786 None:intergenic 35.0%
ACCCAACAAGACATAATCTA+TGG - chr5_4:50617766-50617785 Msa0856220:intron 35.0%
! GCCATAGATTATGTCTTGTT+GGG + chr5_4:50617770-50617789 None:intergenic 35.0%
!!! CAATGCTACTTTTTTAGGTG+TGG - chr5_4:50617927-50617946 Msa0856220:CDS 35.0%
AAAAGAAGTAGAAGCAGCAA+AGG + chr5_4:50618300-50618319 None:intergenic 35.0%
TGTGCCCTAACATAAAGTAA+AGG + chr5_4:50618490-50618509 None:intergenic 35.0%
!! AAACATTGACTTGGAGAATG+TGG - chr5_4:50618559-50618578 Msa0856220:intron 35.0%
CACACGTGATCAAAATTCAA+AGG + chr5_4:50618966-50618985 None:intergenic 35.0%
!! CTTTGAATTTTGATCACGTG+TGG - chr5_4:50618964-50618983 Msa0856220:CDS 35.0%
!!! ACCTGACTTATTTTGTTGGA+TGG - chr5_4:50618995-50619014 Msa0856220:CDS 35.0%
CTTTCTTGAGCAAGATTTGT+AGG - chr5_4:50619109-50619128 Msa0856220:CDS 35.0%
GAGACAAGGTAAGTAGTATT+AGG - chr5_4:50619131-50619150 Msa0856220:CDS 35.0%
ATTAAGTTTGTGACGCTTAG+TGG - chr5_4:50619310-50619329 Msa0856220:CDS 35.0%
AGAACATCATGAAGCAAAAG+AGG + chr5_4:50619391-50619410 None:intergenic 35.0%
CACAACTTTGTAAAGTGGAA+AGG + chr5_4:50619580-50619599 None:intergenic 35.0%
ACCACAAACCTCTACCTATA+CGG - chr5_4:50617619-50617638 Msa0856220:three_prime_UTR 40.0%
! GAATTGAGGTTTGACTCGTA+GGG + chr5_4:50617679-50617698 None:intergenic 40.0%
! TGAATTGAGGTTTGACTCGT+AGG + chr5_4:50617680-50617699 None:intergenic 40.0%
GGCCATAGATTATGTCTTGT+TGG + chr5_4:50617771-50617790 None:intergenic 40.0%
!!! TGCTACTTTTTTAGGTGTGG+AGG - chr5_4:50617930-50617949 Msa0856220:CDS 40.0%
! TGTACTGGGGATCTTAGTTT+TGG - chr5_4:50618102-50618121 Msa0856220:intron 40.0%
!! GTACTGGGGATCTTAGTTTT+GGG - chr5_4:50618103-50618122 Msa0856220:intron 40.0%
!!! TACTGGGGATCTTAGTTTTG+GGG - chr5_4:50618104-50618123 Msa0856220:intron 40.0%
GATTGTGTTGTAGAAGCGAT+CGG - chr5_4:50618135-50618154 Msa0856220:intron 40.0%
GATTGTGGTACTGCAGATTA+TGG - chr5_4:50618171-50618190 Msa0856220:intron 40.0%
TATGCAAGATATTCTACCGG+TGG - chr5_4:50618216-50618235 Msa0856220:intron 40.0%
ATGCAAGATATTCTACCGGT+GGG - chr5_4:50618217-50618236 Msa0856220:intron 40.0%
CATGAGAAAGAACCCAAGAT+GGG + chr5_4:50618274-50618293 None:intergenic 40.0%
ACATGAGAAAGAACCCAAGA+TGG + chr5_4:50618275-50618294 None:intergenic 40.0%
!!! ACAGCGTTTGTCGTTTTTTC+AGG - chr5_4:50618507-50618526 Msa0856220:intron 40.0%
GCCATCCAACAAAATAAGTC+AGG + chr5_4:50618999-50619018 None:intergenic 40.0%
!! TATTTTGTTGGATGGCTTGC+AGG - chr5_4:50619003-50619022 Msa0856220:CDS 40.0%
GCAGGAAAATTGGGTATAGT+AGG - chr5_4:50619021-50619040 Msa0856220:CDS 40.0%
AGCAAGATTTGTAGGAGACA+AGG - chr5_4:50619117-50619136 Msa0856220:CDS 40.0%
TACGGTGAGATTTGATCAGT+GGG + chr5_4:50619340-50619359 None:intergenic 40.0%
ATACGGTGAGATTTGATCAG+TGG + chr5_4:50619341-50619360 None:intergenic 40.0%
ACTGATCAAATCTCACCGTA+TGG - chr5_4:50619340-50619359 Msa0856220:CDS 40.0%
ACTCATAGAGGAAGTCCATA+CGG + chr5_4:50619358-50619377 None:intergenic 40.0%
ACCACAAACCTCTACCTATA+CGG - chr5_4:50617619-50617638 Msa0856220:three_prime_UTR 40.0%
! GAATTGAGGTTTGACTCGTA+GGG + chr5_4:50617679-50617698 None:intergenic 40.0%
! TGAATTGAGGTTTGACTCGT+AGG + chr5_4:50617680-50617699 None:intergenic 40.0%
GGCCATAGATTATGTCTTGT+TGG + chr5_4:50617771-50617790 None:intergenic 40.0%
!!! TGCTACTTTTTTAGGTGTGG+AGG - chr5_4:50617930-50617949 Msa0856220:CDS 40.0%
! TGTACTGGGGATCTTAGTTT+TGG - chr5_4:50618102-50618121 Msa0856220:intron 40.0%
!! GTACTGGGGATCTTAGTTTT+GGG - chr5_4:50618103-50618122 Msa0856220:intron 40.0%
!!! TACTGGGGATCTTAGTTTTG+GGG - chr5_4:50618104-50618123 Msa0856220:intron 40.0%
GATTGTGTTGTAGAAGCGAT+CGG - chr5_4:50618135-50618154 Msa0856220:intron 40.0%
GATTGTGGTACTGCAGATTA+TGG - chr5_4:50618171-50618190 Msa0856220:intron 40.0%
TATGCAAGATATTCTACCGG+TGG - chr5_4:50618216-50618235 Msa0856220:intron 40.0%
ATGCAAGATATTCTACCGGT+GGG - chr5_4:50618217-50618236 Msa0856220:intron 40.0%
CATGAGAAAGAACCCAAGAT+GGG + chr5_4:50618274-50618293 None:intergenic 40.0%
ACATGAGAAAGAACCCAAGA+TGG + chr5_4:50618275-50618294 None:intergenic 40.0%
!!! ACAGCGTTTGTCGTTTTTTC+AGG - chr5_4:50618507-50618526 Msa0856220:intron 40.0%
GCCATCCAACAAAATAAGTC+AGG + chr5_4:50618999-50619018 None:intergenic 40.0%
!! TATTTTGTTGGATGGCTTGC+AGG - chr5_4:50619003-50619022 Msa0856220:CDS 40.0%
GCAGGAAAATTGGGTATAGT+AGG - chr5_4:50619021-50619040 Msa0856220:CDS 40.0%
AGCAAGATTTGTAGGAGACA+AGG - chr5_4:50619117-50619136 Msa0856220:CDS 40.0%
TACGGTGAGATTTGATCAGT+GGG + chr5_4:50619340-50619359 None:intergenic 40.0%
ATACGGTGAGATTTGATCAG+TGG + chr5_4:50619341-50619360 None:intergenic 40.0%
ACTGATCAAATCTCACCGTA+TGG - chr5_4:50619340-50619359 Msa0856220:CDS 40.0%
ACTCATAGAGGAAGTCCATA+CGG + chr5_4:50619358-50619377 None:intergenic 40.0%
ACCGTATAGGTAGAGGTTTG+TGG + chr5_4:50617623-50617642 None:intergenic 45.0%
ACAAACCTCTACCTATACGG+TGG - chr5_4:50617622-50617641 Msa0856220:three_prime_UTR 45.0%
! TTTGACTCGTAGGGTGAGTT+TGG + chr5_4:50617670-50617689 None:intergenic 45.0%
! TGTTGCTGAGTTGACTAGTG+AGG + chr5_4:50617710-50617729 None:intergenic 45.0%
TAGGACGGTGAAGTTGTTGT+AGG + chr5_4:50617740-50617759 None:intergenic 45.0%
TACAACAACTTCACCGTCCT+AGG - chr5_4:50617739-50617758 Msa0856220:intron 45.0%
ACAACAACTTCACCGTCCTA+GGG - chr5_4:50617740-50617759 Msa0856220:intron 45.0%
GGCTATAATCCAGAAGCCAT+GGG - chr5_4:50617991-50618010 Msa0856220:CDS 45.0%
ACTAAGATCCCCAGTACACT+GGG + chr5_4:50618100-50618119 None:intergenic 45.0%
AACTAAGATCCCCAGTACAC+TGG + chr5_4:50618101-50618120 None:intergenic 45.0%
GGACGGTTGAAAAGTGATTG+TGG - chr5_4:50618156-50618175 Msa0856220:intron 45.0%
TGCAAGATATTCTACCGGTG+GGG - chr5_4:50618218-50618237 Msa0856220:intron 45.0%
ATGGGCCTTAGACGTATCAT+GGG + chr5_4:50618244-50618263 None:intergenic 45.0%
! GAAGAGTAATGGAGATTGGG+TGG - chr5_4:50618340-50618359 Msa0856220:intron 45.0%
! TGGATGGCTTGCAGGAAAAT+TGG - chr5_4:50619011-50619030 Msa0856220:CDS 45.0%
! GGATGGCTTGCAGGAAAATT+GGG - chr5_4:50619012-50619031 Msa0856220:CDS 45.0%
CTTGTATCTTCTTTCCGTGC+AGG - chr5_4:50619275-50619294 Msa0856220:CDS 45.0%
GGCACAAAAGCAACTCATAG+AGG + chr5_4:50619370-50619389 None:intergenic 45.0%
GAGGACTTTGAACCTTGAAG+AGG - chr5_4:50619461-50619480 Msa0856220:CDS 45.0%
GGAAAGCAGCTAGAATCTCT+TGG + chr5_4:50619559-50619578 None:intergenic 45.0%
ACCGTATAGGTAGAGGTTTG+TGG + chr5_4:50617623-50617642 None:intergenic 45.0%
ACAAACCTCTACCTATACGG+TGG - chr5_4:50617622-50617641 Msa0856220:three_prime_UTR 45.0%
! TTTGACTCGTAGGGTGAGTT+TGG + chr5_4:50617670-50617689 None:intergenic 45.0%
! TGTTGCTGAGTTGACTAGTG+AGG + chr5_4:50617710-50617729 None:intergenic 45.0%
TAGGACGGTGAAGTTGTTGT+AGG + chr5_4:50617740-50617759 None:intergenic 45.0%
TACAACAACTTCACCGTCCT+AGG - chr5_4:50617739-50617758 Msa0856220:intron 45.0%
ACAACAACTTCACCGTCCTA+GGG - chr5_4:50617740-50617759 Msa0856220:intron 45.0%
GGCTATAATCCAGAAGCCAT+GGG - chr5_4:50617991-50618010 Msa0856220:CDS 45.0%
ACTAAGATCCCCAGTACACT+GGG + chr5_4:50618100-50618119 None:intergenic 45.0%
AACTAAGATCCCCAGTACAC+TGG + chr5_4:50618101-50618120 None:intergenic 45.0%
GGACGGTTGAAAAGTGATTG+TGG - chr5_4:50618156-50618175 Msa0856220:intron 45.0%
TGCAAGATATTCTACCGGTG+GGG - chr5_4:50618218-50618237 Msa0856220:intron 45.0%
ATGGGCCTTAGACGTATCAT+GGG + chr5_4:50618244-50618263 None:intergenic 45.0%
! GAAGAGTAATGGAGATTGGG+TGG - chr5_4:50618340-50618359 Msa0856220:intron 45.0%
! TGGATGGCTTGCAGGAAAAT+TGG - chr5_4:50619011-50619030 Msa0856220:CDS 45.0%
! GGATGGCTTGCAGGAAAATT+GGG - chr5_4:50619012-50619031 Msa0856220:CDS 45.0%
CTTGTATCTTCTTTCCGTGC+AGG - chr5_4:50619275-50619294 Msa0856220:CDS 45.0%
GGCACAAAAGCAACTCATAG+AGG + chr5_4:50619370-50619389 None:intergenic 45.0%
GAGGACTTTGAACCTTGAAG+AGG - chr5_4:50619461-50619480 Msa0856220:CDS 45.0%
GGAAAGCAGCTAGAATCTCT+TGG + chr5_4:50619559-50619578 None:intergenic 45.0%
TGCAACCACCGTATAGGTAG+AGG + chr5_4:50617630-50617649 None:intergenic 50.0%
GTTGTGTGCAACCACCGTAT+AGG + chr5_4:50617636-50617655 None:intergenic 50.0%
GTGAGGTGAGGAGTGAATTG+AGG + chr5_4:50617693-50617712 None:intergenic 50.0%
! CTGAGTTGACTAGTGAGGTG+AGG + chr5_4:50617705-50617724 None:intergenic 50.0%
! AAAAAGTGTGGGCCTTCCGT+GGG - chr5_4:50617970-50617989 Msa0856220:CDS 50.0%
TCTGGATTATAGCCCACGGA+AGG + chr5_4:50617985-50618004 None:intergenic 50.0%
GGCTTCTGGATTATAGCCCA+CGG + chr5_4:50617989-50618008 None:intergenic 50.0%
GGGCTATAATCCAGAAGCCA+TGG - chr5_4:50617990-50618009 Msa0856220:CDS 50.0%
TCAAGAGATGCTGTGCTTGG+TGG - chr5_4:50618015-50618034 Msa0856220:intron 50.0%
CAAGAGATGCTGTGCTTGGT+GGG - chr5_4:50618016-50618035 Msa0856220:intron 50.0%
!!! TTAGGTGGGCCTTTTAGGGT+TGG - chr5_4:50618048-50618067 Msa0856220:intron 50.0%
!!! GCCTTTTAGGGTTGGTGGTT+CGG - chr5_4:50618056-50618075 Msa0856220:intron 50.0%
!!! CCTTTTAGGGTTGGTGGTTC+GGG - chr5_4:50618057-50618076 Msa0856220:intron 50.0%
GTGTTGTAGAAGCGATCGGA+CGG - chr5_4:50618139-50618158 Msa0856220:intron 50.0%
CATGGGCCTTAGACGTATCA+TGG + chr5_4:50618245-50618264 None:intergenic 50.0%
! CATGATACGTCTAAGGCCCA+TGG - chr5_4:50618243-50618262 Msa0856220:intron 50.0%
! CCCAAGATGGGCTTTACCAT+GGG + chr5_4:50618262-50618281 None:intergenic 50.0%
CCCATGGTAAAGCCCATCTT+GGG - chr5_4:50618259-50618278 Msa0856220:intron 50.0%
! ACCCAAGATGGGCTTTACCA+TGG + chr5_4:50618263-50618282 None:intergenic 50.0%
! GAGTAATGGAGATTGGGTGG+TGG - chr5_4:50618343-50618362 Msa0856220:intron 50.0%
TGCAACCACCGTATAGGTAG+AGG + chr5_4:50617630-50617649 None:intergenic 50.0%
GTTGTGTGCAACCACCGTAT+AGG + chr5_4:50617636-50617655 None:intergenic 50.0%
GTGAGGTGAGGAGTGAATTG+AGG + chr5_4:50617693-50617712 None:intergenic 50.0%
! CTGAGTTGACTAGTGAGGTG+AGG + chr5_4:50617705-50617724 None:intergenic 50.0%
! AAAAAGTGTGGGCCTTCCGT+GGG - chr5_4:50617970-50617989 Msa0856220:CDS 50.0%
TCTGGATTATAGCCCACGGA+AGG + chr5_4:50617985-50618004 None:intergenic 50.0%
GGCTTCTGGATTATAGCCCA+CGG + chr5_4:50617989-50618008 None:intergenic 50.0%
GGGCTATAATCCAGAAGCCA+TGG - chr5_4:50617990-50618009 Msa0856220:CDS 50.0%
TCAAGAGATGCTGTGCTTGG+TGG - chr5_4:50618015-50618034 Msa0856220:intron 50.0%
CAAGAGATGCTGTGCTTGGT+GGG - chr5_4:50618016-50618035 Msa0856220:intron 50.0%
!!! TTAGGTGGGCCTTTTAGGGT+TGG - chr5_4:50618048-50618067 Msa0856220:intron 50.0%
!!! GCCTTTTAGGGTTGGTGGTT+CGG - chr5_4:50618056-50618075 Msa0856220:intron 50.0%
!!! CCTTTTAGGGTTGGTGGTTC+GGG - chr5_4:50618057-50618076 Msa0856220:intron 50.0%
GTGTTGTAGAAGCGATCGGA+CGG - chr5_4:50618139-50618158 Msa0856220:intron 50.0%
CATGGGCCTTAGACGTATCA+TGG + chr5_4:50618245-50618264 None:intergenic 50.0%
! CATGATACGTCTAAGGCCCA+TGG - chr5_4:50618243-50618262 Msa0856220:intron 50.0%
! CCCAAGATGGGCTTTACCAT+GGG + chr5_4:50618262-50618281 None:intergenic 50.0%
CCCATGGTAAAGCCCATCTT+GGG - chr5_4:50618259-50618278 Msa0856220:intron 50.0%
! ACCCAAGATGGGCTTTACCA+TGG + chr5_4:50618263-50618282 None:intergenic 50.0%
! GAGTAATGGAGATTGGGTGG+TGG - chr5_4:50618343-50618362 Msa0856220:intron 50.0%
TTGTTGGGTGGACCCTAGGA+CGG + chr5_4:50617755-50617774 None:intergenic 55.0%
! TGTCTTGTTGGGTGGACCCT+AGG + chr5_4:50617759-50617778 None:intergenic 55.0%
TATGGCCTCTACCAATGCCG+TGG - chr5_4:50617784-50617803 Msa0856220:intron 55.0%
TCACCAAACAACCGTCGAGC+TGG + chr5_4:50617900-50617919 None:intergenic 55.0%
! GAAAAAGTGTGGGCCTTCCG+TGG - chr5_4:50617969-50617988 Msa0856220:CDS 55.0%
TCTCTTGAGCCCATGGCTTC+TGG + chr5_4:50618003-50618022 None:intergenic 55.0%
CACAGCATCTCTTGAGCCCA+TGG + chr5_4:50618010-50618029 None:intergenic 55.0%
GGCTCAAGAGATGCTGTGCT+TGG - chr5_4:50618012-50618031 Msa0856220:intron 55.0%
! TGGGCTTAGGTGGGCCTTTT+AGG - chr5_4:50618043-50618062 Msa0856220:intron 55.0%
! GGGCTTAGGTGGGCCTTTTA+GGG - chr5_4:50618044-50618063 Msa0856220:intron 55.0%
CCCGAACCACCAACCCTAAA+AGG + chr5_4:50618060-50618079 None:intergenic 55.0%
!! TAGGGTTGGTGGTTCGGGTA+CGG - chr5_4:50618062-50618081 Msa0856220:intron 55.0%
!! GTGGTGTTGCCCAGTGTACT+GGG - chr5_4:50618088-50618107 Msa0856220:intron 55.0%
!! TGGTGTTGCCCAGTGTACTG+GGG - chr5_4:50618089-50618108 Msa0856220:intron 55.0%
TGGGGCCCATGATACGTCTA+AGG - chr5_4:50618236-50618255 Msa0856220:intron 55.0%
GCCCATGGTAAAGCCCATCT+TGG - chr5_4:50618258-50618277 Msa0856220:intron 55.0%
TTGTTGGGTGGACCCTAGGA+CGG + chr5_4:50617755-50617774 None:intergenic 55.0%
! TGTCTTGTTGGGTGGACCCT+AGG + chr5_4:50617759-50617778 None:intergenic 55.0%
TATGGCCTCTACCAATGCCG+TGG - chr5_4:50617784-50617803 Msa0856220:intron 55.0%
TCACCAAACAACCGTCGAGC+TGG + chr5_4:50617900-50617919 None:intergenic 55.0%
! GAAAAAGTGTGGGCCTTCCG+TGG - chr5_4:50617969-50617988 Msa0856220:CDS 55.0%
TCTCTTGAGCCCATGGCTTC+TGG + chr5_4:50618003-50618022 None:intergenic 55.0%
CACAGCATCTCTTGAGCCCA+TGG + chr5_4:50618010-50618029 None:intergenic 55.0%
GGCTCAAGAGATGCTGTGCT+TGG - chr5_4:50618012-50618031 Msa0856220:intron 55.0%
! TGGGCTTAGGTGGGCCTTTT+AGG - chr5_4:50618043-50618062 Msa0856220:intron 55.0%
! GGGCTTAGGTGGGCCTTTTA+GGG - chr5_4:50618044-50618063 Msa0856220:intron 55.0%
CCCGAACCACCAACCCTAAA+AGG + chr5_4:50618060-50618079 None:intergenic 55.0%
!! TAGGGTTGGTGGTTCGGGTA+CGG - chr5_4:50618062-50618081 Msa0856220:intron 55.0%
!! GTGGTGTTGCCCAGTGTACT+GGG - chr5_4:50618088-50618107 Msa0856220:intron 55.0%
!! TGGTGTTGCCCAGTGTACTG+GGG - chr5_4:50618089-50618108 Msa0856220:intron 55.0%
TGGGGCCCATGATACGTCTA+AGG - chr5_4:50618236-50618255 Msa0856220:intron 55.0%
GCCCATGGTAAAGCCCATCT+TGG - chr5_4:50618258-50618277 Msa0856220:intron 55.0%
!! GGTCACCACGGCATTGGTAG+AGG + chr5_4:50617792-50617811 None:intergenic 60.0%
TAGCGAGGTCACCACGGCAT+TGG + chr5_4:50617798-50617817 None:intergenic 60.0%
AGGCACAATCCGGCATAGCG+AGG + chr5_4:50617813-50617832 None:intergenic 60.0%
! GCGACACAGGAGGCACAATC+CGG + chr5_4:50617823-50617842 None:intergenic 60.0%
GACATGTGTCGCGACTCGTG+CGG - chr5_4:50617865-50617884 Msa0856220:intron 60.0%
GGTCCAGCTCGACGGTTGTT+TGG - chr5_4:50617894-50617913 Msa0856220:intron 60.0%
!! TGCTGTGCTTGGTGGGCTTG+TGG - chr5_4:50618023-50618042 Msa0856220:intron 60.0%
!! GCTGTGCTTGGTGGGCTTGT+GGG - chr5_4:50618024-50618043 Msa0856220:intron 60.0%
!! CTTGGTGGGCTTGTGGGCTT+AGG - chr5_4:50618030-50618049 Msa0856220:intron 60.0%
GTGGGCTTGTGGGCTTAGGT+GGG - chr5_4:50618034-50618053 Msa0856220:intron 60.0%
!!! GGTGGGCCTTTTAGGGTTGG+TGG - chr5_4:50618051-50618070 Msa0856220:intron 60.0%
!! CGTGGTGTTGCCCAGTGTAC+TGG - chr5_4:50618087-50618106 Msa0856220:intron 60.0%
AGACGTATCATGGGCCCCAC+CGG + chr5_4:50618235-50618254 None:intergenic 60.0%
!! GGTCACCACGGCATTGGTAG+AGG + chr5_4:50617792-50617811 None:intergenic 60.0%
TAGCGAGGTCACCACGGCAT+TGG + chr5_4:50617798-50617817 None:intergenic 60.0%
AGGCACAATCCGGCATAGCG+AGG + chr5_4:50617813-50617832 None:intergenic 60.0%
! GCGACACAGGAGGCACAATC+CGG + chr5_4:50617823-50617842 None:intergenic 60.0%
GACATGTGTCGCGACTCGTG+CGG - chr5_4:50617865-50617884 Msa0856220:intron 60.0%
GGTCCAGCTCGACGGTTGTT+TGG - chr5_4:50617894-50617913 Msa0856220:intron 60.0%
!! TGCTGTGCTTGGTGGGCTTG+TGG - chr5_4:50618023-50618042 Msa0856220:intron 60.0%
!! GCTGTGCTTGGTGGGCTTGT+GGG - chr5_4:50618024-50618043 Msa0856220:intron 60.0%
!! CTTGGTGGGCTTGTGGGCTT+AGG - chr5_4:50618030-50618049 Msa0856220:intron 60.0%
GTGGGCTTGTGGGCTTAGGT+GGG - chr5_4:50618034-50618053 Msa0856220:intron 60.0%
!!! GGTGGGCCTTTTAGGGTTGG+TGG - chr5_4:50618051-50618070 Msa0856220:intron 60.0%
!! CGTGGTGTTGCCCAGTGTAC+TGG - chr5_4:50618087-50618106 Msa0856220:intron 60.0%
AGACGTATCATGGGCCCCAC+CGG + chr5_4:50618235-50618254 None:intergenic 60.0%
CCGGCATAGCGAGGTCACCA+CGG + chr5_4:50617804-50617823 None:intergenic 65.0%
CCGTGGTGACCTCGCTATGC+CGG - chr5_4:50617801-50617820 Msa0856220:intron 65.0%
TGTGACAGCGCGTGCGACAC+AGG + chr5_4:50617836-50617855 None:intergenic 65.0%
CGAGTCGCGACACATGTCCC+CGG + chr5_4:50617863-50617882 None:intergenic 65.0%
ATGTGTCGCGACTCGTGCGG+AGG - chr5_4:50617868-50617887 Msa0856220:intron 65.0%
! GGTGGGCTTGTGGGCTTAGG+TGG - chr5_4:50618033-50618052 Msa0856220:intron 65.0%
! GGTGGTTCGGGTACGGTACG+TGG - chr5_4:50618069-50618088 Msa0856220:intron 65.0%
CCGGCATAGCGAGGTCACCA+CGG + chr5_4:50617804-50617823 None:intergenic 65.0%
CCGTGGTGACCTCGCTATGC+CGG - chr5_4:50617801-50617820 Msa0856220:intron 65.0%
TGTGACAGCGCGTGCGACAC+AGG + chr5_4:50617836-50617855 None:intergenic 65.0%
CGAGTCGCGACACATGTCCC+CGG + chr5_4:50617863-50617882 None:intergenic 65.0%
ATGTGTCGCGACTCGTGCGG+AGG - chr5_4:50617868-50617887 Msa0856220:intron 65.0%
! GGTGGGCTTGTGGGCTTAGG+TGG - chr5_4:50618033-50618052 Msa0856220:intron 65.0%
! GGTGGTTCGGGTACGGTACG+TGG - chr5_4:50618069-50618088 Msa0856220:intron 65.0%
GACAGCGCGTGCGACACAGG+AGG + chr5_4:50617833-50617852 None:intergenic 70.0%
GCACGCGCTGTCACACGTGC+CGG - chr5_4:50617841-50617860 Msa0856220:intron 70.0%
CACGCGCTGTCACACGTGCC+GGG - chr5_4:50617842-50617861 Msa0856220:intron 70.0%
ACGCGCTGTCACACGTGCCG+GGG - chr5_4:50617843-50617862 Msa0856220:intron 70.0%
TCGCGACTCGTGCGGAGGCA+CGG - chr5_4:50617873-50617892 Msa0856220:intron 70.0%
! GGAGGCACGGTCCAGCTCGA+CGG - chr5_4:50617886-50617905 Msa0856220:intron 70.0%
GACAGCGCGTGCGACACAGG+AGG + chr5_4:50617833-50617852 None:intergenic 70.0%
GCACGCGCTGTCACACGTGC+CGG - chr5_4:50617841-50617860 Msa0856220:intron 70.0%
CACGCGCTGTCACACGTGCC+GGG - chr5_4:50617842-50617861 Msa0856220:intron 70.0%
ACGCGCTGTCACACGTGCCG+GGG - chr5_4:50617843-50617862 Msa0856220:intron 70.0%
TCGCGACTCGTGCGGAGGCA+CGG - chr5_4:50617873-50617892 Msa0856220:intron 70.0%
! GGAGGCACGGTCCAGCTCGA+CGG - chr5_4:50617886-50617905 Msa0856220:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 50617354 50619688 50617354 ID=Msa0856220;Name=Msa0856220
chr5_4 mRNA 50617354 50619688 50617354 ID=Msa0856220-mRNA-1;Parent=Msa0856220;Name=Msa0856220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=196|1|1|1|0.5|0.66|3|384|278
chr5_4 exon 50617354 50617745 50617354 ID=Msa0856220-mRNA-1:exon:15888;Parent=Msa0856220-mRNA-1
chr5_4 exon 50617904 50618017 50617904 ID=Msa0856220-mRNA-1:exon:15887;Parent=Msa0856220-mRNA-1
chr5_4 exon 50618778 50619688 50618778 ID=Msa0856220-mRNA-1:exon:15886;Parent=Msa0856220-mRNA-1
chr5_4 five_prime_UTR 50619493 50619688 50619493 ID=Msa0856220-mRNA-1:five_prime_utr;Parent=Msa0856220-mRNA-1
chr5_4 CDS 50618778 50619492 50618778 ID=Msa0856220-mRNA-1:cds;Parent=Msa0856220-mRNA-1
chr5_4 CDS 50617904 50618017 50617904 ID=Msa0856220-mRNA-1:cds;Parent=Msa0856220-mRNA-1
chr5_4 CDS 50617738 50617745 50617738 ID=Msa0856220-mRNA-1:cds;Parent=Msa0856220-mRNA-1
chr5_4 three_prime_UTR 50617354 50617737 50617354 ID=Msa0856220-mRNA-1:three_prime_utr;Parent=Msa0856220-mRNA-1
Gene Sequence

>Msa0856220

ATGGTGAGATTCTTCAAAATTATCTTTCTTTTTTCTACCACCCTTTTTCTTTCCTTATCAGAATCATCAACCACAAACCTCTACCTATACGGTGGTTGCACACAACAAATGTACACACCAAACTCACCCTACGAGTCAAACCTCAATTCACTCCTCACCTCACTAGTCAACTCAGCAACATACTCATCCTACAACAACTTCACCGTCCTAGGGTCCACCCAACAAGACATAATCTATGGCCTCTACCAATGCCGTGGTGACCTCGCTATGCCGGATTGTGCCTCCTGTGTCGCACGCGCTGTCACACGTGCCGGGGACATGTGTCGCGACTCGTGCGGAGGCACGGTCCAGCTCGACGGTTGTTTGGTGAAGTATGACAATGCTACTTTTTTAGGTGTGGAGGATAAGAATGTTTTGTTGAAAAAGTGTGGGCCTTCCGTGGGCTATAATCCAGAAGCCATGGGCTCAAGAGATGCTGTGCTTGGTGGGCTTGTGGGCTTAGGTGGGCCTTTTAGGGTTGGTGGTTCGGGTACGGTACGTGGTGTTGCCCAGTGTACTGGGGATCTTAGTTTTGGGGAGTGTCAAGATTGTGTTGTAGAAGCGATCGGACGGTTGAAAAGTGATTGTGGTACTGCAGATTATGGAGATTTGTTCTTGGGTAAATGTTATGCAAGATATTCTACCGGTGGGGCCCATGATACGTCTAAGGCCCATGGAAAATTGGGTATAGTAGGTGAAAAGAGATTTGCATTAATCATTGGTTTATTAGCAGGAGCAGCCATACTTGTTATTCTCATTGCTTTCTTGAGCAAGATTTGTAGGAGACAAGGTAAATAA
Protein sequence

>Msa0856220

MVRFFKIIFLFSTTLFLSLSESSTTNLYLYGGCTQQMYTPNSPYESNLNSLLTSLVNSATYSSYNNFTVLGSTQQDIIYGLYQCRGDLAMPDCASCVARAVTRAGDMCRDSCGGTVQLDGCLVKYDNATFLGVEDKNVLLKKCGPSVGYNPEAMGSRDAVLGGLVGLGGPFRVGGSGTVRGVAQCTGDLSFGECQDCVVEAIGRLKSDCGTADYGDLFLGKCYARYSTGGAHDTSKAHGKLGIVGEKRFALIIGLLAGAAILVILIAFLSKICRRQGK*