Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370810 | XP_013460978.1 | 98.867 | 706 | 8 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370810 | sp|Q9SS87|SEOB_ARATH | 40.443 | 722 | 401 | 10 | 4 | 704 | 14 | 727 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370810 | A0A072UZM7 | 98.867 | 706 | 8 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0370810 | 0.819321 | 1.235249e-52 | -8.615850e-47 |
| Msa0029970 | Msa0370810 | 0.821922 | 3.120185e-53 | -8.615850e-47 |
| Msa0071850 | Msa0370810 | 0.822136 | 2.783408e-53 | -8.615850e-47 |
| Msa0071860 | Msa0370810 | 0.818078 | 2.364254e-52 | -8.615850e-47 |
| Msa0370810 | Msa0460550 | 0.808425 | 3.117297e-50 | -8.615850e-47 |
| Msa0370810 | Msa0609300 | 0.807348 | 5.282289e-50 | -8.615850e-47 |
| Msa0370810 | Msa0691910 | 0.800395 | 1.470729e-48 | -8.615850e-47 |
| Msa0370810 | Msa1187760 | 0.811892 | 5.577675e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370810 | MtrunA17_Chr3g0116601 | 98.867 | 706 | 8 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1454 |
| Msa0370810 | MtrunA17_Chr8g0381301 | 52.707 | 702 | 318 | 8 | 15 | 706 | 7 | 704 | 0.0 | 748 |
| Msa0370810 | MtrunA17_Chr7g0226571 | 45.364 | 701 | 367 | 11 | 17 | 704 | 12 | 709 | 0.0 | 600 |
| Msa0370810 | MtrunA17_Chr1g0186841 | 31.884 | 690 | 406 | 17 | 27 | 704 | 24 | 661 | 7.02e-107 | 339 |
| Msa0370810 | MtrunA17_Chr1g0187041 | 33.431 | 682 | 401 | 21 | 30 | 704 | 26 | 661 | 3.57e-104 | 332 |
| Msa0370810 | MtrunA17_Chr1g0186851 | 31.095 | 685 | 417 | 19 | 27 | 704 | 23 | 659 | 1.25e-101 | 325 |
| Msa0370810 | MtrunA17_Chr1g0186861 | 31.304 | 690 | 411 | 21 | 27 | 704 | 23 | 661 | 7.29e-101 | 323 |
| Msa0370810 | MtrunA17_Chr1g0186911 | 32.508 | 606 | 353 | 19 | 108 | 704 | 1 | 559 | 9.76e-95 | 304 |
| Msa0370810 | MtrunA17_Chr1g0165791 | 27.857 | 700 | 426 | 22 | 30 | 704 | 31 | 676 | 1.74e-76 | 259 |
| Msa0370810 | MtrunA17_Chr1g0186981 | 25.648 | 694 | 425 | 24 | 30 | 704 | 40 | 661 | 1.17e-56 | 204 |
| Msa0370810 | MtrunA17_Chr1g0186991 | 25.915 | 710 | 412 | 27 | 29 | 704 | 36 | 665 | 5.56e-53 | 194 |
| Msa0370810 | MtrunA17_Chr1g0187001 | 26.316 | 703 | 407 | 26 | 29 | 704 | 16 | 634 | 1.89e-49 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0370810 | AT3G01680.1 | 40.443 | 722 | 401 | 10 | 4 | 704 | 14 | 727 | 0.0 | 556 |
| Msa0370810 | AT3G01670.1 | 37.187 | 718 | 398 | 11 | 19 | 706 | 128 | 822 | 1.02e-153 | 466 |
| Msa0370810 | AT3G01670.2 | 37.187 | 718 | 398 | 11 | 19 | 706 | 152 | 846 | 3.17e-153 | 466 |
| Msa0370810 | AT1G67790.1 | 29.185 | 699 | 439 | 20 | 22 | 702 | 4 | 664 | 2.94e-94 | 306 |
Find 149 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATTATGTTATATTTAT+AGG | 0.156084 | 3_1:-68761742 | Msa0370810:three_prime_UTR |
| ACTTCTTCATATATTTATTT+AGG | 0.163382 | 3_1:-68761785 | Msa0370810:three_prime_UTR |
| GATATGGATTTGGGGAAATT+TGG | 0.167832 | 3_1:-68762869 | Msa0370810:CDS |
| TCAAGATTTCATCAACAATT+TGG | 0.168351 | 3_1:+68765352 | None:intergenic |
| TGACATCAATTTGGTTCTTT+TGG | 0.182104 | 3_1:-68762414 | Msa0370810:CDS |
| TGGCATTGATCCTGCACTTT+TGG | 0.203402 | 3_1:-68762773 | Msa0370810:CDS |
| TAGATGGAACTACAAAATTA+AGG | 0.217891 | 3_1:-68763362 | Msa0370810:CDS |
| TACTAGCTGGCAAGCTATTA+AGG | 0.226546 | 3_1:-68761637 | Msa0370810:three_prime_UTR |
| CTCTTCACATGATATGGATT+TGG | 0.242306 | 3_1:-68762879 | Msa0370810:CDS |
| AGCATTGAATGATTATATTA+AGG | 0.248515 | 3_1:-68762158 | Msa0370810:CDS |
| TTCCAAACGTGACATCAATT+TGG | 0.261192 | 3_1:-68762423 | Msa0370810:CDS |
| ATATCATGTGAAGAGCATTT+TGG | 0.265496 | 3_1:+68762887 | None:intergenic |
| AAAATGCTCTTCACATGATA+TGG | 0.284577 | 3_1:-68762885 | Msa0370810:CDS |
| TTAATTATGTTATATTTATA+GGG | 0.288088 | 3_1:-68761741 | Msa0370810:three_prime_UTR |
| TCTTCACATGATATGGATTT+GGG | 0.291284 | 3_1:-68762878 | Msa0370810:CDS |
| ATATTCCTATTGCTACCTAT+TGG | 0.303164 | 3_1:-68764026 | Msa0370810:CDS |
| TATTGAGGCATTTCTCTATC+TGG | 0.308636 | 3_1:-68763469 | Msa0370810:CDS |
| TGTAATAGGCTTATTCTTCC+TGG | 0.311032 | 3_1:-68762115 | Msa0370810:CDS |
| TATTCCTATTGCTACCTATT+GGG | 0.336914 | 3_1:-68764025 | Msa0370810:CDS |
| AGCAACCACATCATTGTAAT+AGG | 0.338223 | 3_1:-68762129 | Msa0370810:CDS |
| TATACAAAGATGCAAGATCT+AGG | 0.339203 | 3_1:-68763134 | Msa0370810:CDS |
| CATGTTGCTTTGTCCACAAC+TGG | 0.342091 | 3_1:+68763081 | None:intergenic |
| CATGTGCATTGTTGAATTCA+AGG | 0.348701 | 3_1:-68764106 | Msa0370810:CDS |
| AGCCTTGAGTTGCTTGTTGA+TGG | 0.355975 | 3_1:-68762793 | Msa0370810:CDS |
| TGGAATCCATACCATCTCAT+AGG | 0.362813 | 3_1:+68763101 | None:intergenic |
| TCACAAATTGCAAGTCTCAT+AGG | 0.363224 | 3_1:-68763976 | Msa0370810:CDS |
| TTATTGAACCATCAGTGATT+AGG | 0.364636 | 3_1:-68762984 | Msa0370810:CDS |
| AACCAAATTGATGTCACGTT+TGG | 0.365900 | 3_1:+68762421 | None:intergenic |
| TGTTAGAAGCAGCTGATAAC+TGG | 0.369862 | 3_1:+68765493 | None:intergenic |
| AGATGGAACTACAAAATTAA+GGG | 0.376780 | 3_1:-68763361 | Msa0370810:intron |
| GTTATTTATTTATTTATGTA+AGG | 0.378553 | 3_1:-68761680 | Msa0370810:three_prime_UTR |
| CCTTGTGGAAGCAAGAGATT+TGG | 0.382186 | 3_1:-68762816 | Msa0370810:CDS |
| CTTATTCTTCCTGGGAGTAC+TGG | 0.385929 | 3_1:-68762106 | Msa0370810:CDS |
| TCTTCTTTCTCACTTGTGAA+TGG | 0.389160 | 3_1:+68762841 | None:intergenic |
| CTTAAGGAGAGCCACAGATT+TGG | 0.390898 | 3_1:+68764218 | None:intergenic |
| GCTCTTTGCTACCAAGCTAT+AGG | 0.395639 | 3_1:-68763730 | Msa0370810:intron |
| ATTGGAAACTACTGCTGCTT+TGG | 0.396203 | 3_1:-68764952 | Msa0370810:CDS |
| TATTTAGGTTTGAATAATGT+TGG | 0.397447 | 3_1:-68761770 | Msa0370810:three_prime_UTR |
| ATTAGCAAGCTTAAAACAAA+TGG | 0.403682 | 3_1:+68761604 | None:intergenic |
| ACTGAATTTCTTGTTGTTGA+AGG | 0.404691 | 3_1:+68762453 | None:intergenic |
| TCATCAACAATTTGGATAAG+TGG | 0.405497 | 3_1:+68765360 | None:intergenic |
| CAATGTCAGGTAGTTGCTTA+AGG | 0.424799 | 3_1:+68764202 | None:intergenic |
| CATGCCATGGATAGCTAGAT+AGG | 0.425221 | 3_1:+68764328 | None:intergenic |
| ACATCGATTTCACGACCATC+AGG | 0.425726 | 3_1:+68765387 | None:intergenic |
| ATTTATTTATTTATGTAAGG+TGG | 0.434886 | 3_1:-68761677 | Msa0370810:three_prime_UTR |
| ATGACCCAATAGGTAGCAAT+AGG | 0.437496 | 3_1:+68764021 | None:intergenic |
| TTTATTTATTTATGTAAGGT+GGG | 0.442583 | 3_1:-68761676 | Msa0370810:three_prime_UTR |
| CTGTAGAGGACCATCTGAAA+TGG | 0.452637 | 3_1:-68762266 | Msa0370810:CDS |
| AAATGTTTATGTTTACTAGC+TGG | 0.453019 | 3_1:-68761650 | Msa0370810:three_prime_UTR |
| GTAATAGGCTTATTCTTCCT+GGG | 0.465122 | 3_1:-68762114 | Msa0370810:CDS |
| TAGGATTGAACAAGATGGTT+GGG | 0.467822 | 3_1:-68762185 | Msa0370810:CDS |
| TGCTGAATGTGGTCGTCAAA+TGG | 0.468093 | 3_1:-68762059 | Msa0370810:CDS |
| ACAGAATTCTCTACAATGTC+AGG | 0.472954 | 3_1:+68764189 | None:intergenic |
| CAGCTATCATGCAAATGCTC+TGG | 0.476086 | 3_1:-68764393 | Msa0370810:CDS |
| CACTAGCCATGTTACTGAAA+AGG | 0.478680 | 3_1:+68765526 | None:intergenic |
| TTAATATAATCATTCAATGC+TGG | 0.481704 | 3_1:+68762160 | None:intergenic |
| TCTGAAATGGCTAGGGCTAA+AGG | 0.482330 | 3_1:-68762253 | Msa0370810:CDS |
| CGACGGTAGTGATCGAGGTT+GGG | 0.484869 | 3_1:-68762296 | Msa0370810:CDS |
| AATACTTCTGATGACCCAAT+AGG | 0.487922 | 3_1:+68764011 | None:intergenic |
| ATTCGATATGCTTGATGCGC+TGG | 0.489847 | 3_1:-68764925 | Msa0370810:CDS |
| CACGTACAATTGGTGACTGC+AGG | 0.489917 | 3_1:+68761974 | None:intergenic |
| ATCATTGCTCGAAGTGTTGA+GGG | 0.490421 | 3_1:-68765324 | Msa0370810:CDS |
| CACAAATTGCAAGTCTCATA+GGG | 0.500466 | 3_1:-68763975 | Msa0370810:CDS |
| TTGTAGTTCCATCTATAAGC+GGG | 0.503453 | 3_1:+68763370 | None:intergenic |
| AGACACCCTATGAGATGGTA+TGG | 0.508167 | 3_1:-68763107 | Msa0370810:CDS |
| TCCTTGTTGTAGATGACAGA+AGG | 0.509373 | 3_1:-68762631 | Msa0370810:intron |
| ATACAAAGATGCAAGATCTA+GGG | 0.510637 | 3_1:-68763133 | Msa0370810:CDS |
| TAACAGAATGCAGCTAAAGA+AGG | 0.515235 | 3_1:-68765475 | Msa0370810:CDS |
| TTGATATACCTAATCACTGA+TGG | 0.515681 | 3_1:+68762976 | None:intergenic |
| ATTGTGTGAACACGTACAAT+TGG | 0.519407 | 3_1:+68761964 | None:intergenic |
| ATCGTCCTTTGCATAAATCA+AGG | 0.519868 | 3_1:+68763398 | None:intergenic |
| ACTGATGGTTCAATAATGAA+AGG | 0.522705 | 3_1:+68762991 | None:intergenic |
| TCATGCAAATGCTCTGGAGG+TGG | 0.523089 | 3_1:-68764387 | Msa0370810:CDS |
| AATAACAGCAAATGCTGCTA+AGG | 0.524767 | 3_1:+68764290 | None:intergenic |
| GAGAGCCTTGATTTATGCAA+AGG | 0.526390 | 3_1:-68763403 | Msa0370810:CDS |
| GAGGACCATCTGAAATGGCT+AGG | 0.526776 | 3_1:-68762261 | Msa0370810:CDS |
| TTATTTATTTATGTAAGGTG+GGG | 0.528343 | 3_1:-68761675 | Msa0370810:three_prime_UTR |
| ATTCTTCCTGGGAGTACTGG+TGG | 0.530375 | 3_1:-68762103 | Msa0370810:CDS |
| AATCATTGCTCGAAGTGTTG+AGG | 0.530438 | 3_1:-68765325 | Msa0370810:CDS |
| CAGTCCACTCATGCCCCTGA+TGG | 0.532299 | 3_1:-68765402 | Msa0370810:CDS |
| AGGTTAGTCTTGAAGTACTA+AGG | 0.533267 | 3_1:-68763227 | Msa0370810:CDS |
| TCGACGGTAGTGATCGAGGT+TGG | 0.535798 | 3_1:-68762297 | Msa0370810:CDS |
| TAAACATGAGCAAGATACAT+TGG | 0.541591 | 3_1:-68764970 | Msa0370810:CDS |
| TTTCATCAGCCTCAGAAGCA+TGG | 0.544045 | 3_1:-68763813 | Msa0370810:CDS |
| CTGATGGTTCAATAATGAAA+GGG | 0.546133 | 3_1:+68762992 | None:intergenic |
| TGGGAAGACAATCTTCCTTG+TGG | 0.546787 | 3_1:+68762907 | None:intergenic |
| TTCATCAGCCTCAGAAGCAT+GGG | 0.546942 | 3_1:-68763812 | Msa0370810:CDS |
| GAGTTAGAGATGGTCTATGT+AGG | 0.547501 | 3_1:-68762517 | Msa0370810:CDS |
| TGAGCACTTGCAACAGACAT+AGG | 0.550601 | 3_1:+68764048 | None:intergenic |
| GGACTGAACTTGTTTCATCA+TGG | 0.553456 | 3_1:+68765419 | None:intergenic |
| TGCAGGGAATCACGATTCGA+CGG | 0.556317 | 3_1:+68761991 | None:intergenic |
| AGCTTCGACGGTAGTGATCG+AGG | 0.558589 | 3_1:-68762301 | Msa0370810:CDS |
| CCAAATCTCTTGCTTCCACA+AGG | 0.558786 | 3_1:+68762816 | None:intergenic |
| TAATGAACTCACCTATAGCT+TGG | 0.559354 | 3_1:+68763719 | None:intergenic |
| TTGGGTCATCAGAAGTATTG+TGG | 0.562834 | 3_1:-68764007 | Msa0370810:CDS |
| GGAATCCATACCATCTCATA+GGG | 0.563188 | 3_1:+68763102 | None:intergenic |
| ATAGGATTGAACAAGATGGT+TGG | 0.565947 | 3_1:-68762186 | Msa0370810:CDS |
| AGATAACTCCCATGCTTCTG+AGG | 0.570568 | 3_1:+68763804 | None:intergenic |
| TTAGCCCTAGCCATTTCAGA+TGG | 0.573010 | 3_1:+68762256 | None:intergenic |
| ACGACCATCAGGGGCATGAG+TGG | 0.576810 | 3_1:+68765398 | None:intergenic |
| TGCCATCAACAAGCAACTCA+AGG | 0.577841 | 3_1:+68762791 | None:intergenic |
| CTTGGTAGCAAAGAGCAAGT+TGG | 0.579238 | 3_1:+68763737 | None:intergenic |
| CTATCATGCAAATGCTCTGG+AGG | 0.582216 | 3_1:-68764390 | Msa0370810:CDS |
| CATCGATTTCACGACCATCA+GGG | 0.587965 | 3_1:+68765388 | None:intergenic |
| CATACCCAGTCCAAAAGTGC+AGG | 0.589037 | 3_1:+68762763 | None:intergenic |
| AAACACACTTGCCAAATCTG+TGG | 0.591889 | 3_1:-68764229 | Msa0370810:CDS |
| GCAGGGAATCACGATTCGAC+GGG | 0.592383 | 3_1:+68761992 | None:intergenic |
| CATTAACAAAATTTCCTGTG+AGG | 0.599891 | 3_1:-68764895 | Msa0370810:intron |
| AGGACCATCTGAAATGGCTA+GGG | 0.600106 | 3_1:-68762260 | Msa0370810:CDS |
| ATGACAGTGCTTAGCTTCGA+CGG | 0.600515 | 3_1:-68762313 | Msa0370810:CDS |
| CAGTTGTGGACAAAGCAACA+TGG | 0.602977 | 3_1:-68763080 | Msa0370810:CDS |
| CTTGAATTCAACAATGCACA+TGG | 0.609877 | 3_1:+68764107 | None:intergenic |
| ATTACCTATCTAGCTATCCA+TGG | 0.610258 | 3_1:-68764332 | Msa0370810:CDS |
| AGATGAAAAGAAGCATATTG+AGG | 0.611744 | 3_1:-68763484 | Msa0370810:CDS |
| TTAGGTATATCAAAGAAGTG+TGG | 0.615080 | 3_1:-68762966 | Msa0370810:CDS |
| CTAGTAGCTCTTGATCCACA+AGG | 0.616181 | 3_1:-68762922 | Msa0370810:CDS |
| TGCACTCAATAAGCTAGTGA+AGG | 0.616891 | 3_1:-68764145 | Msa0370810:CDS |
| TCAGCACAAACAACTTTCTG+AGG | 0.617186 | 3_1:+68762076 | None:intergenic |
| ATCTTCAATCAACAATGCCA+TGG | 0.617760 | 3_1:-68763029 | Msa0370810:CDS |
| GATGGTATGGATTCCAGTTG+TGG | 0.618882 | 3_1:-68763094 | Msa0370810:CDS |
| TACAAAGATGCAAGATCTAG+GGG | 0.620217 | 3_1:-68763132 | Msa0370810:CDS |
| ATCGATTTCACGACCATCAG+GGG | 0.621216 | 3_1:+68765389 | None:intergenic |
| GGGTGAGACACCCTATGAGA+TGG | 0.623266 | 3_1:-68763112 | Msa0370810:CDS |
| TAGCAACCTCGAGTTAGAGA+TGG | 0.624100 | 3_1:-68762527 | Msa0370810:CDS |
| GGTATTCCACCAGTACTCCC+AGG | 0.624299 | 3_1:+68762097 | None:intergenic |
| AAAACTACAACATGGTAAGA+CGG | 0.624894 | 3_1:-68762365 | Msa0370810:CDS |
| GTGAGAAAGAAGAATCCTTG+TGG | 0.628042 | 3_1:-68762831 | Msa0370810:CDS |
| TTTGTAGTTCCATCTATAAG+CGG | 0.628312 | 3_1:+68763369 | None:intergenic |
| TCTTCTGAAATATATTCAGA+TGG | 0.628420 | 3_1:+68764078 | None:intergenic |
| ACGTACAATTGGTGACTGCA+GGG | 0.629728 | 3_1:+68761975 | None:intergenic |
| ATGGAGGCGAAGATCTAGAG+TGG | 0.631690 | 3_1:-68762591 | Msa0370810:CDS |
| ATAAGCCTATTACAATGATG+TGG | 0.632932 | 3_1:+68762124 | None:intergenic |
| TGTAGTTCCATCTATAAGCG+GGG | 0.634747 | 3_1:+68763371 | None:intergenic |
| GGTTGGGCAATATTCTGTAG+AGG | 0.638960 | 3_1:-68762280 | Msa0370810:CDS |
| GGGTCACGAACACTGTGCCA+TGG | 0.642952 | 3_1:+68763012 | None:intergenic |
| AAAGTTGTTTGTGCTGAATG+TGG | 0.644249 | 3_1:-68762070 | Msa0370810:CDS |
| AAAATCATATGTCTATATGG+AGG | 0.645145 | 3_1:-68762607 | Msa0370810:CDS |
| CTTCACATGATATGGATTTG+GGG | 0.646725 | 3_1:-68762877 | Msa0370810:CDS |
| AAGCATAGGATTGAACAAGA+TGG | 0.647135 | 3_1:-68762190 | Msa0370810:CDS |
| TCATGCAGTCAACACATCGA+TGG | 0.651245 | 3_1:+68761871 | None:intergenic |
| GAAGCAGCTGATAACTGGCG+AGG | 0.655882 | 3_1:+68765498 | None:intergenic |
| GTAGTTCCATCTATAAGCGG+GGG | 0.657696 | 3_1:+68763372 | None:intergenic |
| TTAGTCTTGAAGTACTAAGG+AGG | 0.660034 | 3_1:-68763224 | Msa0370810:CDS |
| GCACTTGCAACAGACATAGG+AGG | 0.680826 | 3_1:+68764051 | None:intergenic |
| TTGTACTCAAAACTACAACA+TGG | 0.681733 | 3_1:-68762373 | Msa0370810:CDS |
| CATAGACCATCTCTAACTCG+AGG | 0.681982 | 3_1:+68762521 | None:intergenic |
| TTATTGAGTGCATCAAACTG+TGG | 0.686554 | 3_1:+68764156 | None:intergenic |
| TCACACAATCAGCGCATCAG+TGG | 0.704079 | 3_1:-68761950 | Msa0370810:three_prime_UTR |
| AGATGCACATGCATCAACAA+TGG | 0.729582 | 3_1:-68764364 | Msa0370810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTTTCAAAAACAAAA+GGG | + | chr3_1:68763808-68763827 | None:intergenic | 10.0% |
| !!! | AATTAATTTTCAAAAACAAA+AGG | + | chr3_1:68763809-68763828 | None:intergenic | 10.0% |
| !! | GTTAATTATGTTATATTTAT+AGG | - | chr3_1:68765368-68765387 | Msa0370810:CDS | 10.0% |
| !! | GTTATTTATTTATTTATGTA+AGG | - | chr3_1:68765430-68765449 | Msa0370810:CDS | 10.0% |
| !!! | CTTTTTTTTTTTTTTTTTGA+AGG | - | chr3_1:68765537-68765556 | Msa0370810:five_prime_UTR | 10.0% |
| !! | AAAAAACTATCTAAATAAAC+TGG | + | chr3_1:68762073-68762092 | None:intergenic | 15.0% |
| !! | TAGTACTATTAATATGATTA+TGG | - | chr3_1:68762093-68762112 | Msa0370810:CDS | 15.0% |
| !! | ATCAATTGGAAAAATTATAT+TGG | - | chr3_1:68762694-68762713 | Msa0370810:intron | 15.0% |
| !! | TCATTATTGAAAACATAATT+TGG | - | chr3_1:68763408-68763427 | Msa0370810:CDS | 15.0% |
| !! | ACTTCTTCATATATTTATTT+AGG | - | chr3_1:68765325-68765344 | Msa0370810:CDS | 15.0% |
| !! | ATTTATTTATTTATGTAAGG+TGG | - | chr3_1:68765433-68765452 | Msa0370810:CDS | 15.0% |
| !! | TTTATTTATTTATGTAAGGT+GGG | - | chr3_1:68765434-68765453 | Msa0370810:CDS | 15.0% |
| !! | ATAAACTGGTTAAAAACAAA+TGG | + | chr3_1:68762059-68762078 | None:intergenic | 20.0% |
| !! | AATATTTATTACTGTTGTCT+AGG | - | chr3_1:68762290-68762309 | Msa0370810:CDS | 20.0% |
| !!! | TATGACACATTTTAGTAATA+TGG | + | chr3_1:68762627-68762646 | None:intergenic | 20.0% |
| !!! | CAATTGATCATTTTCATTTT+AGG | + | chr3_1:68762682-68762701 | None:intergenic | 20.0% |
| !! | CTAAAATGAAAATGATCAAT+TGG | - | chr3_1:68762680-68762699 | Msa0370810:intron | 20.0% |
| !! | AATTATTCTATTCTACAACA+TGG | - | chr3_1:68763825-68763844 | Msa0370810:intron | 20.0% |
| !! | TTAATATAATCATTCAATGC+TGG | + | chr3_1:68764953-68764972 | None:intergenic | 20.0% |
| !!! | AGCATTGAATGATTATATTA+AGG | - | chr3_1:68764952-68764971 | Msa0370810:CDS | 20.0% |
| !!! | TATTTAGGTTTGAATAATGT+TGG | - | chr3_1:68765340-68765359 | Msa0370810:CDS | 20.0% |
| !! | TTATTTATTTATGTAAGGTG+GGG | - | chr3_1:68765435-68765454 | Msa0370810:CDS | 20.0% |
| !!! | ACAACAGGGAAAATATTTTT+TGG | + | chr3_1:68761553-68761572 | None:intergenic | 25.0% |
| ! | TCAAGATTTCATCAACAATT+TGG | + | chr3_1:68761761-68761780 | None:intergenic | 25.0% |
| !! | AGTTTGACCAATGATTATTT+TGG | - | chr3_1:68761964-68761983 | Msa0370810:three_prime_UTR | 25.0% |
| ! | ACTCTAACCAAAATAATCAT+TGG | + | chr3_1:68761974-68761993 | None:intergenic | 25.0% |
| !!! | ATGGTTTTTTATGTTCCATT+TGG | - | chr3_1:68762112-68762131 | Msa0370810:CDS | 25.0% |
| ! | ATGAACTTTCATGAAAGTTA+AGG | + | chr3_1:68762262-68762281 | None:intergenic | 25.0% |
| ! | AAGCATGTTAATGTTGAAAA+AGG | - | chr3_1:68762359-68762378 | Msa0370810:CDS | 25.0% |
| ! | ATCAAAAGTTAAGTTAAGAG+AGG | + | chr3_1:68762405-68762424 | None:intergenic | 25.0% |
| !!! | TGTCATTTTTGTCGAAATTT+CGG | - | chr3_1:68762647-68762666 | Msa0370810:intron | 25.0% |
| !!! | TCTTCTGAAATATATTCAGA+TGG | + | chr3_1:68763035-68763054 | None:intergenic | 25.0% |
| ! | GCAATAAGAATCTTTAATTC+AGG | + | chr3_1:68763531-68763550 | None:intergenic | 25.0% |
| ! | TAGATGGAACTACAAAATTA+AGG | - | chr3_1:68763748-68763767 | Msa0370810:CDS | 25.0% |
| ! | AGATGGAACTACAAAATTAA+GGG | - | chr3_1:68763749-68763768 | Msa0370810:CDS | 25.0% |
| ! | GGAAAAATCATATGTCTATA+TGG | - | chr3_1:68764500-68764519 | Msa0370810:intron | 25.0% |
| ! | AAAATCATATGTCTATATGG+AGG | - | chr3_1:68764503-68764522 | Msa0370810:intron | 25.0% |
| !!! | GTTTGAGAGATTTTGATAAA+TGG | - | chr3_1:68764897-68764916 | Msa0370810:CDS | 25.0% |
| !!! | ATTTTGATAAATGGAAGCAT+AGG | - | chr3_1:68764906-68764925 | Msa0370810:CDS | 25.0% |
| ! | AAATGTTTATGTTTACTAGC+TGG | - | chr3_1:68765460-68765479 | Msa0370810:CDS | 25.0% |
| ! | ATTAGCAAGCTTAAAACAAA+TGG | + | chr3_1:68765509-68765528 | None:intergenic | 25.0% |
| ! | TTTTTGCCTTTTCAGTAACA+TGG | - | chr3_1:68761578-68761597 | Msa0370810:intron | 30.0% |
| TCATCAACAATTTGGATAAG+TGG | + | chr3_1:68761753-68761772 | None:intergenic | 30.0% | |
| !! | TTTTGGTTAGAGTTCAAACT+CGG | - | chr3_1:68761981-68762000 | Msa0370810:three_prime_UTR | 30.0% |
| TAGTTAACGAGATTCAGTTA+AGG | + | chr3_1:68762026-68762045 | None:intergenic | 30.0% | |
| !!! | TTTTTTATGTTCCATTTGGC+AGG | - | chr3_1:68762116-68762135 | Msa0370810:CDS | 30.0% |
| TAAACATGAGCAAGATACAT+TGG | - | chr3_1:68762140-68762159 | Msa0370810:CDS | 30.0% | |
| CATTAACAAAATTTCCTGTG+AGG | - | chr3_1:68762215-68762234 | Msa0370810:CDS | 30.0% | |
| TCATATAAAAACAACCTCAC+AGG | + | chr3_1:68762232-68762251 | None:intergenic | 30.0% | |
| ACGTGTTTCTTAAATAGTAG+TGG | - | chr3_1:68762318-68762337 | Msa0370810:CDS | 30.0% | |
| TGTTAATGTTGAAAAAGGAG+TGG | - | chr3_1:68762364-68762383 | Msa0370810:CDS | 30.0% | |
| TATCCTTATCTTTGATTCCA+AGG | - | chr3_1:68762429-68762448 | Msa0370810:CDS | 30.0% | |
| !!! | CTGTTATTTTTGGAGAGTTT+TGG | - | chr3_1:68762835-68762854 | Msa0370810:CDS | 30.0% |
| ATATTCCTATTGCTACCTAT+TGG | - | chr3_1:68763084-68763103 | Msa0370810:CDS | 30.0% | |
| TATTCCTATTGCTACCTATT+GGG | - | chr3_1:68763085-68763104 | Msa0370810:CDS | 30.0% | |
| ! | AACACGATATCTCTTTAAAG+TGG | + | chr3_1:68763462-68763481 | None:intergenic | 30.0% |
| AGATATCGTGTTTAGCAATA+CGG | - | chr3_1:68763470-68763489 | Msa0370810:CDS | 30.0% | |
| ! | TTTAGCAATACGGAACTTTT+TGG | - | chr3_1:68763480-68763499 | Msa0370810:CDS | 30.0% |
| ! | AGATGAAAAGAAGCATATTG+AGG | - | chr3_1:68763626-68763645 | Msa0370810:intron | 30.0% |
| TTTGTAGTTCCATCTATAAG+CGG | + | chr3_1:68763744-68763763 | None:intergenic | 30.0% | |
| TATACAAAGATGCAAGATCT+AGG | - | chr3_1:68763976-68763995 | Msa0370810:CDS | 30.0% | |
| ATACAAAGATGCAAGATCTA+GGG | - | chr3_1:68763977-68763996 | Msa0370810:CDS | 30.0% | |
| CTGATGGTTCAATAATGAAA+GGG | + | chr3_1:68764121-68764140 | None:intergenic | 30.0% | |
| ACTGATGGTTCAATAATGAA+AGG | + | chr3_1:68764122-68764141 | None:intergenic | 30.0% | |
| TTATTGAACCATCAGTGATT+AGG | - | chr3_1:68764126-68764145 | Msa0370810:CDS | 30.0% | |
| TTGATATACCTAATCACTGA+TGG | + | chr3_1:68764137-68764156 | None:intergenic | 30.0% | |
| TTAGGTATATCAAAGAAGTG+TGG | - | chr3_1:68764144-68764163 | Msa0370810:CDS | 30.0% | |
| !!! | TATCATGTGAAGAGCATTTT+GGG | + | chr3_1:68764225-68764244 | None:intergenic | 30.0% |
| !!! | ATATCATGTGAAGAGCATTT+TGG | + | chr3_1:68764226-68764245 | None:intergenic | 30.0% |
| AAAATGCTCTTCACATGATA+TGG | - | chr3_1:68764225-68764244 | Msa0370810:CDS | 30.0% | |
| TCTTCACATGATATGGATTT+GGG | - | chr3_1:68764232-68764251 | Msa0370810:CDS | 30.0% | |
| TGTGACACTTAATATGACAT+AGG | + | chr3_1:68764388-68764407 | None:intergenic | 30.0% | |
| !! | ACTGAATTTCTTGTTGTTGA+AGG | + | chr3_1:68764660-68764679 | None:intergenic | 30.0% |
| !!! | TGACATCAATTTGGTTCTTT+TGG | - | chr3_1:68764696-68764715 | Msa0370810:intron | 30.0% |
| !!! | GACATCAATTTGGTTCTTTT+GGG | - | chr3_1:68764697-68764716 | Msa0370810:intron | 30.0% |
| TTGTACTCAAAACTACAACA+TGG | - | chr3_1:68764737-68764756 | Msa0370810:intron | 30.0% | |
| AAAACTACAACATGGTAAGA+CGG | - | chr3_1:68764745-68764764 | Msa0370810:intron | 30.0% | |
| ATAAGCCTATTACAATGATG+TGG | + | chr3_1:68764989-68765008 | None:intergenic | 30.0% | |
| AGGCAAAAACAAACACAACA+GGG | + | chr3_1:68761567-68761586 | None:intergenic | 35.0% | |
| AAGGCAAAAACAAACACAAC+AGG | + | chr3_1:68761568-68761587 | None:intergenic | 35.0% | |
| TAACAGAATGCAGCTAAAGA+AGG | - | chr3_1:68761635-68761654 | Msa0370810:three_prime_UTR | 35.0% | |
| CAGTTAAGGTCATATCAATC+AGG | + | chr3_1:68762012-68762031 | None:intergenic | 35.0% | |
| TGTCCTTGGAATCAAAGATA+AGG | + | chr3_1:68762435-68762454 | None:intergenic | 35.0% | |
| ATGTAATGTAAAGCTGTCCT+TGG | + | chr3_1:68762449-68762468 | None:intergenic | 35.0% | |
| !! | AGCTTTAAGAAAGAATGCAG+TGG | - | chr3_1:68762582-68762601 | Msa0370810:CDS | 35.0% |
| ATTACCTATCTAGCTATCCA+TGG | - | chr3_1:68762778-68762797 | Msa0370810:CDS | 35.0% | |
| AATAACAGCAAATGCTGCTA+AGG | + | chr3_1:68762823-68762842 | None:intergenic | 35.0% | |
| !!! | GCAGCATTTGCTGTTATTTT+TGG | - | chr3_1:68762825-68762844 | Msa0370810:CDS | 35.0% |
| ACAGAATTCTCTACAATGTC+AGG | + | chr3_1:68762924-68762943 | None:intergenic | 35.0% | |
| TTATTGAGTGCATCAAACTG+TGG | + | chr3_1:68762957-68762976 | None:intergenic | 35.0% | |
| CTTGAATTCAACAATGCACA+TGG | + | chr3_1:68763006-68763025 | None:intergenic | 35.0% | |
| CATGTGCATTGTTGAATTCA+AGG | - | chr3_1:68763004-68763023 | Msa0370810:CDS | 35.0% | |
| AATACTTCTGATGACCCAAT+AGG | + | chr3_1:68763102-68763121 | None:intergenic | 35.0% | |
| TCACAAATTGCAAGTCTCAT+AGG | - | chr3_1:68763134-68763153 | Msa0370810:CDS | 35.0% | |
| CACAAATTGCAAGTCTCATA+GGG | - | chr3_1:68763135-68763154 | Msa0370810:CDS | 35.0% | |
| AAATAGCCCTGCAAAAAGAA+GGG | + | chr3_1:68763280-68763299 | None:intergenic | 35.0% | |
| TAATGAACTCACCTATAGCT+TGG | + | chr3_1:68763394-68763413 | None:intergenic | 35.0% | |
| ! | TTTTCATCTGTACCAGAGTA+AGG | + | chr3_1:68763615-68763634 | None:intergenic | 35.0% |
| ! | TATTGAGGCATTTCTCTATC+TGG | - | chr3_1:68763641-68763660 | Msa0370810:intron | 35.0% |
| ATCGTCCTTTGCATAAATCA+AGG | + | chr3_1:68763715-68763734 | None:intergenic | 35.0% | |
| TTGTAGTTCCATCTATAAGC+GGG | + | chr3_1:68763743-68763762 | None:intergenic | 35.0% | |
| GACTTATACACATGACAAAC+AGG | - | chr3_1:68763863-68763882 | Msa0370810:intron | 35.0% | |
| !! | AGGTTAGTCTTGAAGTACTA+AGG | - | chr3_1:68763883-68763902 | Msa0370810:intron | 35.0% |
| !! | TTAGTCTTGAAGTACTAAGG+AGG | - | chr3_1:68763886-68763905 | Msa0370810:intron | 35.0% |
| TACAAAGATGCAAGATCTAG+GGG | - | chr3_1:68763978-68763997 | Msa0370810:CDS | 35.0% | |
| ATCTTCAATCAACAATGCCA+TGG | - | chr3_1:68764081-68764100 | Msa0370810:CDS | 35.0% | |
| CTCTTCACATGATATGGATT+TGG | - | chr3_1:68764231-68764250 | Msa0370810:CDS | 35.0% | |
| CTTCACATGATATGGATTTG+GGG | - | chr3_1:68764233-68764252 | Msa0370810:CDS | 35.0% | |
| GATATGGATTTGGGGAAATT+TGG | - | chr3_1:68764241-68764260 | Msa0370810:CDS | 35.0% | |
| TCTTCTTTCTCACTTGTGAA+TGG | + | chr3_1:68764272-68764291 | None:intergenic | 35.0% | |
| TTCCAAACGTGACATCAATT+TGG | - | chr3_1:68764687-68764706 | Msa0370810:intron | 35.0% | |
| AACCAAATTGATGTCACGTT+TGG | + | chr3_1:68764692-68764711 | None:intergenic | 35.0% | |
| AAGCATAGGATTGAACAAGA+TGG | - | chr3_1:68764920-68764939 | Msa0370810:CDS | 35.0% | |
| ATAGGATTGAACAAGATGGT+TGG | - | chr3_1:68764924-68764943 | Msa0370810:CDS | 35.0% | |
| TAGGATTGAACAAGATGGTT+GGG | - | chr3_1:68764925-68764944 | Msa0370810:CDS | 35.0% | |
| AGCAACCACATCATTGTAAT+AGG | - | chr3_1:68764981-68765000 | Msa0370810:intron | 35.0% | |
| TGTAATAGGCTTATTCTTCC+TGG | - | chr3_1:68764995-68765014 | Msa0370810:intron | 35.0% | |
| GTAATAGGCTTATTCTTCCT+GGG | - | chr3_1:68764996-68765015 | Msa0370810:intron | 35.0% | |
| AAAGTTGTTTGTGCTGAATG+TGG | - | chr3_1:68765040-68765059 | Msa0370810:intron | 35.0% | |
| ATTGTGTGAACACGTACAAT+TGG | + | chr3_1:68765149-68765168 | None:intergenic | 35.0% | |
| CACTAGCCATGTTACTGAAA+AGG | + | chr3_1:68761587-68761606 | None:intergenic | 40.0% | |
| TGTTAGAAGCAGCTGATAAC+TGG | + | chr3_1:68761620-68761639 | None:intergenic | 40.0% | |
| ! | GGACTGAACTTGTTTCATCA+TGG | + | chr3_1:68761694-68761713 | None:intergenic | 40.0% |
| !! | AATCATTGCTCGAAGTGTTG+AGG | - | chr3_1:68761785-68761804 | Msa0370810:three_prime_UTR | 40.0% |
| !! | ATCATTGCTCGAAGTGTTGA+GGG | - | chr3_1:68761786-68761805 | Msa0370810:three_prime_UTR | 40.0% |
| !! | CATTTGGTCTTAATCCTCCT+AGG | - | chr3_1:68761919-68761938 | Msa0370810:three_prime_UTR | 40.0% |
| GTCAAACTTTACTTAGCCCT+CGG | + | chr3_1:68761952-68761971 | None:intergenic | 40.0% | |
| CTCATGTTTAACCTGCCAAA+TGG | + | chr3_1:68762130-68762149 | None:intergenic | 40.0% | |
| ! | ATTGGAAACTACTGCTGCTT+TGG | - | chr3_1:68762158-68762177 | Msa0370810:CDS | 40.0% |
| AGATGCACATGCATCAACAA+TGG | - | chr3_1:68762746-68762765 | Msa0370810:intron | 40.0% | |
| ! | AACACAACTTTTGCATGCCA+TGG | + | chr3_1:68762798-68762817 | None:intergenic | 40.0% |
| AAACACACTTGCCAAATCTG+TGG | - | chr3_1:68762881-68762900 | Msa0370810:CDS | 40.0% | |
| CAATGTCAGGTAGTTGCTTA+AGG | + | chr3_1:68762911-68762930 | None:intergenic | 40.0% | |
| TGCACTCAATAAGCTAGTGA+AGG | - | chr3_1:68762965-68762984 | Msa0370810:CDS | 40.0% | |
| ATGACCCAATAGGTAGCAAT+AGG | + | chr3_1:68763092-68763111 | None:intergenic | 40.0% | |
| !! | TTGGGTCATCAGAAGTATTG+TGG | - | chr3_1:68763103-68763122 | Msa0370810:CDS | 40.0% |
| ! | ATGATGACCCTTCTTTTTGC+AGG | - | chr3_1:68763270-68763289 | Msa0370810:intron | 40.0% |
| ! | TGATGACCCTTCTTTTTGCA+GGG | - | chr3_1:68763271-68763290 | Msa0370810:intron | 40.0% |
| GAAATAGCCCTGCAAAAAGA+AGG | + | chr3_1:68763281-68763300 | None:intergenic | 40.0% | |
| ! | GGTTAAAGACAGCTCTTTTC+AGG | + | chr3_1:68763510-68763529 | None:intergenic | 40.0% |
| !! | TCTGGTACATCTTTTCGAGA+CGG | - | chr3_1:68763659-68763678 | Msa0370810:intron | 40.0% |
| GAGAGCCTTGATTTATGCAA+AGG | - | chr3_1:68763707-68763726 | Msa0370810:intron | 40.0% | |
| TGTAGTTCCATCTATAAGCG+GGG | + | chr3_1:68763742-68763761 | None:intergenic | 40.0% | |
| GGAATCCATACCATCTCATA+GGG | + | chr3_1:68764011-68764030 | None:intergenic | 40.0% | |
| TGGAATCCATACCATCTCAT+AGG | + | chr3_1:68764012-68764031 | None:intergenic | 40.0% | |
| GTGAGAAAGAAGAATCCTTG+TGG | - | chr3_1:68764279-68764298 | Msa0370810:CDS | 40.0% | |
| ! | TCCTTGTTGTAGATGACAGA+AGG | - | chr3_1:68764479-68764498 | Msa0370810:intron | 40.0% |
| TCCTTCTGTCATCTACAACA+AGG | + | chr3_1:68764483-68764502 | None:intergenic | 40.0% | |
| GAGTTAGAGATGGTCTATGT+AGG | - | chr3_1:68764593-68764612 | Msa0370810:intron | 40.0% | |
| TCAGCACAAACAACTTTCTG+AGG | + | chr3_1:68765037-68765056 | None:intergenic | 40.0% | |
| TACTAGCTGGCAAGCTATTA+AGG | - | chr3_1:68765473-68765492 | Msa0370810:CDS | 40.0% | |
| ! | ATCGATTTCACGACCATCAG+GGG | + | chr3_1:68761724-68761743 | None:intergenic | 45.0% |
| !! | CATCGATTTCACGACCATCA+GGG | + | chr3_1:68761725-68761744 | None:intergenic | 45.0% |
| !! | ACATCGATTTCACGACCATC+AGG | + | chr3_1:68761726-68761745 | None:intergenic | 45.0% |
| ! | GCATGCATGCATGTGTCATT+TGG | - | chr3_1:68761903-68761922 | Msa0370810:three_prime_UTR | 45.0% |
| ATTCGATATGCTTGATGCGC+TGG | - | chr3_1:68762185-68762204 | Msa0370810:CDS | 45.0% | |
| CAGCTATCATGCAAATGCTC+TGG | - | chr3_1:68762717-68762736 | Msa0370810:intron | 45.0% | |
| CTATCATGCAAATGCTCTGG+AGG | - | chr3_1:68762720-68762739 | Msa0370810:intron | 45.0% | |
| CATGCCATGGATAGCTAGAT+AGG | + | chr3_1:68762785-68762804 | None:intergenic | 45.0% | |
| CTTAAGGAGAGCCACAGATT+TGG | + | chr3_1:68762895-68762914 | None:intergenic | 45.0% | |
| TGAGCACTTGCAACAGACAT+AGG | + | chr3_1:68763065-68763084 | None:intergenic | 45.0% | |
| TTTCATCAGCCTCAGAAGCA+TGG | - | chr3_1:68763297-68763316 | Msa0370810:intron | 45.0% | |
| ! | TTCATCAGCCTCAGAAGCAT+GGG | - | chr3_1:68763298-68763317 | Msa0370810:intron | 45.0% |
| AGATAACTCCCATGCTTCTG+AGG | + | chr3_1:68763309-68763328 | None:intergenic | 45.0% | |
| ! | CTTGGTAGCAAAGAGCAAGT+TGG | + | chr3_1:68763376-68763395 | None:intergenic | 45.0% |
| GCTCTTTGCTACCAAGCTAT+AGG | - | chr3_1:68763380-68763399 | Msa0370810:CDS | 45.0% | |
| TAACAATCGCGTCCTTACTC+TGG | - | chr3_1:68763600-68763619 | Msa0370810:intron | 45.0% | |
| GATATTCCCCCGCTTATAGA+TGG | - | chr3_1:68763732-68763751 | Msa0370810:CDS | 45.0% | |
| GTAGTTCCATCTATAAGCGG+GGG | + | chr3_1:68763741-68763760 | None:intergenic | 45.0% | |
| AGACACCCTATGAGATGGTA+TGG | - | chr3_1:68764003-68764022 | Msa0370810:CDS | 45.0% | |
| GATGGTATGGATTCCAGTTG+TGG | - | chr3_1:68764016-68764035 | Msa0370810:CDS | 45.0% | |
| !! | CATGTTGCTTTGTCCACAAC+TGG | + | chr3_1:68764032-68764051 | None:intergenic | 45.0% |
| CAGTTGTGGACAAAGCAACA+TGG | - | chr3_1:68764030-68764049 | Msa0370810:CDS | 45.0% | |
| CTAGTAGCTCTTGATCCACA+AGG | - | chr3_1:68764188-68764207 | Msa0370810:CDS | 45.0% | |
| TGGGAAGACAATCTTCCTTG+TGG | + | chr3_1:68764206-68764225 | None:intergenic | 45.0% | |
| CCAAATCTCTTGCTTCCACA+AGG | + | chr3_1:68764297-68764316 | None:intergenic | 45.0% | |
| CCTTGTGGAAGCAAGAGATT+TGG | - | chr3_1:68764294-68764313 | Msa0370810:CDS | 45.0% | |
| ! | AGCCTTGAGTTGCTTGTTGA+TGG | - | chr3_1:68764317-68764336 | Msa0370810:CDS | 45.0% |
| TGCCATCAACAAGCAACTCA+AGG | + | chr3_1:68764322-68764341 | None:intergenic | 45.0% | |
| !!! | TGGCATTGATCCTGCACTTT+TGG | - | chr3_1:68764337-68764356 | Msa0370810:CDS | 45.0% |
| ! | TTGATCCTGCACTTTTGGAC+TGG | - | chr3_1:68764342-68764361 | Msa0370810:CDS | 45.0% |
| ! | TGATCCTGCACTTTTGGACT+GGG | - | chr3_1:68764343-68764362 | Msa0370810:CDS | 45.0% |
| TAGCAACCTCGAGTTAGAGA+TGG | - | chr3_1:68764583-68764602 | Msa0370810:intron | 45.0% | |
| CATAGACCATCTCTAACTCG+AGG | + | chr3_1:68764592-68764611 | None:intergenic | 45.0% | |
| ATGACAGTGCTTAGCTTCGA+CGG | - | chr3_1:68764797-68764816 | Msa0370810:intron | 45.0% | |
| GGTTGGGCAATATTCTGTAG+AGG | - | chr3_1:68764830-68764849 | Msa0370810:intron | 45.0% | |
| CTGTAGAGGACCATCTGAAA+TGG | - | chr3_1:68764844-68764863 | Msa0370810:intron | 45.0% | |
| ! | AGGACCATCTGAAATGGCTA+GGG | - | chr3_1:68764850-68764869 | Msa0370810:intron | 45.0% |
| TTAGCCCTAGCCATTTCAGA+TGG | + | chr3_1:68764857-68764876 | None:intergenic | 45.0% | |
| ! | TCTGAAATGGCTAGGGCTAA+AGG | - | chr3_1:68764857-68764876 | Msa0370810:intron | 45.0% |
| ! | CTTATTCTTCCTGGGAGTAC+TGG | - | chr3_1:68765004-68765023 | Msa0370810:intron | 45.0% |
| TGCTGAATGTGGTCGTCAAA+TGG | - | chr3_1:68765051-68765070 | Msa0370810:intron | 45.0% | |
| ! | ACGTACAATTGGTGACTGCA+GGG | + | chr3_1:68765138-68765157 | None:intergenic | 45.0% |
| TCATGCAGTCAACACATCGA+TGG | + | chr3_1:68765242-68765261 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTAAATGATAATTA+AGG | - | chr3_1:68763239-68763258 | Msa0370810:intron | 5.0% |
| !! | TTAATTATGTTATATTTATA+GGG | - | chr3_1:68765369-68765388 | Msa0370810:CDS | 5.0% |
| !! | TCATGCAAATGCTCTGGAGG+TGG | - | chr3_1:68762723-68762742 | Msa0370810:intron | 50.0% |
| GCACTTGCAACAGACATAGG+AGG | + | chr3_1:68763062-68763081 | None:intergenic | 50.0% | |
| ! | CATACCCAGTCCAAAAGTGC+AGG | + | chr3_1:68764350-68764369 | None:intergenic | 50.0% |
| ATGGAGGCGAAGATCTAGAG+TGG | - | chr3_1:68764519-68764538 | Msa0370810:intron | 50.0% | |
| ! | GAGGACCATCTGAAATGGCT+AGG | - | chr3_1:68764849-68764868 | Msa0370810:intron | 50.0% |
| !! | ATTCTTCCTGGGAGTACTGG+TGG | - | chr3_1:68765007-68765026 | Msa0370810:intron | 50.0% |
| TGCAGGGAATCACGATTCGA+CGG | + | chr3_1:68765122-68765141 | None:intergenic | 50.0% | |
| ! | CACGTACAATTGGTGACTGC+AGG | + | chr3_1:68765139-68765158 | None:intergenic | 50.0% |
| TCACACAATCAGCGCATCAG+TGG | - | chr3_1:68765160-68765179 | Msa0370810:intron | 50.0% | |
| GAAGCAGCTGATAACTGGCG+AGG | + | chr3_1:68761615-68761634 | None:intergenic | 55.0% | |
| GGGTGAGACACCCTATGAGA+TGG | - | chr3_1:68763998-68764017 | Msa0370810:CDS | 55.0% | |
| AGCTTCGACGGTAGTGATCG+AGG | - | chr3_1:68764809-68764828 | Msa0370810:intron | 55.0% | |
| TCGACGGTAGTGATCGAGGT+TGG | - | chr3_1:68764813-68764832 | Msa0370810:intron | 55.0% | |
| CGACGGTAGTGATCGAGGTT+GGG | - | chr3_1:68764814-68764833 | Msa0370810:intron | 55.0% | |
| GGTATTCCACCAGTACTCCC+AGG | + | chr3_1:68765016-68765035 | None:intergenic | 55.0% | |
| GCAGGGAATCACGATTCGAC+GGG | + | chr3_1:68765121-68765140 | None:intergenic | 55.0% | |
| CAGTCCACTCATGCCCCTGA+TGG | - | chr3_1:68761708-68761727 | Msa0370810:three_prime_UTR | 60.0% | |
| ! | ACGACCATCAGGGGCATGAG+TGG | + | chr3_1:68761715-68761734 | None:intergenic | 60.0% |
| TCCTCCTAGGAGTTCAGCCG+AGG | - | chr3_1:68761932-68761951 | Msa0370810:three_prime_UTR | 60.0% | |
| CCTCCTAGGAGTTCAGCCGA+GGG | - | chr3_1:68761933-68761952 | Msa0370810:three_prime_UTR | 60.0% | |
| TAGCCCTCGGCTGAACTCCT+AGG | + | chr3_1:68761939-68761958 | None:intergenic | 60.0% | |
| GGGTCACGAACACTGTGCCA+TGG | + | chr3_1:68764101-68764120 | None:intergenic | 60.0% | |
| CCCTCGGCTGAACTCCTAGG+AGG | + | chr3_1:68761936-68761955 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 68761548 | 68765584 | 68761548 | ID=Msa0370810;Name=Msa0370810 |
| chr3_1 | mRNA | 68761548 | 68765584 | 68761548 | ID=Msa0370810-mRNA-1;Parent=Msa0370810;Name=Msa0370810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=49|1|1|1|0.85|0.75|8|441|706 |
| chr3_1 | exon | 68761548 | 68761570 | 68761548 | ID=Msa0370810-mRNA-1:exon:14505;Parent=Msa0370810-mRNA-1 |
| chr3_1 | exon | 68761606 | 68762641 | 68761606 | ID=Msa0370810-mRNA-1:exon:14504;Parent=Msa0370810-mRNA-1 |
| chr3_1 | exon | 68762768 | 68763247 | 68762768 | ID=Msa0370810-mRNA-1:exon:14503;Parent=Msa0370810-mRNA-1 |
| chr3_1 | exon | 68763362 | 68763504 | 68763362 | ID=Msa0370810-mRNA-1:exon:14502;Parent=Msa0370810-mRNA-1 |
| chr3_1 | exon | 68763731 | 68763840 | 68763731 | ID=Msa0370810-mRNA-1:exon:14501;Parent=Msa0370810-mRNA-1 |
| chr3_1 | exon | 68763964 | 68764412 | 68763964 | ID=Msa0370810-mRNA-1:exon:14500;Parent=Msa0370810-mRNA-1 |
| chr3_1 | exon | 68764896 | 68764994 | 68764896 | ID=Msa0370810-mRNA-1:exon:14499;Parent=Msa0370810-mRNA-1 |
| chr3_1 | exon | 68765314 | 68765584 | 68765314 | ID=Msa0370810-mRNA-1:exon:14498;Parent=Msa0370810-mRNA-1 |
| chr3_1 | five_prime_UTR | 68765536 | 68765584 | 68765536 | ID=Msa0370810-mRNA-1:five_prime_utr;Parent=Msa0370810-mRNA-1 |
| chr3_1 | CDS | 68765314 | 68765535 | 68765314 | ID=Msa0370810-mRNA-1:cds;Parent=Msa0370810-mRNA-1 |
| chr3_1 | CDS | 68764896 | 68764994 | 68764896 | ID=Msa0370810-mRNA-1:cds;Parent=Msa0370810-mRNA-1 |
| chr3_1 | CDS | 68763964 | 68764412 | 68763964 | ID=Msa0370810-mRNA-1:cds;Parent=Msa0370810-mRNA-1 |
| chr3_1 | CDS | 68763731 | 68763840 | 68763731 | ID=Msa0370810-mRNA-1:cds;Parent=Msa0370810-mRNA-1 |
| chr3_1 | CDS | 68763362 | 68763504 | 68763362 | ID=Msa0370810-mRNA-1:cds;Parent=Msa0370810-mRNA-1 |
| chr3_1 | CDS | 68762768 | 68763247 | 68762768 | ID=Msa0370810-mRNA-1:cds;Parent=Msa0370810-mRNA-1 |
| chr3_1 | CDS | 68762024 | 68762641 | 68762024 | ID=Msa0370810-mRNA-1:cds;Parent=Msa0370810-mRNA-1 |
| chr3_1 | three_prime_UTR | 68761606 | 68762023 | 68761606 | ID=Msa0370810-mRNA-1:three_prime_utr;Parent=Msa0370810-mRNA-1 |
| chr3_1 | three_prime_UTR | 68761548 | 68761570 | 68761548 | ID=Msa0370810-mRNA-1:three_prime_utr;Parent=Msa0370810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
