AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0460900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460900 MtrunA17_Chr3g0110311 96.014 276 11 0 1 276 1 276 0.0 543
Msa0460900 MtrunA17_Chr5g0434531 64.769 281 91 3 1 276 1 278 3.27e-121 347
Msa0460900 MtrunA17_Chr8g0391511 47.876 259 126 3 25 274 29 287 2.68e-84 254
Msa0460900 MtrunA17_Chr7g0230381 41.985 262 135 10 6 256 16 271 1.60e-56 182
Msa0460900 MtrunA17_Chr7g0262011 27.915 283 193 4 1 275 76 355 1.38e-32 122
Msa0460900 MtrunA17_Chr2g0323011 31.959 194 118 3 42 221 45 238 6.72e-24 97.1
Msa0460900 MtrunA17_Chr2g0322981 29.237 236 149 6 4 221 3 238 1.06e-23 96.7
Msa0460900 MtrunA17_Chr1g0168311 30.142 282 174 8 12 272 8 287 2.71e-23 96.3
Msa0460900 MtrunA17_Chr1g0186151 29.455 275 172 4 16 270 21 293 3.68e-23 96.7
Msa0460900 MtrunA17_Chr1g0190321 27.341 267 173 11 4 252 8 271 9.23e-23 95.1
Msa0460900 MtrunA17_Chr1g0206361 27.099 262 166 8 32 269 40 300 3.88e-20 90.1
Msa0460900 MtrunA17_Chr1g0206331 28.980 245 144 9 5 223 8 248 1.57e-19 88.2
Msa0460900 MtrunA17_Chr1g0205771 24.400 250 168 4 41 271 56 303 1.58e-19 88.2
Msa0460900 MtrunA17_Chr8g0354351 23.077 286 192 6 7 268 9 290 5.30e-19 86.7
Msa0460900 MtrunA17_Chr3g0081031 24.000 275 176 8 4 247 9 281 2.84e-17 81.6
Msa0460900 MtrunA17_Chr7g0234231 26.425 193 126 3 44 222 42 232 3.22e-17 79.0
Msa0460900 MtrunA17_Chr6g0474811 28.926 242 143 7 7 222 8 246 3.57e-17 81.3
Msa0460900 MtrunA17_Chr1g0206351 28.837 215 133 4 27 221 33 247 8.68e-17 80.1
Msa0460900 MtrunA17_Chr6g0474971 30.846 201 118 6 41 221 38 237 1.34e-16 78.2
Msa0460900 MtrunA17_Chr3g0081001 25.941 239 159 4 1 221 1 239 1.40e-16 79.3
Msa0460900 MtrunA17_Chr3g0081011 25.500 200 137 2 34 221 39 238 1.64e-16 79.3
Msa0460900 MtrunA17_Chr6g0475001 28.333 240 148 8 6 221 5 244 1.71e-16 79.3
Msa0460900 MtrunA17_Chr6g0474901 28.856 201 122 5 41 221 38 237 3.09e-16 78.6
Msa0460900 MtrunA17_Chr7g0226901 28.761 226 147 7 9 223 10 232 3.24e-16 76.6
Msa0460900 MtrunA17_Chr6g0474871 28.992 238 143 6 7 221 8 242 3.52e-16 78.6
Msa0460900 MtrunA17_Chr8g0354341 25.701 214 143 3 23 221 27 239 3.89e-16 76.3
Msa0460900 MtrunA17_Chr6g0475091 28.500 200 124 4 41 221 54 253 7.53e-16 77.4
Msa0460900 MtrunA17_Chr5g0428531 26.271 236 149 6 10 223 11 243 7.73e-16 75.9
Msa0460900 MtrunA17_Chr6g0475201 29.876 241 144 8 4 221 5 243 9.36e-16 77.0
Msa0460900 MtrunA17_Chr3g0081051 25.106 235 151 5 10 223 6 236 1.92e-15 74.3
Msa0460900 MtrunA17_Chr8g0354421 28.194 227 136 7 1 204 23 245 5.98e-15 74.7
Msa0460900 MtrunA17_Chr5g0428571 26.263 198 130 3 41 223 45 241 7.64e-15 74.3
Msa0460900 MtrunA17_Chr6g0474861 29.016 193 112 5 27 199 27 214 1.06e-14 73.9
Msa0460900 MtrunA17_Chr5g0428591 25.217 230 154 4 10 222 11 239 1.15e-14 72.4
Msa0460900 MtrunA17_Chr5g0394001 26.939 245 159 6 38 263 41 284 1.47e-14 73.6
Msa0460900 MtrunA17_Chr6g0475121 29.282 181 108 4 60 221 65 244 2.57e-14 72.8
Msa0460900 MtrunA17_Chr8g0354411 28.061 196 122 4 28 204 29 224 1.29e-13 69.7
Msa0460900 MtrunA17_Chr1g0206231 25.868 317 177 12 7 274 8 315 3.83e-13 69.3
Msa0460900 MtrunA17_Chr2g0280381 26.446 242 148 9 2 221 1 234 3.97e-13 67.8
Msa0460900 MtrunA17_Chr3g0082951 36.275 102 61 1 28 125 116 217 1.09e-12 65.9
Msa0460900 MtrunA17_Chr8g0354281 24.000 275 180 8 28 273 29 303 1.19e-12 67.8
Msa0460900 MtrunA17_Chr1g0154311 24.436 266 162 9 41 270 49 311 1.19e-12 67.8
Msa0460900 MtrunA17_Chr4g0058891 30.573 157 95 7 76 223 82 233 1.20e-12 67.8
Msa0460900 MtrunA17_Chr8g0354431 24.554 224 149 6 1 204 1 224 2.87e-12 66.6
Msa0460900 MtrunA17_Chr1g0206201 25.600 250 160 7 7 230 7 256 3.56e-12 65.1
Msa0460900 MtrunA17_Chr1g0206291 25.941 239 150 9 7 221 23 258 5.87e-12 65.5
Msa0460900 MtrunA17_Chr2g0280391 24.852 169 113 3 41 197 50 216 1.15e-11 63.9
Msa0460900 MtrunA17_Chr3g0109411 23.585 212 145 3 27 222 28 238 1.95e-11 63.9
Msa0460900 MtrunA17_Chr6g0475111 26.667 240 155 5 3 222 9 247 2.31e-11 63.9
Msa0460900 MtrunA17_Chr6g0475111 22.105 190 123 4 28 197 286 470 4.36e-11 63.2
Msa0460900 MtrunA17_Chr8g0354441 23.490 298 199 8 1 269 6 303 3.16e-11 63.5
Msa0460900 MtrunA17_Chr8g0347571 25.989 177 122 2 55 222 61 237 4.07e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460900 AT5G37660.1 59.717 283 104 5 1 276 9 288 1.96e-108 316
Msa0460900 AT5G37660.2 59.574 282 104 5 1 275 9 287 2.43e-107 313
Msa0460900 AT2G01660.3 53.287 289 120 10 1 276 1 287 1.59e-93 278
Msa0460900 AT2G01660.1 53.169 284 119 9 1 272 1 282 9.01e-93 276
Msa0460900 AT2G01660.2 54.032 248 99 8 1 238 1 243 2.11e-82 248
Msa0460900 AT1G70690.1 40.614 293 150 7 1 272 1 290 7.58e-67 210
Msa0460900 AT3G60720.1 39.044 251 139 6 28 268 29 275 4.88e-51 169
Msa0460900 AT3G60720.3 39.044 251 139 6 28 268 29 275 5.46e-51 169
Msa0460900 AT3G60720.2 40.385 208 114 4 28 225 29 236 4.44e-44 150
Msa0460900 AT5G43980.1 25.660 265 173 5 27 268 27 290 4.23e-21 90.9
Msa0460900 AT5G48540.1 29.534 193 120 3 45 221 43 235 3.24e-19 85.1
Msa0460900 AT1G04520.1 25.806 279 179 7 17 270 24 299 1.78e-18 84.0
Msa0460900 AT3G22060.1 29.302 215 132 5 25 221 31 243 1.30e-17 80.5
Msa0460900 AT2G33330.1 25.685 292 193 7 2 270 6 296 2.18e-17 80.9
Msa0460900 AT1G61750.1 27.149 221 127 7 27 221 28 240 2.92e-15 75.1
Msa0460900 AT3G58310.1 28.270 237 145 9 8 222 16 249 3.04e-15 73.9
Msa0460900 AT3G21990.1 27.459 244 143 11 8 222 11 249 3.54e-15 73.9
Msa0460900 AT1G63550.1 26.471 204 130 3 39 224 45 246 4.26e-15 74.3
Msa0460900 AT4G20570.1 25.833 240 152 7 8 222 25 263 6.02e-15 73.6
Msa0460900 AT4G20560.1 25.833 240 152 7 8 222 25 263 6.02e-15 73.6
Msa0460900 AT4G20540.1 25.833 240 152 7 8 222 25 263 6.02e-15 73.6
Msa0460900 AT4G20645.1 25.833 240 152 7 8 222 25 263 6.02e-15 73.6
Msa0460900 AT4G20530.1 25.833 240 152 7 8 222 25 263 6.02e-15 73.6
Msa0460900 AT4G20550.1 25.833 240 152 7 8 222 25 263 6.02e-15 73.6
Msa0460900 AT4G20640.1 25.833 240 152 7 8 222 11 249 6.59e-15 73.2
Msa0460900 AT4G20630.1 25.833 240 152 7 8 222 11 249 6.59e-15 73.2
Msa0460900 AT4G20580.1 25.833 240 152 7 8 222 11 249 6.59e-15 73.2
Msa0460900 AT4G20600.1 25.833 240 152 7 8 222 11 249 6.59e-15 73.2
Msa0460900 AT4G20620.1 25.833 240 152 7 8 222 11 249 6.59e-15 73.2
Msa0460900 AT4G20610.1 25.833 240 152 7 8 222 11 249 6.59e-15 73.2
Msa0460900 AT4G20590.1 25.833 240 152 7 8 222 11 249 6.59e-15 73.2
Msa0460900 AT4G20670.1 25.833 240 152 7 8 222 11 249 8.93e-15 72.8
Msa0460900 AT1G63590.1 25.403 248 157 6 2 225 4 247 2.67e-14 71.6
Msa0460900 AT1G63580.1 26.667 240 153 6 37 254 32 270 2.77e-14 71.6
Msa0460900 AT5G41300.1 21.379 290 198 5 1 263 1 287 1.32e-13 69.7
Msa0460900 AT3G22010.1 26.432 227 132 9 25 222 36 256 1.76e-13 69.3
Msa0460900 AT4G05200.2 26.050 238 148 8 9 221 26 260 3.25e-13 70.1
Msa0460900 AT4G05200.1 26.050 238 148 8 9 221 8 242 3.54e-13 69.7
Msa0460900 AT1G63600.1 26.829 205 125 4 39 221 50 251 6.96e-13 68.2
Msa0460900 AT5G41290.1 22.857 245 165 5 1 223 1 243 1.43e-12 67.0
Msa0460900 AT1G63570.3 26.923 234 149 6 10 223 10 241 4.04e-12 65.5
Msa0460900 AT1G63570.1 26.923 234 149 6 10 223 10 241 4.04e-12 65.5
Msa0460900 AT1G63570.2 26.923 234 149 6 10 223 63 294 4.40e-12 65.9
Msa0460900 AT3G21970.1 26.667 240 136 10 8 216 12 242 4.91e-11 62.0
Msa0460900 AT4G23130.1 27.551 196 123 5 42 221 46 238 5.62e-11 63.2
Msa0460900 AT4G23130.2 27.551 196 123 5 42 221 46 238 5.78e-11 63.2
Msa0460900 AT4G23130.3 27.551 196 123 5 42 221 46 238 6.44e-11 62.8
Msa0460900 AT4G23280.1 26.721 247 154 8 20 244 18 259 6.59e-11 62.8
Msa0460900 AT4G23280.2 26.316 247 155 8 20 244 18 259 7.08e-11 62.8
Msa0460900 AT4G23280.3 27.570 214 130 7 28 221 28 236 8.91e-11 62.4

Find 111 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAGAAAATTAGAATATT+TGG 0.128342 3_3:+58585638 None:intergenic
AAGACATTTGCCATAATTAT+TGG 0.167670 3_3:-58586162 Msa0460900:CDS
TGTAGGTTGCTGAGTTTATT+AGG 0.179076 3_3:+58587482 None:intergenic
CTCCATTGCAAATTTGCTTT+TGG 0.183335 3_3:-58585864 Msa0460900:three_prime_UTR
GATTGTCCTTCTGGGGATTA+TGG 0.218428 3_3:-58587031 Msa0460900:CDS
CGGGTTCAGGTGGGTTGTTT+AGG 0.228798 3_3:-58587159 Msa0460900:CDS
ATCAAAGTTTGTCAAACTTA+TGG 0.233696 3_3:-58585924 Msa0460900:three_prime_UTR
TTGAGAAATGATTGTCCTTC+TGG 0.234841 3_3:-58587040 Msa0460900:CDS
GACATCCATGTGAATATAAA+AGG 0.243532 3_3:-58585687 Msa0460900:three_prime_UTR
TTGTTTAGGGTTGGTGGTTC+GGG 0.272429 3_3:-58587145 Msa0460900:CDS
TTGGGTGGGTTGGCGGGTTC+AGG 0.279854 3_3:-58587172 Msa0460900:CDS
TGCTAATAATCCAATAATTA+TGG 0.281272 3_3:+58586152 None:intergenic
GGGTTCAGGTGGGTTGTTTA+GGG 0.285383 3_3:-58587158 Msa0460900:CDS
TGGTATTTGAGAAGATAAAA+AGG 0.304797 3_3:+58585826 None:intergenic
GGTGGGTTGGCGGGTTCAGG+TGG 0.311303 3_3:-58587169 Msa0460900:CDS
GTTGTTTAGGGTTGGTGGTT+CGG 0.315244 3_3:-58587146 Msa0460900:CDS
GGGATGTGAGGAGTGAGTTT+AGG 0.333309 3_3:+58587503 None:intergenic
ACTCTACTGGTGGTGCTGGT+GGG 0.348191 3_3:-58586976 Msa0460900:CDS
GACGATGTCGTTAGGGTTTG+AGG 0.353702 3_3:+58587432 None:intergenic
CTCTACTGGTGGTGCTGGTG+GGG 0.370242 3_3:-58586975 Msa0460900:CDS
TACTCTACTGGTGGTGCTGG+TGG 0.391074 3_3:-58586977 Msa0460900:CDS
GATTATGGAGATATGTTCTT+GGG 0.391700 3_3:-58587016 Msa0460900:CDS
GGTGGGTTGTTTAGGGTTGG+TGG 0.391830 3_3:-58587151 Msa0460900:CDS
TTTAGGTTAGATTCGTAGGT+TGG 0.392417 3_3:+58587520 None:intergenic
TGCTGTGTTGGGTGGGTTGG+CGG 0.395709 3_3:-58587179 Msa0460900:CDS
TTAGGTTAGATTCGTAGGTT+GGG 0.397850 3_3:+58587521 None:intergenic
GCTGTGTTGGGTGGGTTGGC+GGG 0.402006 3_3:-58587178 Msa0460900:CDS
TGGTGGTTCGGGTCAGTTGA+AGG 0.409087 3_3:-58587134 Msa0460900:CDS
GTAGGTTGCTGAGTTTATTA+GGG 0.412170 3_3:+58587483 None:intergenic
TCAGGTGGGTTGTTTAGGGT+TGG 0.416015 3_3:-58587154 Msa0460900:CDS
TGAGTTTAGGTTAGATTCGT+AGG 0.417489 3_3:+58587516 None:intergenic
ACACCGTAGACGATGTCGTT+AGG 0.420935 3_3:+58587424 None:intergenic
TGAGAAATGATTGTCCTTCT+GGG 0.421310 3_3:-58587039 Msa0460900:CDS
TGAAAGTTGAGAAGATCAAG+AGG 0.435685 3_3:+58587611 None:intergenic
CACCGTAGACGATGTCGTTA+GGG 0.441132 3_3:+58587425 None:intergenic
CTTTGCTTCTCAATCTGTGA+AGG 0.441937 3_3:+58587662 None:intergenic
CAGATTGAGAAGCAAAGAAA+TGG 0.450556 3_3:-58587656 Msa0460900:exon
GGATTATGGAGATATGTTCT+TGG 0.450857 3_3:-58587017 Msa0460900:CDS
CGCGTTGGTGACATATGTCC+TGG 0.451687 3_3:-58587337 Msa0460900:CDS
CCCGGGTCATACCCTACTTC+AGG 0.455161 3_3:+58587211 None:intergenic
TTGAGAAGATCAAGAGGGAG+AGG 0.455374 3_3:+58587617 None:intergenic
AAGAAATGTGGGCCTGAAGT+AGG 0.455715 3_3:-58587223 Msa0460900:CDS
AGATGCTGTGTTGGGTGGGT+TGG 0.456176 3_3:-58587182 Msa0460900:CDS
AACTTTGTTGAGTGGGCAAA+GGG 0.460535 3_3:+58585616 None:intergenic
TTTGGCCTTACCATGAGGCT+TGG 0.468981 3_3:+58586940 None:intergenic
CAAATTTGCAATGGAGAAGA+AGG 0.472499 3_3:+58585871 None:intergenic
TGAGACGGCACGTGCAATGC+AGG 0.479239 3_3:+58587360 None:intergenic
GATGATGGTGAAGTTGTTGT+AGG 0.488958 3_3:+58587456 None:intergenic
ACGATAGATGCTGTGTTGGG+TGG 0.499063 3_3:-58587187 Msa0460900:CDS
CAACTTTGTTGAGTGGGCAA+AGG 0.503453 3_3:+58585615 None:intergenic
AACCCTAACGACATCGTCTA+CGG 0.507804 3_3:-58587427 Msa0460900:CDS
GCAATGCAGGAGGAGCAGTC+TGG 0.509242 3_3:+58587373 None:intergenic
TTCCAAAAGCAAATTTGCAA+TGG 0.509675 3_3:+58585862 None:intergenic
AGGTACTCTACTGGTGGTGC+TGG 0.511132 3_3:-58586980 Msa0460900:CDS
GAAGTTGTTGTAGGATGTGT+AGG 0.519106 3_3:+58587465 None:intergenic
GAGGAATGTGTCTGTGGAGA+TGG 0.521061 3_3:+58587573 None:intergenic
GGTGGTTCGGGTCAGTTGAA+GGG 0.521698 3_3:-58587133 Msa0460900:CDS
CTGAGTTTATTAGGGATGTG+AGG 0.524550 3_3:+58587491 None:intergenic
CTGTGGAGATGGAAAATGAA+TGG 0.526243 3_3:+58587584 None:intergenic
ATGTGAATATAAAAGGCAAA+AGG 0.530706 3_3:-58585680 Msa0460900:three_prime_UTR
TAGGTTAGATTCGTAGGTTG+GGG 0.530970 3_3:+58587522 None:intergenic
AATAGCAATATAAGAAGAGA+GGG 0.531320 3_3:+58585785 None:intergenic
ACTACGCCGCCGCACACGCC+AGG 0.536702 3_3:+58587319 None:intergenic
TGGAGATGTCGCCACGACAT+TGG 0.537747 3_3:+58587398 None:intergenic
GGCGGCGTAGTGCAATTAGA+AGG 0.538264 3_3:-58587307 Msa0460900:CDS
AGAAATGTGGGCCTGAAGTA+GGG 0.540842 3_3:-58587222 Msa0460900:CDS
GACAATCATTTCTCAACCGT+CGG 0.542438 3_3:+58587047 None:intergenic
TATAAAAGGCAAAAGGAAAG+AGG 0.550930 3_3:-58585673 Msa0460900:three_prime_UTR
CGATAGATGCTGTGTTGGGT+GGG 0.551280 3_3:-58587186 Msa0460900:CDS
TGTTATGCAAGGTACTCTAC+TGG 0.554321 3_3:-58586989 Msa0460900:CDS
GTTAGGGTTTGAGGAGATGA+TGG 0.555268 3_3:+58587441 None:intergenic
GTGGGTTGGCGGGTTCAGGT+GGG 0.556632 3_3:-58587168 Msa0460900:CDS
ATATTCACATGGATGTCCAA+TGG 0.558742 3_3:+58585693 None:intergenic
GGTACGATAGATGCTGTGTT+GGG 0.563981 3_3:-58587190 Msa0460900:CDS
AACACAGCATCTATCGTACC+CGG 0.565235 3_3:+58587193 None:intergenic
AAGGGAATGGCACAGTGTGT+TGG 0.569824 3_3:-58587115 Msa0460900:CDS
TTCTTGAGAAGGATTTGTGA+GGG 0.570265 3_3:-58586099 Msa0460900:CDS
GCAGGAGGAGCAGTCTGGCA+TGG 0.570950 3_3:+58587378 None:intergenic
GTGTCAAGATTGTGTTTCAG+AGG 0.572991 3_3:-58587074 Msa0460900:CDS
TTCGGGTCAGTTGAAGGGAA+TGG 0.573592 3_3:-58587128 Msa0460900:CDS
AGAAGGATTTGTGAGGGACA+AGG 0.574299 3_3:-58586093 Msa0460900:intron
GAGAAATGATTGTCCTTCTG+GGG 0.574534 3_3:-58587038 Msa0460900:CDS
CATGCTTACTCCAAGCCTCA+TGG 0.577319 3_3:-58586950 Msa0460900:intron
TCCACAGACACATTCCTCTA+CGG 0.587871 3_3:-58587568 Msa0460900:CDS
GGGTACGATAGATGCTGTGT+TGG 0.588107 3_3:-58587191 Msa0460900:CDS
ACGATTGTGTTGAAGAAATG+TGG 0.594488 3_3:-58587235 Msa0460900:CDS
GCACGTGCCGTCTCACGCGT+TGG 0.594995 3_3:-58587352 Msa0460900:CDS
GCCTGAAGTAGGGTATGACC+CGG 0.597666 3_3:-58587212 Msa0460900:CDS
TATGTCACCAACGCGTGAGA+CGG 0.602566 3_3:+58587345 None:intergenic
AAATAGCAATATAAGAAGAG+AGG 0.603886 3_3:+58585784 None:intergenic
TACGGTGTCTACCAATGTCG+TGG 0.609769 3_3:-58587409 Msa0460900:CDS
GAAAGTTGAGAAGATCAAGA+GGG 0.611900 3_3:+58587612 None:intergenic
GGCAAGAAAAGATAAGACAT+TGG 0.612310 3_3:+58585806 None:intergenic
CTTGTGTGCACCCACCGTAG+AGG 0.614149 3_3:+58587554 None:intergenic
CGATTGTGTTGAAGAAATGT+GGG 0.626819 3_3:-58587234 Msa0460900:CDS
ATATGTCCTGGCGTGTGCGG+CGG 0.627188 3_3:-58587325 Msa0460900:CDS
GACGGCACGTGCAATGCAGG+AGG 0.628710 3_3:+58587363 None:intergenic
ATTATGGAGATATGTTCTTG+GGG 0.629208 3_3:-58587015 Msa0460900:CDS
GTGTTTCAGAGGCAATCCGA+CGG 0.633404 3_3:-58587063 Msa0460900:CDS
CAGACACATTCCTCTACGGT+GGG 0.635489 3_3:-58587564 Msa0460900:CDS
ACAGACACATTCCTCTACGG+TGG 0.641543 3_3:-58587565 Msa0460900:CDS
TTTCTTGAGAAGGATTTGTG+AGG 0.642073 3_3:-58586100 Msa0460900:CDS
ACCGTAGAGGAATGTGTCTG+TGG 0.656610 3_3:+58587567 None:intergenic
TCTTGGGGAAGTGTTATGCA+AGG 0.658898 3_3:-58587000 Msa0460900:CDS
ATATCTCCATAATCCCCAGA+AGG 0.659310 3_3:+58587025 None:intergenic
GACATATGTCCTGGCGTGTG+CGG 0.659611 3_3:-58587328 Msa0460900:CDS
TATGCAAGGTACTCTACTGG+TGG 0.668750 3_3:-58586986 Msa0460900:CDS
GAAGGCTGAGAATTGATCAG+TGG 0.681543 3_3:+58585889 None:intergenic
ACACAGCATCTATCGTACCC+GGG 0.696058 3_3:+58587194 None:intergenic
CCTGAAGTAGGGTATGACCC+GGG 0.746476 3_3:-58587211 Msa0460900:CDS
GCAGGTAAATCAGATCACGA+TGG 0.755003 3_3:-58586189 Msa0460900:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTCTTTTAGTTTTAA+TGG + chr3_3:58586434-58586453 None:intergenic 10.0%
!! AGAAAATATTAAAACAAATA+TGG + chr3_3:58587344-58587363 None:intergenic 10.0%
!!! AAATATTCTTTTAGTTTTAA+TGG + chr3_3:58586434-58586453 None:intergenic 10.0%
!! AGAAAATATTAAAACAAATA+TGG + chr3_3:58587344-58587363 None:intergenic 10.0%
!!! TATGACAATATTAAGTTTTT+AGG - chr3_3:58586036-58586055 Msa0460900:intron 15.0%
!!! GGGAAAAATAATAATAATTT+TGG + chr3_3:58586388-58586407 None:intergenic 15.0%
!! TAAAACTAAAAGAATATTTG+TGG - chr3_3:58586435-58586454 Msa0460900:intron 15.0%
!! AATCTATAAATATCTATTTG+TGG - chr3_3:58586567-58586586 Msa0460900:intron 15.0%
!! GTTAAGAAAATTAGAATATT+TGG + chr3_3:58587672-58587691 None:intergenic 15.0%
!!! TATGACAATATTAAGTTTTT+AGG - chr3_3:58586036-58586055 Msa0460900:intron 15.0%
!!! GGGAAAAATAATAATAATTT+TGG + chr3_3:58586388-58586407 None:intergenic 15.0%
!! TAAAACTAAAAGAATATTTG+TGG - chr3_3:58586435-58586454 Msa0460900:intron 15.0%
!! AATCTATAAATATCTATTTG+TGG - chr3_3:58586567-58586586 Msa0460900:intron 15.0%
!! GTTAAGAAAATTAGAATATT+TGG + chr3_3:58587672-58587691 None:intergenic 15.0%
!! ATTCTTCAAAAAACCATATT+AGG + chr3_3:58586471-58586490 None:intergenic 20.0%
!!! TTTTTGTGTTTAATGTTGTT+TGG - chr3_3:58586490-58586509 Msa0460900:intron 20.0%
!!! TTTTGTGTTTAATGTTGTTT+GGG - chr3_3:58586491-58586510 Msa0460900:intron 20.0%
!! TAGAAAAGAATGTAAATATG+AGG - chr3_3:58586621-58586640 Msa0460900:intron 20.0%
!!! GCTAATTTATTTGATTCTTT+TGG - chr3_3:58587084-58587103 Msa0460900:CDS 20.0%
!! TGCTAATAATCCAATAATTA+TGG + chr3_3:58587158-58587177 None:intergenic 20.0%
!! AAACAAATATGGAATCATTT+AGG + chr3_3:58587333-58587352 None:intergenic 20.0%
!! ATTCTTCAAAAAACCATATT+AGG + chr3_3:58586471-58586490 None:intergenic 20.0%
!!! TTTTTGTGTTTAATGTTGTT+TGG - chr3_3:58586490-58586509 Msa0460900:intron 20.0%
!!! TTTTGTGTTTAATGTTGTTT+GGG - chr3_3:58586491-58586510 Msa0460900:intron 20.0%
!! TAGAAAAGAATGTAAATATG+AGG - chr3_3:58586621-58586640 Msa0460900:intron 20.0%
!!! GCTAATTTATTTGATTCTTT+TGG - chr3_3:58587084-58587103 Msa0460900:CDS 20.0%
!! TGCTAATAATCCAATAATTA+TGG + chr3_3:58587158-58587177 None:intergenic 20.0%
!! AAACAAATATGGAATCATTT+AGG + chr3_3:58587333-58587352 None:intergenic 20.0%
!!! CAATATTAAGTTTTTAGGCA+TGG - chr3_3:58586041-58586060 Msa0460900:intron 25.0%
!!! TATATTTAACGTAGCTTTAG+GGG + chr3_3:58586408-58586427 None:intergenic 25.0%
!! GTATATTTAACGTAGCTTTA+GGG + chr3_3:58586409-58586428 None:intergenic 25.0%
! AGTATATTTAACGTAGCTTT+AGG + chr3_3:58586410-58586429 None:intergenic 25.0%
! TTTGTAATGTGATACAAGAT+AGG + chr3_3:58586869-58586888 None:intergenic 25.0%
! AAGACATTTGCCATAATTAT+TGG - chr3_3:58587145-58587164 Msa0460900:CDS 25.0%
!!! TTTTTTTTGCTTTCTTGAGA+AGG - chr3_3:58587197-58587216 Msa0460900:CDS 25.0%
! AAAAATAAAGATTGAGAGAG+AGG + chr3_3:58587261-58587280 None:intergenic 25.0%
!!! GTTTTAATATTTTCTGATGC+AGG - chr3_3:58587349-58587368 Msa0460900:CDS 25.0%
! ATCAAAGTTTGTCAAACTTA+TGG - chr3_3:58587383-58587402 Msa0460900:CDS 25.0%
! TGGTATTTGAGAAGATAAAA+AGG + chr3_3:58587484-58587503 None:intergenic 25.0%
! AATAGCAATATAAGAAGAGA+GGG + chr3_3:58587525-58587544 None:intergenic 25.0%
! AAATAGCAATATAAGAAGAG+AGG + chr3_3:58587526-58587545 None:intergenic 25.0%
!! TTTTGCCTTTTATATTCACA+TGG + chr3_3:58587628-58587647 None:intergenic 25.0%
! ATGTGAATATAAAAGGCAAA+AGG - chr3_3:58587627-58587646 Msa0460900:CDS 25.0%
!!! CAATATTAAGTTTTTAGGCA+TGG - chr3_3:58586041-58586060 Msa0460900:intron 25.0%
!!! TATATTTAACGTAGCTTTAG+GGG + chr3_3:58586408-58586427 None:intergenic 25.0%
!! GTATATTTAACGTAGCTTTA+GGG + chr3_3:58586409-58586428 None:intergenic 25.0%
! AGTATATTTAACGTAGCTTT+AGG + chr3_3:58586410-58586429 None:intergenic 25.0%
! TTTGTAATGTGATACAAGAT+AGG + chr3_3:58586869-58586888 None:intergenic 25.0%
! AAGACATTTGCCATAATTAT+TGG - chr3_3:58587145-58587164 Msa0460900:CDS 25.0%
!!! TTTTTTTTGCTTTCTTGAGA+AGG - chr3_3:58587197-58587216 Msa0460900:CDS 25.0%
! AAAAATAAAGATTGAGAGAG+AGG + chr3_3:58587261-58587280 None:intergenic 25.0%
!!! GTTTTAATATTTTCTGATGC+AGG - chr3_3:58587349-58587368 Msa0460900:CDS 25.0%
! ATCAAAGTTTGTCAAACTTA+TGG - chr3_3:58587383-58587402 Msa0460900:CDS 25.0%
! TGGTATTTGAGAAGATAAAA+AGG + chr3_3:58587484-58587503 None:intergenic 25.0%
! AATAGCAATATAAGAAGAGA+GGG + chr3_3:58587525-58587544 None:intergenic 25.0%
! AAATAGCAATATAAGAAGAG+AGG + chr3_3:58587526-58587545 None:intergenic 25.0%
!! TTTTGCCTTTTATATTCACA+TGG + chr3_3:58587628-58587647 None:intergenic 25.0%
! ATGTGAATATAAAAGGCAAA+AGG - chr3_3:58587627-58587646 Msa0460900:CDS 25.0%
GATTATGGAGATATGTTCTT+GGG - chr3_3:58586291-58586310 Msa0460900:intron 30.0%
ATTATGGAGATATGTTCTTG+GGG - chr3_3:58586292-58586311 Msa0460900:intron 30.0%
!! TTTAGGTTGCTCTATCTTTA+GGG - chr3_3:58586659-58586678 Msa0460900:intron 30.0%
GAAAAGGCAAAGATAACTTA+AGG - chr3_3:58586989-58587008 Msa0460900:CDS 30.0%
TTGAGAAAAGCAATAGAAAG+TGG - chr3_3:58587024-58587043 Msa0460900:CDS 30.0%
TGAGAAAAGCAATAGAAAGT+GGG - chr3_3:58587025-58587044 Msa0460900:CDS 30.0%
!! TATTTGATTCTTTTGGTGAC+TGG - chr3_3:58587091-58587110 Msa0460900:CDS 30.0%
GAGAGAGGAAATTAAAAATG+TGG + chr3_3:58587246-58587265 None:intergenic 30.0%
TTCCAAAAGCAAATTTGCAA+TGG + chr3_3:58587448-58587467 None:intergenic 30.0%
ATTAGAAAAAGATGCACCAT+TGG - chr3_3:58587598-58587617 Msa0460900:CDS 30.0%
GACATCCATGTGAATATAAA+AGG - chr3_3:58587620-58587639 Msa0460900:CDS 30.0%
TATAAAAGGCAAAAGGAAAG+AGG - chr3_3:58587634-58587653 Msa0460900:CDS 30.0%
GATTATGGAGATATGTTCTT+GGG - chr3_3:58586291-58586310 Msa0460900:intron 30.0%
ATTATGGAGATATGTTCTTG+GGG - chr3_3:58586292-58586311 Msa0460900:intron 30.0%
!! TTTAGGTTGCTCTATCTTTA+GGG - chr3_3:58586659-58586678 Msa0460900:intron 30.0%
GAAAAGGCAAAGATAACTTA+AGG - chr3_3:58586989-58587008 Msa0460900:CDS 30.0%
TTGAGAAAAGCAATAGAAAG+TGG - chr3_3:58587024-58587043 Msa0460900:CDS 30.0%
TGAGAAAAGCAATAGAAAGT+GGG - chr3_3:58587025-58587044 Msa0460900:CDS 30.0%
!! TATTTGATTCTTTTGGTGAC+TGG - chr3_3:58587091-58587110 Msa0460900:CDS 30.0%
GAGAGAGGAAATTAAAAATG+TGG + chr3_3:58587246-58587265 None:intergenic 30.0%
TTCCAAAAGCAAATTTGCAA+TGG + chr3_3:58587448-58587467 None:intergenic 30.0%
ATTAGAAAAAGATGCACCAT+TGG - chr3_3:58587598-58587617 Msa0460900:CDS 30.0%
GACATCCATGTGAATATAAA+AGG - chr3_3:58587620-58587639 Msa0460900:CDS 30.0%
TATAAAAGGCAAAAGGAAAG+AGG - chr3_3:58587634-58587653 Msa0460900:CDS 30.0%
CAGATTGAGAAGCAAAGAAA+TGG - chr3_3:58585651-58585670 Msa0460900:three_prime_UTR 35.0%
GAAAGTTGAGAAGATCAAGA+GGG + chr3_3:58585698-58585717 None:intergenic 35.0%
TGAAAGTTGAGAAGATCAAG+AGG + chr3_3:58585699-58585718 None:intergenic 35.0%
TTAGGTTAGATTCGTAGGTT+GGG + chr3_3:58585789-58585808 None:intergenic 35.0%
! TTTAGGTTAGATTCGTAGGT+TGG + chr3_3:58585790-58585809 None:intergenic 35.0%
! TGAGTTTAGGTTAGATTCGT+AGG + chr3_3:58585794-58585813 None:intergenic 35.0%
GTAGGTTGCTGAGTTTATTA+GGG + chr3_3:58585827-58585846 None:intergenic 35.0%
TGTAGGTTGCTGAGTTTATT+AGG + chr3_3:58585828-58585847 None:intergenic 35.0%
ACGATTGTGTTGAAGAAATG+TGG - chr3_3:58586072-58586091 Msa0460900:intron 35.0%
CGATTGTGTTGAAGAAATGT+GGG - chr3_3:58586073-58586092 Msa0460900:intron 35.0%
!! TGTTGGAGATTTGAGTTTTG+TGG - chr3_3:58586209-58586228 Msa0460900:intron 35.0%
TTGAGAAATGATTGTCCTTC+TGG - chr3_3:58586267-58586286 Msa0460900:intron 35.0%
TGAGAAATGATTGTCCTTCT+GGG - chr3_3:58586268-58586287 Msa0460900:intron 35.0%
GGATTATGGAGATATGTTCT+TGG - chr3_3:58586290-58586309 Msa0460900:intron 35.0%
!!! ATAATTTTGGCCTTACCATG+AGG + chr3_3:58586375-58586394 None:intergenic 35.0%
! TGGTGATGATTTGCCTAATA+TGG - chr3_3:58586455-58586474 Msa0460900:intron 35.0%
GGCTATCTTGAACATTGTTT+AGG - chr3_3:58586642-58586661 Msa0460900:intron 35.0%
!! GTTTAGGTTGCTCTATCTTT+AGG - chr3_3:58586658-58586677 Msa0460900:intron 35.0%
TCGTTTCTCTGTAGATGAAA+AGG - chr3_3:58586973-58586992 Msa0460900:CDS 35.0%
TTTCTTGAGAAGGATTTGTG+AGG - chr3_3:58587207-58587226 Msa0460900:CDS 35.0%
TTCTTGAGAAGGATTTGTGA+GGG - chr3_3:58587208-58587227 Msa0460900:CDS 35.0%
CAAATTTGCAATGGAGAAGA+AGG + chr3_3:58587439-58587458 None:intergenic 35.0%
!! CTCCATTGCAAATTTGCTTT+TGG - chr3_3:58587443-58587462 Msa0460900:CDS 35.0%
GGCAAGAAAAGATAAGACAT+TGG + chr3_3:58587504-58587523 None:intergenic 35.0%
ATATTCACATGGATGTCCAA+TGG + chr3_3:58587617-58587636 None:intergenic 35.0%
CAGATTGAGAAGCAAAGAAA+TGG - chr3_3:58585651-58585670 Msa0460900:three_prime_UTR 35.0%
GAAAGTTGAGAAGATCAAGA+GGG + chr3_3:58585698-58585717 None:intergenic 35.0%
TGAAAGTTGAGAAGATCAAG+AGG + chr3_3:58585699-58585718 None:intergenic 35.0%
TTAGGTTAGATTCGTAGGTT+GGG + chr3_3:58585789-58585808 None:intergenic 35.0%
! TTTAGGTTAGATTCGTAGGT+TGG + chr3_3:58585790-58585809 None:intergenic 35.0%
! TGAGTTTAGGTTAGATTCGT+AGG + chr3_3:58585794-58585813 None:intergenic 35.0%
GTAGGTTGCTGAGTTTATTA+GGG + chr3_3:58585827-58585846 None:intergenic 35.0%
TGTAGGTTGCTGAGTTTATT+AGG + chr3_3:58585828-58585847 None:intergenic 35.0%
ACGATTGTGTTGAAGAAATG+TGG - chr3_3:58586072-58586091 Msa0460900:intron 35.0%
CGATTGTGTTGAAGAAATGT+GGG - chr3_3:58586073-58586092 Msa0460900:intron 35.0%
!! TGTTGGAGATTTGAGTTTTG+TGG - chr3_3:58586209-58586228 Msa0460900:intron 35.0%
TTGAGAAATGATTGTCCTTC+TGG - chr3_3:58586267-58586286 Msa0460900:intron 35.0%
TGAGAAATGATTGTCCTTCT+GGG - chr3_3:58586268-58586287 Msa0460900:intron 35.0%
GGATTATGGAGATATGTTCT+TGG - chr3_3:58586290-58586309 Msa0460900:intron 35.0%
!!! ATAATTTTGGCCTTACCATG+AGG + chr3_3:58586375-58586394 None:intergenic 35.0%
! TGGTGATGATTTGCCTAATA+TGG - chr3_3:58586455-58586474 Msa0460900:intron 35.0%
GGCTATCTTGAACATTGTTT+AGG - chr3_3:58586642-58586661 Msa0460900:intron 35.0%
!! GTTTAGGTTGCTCTATCTTT+AGG - chr3_3:58586658-58586677 Msa0460900:intron 35.0%
TCGTTTCTCTGTAGATGAAA+AGG - chr3_3:58586973-58586992 Msa0460900:CDS 35.0%
TTTCTTGAGAAGGATTTGTG+AGG - chr3_3:58587207-58587226 Msa0460900:CDS 35.0%
TTCTTGAGAAGGATTTGTGA+GGG - chr3_3:58587208-58587227 Msa0460900:CDS 35.0%
CAAATTTGCAATGGAGAAGA+AGG + chr3_3:58587439-58587458 None:intergenic 35.0%
!! CTCCATTGCAAATTTGCTTT+TGG - chr3_3:58587443-58587462 Msa0460900:CDS 35.0%
GGCAAGAAAAGATAAGACAT+TGG + chr3_3:58587504-58587523 None:intergenic 35.0%
ATATTCACATGGATGTCCAA+TGG + chr3_3:58587617-58587636 None:intergenic 35.0%
! CTCAATCTGTGAAGGTTTTG+TGG + chr3_3:58585640-58585659 None:intergenic 40.0%
CTTTGCTTCTCAATCTGTGA+AGG + chr3_3:58585648-58585667 None:intergenic 40.0%
CTGTGGAGATGGAAAATGAA+TGG + chr3_3:58585726-58585745 None:intergenic 40.0%
TAGGTTAGATTCGTAGGTTG+GGG + chr3_3:58585788-58585807 None:intergenic 40.0%
CTGAGTTTATTAGGGATGTG+AGG + chr3_3:58585819-58585838 None:intergenic 40.0%
GAAGTTGTTGTAGGATGTGT+AGG + chr3_3:58585845-58585864 None:intergenic 40.0%
! GATGATGGTGAAGTTGTTGT+AGG + chr3_3:58585854-58585873 None:intergenic 40.0%
GTGTCAAGATTGTGTTTCAG+AGG - chr3_3:58586233-58586252 Msa0460900:intron 40.0%
GACAATCATTTCTCAACCGT+CGG + chr3_3:58586263-58586282 None:intergenic 40.0%
GAGAAATGATTGTCCTTCTG+GGG - chr3_3:58586269-58586288 Msa0460900:intron 40.0%
ATATCTCCATAATCCCCAGA+AGG + chr3_3:58586285-58586304 None:intergenic 40.0%
! TGTTATGCAAGGTACTCTAC+TGG - chr3_3:58586318-58586337 Msa0460900:intron 40.0%
! CTCAATCTGTGAAGGTTTTG+TGG + chr3_3:58585640-58585659 None:intergenic 40.0%
CTTTGCTTCTCAATCTGTGA+AGG + chr3_3:58585648-58585667 None:intergenic 40.0%
CTGTGGAGATGGAAAATGAA+TGG + chr3_3:58585726-58585745 None:intergenic 40.0%
TAGGTTAGATTCGTAGGTTG+GGG + chr3_3:58585788-58585807 None:intergenic 40.0%
CTGAGTTTATTAGGGATGTG+AGG + chr3_3:58585819-58585838 None:intergenic 40.0%
GAAGTTGTTGTAGGATGTGT+AGG + chr3_3:58585845-58585864 None:intergenic 40.0%
! GATGATGGTGAAGTTGTTGT+AGG + chr3_3:58585854-58585873 None:intergenic 40.0%
GTGTCAAGATTGTGTTTCAG+AGG - chr3_3:58586233-58586252 Msa0460900:intron 40.0%
GACAATCATTTCTCAACCGT+CGG + chr3_3:58586263-58586282 None:intergenic 40.0%
GAGAAATGATTGTCCTTCTG+GGG - chr3_3:58586269-58586288 Msa0460900:intron 40.0%
ATATCTCCATAATCCCCAGA+AGG + chr3_3:58586285-58586304 None:intergenic 40.0%
! TGTTATGCAAGGTACTCTAC+TGG - chr3_3:58586318-58586337 Msa0460900:intron 40.0%
!! CTGTGAAGGTTTTGTGGTGA+GGG + chr3_3:58585634-58585653 None:intergenic 45.0%
!! TCTGTGAAGGTTTTGTGGTG+AGG + chr3_3:58585635-58585654 None:intergenic 45.0%
TTGAGAAGATCAAGAGGGAG+AGG + chr3_3:58585693-58585712 None:intergenic 45.0%
TCCACAGACACATTCCTCTA+CGG - chr3_3:58585739-58585758 Msa0460900:three_prime_UTR 45.0%
GTTAGGGTTTGAGGAGATGA+TGG + chr3_3:58585869-58585888 None:intergenic 45.0%
AACCCTAACGACATCGTCTA+CGG - chr3_3:58585880-58585899 Msa0460900:three_prime_UTR 45.0%
AAGAAATGTGGGCCTGAAGT+AGG - chr3_3:58586084-58586103 Msa0460900:intron 45.0%
AGAAATGTGGGCCTGAAGTA+GGG - chr3_3:58586085-58586104 Msa0460900:intron 45.0%
AACACAGCATCTATCGTACC+CGG + chr3_3:58586117-58586136 None:intergenic 45.0%
GGTACGATAGATGCTGTGTT+GGG - chr3_3:58586117-58586136 Msa0460900:CDS 45.0%
!! GTTGTTTAGGGTTGGTGGTT+CGG - chr3_3:58586161-58586180 Msa0460900:CDS 45.0%
!! TTGTTTAGGGTTGGTGGTTC+GGG - chr3_3:58586162-58586181 Msa0460900:CDS 45.0%
! GATTGTCCTTCTGGGGATTA+TGG - chr3_3:58586276-58586295 Msa0460900:intron 45.0%
!! TCTTGGGGAAGTGTTATGCA+AGG - chr3_3:58586307-58586326 Msa0460900:intron 45.0%
! TATGCAAGGTACTCTACTGG+TGG - chr3_3:58586321-58586340 Msa0460900:intron 45.0%
TTACTCCAAGCCTCATGGTA+AGG - chr3_3:58586362-58586381 Msa0460900:intron 45.0%
TACACCTCACACTATTGACG+TGG + chr3_3:58586685-58586704 None:intergenic 45.0%
GCAGGTAAATCAGATCACGA+TGG - chr3_3:58587118-58587137 Msa0460900:CDS 45.0%
AGAAGGATTTGTGAGGGACA+AGG - chr3_3:58587214-58587233 Msa0460900:CDS 45.0%
GAAGGCTGAGAATTGATCAG+TGG + chr3_3:58587421-58587440 None:intergenic 45.0%
!! CTGTGAAGGTTTTGTGGTGA+GGG + chr3_3:58585634-58585653 None:intergenic 45.0%
!! TCTGTGAAGGTTTTGTGGTG+AGG + chr3_3:58585635-58585654 None:intergenic 45.0%
TTGAGAAGATCAAGAGGGAG+AGG + chr3_3:58585693-58585712 None:intergenic 45.0%
TCCACAGACACATTCCTCTA+CGG - chr3_3:58585739-58585758 Msa0460900:three_prime_UTR 45.0%
GTTAGGGTTTGAGGAGATGA+TGG + chr3_3:58585869-58585888 None:intergenic 45.0%
AACCCTAACGACATCGTCTA+CGG - chr3_3:58585880-58585899 Msa0460900:three_prime_UTR 45.0%
AAGAAATGTGGGCCTGAAGT+AGG - chr3_3:58586084-58586103 Msa0460900:intron 45.0%
AGAAATGTGGGCCTGAAGTA+GGG - chr3_3:58586085-58586104 Msa0460900:intron 45.0%
AACACAGCATCTATCGTACC+CGG + chr3_3:58586117-58586136 None:intergenic 45.0%
GGTACGATAGATGCTGTGTT+GGG - chr3_3:58586117-58586136 Msa0460900:CDS 45.0%
!! GTTGTTTAGGGTTGGTGGTT+CGG - chr3_3:58586161-58586180 Msa0460900:CDS 45.0%
!! TTGTTTAGGGTTGGTGGTTC+GGG - chr3_3:58586162-58586181 Msa0460900:CDS 45.0%
! GATTGTCCTTCTGGGGATTA+TGG - chr3_3:58586276-58586295 Msa0460900:intron 45.0%
!! TCTTGGGGAAGTGTTATGCA+AGG - chr3_3:58586307-58586326 Msa0460900:intron 45.0%
! TATGCAAGGTACTCTACTGG+TGG - chr3_3:58586321-58586340 Msa0460900:intron 45.0%
TTACTCCAAGCCTCATGGTA+AGG - chr3_3:58586362-58586381 Msa0460900:intron 45.0%
TACACCTCACACTATTGACG+TGG + chr3_3:58586685-58586704 None:intergenic 45.0%
GCAGGTAAATCAGATCACGA+TGG - chr3_3:58587118-58587137 Msa0460900:CDS 45.0%
AGAAGGATTTGTGAGGGACA+AGG - chr3_3:58587214-58587233 Msa0460900:CDS 45.0%
GAAGGCTGAGAATTGATCAG+TGG + chr3_3:58587421-58587440 None:intergenic 45.0%
!!! ATTTTTTTAATTTAAATTCA+TGG - chr3_3:58586843-58586862 Msa0460900:intron 5.0%
!!! ATTTTTTTAATTTAAATTCA+TGG - chr3_3:58586843-58586862 Msa0460900:intron 5.0%
GAGGAATGTGTCTGTGGAGA+TGG + chr3_3:58585737-58585756 None:intergenic 50.0%
ACCGTAGAGGAATGTGTCTG+TGG + chr3_3:58585743-58585762 None:intergenic 50.0%
ACAGACACATTCCTCTACGG+TGG - chr3_3:58585742-58585761 Msa0460900:three_prime_UTR 50.0%
CAGACACATTCCTCTACGGT+GGG - chr3_3:58585743-58585762 Msa0460900:three_prime_UTR 50.0%
GGGATGTGAGGAGTGAGTTT+AGG + chr3_3:58585807-58585826 None:intergenic 50.0%
GACGATGTCGTTAGGGTTTG+AGG + chr3_3:58585878-58585897 None:intergenic 50.0%
CACCGTAGACGATGTCGTTA+GGG + chr3_3:58585885-58585904 None:intergenic 50.0%
ACACCGTAGACGATGTCGTT+AGG + chr3_3:58585886-58585905 None:intergenic 50.0%
TACGGTGTCTACCAATGTCG+TGG - chr3_3:58585898-58585917 Msa0460900:three_prime_UTR 50.0%
TATGTCACCAACGCGTGAGA+CGG + chr3_3:58585965-58585984 None:intergenic 50.0%
ACACAGCATCTATCGTACCC+GGG + chr3_3:58586116-58586135 None:intergenic 50.0%
GGGTACGATAGATGCTGTGT+TGG - chr3_3:58586116-58586135 Msa0460900:CDS 50.0%
ACGATAGATGCTGTGTTGGG+TGG - chr3_3:58586120-58586139 Msa0460900:CDS 50.0%
CGATAGATGCTGTGTTGGGT+GGG - chr3_3:58586121-58586140 Msa0460900:CDS 50.0%
!! GGGTTCAGGTGGGTTGTTTA+GGG - chr3_3:58586149-58586168 Msa0460900:CDS 50.0%
!! TCAGGTGGGTTGTTTAGGGT+TGG - chr3_3:58586153-58586172 Msa0460900:CDS 50.0%
TTCGGGTCAGTTGAAGGGAA+TGG - chr3_3:58586179-58586198 Msa0460900:CDS 50.0%
AAGGGAATGGCACAGTGTGT+TGG - chr3_3:58586192-58586211 Msa0460900:intron 50.0%
GTGTTTCAGAGGCAATCCGA+CGG - chr3_3:58586244-58586263 Msa0460900:intron 50.0%
CATGCTTACTCCAAGCCTCA+TGG - chr3_3:58586357-58586376 Msa0460900:intron 50.0%
!! TTTGGCCTTACCATGAGGCT+TGG + chr3_3:58586370-58586389 None:intergenic 50.0%
!!! CTTTTGGTGACTGGTCTTGC+AGG - chr3_3:58587100-58587119 Msa0460900:CDS 50.0%
!! AAGGTTTTGTGGTGAGGGAC+AGG + chr3_3:58585629-58585648 None:intergenic 50.0%
GAGGAATGTGTCTGTGGAGA+TGG + chr3_3:58585737-58585756 None:intergenic 50.0%
ACCGTAGAGGAATGTGTCTG+TGG + chr3_3:58585743-58585762 None:intergenic 50.0%
ACAGACACATTCCTCTACGG+TGG - chr3_3:58585742-58585761 Msa0460900:three_prime_UTR 50.0%
CAGACACATTCCTCTACGGT+GGG - chr3_3:58585743-58585762 Msa0460900:three_prime_UTR 50.0%
GGGATGTGAGGAGTGAGTTT+AGG + chr3_3:58585807-58585826 None:intergenic 50.0%
GACGATGTCGTTAGGGTTTG+AGG + chr3_3:58585878-58585897 None:intergenic 50.0%
CACCGTAGACGATGTCGTTA+GGG + chr3_3:58585885-58585904 None:intergenic 50.0%
ACACCGTAGACGATGTCGTT+AGG + chr3_3:58585886-58585905 None:intergenic 50.0%
TACGGTGTCTACCAATGTCG+TGG - chr3_3:58585898-58585917 Msa0460900:three_prime_UTR 50.0%
TATGTCACCAACGCGTGAGA+CGG + chr3_3:58585965-58585984 None:intergenic 50.0%
ACACAGCATCTATCGTACCC+GGG + chr3_3:58586116-58586135 None:intergenic 50.0%
GGGTACGATAGATGCTGTGT+TGG - chr3_3:58586116-58586135 Msa0460900:CDS 50.0%
ACGATAGATGCTGTGTTGGG+TGG - chr3_3:58586120-58586139 Msa0460900:CDS 50.0%
CGATAGATGCTGTGTTGGGT+GGG - chr3_3:58586121-58586140 Msa0460900:CDS 50.0%
!! GGGTTCAGGTGGGTTGTTTA+GGG - chr3_3:58586149-58586168 Msa0460900:CDS 50.0%
!! TCAGGTGGGTTGTTTAGGGT+TGG - chr3_3:58586153-58586172 Msa0460900:CDS 50.0%
TTCGGGTCAGTTGAAGGGAA+TGG - chr3_3:58586179-58586198 Msa0460900:CDS 50.0%
AAGGGAATGGCACAGTGTGT+TGG - chr3_3:58586192-58586211 Msa0460900:intron 50.0%
GTGTTTCAGAGGCAATCCGA+CGG - chr3_3:58586244-58586263 Msa0460900:intron 50.0%
CATGCTTACTCCAAGCCTCA+TGG - chr3_3:58586357-58586376 Msa0460900:intron 50.0%
!! TTTGGCCTTACCATGAGGCT+TGG + chr3_3:58586370-58586389 None:intergenic 50.0%
!!! CTTTTGGTGACTGGTCTTGC+AGG - chr3_3:58587100-58587119 Msa0460900:CDS 50.0%
TGGAGATGTCGCCACGACAT+TGG + chr3_3:58585912-58585931 None:intergenic 55.0%
!! CGCGTTGGTGACATATGTCC+TGG - chr3_3:58585970-58585989 Msa0460900:intron 55.0%
GACATATGTCCTGGCGTGTG+CGG - chr3_3:58585979-58585998 Msa0460900:intron 55.0%
GGCGGCGTAGTGCAATTAGA+AGG - chr3_3:58586000-58586019 Msa0460900:intron 55.0%
GCCTGAAGTAGGGTATGACC+CGG - chr3_3:58586095-58586114 Msa0460900:CDS 55.0%
CCTGAAGTAGGGTATGACCC+GGG - chr3_3:58586096-58586115 Msa0460900:CDS 55.0%
AGATGCTGTGTTGGGTGGGT+TGG - chr3_3:58586125-58586144 Msa0460900:CDS 55.0%
!! CGGGTTCAGGTGGGTTGTTT+AGG - chr3_3:58586148-58586167 Msa0460900:CDS 55.0%
!! GGTGGGTTGTTTAGGGTTGG+TGG - chr3_3:58586156-58586175 Msa0460900:CDS 55.0%
! TGGTGGTTCGGGTCAGTTGA+AGG - chr3_3:58586173-58586192 Msa0460900:CDS 55.0%
! GGTGGTTCGGGTCAGTTGAA+GGG - chr3_3:58586174-58586193 Msa0460900:CDS 55.0%
! AGGTACTCTACTGGTGGTGC+TGG - chr3_3:58586327-58586346 Msa0460900:intron 55.0%
! TACTCTACTGGTGGTGCTGG+TGG - chr3_3:58586330-58586349 Msa0460900:intron 55.0%
!! ACTCTACTGGTGGTGCTGGT+GGG - chr3_3:58586331-58586350 Msa0460900:intron 55.0%
AGGGCCACGTCAATAGTGTG+AGG - chr3_3:58586678-58586697 Msa0460900:intron 55.0%
TGGAGATGTCGCCACGACAT+TGG + chr3_3:58585912-58585931 None:intergenic 55.0%
!! CGCGTTGGTGACATATGTCC+TGG - chr3_3:58585970-58585989 Msa0460900:intron 55.0%
GACATATGTCCTGGCGTGTG+CGG - chr3_3:58585979-58585998 Msa0460900:intron 55.0%
GGCGGCGTAGTGCAATTAGA+AGG - chr3_3:58586000-58586019 Msa0460900:intron 55.0%
GCCTGAAGTAGGGTATGACC+CGG - chr3_3:58586095-58586114 Msa0460900:CDS 55.0%
CCTGAAGTAGGGTATGACCC+GGG - chr3_3:58586096-58586115 Msa0460900:CDS 55.0%
AGATGCTGTGTTGGGTGGGT+TGG - chr3_3:58586125-58586144 Msa0460900:CDS 55.0%
!! CGGGTTCAGGTGGGTTGTTT+AGG - chr3_3:58586148-58586167 Msa0460900:CDS 55.0%
!! GGTGGGTTGTTTAGGGTTGG+TGG - chr3_3:58586156-58586175 Msa0460900:CDS 55.0%
! TGGTGGTTCGGGTCAGTTGA+AGG - chr3_3:58586173-58586192 Msa0460900:CDS 55.0%
! GGTGGTTCGGGTCAGTTGAA+GGG - chr3_3:58586174-58586193 Msa0460900:CDS 55.0%
! AGGTACTCTACTGGTGGTGC+TGG - chr3_3:58586327-58586346 Msa0460900:intron 55.0%
! TACTCTACTGGTGGTGCTGG+TGG - chr3_3:58586330-58586349 Msa0460900:intron 55.0%
!! ACTCTACTGGTGGTGCTGGT+GGG - chr3_3:58586331-58586350 Msa0460900:intron 55.0%
AGGGCCACGTCAATAGTGTG+AGG - chr3_3:58586678-58586697 Msa0460900:intron 55.0%
CTTGTGTGCACCCACCGTAG+AGG + chr3_3:58585756-58585775 None:intergenic 60.0%
GCAATGCAGGAGGAGCAGTC+TGG + chr3_3:58585937-58585956 None:intergenic 60.0%
TGAGACGGCACGTGCAATGC+AGG + chr3_3:58585950-58585969 None:intergenic 60.0%
ATATGTCCTGGCGTGTGCGG+CGG - chr3_3:58585982-58586001 Msa0460900:intron 60.0%
CCCGGGTCATACCCTACTTC+AGG + chr3_3:58586099-58586118 None:intergenic 60.0%
!! TGCTGTGTTGGGTGGGTTGG+CGG - chr3_3:58586128-58586147 Msa0460900:CDS 60.0%
!! CTCTACTGGTGGTGCTGGTG+GGG - chr3_3:58586332-58586351 Msa0460900:intron 60.0%
CTTGTGTGCACCCACCGTAG+AGG + chr3_3:58585756-58585775 None:intergenic 60.0%
GCAATGCAGGAGGAGCAGTC+TGG + chr3_3:58585937-58585956 None:intergenic 60.0%
TGAGACGGCACGTGCAATGC+AGG + chr3_3:58585950-58585969 None:intergenic 60.0%
ATATGTCCTGGCGTGTGCGG+CGG - chr3_3:58585982-58586001 Msa0460900:intron 60.0%
CCCGGGTCATACCCTACTTC+AGG + chr3_3:58586099-58586118 None:intergenic 60.0%
!! TGCTGTGTTGGGTGGGTTGG+CGG - chr3_3:58586128-58586147 Msa0460900:CDS 60.0%
!! CTCTACTGGTGGTGCTGGTG+GGG - chr3_3:58586332-58586351 Msa0460900:intron 60.0%
GCAGGAGGAGCAGTCTGGCA+TGG + chr3_3:58585932-58585951 None:intergenic 65.0%
GACGGCACGTGCAATGCAGG+AGG + chr3_3:58585947-58585966 None:intergenic 65.0%
!! GCTGTGTTGGGTGGGTTGGC+GGG - chr3_3:58586129-58586148 Msa0460900:CDS 65.0%
!! TTGGGTGGGTTGGCGGGTTC+AGG - chr3_3:58586135-58586154 Msa0460900:CDS 65.0%
!! GTGGGTTGGCGGGTTCAGGT+GGG - chr3_3:58586139-58586158 Msa0460900:CDS 65.0%
GCAGGAGGAGCAGTCTGGCA+TGG + chr3_3:58585932-58585951 None:intergenic 65.0%
GACGGCACGTGCAATGCAGG+AGG + chr3_3:58585947-58585966 None:intergenic 65.0%
!! GCTGTGTTGGGTGGGTTGGC+GGG - chr3_3:58586129-58586148 Msa0460900:CDS 65.0%
!! TTGGGTGGGTTGGCGGGTTC+AGG - chr3_3:58586135-58586154 Msa0460900:CDS 65.0%
!! GTGGGTTGGCGGGTTCAGGT+GGG - chr3_3:58586139-58586158 Msa0460900:CDS 65.0%
GCACGTGCCGTCTCACGCGT+TGG - chr3_3:58585955-58585974 Msa0460900:intron 70.0%
!! GGTGGGTTGGCGGGTTCAGG+TGG - chr3_3:58586138-58586157 Msa0460900:CDS 70.0%
GCACGTGCCGTCTCACGCGT+TGG - chr3_3:58585955-58585974 Msa0460900:intron 70.0%
!! GGTGGGTTGGCGGGTTCAGG+TGG - chr3_3:58586138-58586157 Msa0460900:CDS 70.0%
ACTACGCCGCCGCACACGCC+AGG + chr3_3:58585991-58586010 None:intergenic 75.0%
ACTACGCCGCCGCACACGCC+AGG + chr3_3:58585991-58586010 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 58585627 58587702 58585627 ID=Msa0460900;Name=Msa0460900
chr3_3 mRNA 58585627 58587702 58585627 ID=Msa0460900-mRNA-1;Parent=Msa0460900;Name=Msa0460900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=43|1|1|1|1|1|3|324|276
chr3_3 exon 58585627 58585958 58585627 ID=Msa0460900-mRNA-1:exon:12155;Parent=Msa0460900-mRNA-1
chr3_3 exon 58586094 58586207 58586094 ID=Msa0460900-mRNA-1:exon:12154;Parent=Msa0460900-mRNA-1
chr3_3 exon 58586951 58587702 58586951 ID=Msa0460900-mRNA-1:exon:12153;Parent=Msa0460900-mRNA-1
chr3_3 five_prime_UTR 58587660 58587702 58587660 ID=Msa0460900-mRNA-1:five_prime_utr;Parent=Msa0460900-mRNA-1
chr3_3 CDS 58586951 58587659 58586951 ID=Msa0460900-mRNA-1:cds;Parent=Msa0460900-mRNA-1
chr3_3 CDS 58586094 58586207 58586094 ID=Msa0460900-mRNA-1:cds;Parent=Msa0460900-mRNA-1
chr3_3 CDS 58585951 58585958 58585951 ID=Msa0460900-mRNA-1:cds;Parent=Msa0460900-mRNA-1
chr3_3 three_prime_UTR 58585627 58585950 58585627 ID=Msa0460900-mRNA-1:three_prime_utr;Parent=Msa0460900-mRNA-1
Gene Sequence

>Msa0460900

ATGGTCAAAACAAAAAAATTCCTCTCCCTCTTGATCTTCTCAACTTTCATTCTCCATTCATTTTCCATCTCCACAGACACATTCCTCTACGGTGGGTGCACACAAGAAAAATACACCCCAACCTACGAATCTAACCTAAACTCACTCCTCACATCCCTAATAAACTCAGCAACCTACACATCCTACAACAACTTCACCATCATCTCCTCAAACCCTAACGACATCGTCTACGGTGTCTACCAATGTCGTGGCGACATCTCCATGCCAGACTGCTCCTCCTGCATTGCACGTGCCGTCTCACGCGTTGGTGACATATGTCCTGGCGTGTGCGGCGGCGTAGTGCAATTAGAAGGATGTTATGTGAAGTATGACAATATTAAGTTTTTAGGCATGGAAGATAAAACGATTGTGTTGAAGAAATGTGGGCCTGAAGTAGGGTATGACCCGGGTACGATAGATGCTGTGTTGGGTGGGTTGGCGGGTTCAGGTGGGTTGTTTAGGGTTGGTGGTTCGGGTCAGTTGAAGGGAATGGCACAGTGTGTTGGAGATTTGAGTTTTGTGGAGTGTCAAGATTGTGTTTCAGAGGCAATCCGACGGTTGAGAAATGATTGTCCTTCTGGGGATTATGGAGATATGTTCTTGGGGAAGTGTTATGCAAGGTACTCTACTGGTGGTGCTGGTGGGGCACATGCTTACTCCAAGCCTCATGGTAAATCAGATCACGATGGTGAGAAGACATTTGCCATAATTATTGGATTATTAGCAGTTGTTGCTATACTTATTATTTTTTTTGCTTTCTTGAGAAGGATTTGTGAGGGACAAGGTAAATAA
Protein sequence

>Msa0460900

MVKTKKFLSLLIFSTFILHSFSISTDTFLYGGCTQEKYTPTYESNLNSLLTSLINSATYTSYNNFTIISSNPNDIVYGVYQCRGDISMPDCSSCIARAVSRVGDICPGVCGGVVQLEGCYVKYDNIKFLGMEDKTIVLKKCGPEVGYDPGTIDAVLGGLAGSGGLFRVGGSGQLKGMAQCVGDLSFVECQDCVSEAIRRLRNDCPSGDYGDMFLGKCYARYSTGGAGGAHAYSKPHGKSDHDGEKTFAIIIGLLAVVAILIIFFAFLRRICEGQGK*