AlfalfaGEDB | Msa0460900

M. sativa cultivar zhongmu-4 / Msa0460900

KEGG: -
GO: GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460900	XP_003600710.1	96.014	276	11	0	1	276	1	276	0.0	543

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460900	sp\|Q0WPN8\|PDLP7_ARATH	59.574	282	104	5	1	275	9	287	2.40e-106	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460900	G7J9C6	96.014	276	11	0	1	276	1	276	0.0	543

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0063190	Msa0460900	0.852112	5.716458e-61	-8.615850e-47
Msa0134830	Msa0460900	0.806418	8.306920e-50	-8.615850e-47
Msa0237240	Msa0460900	0.800324	1.520030e-48	-8.615850e-47
Msa0367990	Msa0460900	0.861302	1.128500e-63	-8.615850e-47
Msa0460900	Msa0604750	0.806959	6.384910e-50	-8.615850e-47
Msa0460900	Msa0774060	0.817513	3.172069e-52	-8.615850e-47
Msa0460900	Msa0856220	0.814337	1.621603e-51	-8.615850e-47
Msa0460900	Msa1228630	0.822216	2.666667e-53	-8.615850e-47
Msa0460900	Msa1333500	0.838866	2.228899e-57	-8.615850e-47
Msa0460900	Msa1368170	0.800165	1.637665e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460900	MtrunA17_Chr3g0110311	96.014	276	11	0	1	276	1	276	0.0	543
Msa0460900	MtrunA17_Chr5g0434531	64.769	281	91	3	1	276	1	278	3.27e-121	347
Msa0460900	MtrunA17_Chr8g0391511	47.876	259	126	3	25	274	29	287	2.68e-84	254
Msa0460900	MtrunA17_Chr7g0230381	41.985	262	135	10	6	256	16	271	1.60e-56	182
Msa0460900	MtrunA17_Chr7g0262011	27.915	283	193	4	1	275	76	355	1.38e-32	122
Msa0460900	MtrunA17_Chr2g0323011	31.959	194	118	3	42	221	45	238	6.72e-24	97.1
Msa0460900	MtrunA17_Chr2g0322981	29.237	236	149	6	4	221	3	238	1.06e-23	96.7
Msa0460900	MtrunA17_Chr1g0168311	30.142	282	174	8	12	272	8	287	2.71e-23	96.3
Msa0460900	MtrunA17_Chr1g0186151	29.455	275	172	4	16	270	21	293	3.68e-23	96.7
Msa0460900	MtrunA17_Chr1g0190321	27.341	267	173	11	4	252	8	271	9.23e-23	95.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0460900	AT5G37660.1	59.717	283	104	5	1	276	9	288	1.96e-108	316
Msa0460900	AT5G37660.2	59.574	282	104	5	1	275	9	287	2.43e-107	313
Msa0460900	AT2G01660.3	53.287	289	120	10	1	276	1	287	1.59e-93	278
Msa0460900	AT2G01660.1	53.169	284	119	9	1	272	1	282	9.01e-93	276
Msa0460900	AT2G01660.2	54.032	248	99	8	1	238	1	243	2.11e-82	248
Msa0460900	AT1G70690.1	40.614	293	150	7	1	272	1	290	7.58e-67	210
Msa0460900	AT3G60720.1	39.044	251	139	6	28	268	29	275	4.88e-51	169
Msa0460900	AT3G60720.3	39.044	251	139	6	28	268	29	275	5.46e-51	169
Msa0460900	AT3G60720.2	40.385	208	114	4	28	225	29	236	4.44e-44	150
Msa0460900	AT5G43980.1	25.660	265	173	5	27	268	27	290	4.23e-21	90.9

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Find 111 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGCAATATAAGAAGAG+AGG	0.603886	3_3:+58585784	None:intergenic
AACACAGCATCTATCGTACC+CGG	0.565235	3_3:+58587193	None:intergenic
AACCCTAACGACATCGTCTA+CGG	0.507804	3_3:-58587427	Msa0460900:CDS
AACTTTGTTGAGTGGGCAAA+GGG	0.460535	3_3:+58585616	None:intergenic
AAGAAATGTGGGCCTGAAGT+AGG	0.455715	3_3:-58587223	Msa0460900:CDS
AAGACATTTGCCATAATTAT+TGG	0.167670	3_3:-58586162	Msa0460900:CDS
AAGGGAATGGCACAGTGTGT+TGG	0.569824	3_3:-58587115	Msa0460900:CDS
AATAGCAATATAAGAAGAGA+GGG	0.531320	3_3:+58585785	None:intergenic
ACACAGCATCTATCGTACCC+GGG	0.696058	3_3:+58587194	None:intergenic
ACACCGTAGACGATGTCGTT+AGG	0.420935	3_3:+58587424	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATTATGGAGATATGTTCTT+GGG	-	chr3_3:58586291-58586310	Msa0460900:intron	30.0%
ATTATGGAGATATGTTCTTG+GGG	-	chr3_3:58586292-58586311	Msa0460900:intron	30.0%
GAAAAGGCAAAGATAACTTA+AGG	-	chr3_3:58586989-58587008	Msa0460900:CDS	30.0%
TTGAGAAAAGCAATAGAAAG+TGG	-	chr3_3:58587024-58587043	Msa0460900:CDS	30.0%
TGAGAAAAGCAATAGAAAGT+GGG	-	chr3_3:58587025-58587044	Msa0460900:CDS	30.0%
GAGAGAGGAAATTAAAAATG+TGG	+	chr3_3:58587246-58587265	None:intergenic	30.0%
TTCCAAAAGCAAATTTGCAA+TGG	+	chr3_3:58587448-58587467	None:intergenic	30.0%
ATTAGAAAAAGATGCACCAT+TGG	-	chr3_3:58587598-58587617	Msa0460900:CDS	30.0%
GACATCCATGTGAATATAAA+AGG	-	chr3_3:58587620-58587639	Msa0460900:CDS	30.0%
TATAAAAGGCAAAAGGAAAG+AGG	-	chr3_3:58587634-58587653	Msa0460900:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	58585627	58587702	58585627	ID=Msa0460900;Name=Msa0460900
chr3_3	mRNA	58585627	58587702	58585627	ID=Msa0460900-mRNA-1;Parent=Msa0460900;Name=Msa0460900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=43\|1\|1\|1\|1\|1\|3\|324\|276
chr3_3	exon	58585627	58585958	58585627	ID=Msa0460900-mRNA-1:exon:12155;Parent=Msa0460900-mRNA-1
chr3_3	exon	58586094	58586207	58586094	ID=Msa0460900-mRNA-1:exon:12154;Parent=Msa0460900-mRNA-1
chr3_3	exon	58586951	58587702	58586951	ID=Msa0460900-mRNA-1:exon:12153;Parent=Msa0460900-mRNA-1
chr3_3	five_prime_UTR	58587660	58587702	58587660	ID=Msa0460900-mRNA-1:five_prime_utr;Parent=Msa0460900-mRNA-1
chr3_3	CDS	58586951	58587659	58586951	ID=Msa0460900-mRNA-1:cds;Parent=Msa0460900-mRNA-1
chr3_3	CDS	58586094	58586207	58586094	ID=Msa0460900-mRNA-1:cds;Parent=Msa0460900-mRNA-1
chr3_3	CDS	58585951	58585958	58585951	ID=Msa0460900-mRNA-1:cds;Parent=Msa0460900-mRNA-1
chr3_3	three_prime_UTR	58585627	58585950	58585627	ID=Msa0460900-mRNA-1:three_prime_utr;Parent=Msa0460900-mRNA-1

Gene Sequence

>Msa0460900

ATGGTCAAAACAAAAAAATTCCTCTCCCTCTTGATCTTCTCAACTTTCATTCTCCATTCATTTTCCATCTCCACAGACACATTCCTCTACGGTGGGTGCACACAAGAAAAATACACCCCAACCTACGAATCTAACCTAAACTCACTCCTCACATCCCTAATAAACTCAGCAACCTACACATCCTACAACAACTTCACCATCATCTCCTCAAACCCTAACGACATCGTCTACGGTGTCTACCAATGTCGTGGCGACATCTCCATGCCAGACTGCTCCTCCTGCATTGCACGTGCCGTCTCACGCGTTGGTGACATATGTCCTGGCGTGTGCGGCGGCGTAGTGCAATTAGAAGGATGTTATGTGAAGTATGACAATATTAAGTTTTTAGGCATGGAAGATAAAACGATTGTGTTGAAGAAATGTGGGCCTGAAGTAGGGTATGACCCGGGTACGATAGATGCTGTGTTGGGTGGGTTGGCGGGTTCAGGTGGGTTGTTTAGGGTTGGTGGTTCGGGTCAGTTGAAGGGAATGGCACAGTGTGTTGGAGATTTGAGTTTTGTGGAGTGTCAAGATTGTGTTTCAGAGGCAATCCGACGGTTGAGAAATGATTGTCCTTCTGGGGATTATGGAGATATGTTCTTGGGGAAGTGTTATGCAAGGTACTCTACTGGTGGTGCTGGTGGGGCACATGCTTACTCCAAGCCTCATGGTAAATCAGATCACGATGGTGAGAAGACATTTGCCATAATTATTGGATTATTAGCAGTTGTTGCTATACTTATTATTTTTTTTGCTTTCTTGAGAAGGATTTGTGAGGGACAAGGTAAATAA

Protein sequence

>Msa0460900

MVKTKKFLSLLIFSTFILHSFSISTDTFLYGGCTQEKYTPTYESNLNSLLTSLINSATYTSYNNFTIISSNPNDIVYGVYQCRGDISMPDCSSCIARAVSRVGDICPGVCGGVVQLEGCYVKYDNIKFLGMEDKTIVLKKCGPEVGYDPGTIDAVLGGLAGSGGLFRVGGSGQLKGMAQCVGDLSFVECQDCVSEAIRRLRNDCPSGDYGDMFLGKCYARYSTGGAGGAHAYSKPHGKSDHDGEKTFAIIIGLLAVVAILIIFFAFLRRICEGQGK*