Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460550 | XP_013460978.1 | 99.150 | 706 | 6 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460550 | sp|Q9SS87|SEOB_ARATH | 40.305 | 722 | 402 | 11 | 4 | 704 | 14 | 727 | 0.0 | 552 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460550 | A0A072UZM7 | 99.150 | 706 | 6 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1459 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0460550 | 0.914003 | 3.187908e-84 | -8.615850e-47 |
| Msa0029960 | Msa0460550 | 0.854088 | 1.553909e-61 | -8.615850e-47 |
| Msa0029970 | Msa0460550 | 0.869931 | 2.138246e-66 | -8.615850e-47 |
| Msa0043290 | Msa0460550 | 0.807658 | 4.539231e-50 | -8.615850e-47 |
| Msa0061350 | Msa0460550 | 0.837662 | 4.554429e-57 | -8.615850e-47 |
| Msa0064120 | Msa0460550 | 0.905181 | 5.627033e-80 | -8.615850e-47 |
| Msa0071840 | Msa0460550 | 0.800182 | 1.624828e-48 | -8.615850e-47 |
| Msa0071850 | Msa0460550 | 0.906040 | 2.268501e-80 | -8.615850e-47 |
| Msa0071860 | Msa0460550 | 0.899066 | 2.862462e-77 | -8.615850e-47 |
| Msa0071880 | Msa0460550 | 0.812427 | 4.262763e-51 | -8.615850e-47 |
| Msa0108880 | Msa0460550 | 0.917084 | 8.161997e-86 | -8.615850e-47 |
| Msa0125200 | Msa0460550 | 0.861150 | 1.255620e-63 | -8.615850e-47 |
| Msa0125210 | Msa0460550 | 0.876938 | 9.373400e-69 | -8.615850e-47 |
| Msa0137210 | Msa0460550 | 0.818305 | 2.100924e-52 | -8.615850e-47 |
| Msa0155180 | Msa0460550 | 0.887449 | 1.413351e-72 | -8.615850e-47 |
| Msa0159590 | Msa0460550 | 0.802897 | 4.509968e-49 | -8.615850e-47 |
| Msa0164400 | Msa0460550 | 0.835981 | 1.222558e-56 | -8.615850e-47 |
| Msa0188610 | Msa0460550 | 0.822835 | 1.914645e-53 | -8.615850e-47 |
| Msa0194820 | Msa0460550 | 0.833399 | 5.453705e-56 | -8.615850e-47 |
| Msa0194840 | Msa0460550 | 0.825950 | 3.543333e-54 | -8.615850e-47 |
| Msa0213030 | Msa0460550 | 0.816163 | 6.370086e-52 | -8.615850e-47 |
| Msa0230800 | Msa0460550 | 0.817400 | 3.362942e-52 | -8.615850e-47 |
| Msa0230870 | Msa0460550 | 0.819931 | 8.961155e-53 | -8.615850e-47 |
| Msa0370810 | Msa0460550 | 0.808425 | 3.117297e-50 | -8.615850e-47 |
| Msa0382530 | Msa0460550 | 0.813852 | 2.075307e-51 | -8.615850e-47 |
| Msa0405680 | Msa0460550 | 0.826884 | 2.123439e-54 | -8.615850e-47 |
| Msa0415610 | Msa0460550 | 0.810168 | 1.317908e-50 | -8.615850e-47 |
| Msa0418970 | Msa0460550 | 0.962212 | 1.311283e-120 | -8.615850e-47 |
| Msa0424490 | Msa0460550 | 0.807738 | 4.364771e-50 | -8.615850e-47 |
| Msa0432320 | Msa0460550 | 0.823472 | 1.360016e-53 | -8.615850e-47 |
| Msa0460550 | Msa0460630 | 0.832159 | 1.108444e-55 | -8.615850e-47 |
| Msa0460550 | Msa0465400 | 0.820371 | 7.105614e-53 | -8.615850e-47 |
| Msa0460550 | Msa0471460 | 0.818975 | 1.480276e-52 | -8.615850e-47 |
| Msa0460550 | Msa0471540 | 0.815373 | 9.556510e-52 | -8.615850e-47 |
| Msa0460550 | Msa0482080 | 0.806359 | 8.546227e-50 | -8.615850e-47 |
| Msa0460550 | Msa0510480 | 0.807281 | 5.456144e-50 | -8.615850e-47 |
| Msa0460550 | Msa0525210 | 0.816587 | 5.119914e-52 | -8.615850e-47 |
| Msa0460550 | Msa0526010 | 0.839284 | 1.737380e-57 | -8.615850e-47 |
| Msa0460550 | Msa0562620 | 0.833419 | 5.391970e-56 | -8.615850e-47 |
| Msa0460550 | Msa0579780 | 0.813047 | 3.119156e-51 | -8.615850e-47 |
| Msa0460550 | Msa0609300 | 0.824374 | 8.356939e-54 | -8.615850e-47 |
| Msa0460550 | Msa0616510 | 0.817519 | 3.162018e-52 | -8.615850e-47 |
| Msa0460550 | Msa0622110 | 0.839406 | 1.614982e-57 | -8.615850e-47 |
| Msa0460550 | Msa0649840 | 0.844127 | 9.162257e-59 | -8.615850e-47 |
| Msa0460550 | Msa0657440 | 0.808241 | 3.412382e-50 | -8.615850e-47 |
| Msa0460550 | Msa0691910 | 0.826120 | 3.229171e-54 | -8.615850e-47 |
| Msa0460550 | Msa0699840 | 0.834055 | 3.738848e-56 | -8.615850e-47 |
| Msa0460550 | Msa0703770 | 0.801992 | 6.931376e-49 | -8.615850e-47 |
| Msa0460550 | Msa0713960 | 0.800955 | 1.130248e-48 | -8.615850e-47 |
| Msa0460550 | Msa0738700 | 0.802372 | 5.789877e-49 | -8.615850e-47 |
| Msa0460550 | Msa0740090 | 0.804213 | 2.406537e-49 | -8.615850e-47 |
| Msa0460550 | Msa0782750 | 0.816913 | 4.328265e-52 | -8.615850e-47 |
| Msa0460550 | Msa0820380 | 0.812376 | 4.374179e-51 | -8.615850e-47 |
| Msa0460550 | Msa0859290 | 0.801622 | 8.253725e-49 | -8.615850e-47 |
| Msa0460550 | Msa0894790 | 0.806764 | 7.021309e-50 | -8.615850e-47 |
| Msa0460550 | Msa0931590 | 0.800914 | 1.152257e-48 | -8.615850e-47 |
| Msa0460550 | Msa0960260 | 0.807229 | 5.596948e-50 | -8.615850e-47 |
| Msa0460550 | Msa1014320 | 0.852450 | 4.579545e-61 | -8.615850e-47 |
| Msa0460550 | Msa1021780 | 0.811942 | 5.438584e-51 | -8.615850e-47 |
| Msa0460550 | Msa1042160 | 0.819301 | 1.248110e-52 | -8.615850e-47 |
| Msa0460550 | Msa1042190 | 0.820321 | 7.297394e-53 | -8.615850e-47 |
| Msa0460550 | Msa1055310 | 0.840824 | 6.887760e-58 | -8.615850e-47 |
| Msa0460550 | Msa1078880 | 0.805820 | 1.109669e-49 | -8.615850e-47 |
| Msa0460550 | Msa1127960 | 0.809883 | 1.518454e-50 | -8.615850e-47 |
| Msa0460550 | Msa1167470 | 0.813935 | 1.989847e-51 | -8.615850e-47 |
| Msa0460550 | Msa1169190 | 0.804607 | 1.991740e-49 | -8.615850e-47 |
| Msa0460550 | Msa1183980 | 0.806025 | 1.005012e-49 | -8.615850e-47 |
| Msa0460550 | Msa1187760 | 0.806425 | 8.279708e-50 | -8.615850e-47 |
| Msa0460550 | Msa1198540 | 0.800490 | 1.406184e-48 | -8.615850e-47 |
| Msa0460550 | Msa1209320 | 0.818819 | 1.606506e-52 | -8.615850e-47 |
| Msa0460550 | Msa1209720 | 0.804224 | 2.393467e-49 | -8.615850e-47 |
| Msa0460550 | Msa1228420 | 0.808370 | 3.202676e-50 | -8.615850e-47 |
| Msa0460550 | Msa1268630 | 0.822731 | 2.024406e-53 | -8.615850e-47 |
| Msa0460550 | Msa1304950 | 0.837931 | 3.884729e-57 | -8.615850e-47 |
| Msa0460550 | Msa1341890 | 0.819112 | 1.377818e-52 | -8.615850e-47 |
| Msa0460550 | Msa1367840 | 0.800193 | 1.616489e-48 | -8.615850e-47 |
| Msa0460550 | Msa1400010 | 0.815835 | 7.540270e-52 | -8.615850e-47 |
| Msa0460550 | Msa1405340 | 0.805251 | 1.460948e-49 | -8.615850e-47 |
| Msa0460550 | Msa1429860 | 0.829644 | 4.587737e-55 | -8.615850e-47 |
| Msa0460550 | Msa1433790 | 0.823554 | 1.301437e-53 | -8.615850e-47 |
| Msa0460550 | Msa1435630 | 0.813471 | 2.516968e-51 | -8.615850e-47 |
| Msa0270340 | Msa0460550 | 0.809906 | 1.500674e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460550 | MtrunA17_Chr3g0116601 | 99.150 | 706 | 6 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1459 |
| Msa0460550 | MtrunA17_Chr8g0381301 | 52.422 | 702 | 320 | 8 | 15 | 706 | 7 | 704 | 0.0 | 744 |
| Msa0460550 | MtrunA17_Chr7g0226571 | 45.364 | 701 | 367 | 11 | 17 | 704 | 12 | 709 | 0.0 | 601 |
| Msa0460550 | MtrunA17_Chr1g0186841 | 32.558 | 688 | 404 | 17 | 27 | 704 | 24 | 661 | 3.34e-108 | 343 |
| Msa0460550 | MtrunA17_Chr1g0187041 | 33.578 | 682 | 400 | 21 | 30 | 704 | 26 | 661 | 1.40e-104 | 333 |
| Msa0460550 | MtrunA17_Chr1g0186851 | 31.241 | 685 | 416 | 19 | 27 | 704 | 23 | 659 | 6.54e-103 | 329 |
| Msa0460550 | MtrunA17_Chr1g0186861 | 31.014 | 690 | 413 | 21 | 27 | 704 | 23 | 661 | 1.93e-99 | 320 |
| Msa0460550 | MtrunA17_Chr1g0186911 | 32.343 | 606 | 354 | 19 | 108 | 704 | 1 | 559 | 2.99e-94 | 303 |
| Msa0460550 | MtrunA17_Chr1g0165791 | 28.161 | 696 | 429 | 22 | 30 | 704 | 31 | 676 | 6.17e-77 | 261 |
| Msa0460550 | MtrunA17_Chr1g0186981 | 25.648 | 694 | 425 | 24 | 30 | 704 | 40 | 661 | 2.15e-56 | 204 |
| Msa0460550 | MtrunA17_Chr1g0186991 | 25.634 | 710 | 414 | 26 | 29 | 704 | 36 | 665 | 2.33e-53 | 195 |
| Msa0460550 | MtrunA17_Chr1g0187001 | 26.174 | 703 | 408 | 26 | 29 | 704 | 16 | 634 | 6.36e-49 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460550 | AT3G01680.1 | 40.305 | 722 | 402 | 11 | 4 | 704 | 14 | 727 | 0.0 | 552 |
| Msa0460550 | AT3G01670.1 | 36.908 | 718 | 400 | 11 | 19 | 706 | 128 | 822 | 1.44e-152 | 463 |
| Msa0460550 | AT3G01670.2 | 36.908 | 718 | 400 | 11 | 19 | 706 | 152 | 846 | 2.67e-152 | 463 |
| Msa0460550 | AT1G67790.1 | 29.387 | 701 | 435 | 20 | 22 | 702 | 4 | 664 | 1.09e-95 | 310 |
Find 150 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATTATGTTATATTTAT+AGG | 0.156084 | 3_3:-58017168 | Msa0460550:three_prime_UTR |
| ACTTCTTCATATATTTATTT+AGG | 0.163382 | 3_3:-58017211 | Msa0460550:three_prime_UTR |
| GATATGGATTTGGGGAAATT+TGG | 0.167832 | 3_3:-58018295 | Msa0460550:CDS |
| TCAAGATTTCATCAACAATT+TGG | 0.168351 | 3_3:+58020724 | None:intergenic |
| TGACATCAATTTGGTTCTTT+TGG | 0.182104 | 3_3:-58017840 | Msa0460550:CDS |
| TGGCATTGATCCTGCACTTT+TGG | 0.203402 | 3_3:-58018199 | Msa0460550:CDS |
| CAATGTCAGGTAGTTGTTTA+AGG | 0.206044 | 3_3:+58019579 | None:intergenic |
| TAGATGGAACTACAAAATTA+AGG | 0.217891 | 3_3:-58018788 | Msa0460550:CDS |
| TACTAGCTGGCAAGCTATTA+AGG | 0.226546 | 3_3:-58017063 | Msa0460550:three_prime_UTR |
| CTCTTCACATGATATGGATT+TGG | 0.242306 | 3_3:-58018305 | Msa0460550:CDS |
| AGCATTGAATGATTATATTA+AGG | 0.248515 | 3_3:-58017584 | Msa0460550:CDS |
| TTCCAAACGTGACATCAATT+TGG | 0.261192 | 3_3:-58017849 | Msa0460550:CDS |
| ATATCATGTGAAGAGCATTT+TGG | 0.277867 | 3_3:+58018313 | None:intergenic |
| AAAATGCTCTTCACATGATA+TGG | 0.284577 | 3_3:-58018311 | Msa0460550:CDS |
| TTAATTATGTTATATTTATA+GGG | 0.288088 | 3_3:-58017167 | Msa0460550:three_prime_UTR |
| TCTTCACATGATATGGATTT+GGG | 0.291284 | 3_3:-58018304 | Msa0460550:CDS |
| ATATTCCTATTGCTACCTAT+TGG | 0.303164 | 3_3:-58019403 | Msa0460550:CDS |
| TATTGAGGCATTTCTCTATC+TGG | 0.308636 | 3_3:-58018895 | Msa0460550:CDS |
| TGTAATAGGCTTATTCTTCC+TGG | 0.311032 | 3_3:-58017541 | Msa0460550:CDS |
| TATTCCTATTGCTACCTATT+GGG | 0.336914 | 3_3:-58019402 | Msa0460550:CDS |
| AGCAACCACATCATTGTAAT+AGG | 0.338223 | 3_3:-58017555 | Msa0460550:CDS |
| CATGTTGCTTTGTCCACAAC+TGG | 0.342091 | 3_3:+58018507 | None:intergenic |
| CATGTGCATTGTTGAATTCA+AGG | 0.348701 | 3_3:-58019483 | Msa0460550:CDS |
| AGCCTTGAGTTGCTTGTTGA+TGG | 0.355975 | 3_3:-58018219 | Msa0460550:CDS |
| TCACAAATTGCAAGTCTCAT+AGG | 0.363224 | 3_3:-58019353 | Msa0460550:CDS |
| AACCAAATTGATGTCACGTT+TGG | 0.365900 | 3_3:+58017847 | None:intergenic |
| TGTTAGAAGCAGCTGATAAC+TGG | 0.369862 | 3_3:+58020865 | None:intergenic |
| AGATGGAACTACAAAATTAA+GGG | 0.376780 | 3_3:-58018787 | Msa0460550:intron |
| GTTATTTATTTATTTATGTA+AGG | 0.378553 | 3_3:-58017106 | Msa0460550:three_prime_UTR |
| CCTTGTGGAAGCAAGAGATT+TGG | 0.382186 | 3_3:-58018242 | Msa0460550:CDS |
| CTTATTCTTCCTGGGAGTAC+TGG | 0.385929 | 3_3:-58017532 | Msa0460550:CDS |
| TCTTCTTTCTCACTTGTGAA+TGG | 0.389160 | 3_3:+58018267 | None:intergenic |
| GCTCTTTGCTACCAAGCTAT+AGG | 0.395639 | 3_3:-58019109 | Msa0460550:intron |
| ATTGGAAACTACTGCTGCTT+TGG | 0.396203 | 3_3:-58020328 | Msa0460550:CDS |
| TATTTAGGTTTGAATAATGT+TGG | 0.397447 | 3_3:-58017196 | Msa0460550:three_prime_UTR |
| ATTAGCAAGCTTAAAACAAA+TGG | 0.403682 | 3_3:+58017030 | None:intergenic |
| ACTGAATTTCTTGTTGTTGA+AGG | 0.404691 | 3_3:+58017879 | None:intergenic |
| TCATCAACAATTTGGATAAG+TGG | 0.405497 | 3_3:+58020732 | None:intergenic |
| TTTAAGGAGAGCCACAGATT+TGG | 0.410648 | 3_3:+58019595 | None:intergenic |
| AGTGACTTTGTGAGCAAGAC+TGG | 0.411930 | 3_3:+58019162 | None:intergenic |
| CATGCCATGGATAGCTAGAT+AGG | 0.425221 | 3_3:+58019705 | None:intergenic |
| ACATCGATTTCACGACCATC+AGG | 0.425726 | 3_3:+58020759 | None:intergenic |
| ATTTATTTATTTATGTAAGG+TGG | 0.434886 | 3_3:-58017103 | Msa0460550:three_prime_UTR |
| ATGACCCAATAGGTAGCAAT+AGG | 0.437496 | 3_3:+58019398 | None:intergenic |
| TTTATTTATTTATGTAAGGT+GGG | 0.442583 | 3_3:-58017102 | Msa0460550:three_prime_UTR |
| CTGTAGAGGACCATCTGAAA+TGG | 0.452637 | 3_3:-58017692 | Msa0460550:CDS |
| AAATGTTTATGTTTACTAGC+TGG | 0.453019 | 3_3:-58017076 | Msa0460550:three_prime_UTR |
| GTAATAGGCTTATTCTTCCT+GGG | 0.465122 | 3_3:-58017540 | Msa0460550:CDS |
| TAGGATTGAACAAGATGGTT+GGG | 0.467822 | 3_3:-58017611 | Msa0460550:CDS |
| TGCTGAATGTGGTCGTCAAA+TGG | 0.468093 | 3_3:-58017485 | Msa0460550:CDS |
| ACAGAATTCTCTGCAATGTC+AGG | 0.472157 | 3_3:+58019566 | None:intergenic |
| CAGCTATCATGCAAATGCTC+TGG | 0.476086 | 3_3:-58019770 | Msa0460550:CDS |
| CACTAGCCATGTTACTGAAA+AGG | 0.478680 | 3_3:+58020898 | None:intergenic |
| TTAATATAATCATTCAATGC+TGG | 0.481704 | 3_3:+58017586 | None:intergenic |
| TCTGAAATGGCTAGGGCTAA+AGG | 0.482330 | 3_3:-58017679 | Msa0460550:CDS |
| CGACGGTAGTGACCGAGGTT+GGG | 0.484160 | 3_3:-58017722 | Msa0460550:CDS |
| AATACTTCTGATGACCCAAT+AGG | 0.487922 | 3_3:+58019388 | None:intergenic |
| ATTCGATATGCTTGATGCGC+TGG | 0.489847 | 3_3:-58020301 | Msa0460550:CDS |
| TTTGTAGTTCCATCTATAAG+TGG | 0.489901 | 3_3:+58018795 | None:intergenic |
| CACGTACAATTGGTGACTGC+AGG | 0.489917 | 3_3:+58017400 | None:intergenic |
| ATCATTGCTCGAAGTGTTGA+GGG | 0.490421 | 3_3:-58020696 | Msa0460550:CDS |
| TATACAAAGATGCTAGATCA+AGG | 0.490563 | 3_3:-58018560 | Msa0460550:CDS |
| TTGATATACTTAATCACTGA+TGG | 0.491113 | 3_3:+58018402 | None:intergenic |
| AGCCTTCACAAGCTTGTTGA+GGG | 0.497030 | 3_3:+58019520 | None:intergenic |
| CACAAATTGCAAGTCTCATA+GGG | 0.500466 | 3_3:-58019352 | Msa0460550:CDS |
| TCCTTGTTGTAGATGACAGA+AGG | 0.509373 | 3_3:-58018057 | Msa0460550:intron |
| AGACACACTATGAGATGGTA+TGG | 0.509954 | 3_3:-58018533 | Msa0460550:CDS |
| TAACAGAATGCAGCTAAAGA+AGG | 0.515235 | 3_3:-58020847 | Msa0460550:CDS |
| ATTGTGTGAACACGTACAAT+TGG | 0.519407 | 3_3:+58017390 | None:intergenic |
| ATCGTCCTTTGCATAAATCA+AGG | 0.519868 | 3_3:+58018824 | None:intergenic |
| ACTGATGGTTCAATAATGAA+AGG | 0.522705 | 3_3:+58018417 | None:intergenic |
| TCATGCAAATGCTCTGGAGG+TGG | 0.523089 | 3_3:-58019764 | Msa0460550:CDS |
| AATAACAGCAAATGCTGCTA+AGG | 0.524767 | 3_3:+58019667 | None:intergenic |
| GAGAGCCTTGATTTATGCAA+AGG | 0.526390 | 3_3:-58018829 | Msa0460550:CDS |
| GAGGACCATCTGAAATGGCT+AGG | 0.526776 | 3_3:-58017687 | Msa0460550:CDS |
| TTATTTATTTATGTAAGGTG+GGG | 0.528343 | 3_3:-58017101 | Msa0460550:three_prime_UTR |
| TTGTAGTTCCATCTATAAGT+GGG | 0.528941 | 3_3:+58018796 | None:intergenic |
| ATTCTTCCTGGGAGTACTGG+TGG | 0.530375 | 3_3:-58017529 | Msa0460550:CDS |
| AATCATTGCTCGAAGTGTTG+AGG | 0.530438 | 3_3:-58020697 | Msa0460550:CDS |
| CAGTCCACTCATGCCCCTGA+TGG | 0.532299 | 3_3:-58020774 | Msa0460550:CDS |
| AGGTTAGTCTTGAAGTACTA+AGG | 0.533267 | 3_3:-58018653 | Msa0460550:CDS |
| GAGTTAGAGATGGTCTATGT+AGG | 0.535445 | 3_3:-58017943 | Msa0460550:CDS |
| CAGCCTTCACAAGCTTGTTG+AGG | 0.540942 | 3_3:+58019519 | None:intergenic |
| TCGACGGTAGTGACCGAGGT+TGG | 0.542386 | 3_3:-58017723 | Msa0460550:CDS |
| TTTCATCAGCCTCAGAAGCA+TGG | 0.544045 | 3_3:-58019192 | Msa0460550:CDS |
| CTGATGGTTCAATAATGAAA+GGG | 0.546133 | 3_3:+58018418 | None:intergenic |
| TTCATCAGCCTCAGAAGCAT+GGG | 0.546942 | 3_3:-58019191 | Msa0460550:CDS |
| TGAGCACTTGCAACAGACAT+AGG | 0.550601 | 3_3:+58019425 | None:intergenic |
| GGACTGAACTTGTTTCATCA+TGG | 0.553456 | 3_3:+58020791 | None:intergenic |
| TAAACATGAGACAGATACAT+TGG | 0.555533 | 3_3:-58020346 | Msa0460550:CDS |
| TGCAGGGAATCACGATTCGA+CGG | 0.556317 | 3_3:+58017417 | None:intergenic |
| TGGGAGGACAATCTTCCTTG+TGG | 0.557269 | 3_3:+58018333 | None:intergenic |
| CCAAATCTCTTGCTTCCACA+AGG | 0.558786 | 3_3:+58018242 | None:intergenic |
| GGATAACTCCCATGCTTCTG+AGG | 0.559482 | 3_3:+58019183 | None:intergenic |
| TTGGGTCATCAGAAGTATTG+TGG | 0.562834 | 3_3:-58019384 | Msa0460550:CDS |
| ATAGGATTGAACAAGATGGT+TGG | 0.565947 | 3_3:-58017612 | Msa0460550:CDS |
| CAATGAACTCACCTATAGCT+TGG | 0.566046 | 3_3:+58019098 | None:intergenic |
| TTAGCCCTAGCCATTTCAGA+TGG | 0.573010 | 3_3:+58017682 | None:intergenic |
| ACGACCATCAGGGGCATGAG+TGG | 0.576810 | 3_3:+58020770 | None:intergenic |
| TGCCATCAACAAGCAACTCA+AGG | 0.577841 | 3_3:+58018217 | None:intergenic |
| CTTGGTAGCAAAGAGCAAGT+TGG | 0.579238 | 3_3:+58019116 | None:intergenic |
| CTATCATGCAAATGCTCTGG+AGG | 0.582216 | 3_3:-58019767 | Msa0460550:CDS |
| ATACAAAGATGCTAGATCAA+GGG | 0.584269 | 3_3:-58018559 | Msa0460550:CDS |
| TACAAAGATGCTAGATCAAG+GGG | 0.585947 | 3_3:-58018558 | Msa0460550:CDS |
| CATCGATTTCACGACCATCA+GGG | 0.587965 | 3_3:+58020760 | None:intergenic |
| TGGATCAAGAGCTACTAGAA+TGG | 0.588037 | 3_3:+58018353 | None:intergenic |
| CATACCCAGTCCAAAAGTGC+AGG | 0.589037 | 3_3:+58018189 | None:intergenic |
| AAACACACTTGCCAAATCTG+TGG | 0.591889 | 3_3:-58019606 | Msa0460550:CDS |
| TGTAGTTCCATCTATAAGTG+GGG | 0.592031 | 3_3:+58018797 | None:intergenic |
| GCAGGGAATCACGATTCGAC+GGG | 0.592383 | 3_3:+58017418 | None:intergenic |
| AGCTTCGACGGTAGTGACCG+AGG | 0.593982 | 3_3:-58017727 | Msa0460550:CDS |
| ATGACTGTGCTTAGCTTCGA+CGG | 0.596323 | 3_3:-58017739 | Msa0460550:CDS |
| CATTAACAAAATTTCCTGTG+AGG | 0.599891 | 3_3:-58020271 | Msa0460550:intron |
| AGGACCATCTGAAATGGCTA+GGG | 0.600106 | 3_3:-58017686 | Msa0460550:CDS |
| CAGTTGTGGACAAAGCAACA+TGG | 0.602977 | 3_3:-58018506 | Msa0460550:CDS |
| TTAAGTATATCAAAGAAGTG+TGG | 0.608259 | 3_3:-58018392 | Msa0460550:CDS |
| CTTGAATTCAACAATGCACA+TGG | 0.609877 | 3_3:+58019484 | None:intergenic |
| ATTACCTATCTAGCTATCCA+TGG | 0.610258 | 3_3:-58019709 | Msa0460550:CDS |
| TACAGAATATTGCCCAACCT+CGG | 0.610840 | 3_3:+58017710 | None:intergenic |
| ACTCAAAACTACAACATGGT+AGG | 0.611324 | 3_3:-58017795 | Msa0460550:CDS |
| GTAGTTCCATCTATAAGTGG+GGG | 0.611809 | 3_3:+58018798 | None:intergenic |
| TAGCAACTTCGAGTTAGAGA+TGG | 0.613468 | 3_3:-58017953 | Msa0460550:CDS |
| CTAGTAGCTCTTGATCCACA+AGG | 0.616181 | 3_3:-58018348 | Msa0460550:CDS |
| TCAGCACAAACAACTTTCTG+AGG | 0.617186 | 3_3:+58017502 | None:intergenic |
| AGATGAGAAGAAGCATATTG+AGG | 0.618660 | 3_3:-58018910 | Msa0460550:CDS |
| GATGGTATGGATTCCAGTTG+TGG | 0.618882 | 3_3:-58018520 | Msa0460550:CDS |
| TGCCCTCAACAAGCTTGTGA+AGG | 0.619838 | 3_3:-58019522 | Msa0460550:CDS |
| ATCGATTTCACGACCATCAG+GGG | 0.621216 | 3_3:+58020761 | None:intergenic |
| GGTATTCCACCAGTACTCCC+AGG | 0.624299 | 3_3:+58017523 | None:intergenic |
| GTGAGAAAGAAGAATCCTTG+TGG | 0.628042 | 3_3:-58018257 | Msa0460550:CDS |
| TCTTCTGAAATATATTCAGA+TGG | 0.628420 | 3_3:+58019455 | None:intergenic |
| ACGTACAATTGGTGACTGCA+GGG | 0.629728 | 3_3:+58017401 | None:intergenic |
| ATGGAGGCGAAGATCTAGAG+TGG | 0.631690 | 3_3:-58018017 | Msa0460550:CDS |
| ATAAGCCTATTACAATGATG+TGG | 0.632932 | 3_3:+58017550 | None:intergenic |
| GGTTGGGCAATATTCTGTAG+AGG | 0.638960 | 3_3:-58017706 | Msa0460550:CDS |
| AAAGTTGTTTGTGCTGAATG+TGG | 0.644249 | 3_3:-58017496 | Msa0460550:CDS |
| AAAATCATATGTCTATATGG+AGG | 0.645145 | 3_3:-58018033 | Msa0460550:CDS |
| GGGTGAGACACACTATGAGA+TGG | 0.645383 | 3_3:-58018538 | Msa0460550:CDS |
| CTTCACATGATATGGATTTG+GGG | 0.646725 | 3_3:-58018303 | Msa0460550:CDS |
| AAGCATAGGATTGAACAAGA+TGG | 0.647135 | 3_3:-58017616 | Msa0460550:CDS |
| ATCTTCAATCAACAATGCCG+TGG | 0.650780 | 3_3:-58018455 | Msa0460550:CDS |
| TCATGCAGTCAACACATCGA+TGG | 0.651245 | 3_3:+58017297 | None:intergenic |
| GAAGCAGCTGATAACTGGCG+AGG | 0.655882 | 3_3:+58020870 | None:intergenic |
| GGGTCACGAACACTGTGCCA+CGG | 0.656210 | 3_3:+58018438 | None:intergenic |
| TTAGTCTTGAAGTACTAAGG+AGG | 0.660034 | 3_3:-58018650 | Msa0460550:CDS |
| TTGTTGAGGGCATCAAACTG+TGG | 0.677145 | 3_3:+58019533 | None:intergenic |
| GCACTTGCAACAGACATAGG+AGG | 0.680826 | 3_3:+58019428 | None:intergenic |
| TCACACAATCAGCGCATCAG+TGG | 0.704079 | 3_3:-58017376 | Msa0460550:three_prime_UTR |
| TTGTACTCAAAACTACAACA+TGG | 0.705926 | 3_3:-58017799 | Msa0460550:CDS |
| AGATGCACATGCATCAACAA+TGG | 0.729582 | 3_3:-58019741 | Msa0460550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGAAATGATAATTA+AGG | - | chr3_3:58018660-58018679 | Msa0460550:intron | 10.0% |
| !! | GTTAATTATGTTATATTTAT+AGG | - | chr3_3:58020742-58020761 | Msa0460550:CDS | 10.0% |
| !! | GTTATTTATTTATTTATGTA+AGG | - | chr3_3:58020804-58020823 | Msa0460550:CDS | 10.0% |
| !! | TAGTACTATTAATATGATTA+TGG | - | chr3_3:58017517-58017536 | Msa0460550:CDS | 15.0% |
| !! | ATCAATTGGAAAAATTATAT+TGG | - | chr3_3:58018117-58018136 | Msa0460550:intron | 15.0% |
| !!! | ACATAATTTGAAACTTAATT+TGG | - | chr3_3:58018841-58018860 | Msa0460550:CDS | 15.0% |
| !! | ACTTCTTCATATATTTATTT+AGG | - | chr3_3:58020699-58020718 | Msa0460550:CDS | 15.0% |
| !! | ATTTATTTATTTATGTAAGG+TGG | - | chr3_3:58020807-58020826 | Msa0460550:CDS | 15.0% |
| !! | TTTATTTATTTATGTAAGGT+GGG | - | chr3_3:58020808-58020827 | Msa0460550:CDS | 15.0% |
| !!! | TGCTTTTTTTTTTTTTTTGA+AGG | - | chr3_3:58020909-58020928 | Msa0460550:five_prime_UTR | 15.0% |
| !! | ATAAACTGGTTAAAAACAAA+TGG | + | chr3_3:58017483-58017502 | None:intergenic | 20.0% |
| !! | CAAAAACTATCTAAATAAAC+TGG | + | chr3_3:58017497-58017516 | None:intergenic | 20.0% |
| !! | AATATTTATTACTGTTGTCT+AGG | - | chr3_3:58017714-58017733 | Msa0460550:CDS | 20.0% |
| !!! | TATGACACATTTTAGTAATA+TGG | + | chr3_3:58018050-58018069 | None:intergenic | 20.0% |
| !!! | CAATTGATCATTTTCATTTT+AGG | + | chr3_3:58018105-58018124 | None:intergenic | 20.0% |
| !! | CTAAAATGAAAATGATCAAT+TGG | - | chr3_3:58018103-58018122 | Msa0460550:intron | 20.0% |
| !!! | AAGATTTTAATTAAACCATG+CGG | + | chr3_3:58019217-58019236 | None:intergenic | 20.0% |
| !! | TTAATATAATCATTCAATGC+TGG | + | chr3_3:58020327-58020346 | None:intergenic | 20.0% |
| !!! | AGCATTGAATGATTATATTA+AGG | - | chr3_3:58020326-58020345 | Msa0460550:CDS | 20.0% |
| !!! | TATTTAGGTTTGAATAATGT+TGG | - | chr3_3:58020714-58020733 | Msa0460550:CDS | 20.0% |
| !! | TTATTTATTTATGTAAGGTG+GGG | - | chr3_3:58020809-58020828 | Msa0460550:CDS | 20.0% |
| !!! | ACAACAGGGAAAATATTTTT+TGG | + | chr3_3:58016981-58017000 | None:intergenic | 25.0% |
| ! | TCAAGATTTCATCAACAATT+TGG | + | chr3_3:58017189-58017208 | None:intergenic | 25.0% |
| !! | AGTTTGACCAATGATTATTT+TGG | - | chr3_3:58017388-58017407 | Msa0460550:three_prime_UTR | 25.0% |
| !!! | ATGGTTTTTTATGTTCCATT+TGG | - | chr3_3:58017536-58017555 | Msa0460550:CDS | 25.0% |
| ! | ATGAACTTTCATGAAAGTTA+AGG | + | chr3_3:58017686-58017705 | None:intergenic | 25.0% |
| ! | AAGTATGTTAATGTCGAAAA+AGG | - | chr3_3:58017782-58017801 | Msa0460550:CDS | 25.0% |
| ! | ATCAAAAGTTAAGTTAAGAG+AGG | + | chr3_3:58017828-58017847 | None:intergenic | 25.0% |
| !!! | TGTCATTTTTGTCGAAATTT+CGG | - | chr3_3:58018070-58018089 | Msa0460550:intron | 25.0% |
| !!! | TCTTCTGAAATATATTCAGA+TGG | + | chr3_3:58018458-58018477 | None:intergenic | 25.0% |
| ! | AACACAATATCTCATAAAAG+TGG | + | chr3_3:58018895-58018914 | None:intergenic | 25.0% |
| !! | TTTAGCAATACGAAACTTTT+TGG | - | chr3_3:58018913-58018932 | Msa0460550:intron | 25.0% |
| ! | TAGATGGAACTACAAAATTA+AGG | - | chr3_3:58019122-58019141 | Msa0460550:CDS | 25.0% |
| ! | AGATGGAACTACAAAATTAA+GGG | - | chr3_3:58019123-58019142 | Msa0460550:CDS | 25.0% |
| ! | ATAAAGTCTCACAAACAAAA+GGG | + | chr3_3:58019182-58019201 | None:intergenic | 25.0% |
| ! | AATAAAGTCTCACAAACAAA+AGG | + | chr3_3:58019183-58019202 | None:intergenic | 25.0% |
| ! | TTGATATACTTAATCACTGA+TGG | + | chr3_3:58019511-58019530 | None:intergenic | 25.0% |
| ! | TTAAGTATATCAAAGAAGTG+TGG | - | chr3_3:58019518-58019537 | Msa0460550:CDS | 25.0% |
| ! | GGAAAAATCATATGTCTATA+TGG | - | chr3_3:58019874-58019893 | Msa0460550:intron | 25.0% |
| ! | AAAATCATATGTCTATATGG+AGG | - | chr3_3:58019877-58019896 | Msa0460550:intron | 25.0% |
| !!! | GTTTGAGAGATTTTGATAAA+TGG | - | chr3_3:58020271-58020290 | Msa0460550:intron | 25.0% |
| !!! | ATTTTGATAAATGGAAGCAT+AGG | - | chr3_3:58020280-58020299 | Msa0460550:CDS | 25.0% |
| ! | AAATGTTTATGTTTACTAGC+TGG | - | chr3_3:58020834-58020853 | Msa0460550:CDS | 25.0% |
| ! | ATTAGCAAGCTTAAAACAAA+TGG | + | chr3_3:58020883-58020902 | None:intergenic | 25.0% |
| ! | TTTTTGCCTTTTCAGTAACA+TGG | - | chr3_3:58017006-58017025 | Msa0460550:intron | 30.0% |
| TCATCAACAATTTGGATAAG+TGG | + | chr3_3:58017181-58017200 | None:intergenic | 30.0% | |
| ACTCTGACCAAAATAATCAT+TGG | + | chr3_3:58017398-58017417 | None:intergenic | 30.0% | |
| TAGTTAACGAGATTCAGTTA+AGG | + | chr3_3:58017450-58017469 | None:intergenic | 30.0% | |
| !!! | TTTTTTATGTTCCATTTGGC+AGG | - | chr3_3:58017540-58017559 | Msa0460550:CDS | 30.0% |
| TAAACATGAGACAGATACAT+TGG | - | chr3_3:58017564-58017583 | Msa0460550:CDS | 30.0% | |
| CATTAACAAAATTTCCTGTG+AGG | - | chr3_3:58017639-58017658 | Msa0460550:CDS | 30.0% | |
| TCATATAAAAACAACCTCAC+AGG | + | chr3_3:58017656-58017675 | None:intergenic | 30.0% | |
| TATCCTTATCTTTGATTCCA+AGG | - | chr3_3:58017852-58017871 | Msa0460550:CDS | 30.0% | |
| ! | ATGTAATTTAAAGCTGTCCT+TGG | + | chr3_3:58017872-58017891 | None:intergenic | 30.0% |
| !!! | CTGTTATTTTTGGAGAGTTT+TGG | - | chr3_3:58018258-58018277 | Msa0460550:CDS | 30.0% |
| ATATTCCTATTGCTACCTAT+TGG | - | chr3_3:58018507-58018526 | Msa0460550:CDS | 30.0% | |
| TATTCCTATTGCTACCTATT+GGG | - | chr3_3:58018508-58018527 | Msa0460550:CDS | 30.0% | |
| !! | ATACGAAACTTTTTGGTGTA+CGG | - | chr3_3:58018920-58018939 | Msa0460550:intron | 30.0% |
| TTGTAGTTCCATCTATAAGT+GGG | + | chr3_3:58019117-58019136 | None:intergenic | 30.0% | |
| TTTGTAGTTCCATCTATAAG+TGG | + | chr3_3:58019118-58019137 | None:intergenic | 30.0% | |
| TATTATTCTATTCTACCGCA+TGG | - | chr3_3:58019199-58019218 | Msa0460550:CDS | 30.0% | |
| TATACAAAGATGCTAGATCA+AGG | - | chr3_3:58019350-58019369 | Msa0460550:CDS | 30.0% | |
| ATACAAAGATGCTAGATCAA+GGG | - | chr3_3:58019351-58019370 | Msa0460550:CDS | 30.0% | |
| CTGATGGTTCAATAATGAAA+GGG | + | chr3_3:58019495-58019514 | None:intergenic | 30.0% | |
| ACTGATGGTTCAATAATGAA+AGG | + | chr3_3:58019496-58019515 | None:intergenic | 30.0% | |
| !!! | TATCATGTGAAGAGCATTTT+GGG | + | chr3_3:58019599-58019618 | None:intergenic | 30.0% |
| !!! | ATATCATGTGAAGAGCATTT+TGG | + | chr3_3:58019600-58019619 | None:intergenic | 30.0% |
| AAAATGCTCTTCACATGATA+TGG | - | chr3_3:58019599-58019618 | Msa0460550:CDS | 30.0% | |
| TCTTCACATGATATGGATTT+GGG | - | chr3_3:58019606-58019625 | Msa0460550:CDS | 30.0% | |
| TGTGACACTTAATATGACAT+AGG | + | chr3_3:58019762-58019781 | None:intergenic | 30.0% | |
| !! | ACTGAATTTCTTGTTGTTGA+AGG | + | chr3_3:58020034-58020053 | None:intergenic | 30.0% |
| !!! | TGACATCAATTTGGTTCTTT+TGG | - | chr3_3:58020070-58020089 | Msa0460550:intron | 30.0% |
| !!! | GACATCAATTTGGTTCTTTT+GGG | - | chr3_3:58020071-58020090 | Msa0460550:intron | 30.0% |
| TTGTACTCAAAACTACAACA+TGG | - | chr3_3:58020111-58020130 | Msa0460550:intron | 30.0% | |
| ATAAGCCTATTACAATGATG+TGG | + | chr3_3:58020363-58020382 | None:intergenic | 30.0% | |
| AGGCAAAAACAAACACAACA+GGG | + | chr3_3:58016995-58017014 | None:intergenic | 35.0% | |
| AAGGCAAAAACAAACACAAC+AGG | + | chr3_3:58016996-58017015 | None:intergenic | 35.0% | |
| TAACAGAATGCAGCTAAAGA+AGG | - | chr3_3:58017063-58017082 | Msa0460550:three_prime_UTR | 35.0% | |
| ! | TTTTGGTCAGAGTTCAAACT+CGG | - | chr3_3:58017405-58017424 | Msa0460550:three_prime_UTR | 35.0% |
| CAGTTAAGGTCATATCAATC+AGG | + | chr3_3:58017436-58017455 | None:intergenic | 35.0% | |
| TGTTAATGTCGAAAAAGGAG+TGG | - | chr3_3:58017787-58017806 | Msa0460550:CDS | 35.0% | |
| TGTCCTTGGAATCAAAGATA+AGG | + | chr3_3:58017858-58017877 | None:intergenic | 35.0% | |
| !! | AGCTTTAAGAAAGAATGCAG+TGG | - | chr3_3:58018005-58018024 | Msa0460550:CDS | 35.0% |
| ATTACCTATCTAGCTATCCA+TGG | - | chr3_3:58018201-58018220 | Msa0460550:CDS | 35.0% | |
| AATAACAGCAAATGCTGCTA+AGG | + | chr3_3:58018246-58018265 | None:intergenic | 35.0% | |
| !!! | GCAGCATTTGCTGTTATTTT+TGG | - | chr3_3:58018248-58018267 | Msa0460550:CDS | 35.0% |
| CAATGTCAGGTAGTTGTTTA+AGG | + | chr3_3:58018334-58018353 | None:intergenic | 35.0% | |
| CTTGAATTCAACAATGCACA+TGG | + | chr3_3:58018429-58018448 | None:intergenic | 35.0% | |
| CATGTGCATTGTTGAATTCA+AGG | - | chr3_3:58018427-58018446 | Msa0460550:CDS | 35.0% | |
| AATACTTCTGATGACCCAAT+AGG | + | chr3_3:58018525-58018544 | None:intergenic | 35.0% | |
| TCACAAATTGCAAGTCTCAT+AGG | - | chr3_3:58018557-58018576 | Msa0460550:CDS | 35.0% | |
| CACAAATTGCAAGTCTCATA+GGG | - | chr3_3:58018558-58018577 | Msa0460550:CDS | 35.0% | |
| AATTAAGGTAACGACTACGA+TGG | - | chr3_3:58018675-58018694 | Msa0460550:intron | 35.0% | |
| AAATAGCCCTGCAAAAAGAA+CGG | + | chr3_3:58018701-58018720 | None:intergenic | 35.0% | |
| !! | TACGAAACTTTTTGGTGTAC+GGG | - | chr3_3:58018921-58018940 | Msa0460550:intron | 35.0% |
| ! | AGATGAGAAGAAGCATATTG+AGG | - | chr3_3:58019000-58019019 | Msa0460550:intron | 35.0% |
| ! | TATTGAGGCATTTCTCTATC+TGG | - | chr3_3:58019015-58019034 | Msa0460550:intron | 35.0% |
| ATCGTCCTTTGCATAAATCA+AGG | + | chr3_3:58019089-58019108 | None:intergenic | 35.0% | |
| TGTAGTTCCATCTATAAGTG+GGG | + | chr3_3:58019116-58019135 | None:intergenic | 35.0% | |
| GACTTATACACATGACAAAC+AGG | - | chr3_3:58019237-58019256 | Msa0460550:intron | 35.0% | |
| !! | AGGTTAGTCTTGAAGTACTA+AGG | - | chr3_3:58019257-58019276 | Msa0460550:intron | 35.0% |
| !! | TTAGTCTTGAAGTACTAAGG+AGG | - | chr3_3:58019260-58019279 | Msa0460550:intron | 35.0% |
| TACAAAGATGCTAGATCAAG+GGG | - | chr3_3:58019352-58019371 | Msa0460550:CDS | 35.0% | |
| CTCTTCACATGATATGGATT+TGG | - | chr3_3:58019605-58019624 | Msa0460550:CDS | 35.0% | |
| CTTCACATGATATGGATTTG+GGG | - | chr3_3:58019607-58019626 | Msa0460550:CDS | 35.0% | |
| GATATGGATTTGGGGAAATT+TGG | - | chr3_3:58019615-58019634 | Msa0460550:CDS | 35.0% | |
| TCTTCTTTCTCACTTGTGAA+TGG | + | chr3_3:58019646-58019665 | None:intergenic | 35.0% | |
| TTCCAAACGTGACATCAATT+TGG | - | chr3_3:58020061-58020080 | Msa0460550:intron | 35.0% | |
| AACCAAATTGATGTCACGTT+TGG | + | chr3_3:58020066-58020085 | None:intergenic | 35.0% | |
| ACTCAAAACTACAACATGGT+AGG | - | chr3_3:58020115-58020134 | Msa0460550:intron | 35.0% | |
| AAGCATAGGATTGAACAAGA+TGG | - | chr3_3:58020294-58020313 | Msa0460550:CDS | 35.0% | |
| ATAGGATTGAACAAGATGGT+TGG | - | chr3_3:58020298-58020317 | Msa0460550:CDS | 35.0% | |
| TAGGATTGAACAAGATGGTT+GGG | - | chr3_3:58020299-58020318 | Msa0460550:CDS | 35.0% | |
| AGCAACCACATCATTGTAAT+AGG | - | chr3_3:58020355-58020374 | Msa0460550:intron | 35.0% | |
| TGTAATAGGCTTATTCTTCC+TGG | - | chr3_3:58020369-58020388 | Msa0460550:intron | 35.0% | |
| GTAATAGGCTTATTCTTCCT+GGG | - | chr3_3:58020370-58020389 | Msa0460550:intron | 35.0% | |
| AAAGTTGTTTGTGCTGAATG+TGG | - | chr3_3:58020414-58020433 | Msa0460550:intron | 35.0% | |
| ATTGTGTGAACACGTACAAT+TGG | + | chr3_3:58020523-58020542 | None:intergenic | 35.0% | |
| CACTAGCCATGTTACTGAAA+AGG | + | chr3_3:58017015-58017034 | None:intergenic | 40.0% | |
| TGTTAGAAGCAGCTGATAAC+TGG | + | chr3_3:58017048-58017067 | None:intergenic | 40.0% | |
| ! | GGACTGAACTTGTTTCATCA+TGG | + | chr3_3:58017122-58017141 | None:intergenic | 40.0% |
| !! | AATCATTGCTCGAAGTGTTG+AGG | - | chr3_3:58017213-58017232 | Msa0460550:three_prime_UTR | 40.0% |
| !! | ATCATTGCTCGAAGTGTTGA+GGG | - | chr3_3:58017214-58017233 | Msa0460550:three_prime_UTR | 40.0% |
| !! | CATTTGGTCTTAATCCTCCT+AGG | - | chr3_3:58017343-58017362 | Msa0460550:three_prime_UTR | 40.0% |
| GTCAAACTTTACTTAGCCCT+CGG | + | chr3_3:58017376-58017395 | None:intergenic | 40.0% | |
| CTCATGTTTAACCTGCCAAA+TGG | + | chr3_3:58017554-58017573 | None:intergenic | 40.0% | |
| ! | ATTGGAAACTACTGCTGCTT+TGG | - | chr3_3:58017582-58017601 | Msa0460550:CDS | 40.0% |
| AGATGCACATGCATCAACAA+TGG | - | chr3_3:58018169-58018188 | Msa0460550:intron | 40.0% | |
| ! | AACACAACTTTTGCATGCCA+TGG | + | chr3_3:58018221-58018240 | None:intergenic | 40.0% |
| AAACACACTTGCCAAATCTG+TGG | - | chr3_3:58018304-58018323 | Msa0460550:CDS | 40.0% | |
| TTTAAGGAGAGCCACAGATT+TGG | + | chr3_3:58018318-58018337 | None:intergenic | 40.0% | |
| ACAGAATTCTCTGCAATGTC+AGG | + | chr3_3:58018347-58018366 | None:intergenic | 40.0% | |
| ATGACCCAATAGGTAGCAAT+AGG | + | chr3_3:58018515-58018534 | None:intergenic | 40.0% | |
| !! | TTGGGTCATCAGAAGTATTG+TGG | - | chr3_3:58018526-58018545 | Msa0460550:CDS | 40.0% |
| CAATGAACTCACCTATAGCT+TGG | + | chr3_3:58018815-58018834 | None:intergenic | 40.0% | |
| AAGATGTACCAGGTTAGAGA+CGG | + | chr3_3:58018954-58018973 | None:intergenic | 40.0% | |
| GCGATTGTTAAAGATGTACC+AGG | + | chr3_3:58018964-58018983 | None:intergenic | 40.0% | |
| TTCTCATCTGTACCAGAGTA+AGG | + | chr3_3:58018989-58019008 | None:intergenic | 40.0% | |
| !! | TCTGGTACATCTTTTCGAGA+CGG | - | chr3_3:58019033-58019052 | Msa0460550:intron | 40.0% |
| GAGAGCCTTGATTTATGCAA+AGG | - | chr3_3:58019081-58019100 | Msa0460550:intron | 40.0% | |
| GATATTCCCCCACTTATAGA+TGG | - | chr3_3:58019106-58019125 | Msa0460550:intron | 40.0% | |
| GTAGTTCCATCTATAAGTGG+GGG | + | chr3_3:58019115-58019134 | None:intergenic | 40.0% | |
| AGACACACTATGAGATGGTA+TGG | - | chr3_3:58019377-58019396 | Msa0460550:CDS | 40.0% | |
| ATCTTCAATCAACAATGCCG+TGG | - | chr3_3:58019455-58019474 | Msa0460550:CDS | 40.0% | |
| TGGATCAAGAGCTACTAGAA+TGG | + | chr3_3:58019560-58019579 | None:intergenic | 40.0% | |
| GTGAGAAAGAAGAATCCTTG+TGG | - | chr3_3:58019653-58019672 | Msa0460550:CDS | 40.0% | |
| ! | TCCTTGTTGTAGATGACAGA+AGG | - | chr3_3:58019853-58019872 | Msa0460550:intron | 40.0% |
| TCCTTCTGTCATCTACAACA+AGG | + | chr3_3:58019857-58019876 | None:intergenic | 40.0% | |
| ! | TAGCAACTTCGAGTTAGAGA+TGG | - | chr3_3:58019957-58019976 | Msa0460550:intron | 40.0% |
| GAGTTAGAGATGGTCTATGT+AGG | - | chr3_3:58019967-58019986 | Msa0460550:intron | 40.0% | |
| TACAGAATATTGCCCAACCT+CGG | + | chr3_3:58020203-58020222 | None:intergenic | 40.0% | |
| TCAGCACAAACAACTTTCTG+AGG | + | chr3_3:58020411-58020430 | None:intergenic | 40.0% | |
| TACTAGCTGGCAAGCTATTA+AGG | - | chr3_3:58020847-58020866 | Msa0460550:CDS | 40.0% | |
| ! | ATCGATTTCACGACCATCAG+GGG | + | chr3_3:58017152-58017171 | None:intergenic | 45.0% |
| !! | CATCGATTTCACGACCATCA+GGG | + | chr3_3:58017153-58017172 | None:intergenic | 45.0% |
| !! | ACATCGATTTCACGACCATC+AGG | + | chr3_3:58017154-58017173 | None:intergenic | 45.0% |
| ! | GCATGCATGCATGTGTCATT+TGG | - | chr3_3:58017327-58017346 | Msa0460550:three_prime_UTR | 45.0% |
| ATTCGATATGCTTGATGCGC+TGG | - | chr3_3:58017609-58017628 | Msa0460550:CDS | 45.0% | |
| CAGCTATCATGCAAATGCTC+TGG | - | chr3_3:58018140-58018159 | Msa0460550:intron | 45.0% | |
| CTATCATGCAAATGCTCTGG+AGG | - | chr3_3:58018143-58018162 | Msa0460550:intron | 45.0% | |
| CATGCCATGGATAGCTAGAT+AGG | + | chr3_3:58018208-58018227 | None:intergenic | 45.0% | |
| !! | TTGTTGAGGGCATCAAACTG+TGG | + | chr3_3:58018380-58018399 | None:intergenic | 45.0% |
| !! | AGCCTTCACAAGCTTGTTGA+GGG | + | chr3_3:58018393-58018412 | None:intergenic | 45.0% |
| TGAGCACTTGCAACAGACAT+AGG | + | chr3_3:58018488-58018507 | None:intergenic | 45.0% | |
| TTTCATCAGCCTCAGAAGCA+TGG | - | chr3_3:58018718-58018737 | Msa0460550:intron | 45.0% | |
| ! | TTCATCAGCCTCAGAAGCAT+GGG | - | chr3_3:58018719-58018738 | Msa0460550:intron | 45.0% |
| AGTGACTTTGTGAGCAAGAC+TGG | + | chr3_3:58018751-58018770 | None:intergenic | 45.0% | |
| ! | CTTGGTAGCAAAGAGCAAGT+TGG | + | chr3_3:58018797-58018816 | None:intergenic | 45.0% |
| GCTCTTTGCTACCAAGCTAT+AGG | - | chr3_3:58018801-58018820 | Msa0460550:CDS | 45.0% | |
| TAACAATCGCGTCCTTACTC+TGG | - | chr3_3:58018974-58018993 | Msa0460550:intron | 45.0% | |
| GATGGTATGGATTCCAGTTG+TGG | - | chr3_3:58019390-58019409 | Msa0460550:CDS | 45.0% | |
| !! | CATGTTGCTTTGTCCACAAC+TGG | + | chr3_3:58019406-58019425 | None:intergenic | 45.0% |
| CAGTTGTGGACAAAGCAACA+TGG | - | chr3_3:58019404-58019423 | Msa0460550:CDS | 45.0% | |
| CTAGTAGCTCTTGATCCACA+AGG | - | chr3_3:58019562-58019581 | Msa0460550:CDS | 45.0% | |
| !!! | CATGTGAAGAGCATTTTGGG+AGG | + | chr3_3:58019596-58019615 | None:intergenic | 45.0% |
| CCAAATCTCTTGCTTCCACA+AGG | + | chr3_3:58019671-58019690 | None:intergenic | 45.0% | |
| CCTTGTGGAAGCAAGAGATT+TGG | - | chr3_3:58019668-58019687 | Msa0460550:CDS | 45.0% | |
| ! | AGCCTTGAGTTGCTTGTTGA+TGG | - | chr3_3:58019691-58019710 | Msa0460550:CDS | 45.0% |
| TGCCATCAACAAGCAACTCA+AGG | + | chr3_3:58019696-58019715 | None:intergenic | 45.0% | |
| !!! | TGGCATTGATCCTGCACTTT+TGG | - | chr3_3:58019711-58019730 | Msa0460550:CDS | 45.0% |
| ! | TTGATCCTGCACTTTTGGAC+TGG | - | chr3_3:58019716-58019735 | Msa0460550:CDS | 45.0% |
| ! | TGATCCTGCACTTTTGGACT+GGG | - | chr3_3:58019717-58019736 | Msa0460550:CDS | 45.0% |
| ATGACTGTGCTTAGCTTCGA+CGG | - | chr3_3:58020171-58020190 | Msa0460550:intron | 45.0% | |
| GGTTGGGCAATATTCTGTAG+AGG | - | chr3_3:58020204-58020223 | Msa0460550:intron | 45.0% | |
| CTGTAGAGGACCATCTGAAA+TGG | - | chr3_3:58020218-58020237 | Msa0460550:intron | 45.0% | |
| ! | AGGACCATCTGAAATGGCTA+GGG | - | chr3_3:58020224-58020243 | Msa0460550:intron | 45.0% |
| TTAGCCCTAGCCATTTCAGA+TGG | + | chr3_3:58020231-58020250 | None:intergenic | 45.0% | |
| ! | TCTGAAATGGCTAGGGCTAA+AGG | - | chr3_3:58020231-58020250 | Msa0460550:intron | 45.0% |
| ! | CTTATTCTTCCTGGGAGTAC+TGG | - | chr3_3:58020378-58020397 | Msa0460550:intron | 45.0% |
| TGCTGAATGTGGTCGTCAAA+TGG | - | chr3_3:58020425-58020444 | Msa0460550:intron | 45.0% | |
| ! | ACGTACAATTGGTGACTGCA+GGG | + | chr3_3:58020512-58020531 | None:intergenic | 45.0% |
| TCATGCAGTCAACACATCGA+TGG | + | chr3_3:58020616-58020635 | None:intergenic | 45.0% | |
| !! | TTAATTATGTTATATTTATA+GGG | - | chr3_3:58020743-58020762 | Msa0460550:CDS | 5.0% |
| !! | TCATGCAAATGCTCTGGAGG+TGG | - | chr3_3:58018146-58018165 | Msa0460550:intron | 50.0% |
| TGCCCTCAACAAGCTTGTGA+AGG | - | chr3_3:58018388-58018407 | Msa0460550:CDS | 50.0% | |
| !! | CAGCCTTCACAAGCTTGTTG+AGG | + | chr3_3:58018394-58018413 | None:intergenic | 50.0% |
| GCACTTGCAACAGACATAGG+AGG | + | chr3_3:58018485-58018504 | None:intergenic | 50.0% | |
| ! | ACGATGGCCGTTCTTTTTGC+AGG | - | chr3_3:58018691-58018710 | Msa0460550:intron | 50.0% |
| ! | CGATGGCCGTTCTTTTTGCA+GGG | - | chr3_3:58018692-58018711 | Msa0460550:intron | 50.0% |
| GGATAACTCCCATGCTTCTG+AGG | + | chr3_3:58018730-58018749 | None:intergenic | 50.0% | |
| GAAGATAGCCGTCTCTAACC+TGG | - | chr3_3:58018943-58018962 | Msa0460550:intron | 50.0% | |
| GGGTGAGACACACTATGAGA+TGG | - | chr3_3:58019372-58019391 | Msa0460550:CDS | 50.0% | |
| TGGGAGGACAATCTTCCTTG+TGG | + | chr3_3:58019580-58019599 | None:intergenic | 50.0% | |
| ! | CATACCCAGTCCAAAAGTGC+AGG | + | chr3_3:58019724-58019743 | None:intergenic | 50.0% |
| ATGGAGGCGAAGATCTAGAG+TGG | - | chr3_3:58019893-58019912 | Msa0460550:intron | 50.0% | |
| ! | GAGGACCATCTGAAATGGCT+AGG | - | chr3_3:58020223-58020242 | Msa0460550:intron | 50.0% |
| !! | ATTCTTCCTGGGAGTACTGG+TGG | - | chr3_3:58020381-58020400 | Msa0460550:intron | 50.0% |
| TGCAGGGAATCACGATTCGA+CGG | + | chr3_3:58020496-58020515 | None:intergenic | 50.0% | |
| ! | CACGTACAATTGGTGACTGC+AGG | + | chr3_3:58020513-58020532 | None:intergenic | 50.0% |
| TCACACAATCAGCGCATCAG+TGG | - | chr3_3:58020534-58020553 | Msa0460550:intron | 50.0% | |
| GAAGCAGCTGATAACTGGCG+AGG | + | chr3_3:58017043-58017062 | None:intergenic | 55.0% | |
| GGTATTCCACCAGTACTCCC+AGG | + | chr3_3:58020390-58020409 | None:intergenic | 55.0% | |
| GCAGGGAATCACGATTCGAC+GGG | + | chr3_3:58020495-58020514 | None:intergenic | 55.0% | |
| CAGTCCACTCATGCCCCTGA+TGG | - | chr3_3:58017136-58017155 | Msa0460550:three_prime_UTR | 60.0% | |
| ! | ACGACCATCAGGGGCATGAG+TGG | + | chr3_3:58017143-58017162 | None:intergenic | 60.0% |
| TCCTCCTAGGAGTTCAGCCG+AGG | - | chr3_3:58017356-58017375 | Msa0460550:three_prime_UTR | 60.0% | |
| CCTCCTAGGAGTTCAGCCGA+GGG | - | chr3_3:58017357-58017376 | Msa0460550:three_prime_UTR | 60.0% | |
| TAGCCCTCGGCTGAACTCCT+AGG | + | chr3_3:58017363-58017382 | None:intergenic | 60.0% | |
| GGGTCACGAACACTGTGCCA+CGG | + | chr3_3:58019475-58019494 | None:intergenic | 60.0% | |
| AGCTTCGACGGTAGTGACCG+AGG | - | chr3_3:58020183-58020202 | Msa0460550:intron | 60.0% | |
| TCGACGGTAGTGACCGAGGT+TGG | - | chr3_3:58020187-58020206 | Msa0460550:intron | 60.0% | |
| CGACGGTAGTGACCGAGGTT+GGG | - | chr3_3:58020188-58020207 | Msa0460550:intron | 60.0% | |
| CCCTCGGCTGAACTCCTAGG+AGG | + | chr3_3:58017360-58017379 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 58016976 | 58020956 | 58016976 | ID=Msa0460550;Name=Msa0460550 |
| chr3_3 | mRNA | 58016976 | 58020956 | 58016976 | ID=Msa0460550-mRNA-1;Parent=Msa0460550;Name=Msa0460550-mRNA-1;_AED=0.09;_eAED=0.09;_QI=49|1|1|1|0.85|0.75|8|441|706 |
| chr3_3 | exon | 58016976 | 58016998 | 58016976 | ID=Msa0460550-mRNA-1:exon:11963;Parent=Msa0460550-mRNA-1 |
| chr3_3 | exon | 58017032 | 58018067 | 58017032 | ID=Msa0460550-mRNA-1:exon:11962;Parent=Msa0460550-mRNA-1 |
| chr3_3 | exon | 58018194 | 58018673 | 58018194 | ID=Msa0460550-mRNA-1:exon:11961;Parent=Msa0460550-mRNA-1 |
| chr3_3 | exon | 58018788 | 58018930 | 58018788 | ID=Msa0460550-mRNA-1:exon:11960;Parent=Msa0460550-mRNA-1 |
| chr3_3 | exon | 58019110 | 58019219 | 58019110 | ID=Msa0460550-mRNA-1:exon:11959;Parent=Msa0460550-mRNA-1 |
| chr3_3 | exon | 58019341 | 58019789 | 58019341 | ID=Msa0460550-mRNA-1:exon:11958;Parent=Msa0460550-mRNA-1 |
| chr3_3 | exon | 58020272 | 58020370 | 58020272 | ID=Msa0460550-mRNA-1:exon:11957;Parent=Msa0460550-mRNA-1 |
| chr3_3 | exon | 58020686 | 58020956 | 58020686 | ID=Msa0460550-mRNA-1:exon:11956;Parent=Msa0460550-mRNA-1 |
| chr3_3 | five_prime_UTR | 58020908 | 58020956 | 58020908 | ID=Msa0460550-mRNA-1:five_prime_utr;Parent=Msa0460550-mRNA-1 |
| chr3_3 | CDS | 58020686 | 58020907 | 58020686 | ID=Msa0460550-mRNA-1:cds;Parent=Msa0460550-mRNA-1 |
| chr3_3 | CDS | 58020272 | 58020370 | 58020272 | ID=Msa0460550-mRNA-1:cds;Parent=Msa0460550-mRNA-1 |
| chr3_3 | CDS | 58019341 | 58019789 | 58019341 | ID=Msa0460550-mRNA-1:cds;Parent=Msa0460550-mRNA-1 |
| chr3_3 | CDS | 58019110 | 58019219 | 58019110 | ID=Msa0460550-mRNA-1:cds;Parent=Msa0460550-mRNA-1 |
| chr3_3 | CDS | 58018788 | 58018930 | 58018788 | ID=Msa0460550-mRNA-1:cds;Parent=Msa0460550-mRNA-1 |
| chr3_3 | CDS | 58018194 | 58018673 | 58018194 | ID=Msa0460550-mRNA-1:cds;Parent=Msa0460550-mRNA-1 |
| chr3_3 | CDS | 58017450 | 58018067 | 58017450 | ID=Msa0460550-mRNA-1:cds;Parent=Msa0460550-mRNA-1 |
| chr3_3 | three_prime_UTR | 58017032 | 58017449 | 58017032 | ID=Msa0460550-mRNA-1:three_prime_utr;Parent=Msa0460550-mRNA-1 |
| chr3_3 | three_prime_UTR | 58016976 | 58016998 | 58016976 | ID=Msa0460550-mRNA-1:three_prime_utr;Parent=Msa0460550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
