Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609300 | XP_003607678.2 | 96.847 | 222 | 5 | 2 | 1 | 220 | 1 | 222 | 3.12e-154 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609300 | sp|Q9SK27|ENL1_ARATH | 47.899 | 119 | 61 | 1 | 18 | 135 | 17 | 135 | 8.52e-34 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609300 | G7JF09 | 96.847 | 222 | 5 | 2 | 1 | 220 | 1 | 222 | 1.49e-154 | 436 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003740 | Msa0609300 | 0.819992 | 8.676275e-53 | -8.615850e-47 |
| Msa0015150 | Msa0609300 | 0.899194 | 2.522523e-77 | -8.615850e-47 |
| Msa0029960 | Msa0609300 | 0.823918 | 1.069169e-53 | -8.615850e-47 |
| Msa0029970 | Msa0609300 | 0.817560 | 3.095202e-52 | -8.615850e-47 |
| Msa0064120 | Msa0609300 | 0.868462 | 6.413230e-66 | -8.615850e-47 |
| Msa0071850 | Msa0609300 | 0.835724 | 1.420640e-56 | -8.615850e-47 |
| Msa0071860 | Msa0609300 | 0.826972 | 2.022721e-54 | -8.615850e-47 |
| Msa0072520 | Msa0609300 | 0.804205 | 2.415484e-49 | -8.615850e-47 |
| Msa0108880 | Msa0609300 | 0.875541 | 2.841104e-68 | -8.615850e-47 |
| Msa0609300 | Msa0622110 | 0.807414 | 5.114246e-50 | -8.615850e-47 |
| Msa0609300 | Msa0649840 | 0.814303 | 1.650076e-51 | -8.615850e-47 |
| Msa0609300 | Msa0655910 | 0.819234 | 1.292604e-52 | -8.615850e-47 |
| Msa0609300 | Msa0691910 | 0.994748 | 7.317440e-210 | -8.615850e-47 |
| Msa0609300 | Msa0701720 | 0.801307 | 9.575651e-49 | -8.615850e-47 |
| Msa0609300 | Msa0738700 | 0.829751 | 4.320174e-55 | -8.615850e-47 |
| Msa0609300 | Msa0740090 | 0.804419 | 2.180315e-49 | -8.615850e-47 |
| Msa0609300 | Msa0759010 | 0.841761 | 3.905431e-58 | -8.615850e-47 |
| Msa0609300 | Msa0782750 | 0.800673 | 1.290697e-48 | -8.615850e-47 |
| Msa0609300 | Msa0800140 | 0.846709 | 1.831536e-59 | -8.615850e-47 |
| Msa0609300 | Msa0800170 | 0.833574 | 4.932662e-56 | -8.615850e-47 |
| Msa0609300 | Msa0800200 | 0.849297 | 3.539835e-60 | -8.615850e-47 |
| Msa0609300 | Msa0849650 | 0.822395 | 2.423393e-53 | -8.615850e-47 |
| Msa0609300 | Msa0859290 | 0.804341 | 2.263216e-49 | -8.615850e-47 |
| Msa0609300 | Msa1014320 | 0.857709 | 1.356665e-62 | -8.615850e-47 |
| Msa0609300 | Msa1021780 | 0.805875 | 1.080719e-49 | -8.615850e-47 |
| Msa0609300 | Msa1029800 | 0.817526 | 3.150281e-52 | -8.615850e-47 |
| Msa0609300 | Msa1055310 | 0.832081 | 1.158772e-55 | -8.615850e-47 |
| Msa0609300 | Msa1187760 | 0.836856 | 7.323484e-57 | -8.615850e-47 |
| Msa0609300 | Msa1209320 | 0.813555 | 2.412139e-51 | -8.615850e-47 |
| Msa0609300 | Msa1209720 | 0.808930 | 2.431155e-50 | -8.615850e-47 |
| Msa0609300 | Msa1267050 | 0.820873 | 5.448828e-53 | -8.615850e-47 |
| Msa0609300 | Msa1267180 | 0.821458 | 3.995142e-53 | -8.615850e-47 |
| Msa0609300 | Msa1268380 | 0.850125 | 2.077900e-60 | -8.615850e-47 |
| Msa0609300 | Msa1268410 | 0.833926 | 4.027858e-56 | -8.615850e-47 |
| Msa0609300 | Msa1268440 | 0.841572 | 4.379710e-58 | -8.615850e-47 |
| Msa0609300 | Msa1356220 | 0.809061 | 2.279408e-50 | -8.615850e-47 |
| Msa0609300 | Msa1356350 | 0.822924 | 1.826062e-53 | -8.615850e-47 |
| Msa0609300 | Msa1367840 | 0.806583 | 7.665149e-50 | -8.615850e-47 |
| Msa0609300 | Msa1382580 | 0.808937 | 2.423334e-50 | -8.615850e-47 |
| Msa0609300 | Msa1401520 | 0.805281 | 1.439824e-49 | -8.615850e-47 |
| Msa0609300 | Msa1404480 | 0.803040 | 4.214315e-49 | -8.615850e-47 |
| Msa0609300 | Msa1415540 | 0.803618 | 3.199041e-49 | -8.615850e-47 |
| Msa0609300 | Msa1429860 | 0.820107 | 8.169475e-53 | -8.615850e-47 |
| Msa0609300 | Msa1435630 | 0.835066 | 2.082521e-56 | -8.615850e-47 |
| Msa0125210 | Msa0609300 | 0.822899 | 1.850640e-53 | -8.615850e-47 |
| Msa0155180 | Msa0609300 | 0.891991 | 2.394241e-74 | -8.615850e-47 |
| Msa0161930 | Msa0609300 | 0.810755 | 9.845734e-51 | -8.615850e-47 |
| Msa0182400 | Msa0609300 | 0.802854 | 4.603119e-49 | -8.615850e-47 |
| Msa0370810 | Msa0609300 | 0.807348 | 5.282289e-50 | -8.615850e-47 |
| Msa0382530 | Msa0609300 | 0.835283 | 1.836023e-56 | -8.615850e-47 |
| Msa0384870 | Msa0609300 | 0.808472 | 3.045967e-50 | -8.615850e-47 |
| Msa0418970 | Msa0609300 | 0.823227 | 1.551221e-53 | -8.615850e-47 |
| Msa0432320 | Msa0609300 | 0.843367 | 1.463588e-58 | -8.615850e-47 |
| Msa0451170 | Msa0609300 | 0.817371 | 3.414227e-52 | -8.615850e-47 |
| Msa0460550 | Msa0609300 | 0.824374 | 8.356939e-54 | -8.615850e-47 |
| Msa0482080 | Msa0609300 | 0.806171 | 9.364098e-50 | -8.615850e-47 |
| Msa0359010 | Msa0609300 | 0.812658 | 3.794918e-51 | -8.615850e-47 |
| Msa0525210 | Msa0609300 | 0.834323 | 3.203755e-56 | -8.615850e-47 |
| Msa0526010 | Msa0609300 | 0.806204 | 9.212770e-50 | -8.615850e-47 |
| Msa0562560 | Msa0609300 | 0.816770 | 4.660440e-52 | -8.615850e-47 |
| Msa0579780 | Msa0609300 | 0.812642 | 3.825892e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609300 | MtrunA17_Chr4g0041811 | 96.847 | 222 | 5 | 2 | 1 | 220 | 1 | 222 | 2.87e-158 | 436 |
| Msa0609300 | MtrunA17_Chr2g0319611 | 50.410 | 244 | 72 | 7 | 24 | 218 | 18 | 261 | 1.32e-65 | 203 |
| Msa0609300 | MtrunA17_Chr2g0324721 | 42.188 | 192 | 95 | 4 | 29 | 220 | 24 | 199 | 4.20e-41 | 139 |
| Msa0609300 | MtrunA17_Chr8g0360371 | 45.238 | 126 | 67 | 1 | 15 | 140 | 7 | 130 | 5.76e-37 | 131 |
| Msa0609300 | MtrunA17_Chr2g0317231 | 47.967 | 123 | 56 | 3 | 18 | 135 | 7 | 126 | 3.16e-34 | 129 |
| Msa0609300 | MtrunA17_Chr2g0324711 | 49.123 | 114 | 56 | 1 | 20 | 133 | 13 | 124 | 8.57e-34 | 124 |
| Msa0609300 | MtrunA17_Chr1g0150131 | 41.549 | 142 | 69 | 3 | 28 | 168 | 21 | 149 | 1.73e-33 | 119 |
| Msa0609300 | MtrunA17_Chr3g0136871 | 41.135 | 141 | 82 | 1 | 29 | 168 | 24 | 164 | 4.69e-33 | 117 |
| Msa0609300 | MtrunA17_Chr4g0040291 | 45.333 | 150 | 70 | 4 | 29 | 170 | 22 | 167 | 2.70e-31 | 113 |
| Msa0609300 | MtrunA17_Chr8g0385021 | 43.443 | 122 | 68 | 1 | 20 | 141 | 12 | 132 | 8.92e-28 | 106 |
| Msa0609300 | MtrunA17_Chr2g0331181 | 36.047 | 172 | 85 | 5 | 1 | 171 | 1 | 148 | 1.87e-27 | 103 |
| Msa0609300 | MtrunA17_Chr8g0385031 | 44.643 | 112 | 61 | 1 | 20 | 131 | 12 | 122 | 2.13e-26 | 103 |
| Msa0609300 | MtrunA17_Chr8g0385041 | 44.037 | 109 | 58 | 2 | 30 | 138 | 23 | 128 | 6.93e-25 | 99.8 |
| Msa0609300 | MtrunA17_Chr4g0062341 | 32.468 | 154 | 93 | 4 | 18 | 163 | 12 | 162 | 1.20e-22 | 90.5 |
| Msa0609300 | MtrunA17_Chr4g0062311 | 32.468 | 154 | 93 | 4 | 18 | 163 | 12 | 162 | 1.20e-22 | 90.5 |
| Msa0609300 | MtrunA17_Chr7g0256441 | 36.957 | 138 | 64 | 3 | 29 | 165 | 24 | 139 | 1.24e-22 | 89.7 |
| Msa0609300 | MtrunA17_Chr4g0039721 | 36.567 | 134 | 73 | 3 | 31 | 154 | 31 | 162 | 1.64e-22 | 90.1 |
| Msa0609300 | MtrunA17_Chr6g0458331 | 43.478 | 115 | 62 | 2 | 28 | 141 | 33 | 145 | 1.71e-22 | 89.7 |
| Msa0609300 | MtrunA17_Chr3g0127521 | 29.327 | 208 | 107 | 6 | 18 | 187 | 4 | 209 | 5.10e-20 | 85.9 |
| Msa0609300 | MtrunA17_Chr5g0394321 | 31.757 | 148 | 97 | 2 | 18 | 165 | 12 | 155 | 1.08e-18 | 80.1 |
| Msa0609300 | MtrunA17_Chr1g0205701 | 32.468 | 154 | 98 | 2 | 20 | 169 | 13 | 164 | 1.28e-18 | 80.1 |
| Msa0609300 | MtrunA17_Chr1g0188981 | 34.579 | 107 | 69 | 1 | 26 | 131 | 23 | 129 | 1.61e-18 | 80.1 |
| Msa0609300 | MtrunA17_Chr4g0073901 | 33.913 | 115 | 75 | 1 | 18 | 131 | 15 | 129 | 3.52e-18 | 79.0 |
| Msa0609300 | MtrunA17_Chr3g0132431 | 38.710 | 124 | 69 | 3 | 8 | 131 | 4 | 120 | 4.07e-17 | 76.3 |
| Msa0609300 | MtrunA17_Chr4g0073921 | 31.897 | 116 | 78 | 1 | 18 | 132 | 15 | 130 | 4.39e-17 | 77.8 |
| Msa0609300 | MtrunA17_Chr3g0132441 | 37.903 | 124 | 70 | 3 | 8 | 131 | 4 | 120 | 6.83e-17 | 75.5 |
| Msa0609300 | MtrunA17_Chr7g0253631 | 33.981 | 103 | 64 | 1 | 27 | 129 | 21 | 119 | 4.51e-16 | 74.3 |
| Msa0609300 | MtrunA17_Chr7g0253761 | 29.375 | 160 | 103 | 3 | 11 | 164 | 3 | 158 | 1.32e-15 | 72.0 |
| Msa0609300 | MtrunA17_Chr7g0253681 | 32.308 | 130 | 83 | 2 | 6 | 134 | 1 | 126 | 2.82e-15 | 70.5 |
| Msa0609300 | MtrunA17_Chr3g0132511 | 36.111 | 108 | 62 | 2 | 18 | 122 | 9 | 112 | 3.00e-15 | 72.0 |
| Msa0609300 | MtrunA17_Chr8g0335531 | 31.220 | 205 | 108 | 7 | 16 | 216 | 8 | 183 | 3.66e-15 | 70.9 |
| Msa0609300 | MtrunA17_Chr2g0323021 | 32.432 | 148 | 80 | 5 | 18 | 164 | 12 | 140 | 5.99e-15 | 71.2 |
| Msa0609300 | MtrunA17_Chr6g0483981 | 28.249 | 177 | 103 | 4 | 23 | 193 | 18 | 176 | 8.02e-15 | 72.8 |
| Msa0609300 | MtrunA17_Chr1g0196801 | 27.273 | 176 | 104 | 4 | 28 | 203 | 19 | 170 | 1.08e-14 | 69.3 |
| Msa0609300 | MtrunA17_Chr3g0132701 | 36.111 | 108 | 62 | 2 | 18 | 122 | 9 | 112 | 1.61e-14 | 69.7 |
| Msa0609300 | MtrunA17_Chr7g0253701 | 31.538 | 130 | 83 | 3 | 6 | 134 | 1 | 125 | 1.87e-14 | 68.6 |
| Msa0609300 | MtrunA17_Chr7g0253671 | 31.538 | 130 | 83 | 3 | 6 | 134 | 1 | 125 | 1.87e-14 | 68.6 |
| Msa0609300 | MtrunA17_Chr2g0289741 | 30.435 | 138 | 85 | 3 | 33 | 169 | 28 | 155 | 3.96e-14 | 67.8 |
| Msa0609300 | MtrunA17_Chr7g0253641 | 32.075 | 106 | 68 | 1 | 27 | 132 | 21 | 122 | 4.24e-14 | 68.9 |
| Msa0609300 | MtrunA17_Chr1g0177341 | 34.234 | 111 | 69 | 2 | 20 | 130 | 13 | 119 | 5.26e-14 | 67.0 |
| Msa0609300 | MtrunA17_Chr1g0177331 | 34.234 | 111 | 69 | 2 | 20 | 130 | 13 | 119 | 5.26e-14 | 67.0 |
| Msa0609300 | MtrunA17_Chr4g0064041 | 30.645 | 124 | 86 | 0 | 9 | 132 | 6 | 129 | 7.41e-14 | 69.7 |
| Msa0609300 | MtrunA17_Chr4g0064041 | 29.670 | 182 | 121 | 1 | 32 | 213 | 191 | 365 | 1.16e-13 | 68.9 |
| Msa0609300 | MtrunA17_Chr3g0132411 | 31.624 | 117 | 72 | 3 | 18 | 131 | 48 | 159 | 4.38e-13 | 65.1 |
| Msa0609300 | MtrunA17_Chr6g0453921 | 28.846 | 156 | 88 | 4 | 11 | 164 | 17 | 151 | 6.86e-13 | 64.7 |
| Msa0609300 | MtrunA17_Chr1g0211101 | 31.138 | 167 | 99 | 5 | 2 | 167 | 10 | 161 | 1.65e-12 | 63.5 |
| Msa0609300 | MtrunA17_Chr6g0459441 | 34.694 | 98 | 60 | 1 | 34 | 131 | 28 | 121 | 4.84e-12 | 62.4 |
| Msa0609300 | MtrunA17_Chr2g0306461 | 33.028 | 109 | 71 | 2 | 23 | 131 | 19 | 125 | 5.04e-12 | 62.8 |
| Msa0609300 | MtrunA17_Chr8g0379081 | 28.873 | 142 | 81 | 3 | 79 | 220 | 2 | 123 | 6.26e-12 | 60.8 |
| Msa0609300 | MtrunA17_Chr4g0033131 | 28.182 | 110 | 75 | 2 | 23 | 129 | 19 | 127 | 7.97e-12 | 61.6 |
| Msa0609300 | MtrunA17_Chr4g0033531 | 28.182 | 110 | 75 | 2 | 23 | 129 | 19 | 127 | 7.97e-12 | 61.6 |
| Msa0609300 | MtrunA17_Chr8g0335571 | 28.571 | 203 | 128 | 5 | 16 | 216 | 8 | 195 | 8.13e-12 | 62.0 |
| Msa0609300 | MtrunA17_Chr7g0253731 | 31.034 | 116 | 75 | 3 | 20 | 134 | 13 | 124 | 1.07e-11 | 60.8 |
| Msa0609300 | MtrunA17_Chr8g0387804 | 30.088 | 113 | 77 | 2 | 19 | 131 | 17 | 127 | 1.16e-11 | 60.1 |
| Msa0609300 | MtrunA17_Chr6g0481491 | 30.841 | 107 | 69 | 2 | 34 | 140 | 30 | 131 | 2.29e-11 | 60.8 |
| Msa0609300 | MtrunA17_Chr6g0453801 | 27.273 | 165 | 89 | 5 | 19 | 180 | 21 | 157 | 7.14e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609300 | AT3G20570.1 | 47.368 | 190 | 90 | 2 | 11 | 200 | 9 | 188 | 6.98e-53 | 169 |
| Msa0609300 | AT4G28365.1 | 43.137 | 153 | 72 | 3 | 27 | 179 | 24 | 161 | 8.32e-35 | 123 |
| Msa0609300 | AT2G25060.1 | 47.899 | 119 | 61 | 1 | 18 | 135 | 17 | 135 | 8.66e-35 | 122 |
| Msa0609300 | AT4G30590.1 | 46.774 | 124 | 65 | 1 | 32 | 154 | 28 | 151 | 5.66e-34 | 120 |
| Msa0609300 | AT4G31840.1 | 37.654 | 162 | 81 | 3 | 17 | 176 | 11 | 154 | 7.31e-33 | 117 |
| Msa0609300 | AT5G25090.1 | 41.860 | 129 | 74 | 1 | 8 | 135 | 2 | 130 | 2.25e-32 | 116 |
| Msa0609300 | AT2G23990.1 | 39.011 | 182 | 97 | 2 | 35 | 215 | 31 | 199 | 5.20e-29 | 108 |
| Msa0609300 | AT5G57920.1 | 40.741 | 108 | 63 | 1 | 27 | 133 | 18 | 125 | 1.11e-28 | 106 |
| Msa0609300 | AT5G53870.2 | 38.690 | 168 | 96 | 4 | 29 | 191 | 27 | 192 | 2.09e-28 | 110 |
| Msa0609300 | AT5G57920.3 | 40.741 | 108 | 63 | 1 | 27 | 133 | 50 | 157 | 3.14e-28 | 106 |
| Msa0609300 | AT5G53870.1 | 38.690 | 168 | 96 | 4 | 29 | 191 | 27 | 192 | 3.54e-28 | 109 |
| Msa0609300 | AT5G57920.2 | 41.346 | 104 | 60 | 1 | 31 | 133 | 21 | 124 | 4.23e-28 | 105 |
| Msa0609300 | AT4G32490.1 | 36.875 | 160 | 94 | 3 | 24 | 179 | 23 | 179 | 5.21e-28 | 105 |
| Msa0609300 | AT4G27520.1 | 40.310 | 129 | 70 | 2 | 12 | 135 | 6 | 132 | 4.78e-26 | 103 |
| Msa0609300 | AT2G23990.2 | 35.323 | 201 | 97 | 3 | 35 | 215 | 31 | 218 | 1.47e-24 | 97.1 |
| Msa0609300 | AT1G48940.1 | 38.843 | 121 | 70 | 2 | 15 | 133 | 9 | 127 | 4.88e-22 | 89.4 |
| Msa0609300 | AT3G18590.1 | 44.231 | 104 | 54 | 2 | 31 | 132 | 26 | 127 | 5.19e-21 | 87.0 |
| Msa0609300 | AT5G14345.1 | 35.252 | 139 | 74 | 5 | 17 | 153 | 4 | 128 | 6.99e-19 | 80.1 |
| Msa0609300 | AT1G79800.1 | 35.000 | 120 | 71 | 3 | 18 | 132 | 16 | 133 | 4.06e-18 | 79.3 |
| Msa0609300 | AT1G64640.1 | 29.730 | 148 | 92 | 2 | 24 | 171 | 25 | 160 | 9.45e-18 | 78.2 |
| Msa0609300 | AT5G26330.1 | 32.787 | 122 | 78 | 2 | 11 | 132 | 5 | 122 | 5.32e-17 | 76.3 |
| Msa0609300 | AT4G01380.1 | 37.143 | 105 | 63 | 3 | 29 | 131 | 69 | 172 | 4.14e-15 | 71.6 |
| Msa0609300 | AT3G17675.1 | 30.894 | 123 | 81 | 1 | 7 | 129 | 7 | 125 | 4.64e-15 | 69.7 |
| Msa0609300 | AT2G32300.2 | 29.747 | 158 | 101 | 4 | 5 | 159 | 30 | 180 | 1.54e-14 | 71.2 |
| Msa0609300 | AT5G07475.1 | 31.193 | 109 | 70 | 2 | 21 | 129 | 19 | 122 | 1.92e-14 | 69.3 |
| Msa0609300 | AT2G32300.1 | 29.299 | 157 | 101 | 4 | 6 | 159 | 1 | 150 | 2.38e-14 | 70.5 |
| Msa0609300 | AT1G72230.1 | 33.094 | 139 | 81 | 4 | 40 | 178 | 31 | 157 | 4.66e-14 | 68.2 |
| Msa0609300 | AT3G27200.1 | 34.545 | 110 | 66 | 3 | 21 | 129 | 15 | 119 | 7.66e-13 | 64.7 |
| Msa0609300 | AT2G31050.1 | 34.343 | 99 | 62 | 1 | 34 | 132 | 31 | 126 | 2.10e-12 | 63.9 |
| Msa0609300 | AT5G20230.1 | 27.820 | 133 | 81 | 3 | 31 | 158 | 24 | 146 | 2.39e-12 | 63.9 |
| Msa0609300 | AT2G27035.1 | 31.618 | 136 | 85 | 5 | 20 | 154 | 17 | 145 | 9.64e-12 | 61.6 |
| Msa0609300 | AT2G26720.1 | 32.323 | 99 | 64 | 1 | 34 | 132 | 31 | 126 | 2.20e-11 | 61.2 |
| Msa0609300 | AT1G45063.2 | 34.343 | 99 | 62 | 3 | 34 | 131 | 151 | 247 | 3.57e-11 | 61.6 |
| Msa0609300 | AT1G45063.1 | 34.343 | 99 | 62 | 3 | 34 | 131 | 151 | 247 | 4.48e-11 | 62.0 |
Find 63 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTCTGTTGGAACTTTCA+TGG | 0.283920 | 4_2:-56663466 | Msa0609300:CDS |
| GGTGGTGTTTGGTTTGTGTC+TGG | 0.308705 | 4_2:+56663558 | None:intergenic |
| TTGGAACACTCCAACCCTTT+TGG | 0.324439 | 4_2:+56664074 | None:intergenic |
| GATTGACCCTCTTGGTTAGA+AGG | 0.326602 | 4_2:+56663588 | None:intergenic |
| TTCTGTATGAACTAAGTCTT+TGG | 0.337648 | 4_2:-56663349 | Msa0609300:three_prime_UTR |
| GTGGAGTAGCATTGCTTGTT+TGG | 0.340017 | 4_2:+56663643 | None:intergenic |
| GTCTTTAAACTCAACCAATC+AGG | 0.360809 | 4_2:-56663771 | Msa0609300:CDS |
| TAAGTCTTTGGTTCAAAGTT+GGG | 0.375372 | 4_2:-56663337 | Msa0609300:three_prime_UTR |
| TAGCCGTAGGAGGTGGTGTT+TGG | 0.395961 | 4_2:+56663547 | None:intergenic |
| GCTGCTTATGATTTCATAGT+TGG | 0.397465 | 4_2:-56664100 | Msa0609300:CDS |
| TCAAACTTTGTCAGCCTAGC+TGG | 0.397725 | 4_2:-56663486 | Msa0609300:CDS |
| CTAAGTCTTTGGTTCAAAGT+TGG | 0.401588 | 4_2:-56663338 | Msa0609300:three_prime_UTR |
| GGAAAGAATTGAGGCATCAT+TGG | 0.405096 | 4_2:+56664265 | None:intergenic |
| CCATTGATTAAAAGGATTGT+TGG | 0.406941 | 4_2:+56664045 | None:intergenic |
| GTTTGGTTTGTGTCTGGAGG+TGG | 0.410354 | 4_2:+56663564 | None:intergenic |
| GTCAGCCTAGCTGGCTCTGT+TGG | 0.417659 | 4_2:-56663477 | Msa0609300:CDS |
| TCATACAGAACTCAAAATAT+AGG | 0.425370 | 4_2:+56663362 | None:intergenic |
| CTCGAGCACTCATAGATACT+TGG | 0.425737 | 4_2:+56663425 | None:intergenic |
| GCACAGAGTCTTTGCCAGAT+TGG | 0.426430 | 4_2:+56663868 | None:intergenic |
| TTGTGATCCTCATATTTCAA+TGG | 0.433574 | 4_2:-56664200 | Msa0609300:exon |
| TTTATTAGACCTTAAAATGA+AGG | 0.439171 | 4_2:+56664174 | None:intergenic |
| TTCATAGTTGGTGGCCAAAA+GGG | 0.444814 | 4_2:-56664088 | Msa0609300:CDS |
| CCCTCTTGGTTAGAAGGTGC+TGG | 0.449755 | 4_2:+56663594 | None:intergenic |
| AGTAGCATTGCTTGTTTGGT+TGG | 0.452665 | 4_2:+56663647 | None:intergenic |
| TTTCATAGTTGGTGGCCAAA+AGG | 0.455909 | 4_2:-56664089 | Msa0609300:CDS |
| AAAGGATTGTTGGAATCACT+TGG | 0.491885 | 4_2:+56664055 | None:intergenic |
| GGTGTTTGGTTTGTGTCTGG+AGG | 0.499463 | 4_2:+56663561 | None:intergenic |
| CATGATCATCCTCCTCGTAA+TGG | 0.504200 | 4_2:-56663516 | Msa0609300:CDS |
| AATTAGTCCATGCCTTGAGC+TGG | 0.511550 | 4_2:-56664153 | Msa0609300:CDS |
| GCTTATGATTTCATAGTTGG+TGG | 0.511634 | 4_2:-56664097 | Msa0609300:CDS |
| GCAGTGTTCAACTACCAATC+TGG | 0.514865 | 4_2:-56663882 | Msa0609300:intron |
| GGGAGTCTCCAACTTGAAAA+CGG | 0.517540 | 4_2:+56664011 | None:intergenic |
| GATTATGCAAGTTGCAACAC+TGG | 0.519894 | 4_2:-56663828 | Msa0609300:CDS |
| GGAGGTGATGATTGTGGTGA+TGG | 0.527680 | 4_2:+56663621 | None:intergenic |
| AAACCAAACACCACCTCCTA+CGG | 0.530029 | 4_2:-56663550 | Msa0609300:CDS |
| TGAAGAAATGAGGCCCTGAT+TGG | 0.537089 | 4_2:+56663757 | None:intergenic |
| TGTAAATAGCTTCCTTTCCA+CGG | 0.537607 | 4_2:-56664313 | Msa0609300:five_prime_UTR |
| TTTCCACTGATGAAGAAATG+AGG | 0.541876 | 4_2:+56663747 | None:intergenic |
| TTTCAAGTTGGAGACTCCCT+AGG | 0.546330 | 4_2:-56664007 | Msa0609300:intron |
| GGTGATGATTGTGGTGATGG+TGG | 0.547221 | 4_2:+56663624 | None:intergenic |
| CCTGTTGCAAAATTCTCTGA+TGG | 0.555562 | 4_2:-56663801 | Msa0609300:CDS |
| GGGCCTCATTTCTTCATCAG+TGG | 0.556626 | 4_2:-56663750 | Msa0609300:CDS |
| AAGTTCCAACAGAGCCAGCT+AGG | 0.556887 | 4_2:+56663472 | None:intergenic |
| TCTTTAAACTCAACCAATCA+GGG | 0.557095 | 4_2:-56663770 | Msa0609300:CDS |
| TAGTTGGTGGCCAAAAGGGT+TGG | 0.561994 | 4_2:-56664084 | Msa0609300:CDS |
| TGGTTAGAAGGTGCTGGTGA+AGG | 0.562676 | 4_2:+56663600 | None:intergenic |
| TAGAGTGATGGAAAGAATTG+AGG | 0.568099 | 4_2:+56664256 | None:intergenic |
| GAGGTGGAGATTGACCCTCT+TGG | 0.574489 | 4_2:+56663580 | None:intergenic |
| GACAAAACCAGCTCAAGGCA+TGG | 0.579660 | 4_2:+56664146 | None:intergenic |
| AAGGTAGCCATTGAAATATG+AGG | 0.588319 | 4_2:+56664193 | None:intergenic |
| TCACTAGTAGCCGTAGGAGG+TGG | 0.599144 | 4_2:+56663540 | None:intergenic |
| GGTGAAGGAGGTGATGATTG+TGG | 0.599724 | 4_2:+56663615 | None:intergenic |
| TTAGAAGGTGCTGGTGAAGG+AGG | 0.600249 | 4_2:+56663603 | None:intergenic |
| AAATGTTAAAGCTAGAGTGA+TGG | 0.601239 | 4_2:+56664244 | None:intergenic |
| AAATTGTGCAAACCGTGGAA+AGG | 0.606922 | 4_2:+56664301 | None:intergenic |
| CATGAGACAAAACCAGCTCA+AGG | 0.630389 | 4_2:+56664141 | None:intergenic |
| TATTGAAATTGTGCAAACCG+TGG | 0.637396 | 4_2:+56664296 | None:intergenic |
| TGATCACTAGTAGCCGTAGG+AGG | 0.647674 | 4_2:+56663537 | None:intergenic |
| ACCAGCACCTTCTAACCAAG+AGG | 0.647755 | 4_2:-56663595 | Msa0609300:CDS |
| TTTGAAGCAGCACCATTACG+AGG | 0.663713 | 4_2:+56663504 | None:intergenic |
| TCATGATCACTAGTAGCCGT+AGG | 0.676192 | 4_2:+56663534 | None:intergenic |
| CCAGCACCTTCTAACCAAGA+GGG | 0.685433 | 4_2:-56663594 | Msa0609300:CDS |
| GAAGCAGCACCATTACGAGG+AGG | 0.705603 | 4_2:+56663507 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATCACATTAAATTTT+TGG | - | chr4_2:56663551-56663570 | Msa0609300:CDS | 10.0% |
| !!! | TTTATATCACATTAAATTTT+TGG | - | chr4_2:56663551-56663570 | Msa0609300:CDS | 10.0% |
| !! | TTTATTAGACCTTAAAATGA+AGG | + | chr4_2:56663339-56663358 | None:intergenic | 20.0% |
| !!! | GAATTAAACCCATTTTTTTA+CGG | - | chr4_2:56664309-56664328 | Msa0609300:five_prime_UTR | 20.0% |
| !! | TTTATTAGACCTTAAAATGA+AGG | + | chr4_2:56663339-56663358 | None:intergenic | 20.0% |
| !!! | GAATTAAACCCATTTTTTTA+CGG | - | chr4_2:56664309-56664328 | Msa0609300:five_prime_UTR | 20.0% |
| ! | AAATCAATTGAGAAAAATGC+TGG | + | chr4_2:56663292-56663311 | None:intergenic | 25.0% |
| !! | CAACAATCCTTTTAATCAAT+GGG | - | chr4_2:56663466-56663485 | Msa0609300:CDS | 25.0% |
| ! | ATTAAAGAAGAACTTACCTA+GGG | + | chr4_2:56663522-56663541 | None:intergenic | 25.0% |
| ! | TCATACAGAACTCAAAATAT+AGG | + | chr4_2:56664151-56664170 | None:intergenic | 25.0% |
| ! | GTGAAGATTGAAAAATAAGT+TGG | - | chr4_2:56664216-56664235 | Msa0609300:five_prime_UTR | 25.0% |
| ! | AAATCAATTGAGAAAAATGC+TGG | + | chr4_2:56663292-56663311 | None:intergenic | 25.0% |
| !! | CAACAATCCTTTTAATCAAT+GGG | - | chr4_2:56663466-56663485 | Msa0609300:CDS | 25.0% |
| ! | ATTAAAGAAGAACTTACCTA+GGG | + | chr4_2:56663522-56663541 | None:intergenic | 25.0% |
| ! | TCATACAGAACTCAAAATAT+AGG | + | chr4_2:56664151-56664170 | None:intergenic | 25.0% |
| ! | GTGAAGATTGAAAAATAAGT+TGG | - | chr4_2:56664216-56664235 | Msa0609300:five_prime_UTR | 25.0% |
| AAATGTTAAAGCTAGAGTGA+TGG | + | chr4_2:56663269-56663288 | None:intergenic | 30.0% | |
| TTGTGATCCTCATATTTCAA+TGG | - | chr4_2:56663310-56663329 | Msa0609300:three_prime_UTR | 30.0% | |
| ! | CCATTGATTAAAAGGATTGT+TGG | + | chr4_2:56663468-56663487 | None:intergenic | 30.0% |
| ! | CCAACAATCCTTTTAATCAA+TGG | - | chr4_2:56663465-56663484 | Msa0609300:CDS | 30.0% |
| !! | TTTTCTGCCCATTGATTAAA+AGG | + | chr4_2:56663476-56663495 | None:intergenic | 30.0% |
| GATTAAAGAAGAACTTACCT+AGG | + | chr4_2:56663523-56663542 | None:intergenic | 30.0% | |
| TCTTTAAACTCAACCAATCA+GGG | - | chr4_2:56663740-56663759 | Msa0609300:CDS | 30.0% | |
| TTCTGTATGAACTAAGTCTT+TGG | - | chr4_2:56664161-56664180 | Msa0609300:CDS | 30.0% | |
| ! | TAAGTCTTTGGTTCAAAGTT+GGG | - | chr4_2:56664173-56664192 | Msa0609300:CDS | 30.0% |
| AAATGTTAAAGCTAGAGTGA+TGG | + | chr4_2:56663269-56663288 | None:intergenic | 30.0% | |
| TTGTGATCCTCATATTTCAA+TGG | - | chr4_2:56663310-56663329 | Msa0609300:three_prime_UTR | 30.0% | |
| ! | CCATTGATTAAAAGGATTGT+TGG | + | chr4_2:56663468-56663487 | None:intergenic | 30.0% |
| ! | CCAACAATCCTTTTAATCAA+TGG | - | chr4_2:56663465-56663484 | Msa0609300:CDS | 30.0% |
| !! | TTTTCTGCCCATTGATTAAA+AGG | + | chr4_2:56663476-56663495 | None:intergenic | 30.0% |
| GATTAAAGAAGAACTTACCT+AGG | + | chr4_2:56663523-56663542 | None:intergenic | 30.0% | |
| TCTTTAAACTCAACCAATCA+GGG | - | chr4_2:56663740-56663759 | Msa0609300:CDS | 30.0% | |
| TTCTGTATGAACTAAGTCTT+TGG | - | chr4_2:56664161-56664180 | Msa0609300:CDS | 30.0% | |
| ! | TAAGTCTTTGGTTCAAAGTT+GGG | - | chr4_2:56664173-56664192 | Msa0609300:CDS | 30.0% |
| TGTAAATAGCTTCCTTTCCA+CGG | - | chr4_2:56663197-56663216 | Msa0609300:three_prime_UTR | 35.0% | |
| TATTGAAATTGTGCAAACCG+TGG | + | chr4_2:56663217-56663236 | None:intergenic | 35.0% | |
| ! | TAGAGTGATGGAAAGAATTG+AGG | + | chr4_2:56663257-56663276 | None:intergenic | 35.0% |
| AAGGTAGCCATTGAAATATG+AGG | + | chr4_2:56663320-56663339 | None:intergenic | 35.0% | |
| ! | CAATGGCTACCTTCATTTTA+AGG | - | chr4_2:56663327-56663346 | Msa0609300:three_prime_UTR | 35.0% |
| GCTGCTTATGATTTCATAGT+TGG | - | chr4_2:56663410-56663429 | Msa0609300:three_prime_UTR | 35.0% | |
| GCTTATGATTTCATAGTTGG+TGG | - | chr4_2:56663413-56663432 | Msa0609300:three_prime_UTR | 35.0% | |
| AAAGGATTGTTGGAATCACT+TGG | + | chr4_2:56663458-56663477 | None:intergenic | 35.0% | |
| GTCTTTAAACTCAACCAATC+AGG | - | chr4_2:56663739-56663758 | Msa0609300:CDS | 35.0% | |
| TTTCCACTGATGAAGAAATG+AGG | + | chr4_2:56663766-56663785 | None:intergenic | 35.0% | |
| CAACTGTCTCAAAAATGAGA+AGG | - | chr4_2:56663792-56663811 | Msa0609300:CDS | 35.0% | |
| ! | CTAAGTCTTTGGTTCAAAGT+TGG | - | chr4_2:56664172-56664191 | Msa0609300:CDS | 35.0% |
| TGTAAATAGCTTCCTTTCCA+CGG | - | chr4_2:56663197-56663216 | Msa0609300:three_prime_UTR | 35.0% | |
| TATTGAAATTGTGCAAACCG+TGG | + | chr4_2:56663217-56663236 | None:intergenic | 35.0% | |
| ! | TAGAGTGATGGAAAGAATTG+AGG | + | chr4_2:56663257-56663276 | None:intergenic | 35.0% |
| AAGGTAGCCATTGAAATATG+AGG | + | chr4_2:56663320-56663339 | None:intergenic | 35.0% | |
| ! | CAATGGCTACCTTCATTTTA+AGG | - | chr4_2:56663327-56663346 | Msa0609300:three_prime_UTR | 35.0% |
| GCTGCTTATGATTTCATAGT+TGG | - | chr4_2:56663410-56663429 | Msa0609300:three_prime_UTR | 35.0% | |
| GCTTATGATTTCATAGTTGG+TGG | - | chr4_2:56663413-56663432 | Msa0609300:three_prime_UTR | 35.0% | |
| AAAGGATTGTTGGAATCACT+TGG | + | chr4_2:56663458-56663477 | None:intergenic | 35.0% | |
| GTCTTTAAACTCAACCAATC+AGG | - | chr4_2:56663739-56663758 | Msa0609300:CDS | 35.0% | |
| TTTCCACTGATGAAGAAATG+AGG | + | chr4_2:56663766-56663785 | None:intergenic | 35.0% | |
| CAACTGTCTCAAAAATGAGA+AGG | - | chr4_2:56663792-56663811 | Msa0609300:CDS | 35.0% | |
| ! | CTAAGTCTTTGGTTCAAAGT+TGG | - | chr4_2:56664172-56664191 | Msa0609300:CDS | 35.0% |
| AAATTGTGCAAACCGTGGAA+AGG | + | chr4_2:56663212-56663231 | None:intergenic | 40.0% | |
| ! | GGAAAGAATTGAGGCATCAT+TGG | + | chr4_2:56663248-56663267 | None:intergenic | 40.0% |
| !! | TTTCATAGTTGGTGGCCAAA+AGG | - | chr4_2:56663421-56663440 | Msa0609300:exon | 40.0% |
| !! | TTCATAGTTGGTGGCCAAAA+GGG | - | chr4_2:56663422-56663441 | Msa0609300:exon | 40.0% |
| !!! | GAAAAGAGCCGTTTTCAAGT+TGG | - | chr4_2:56663491-56663510 | Msa0609300:CDS | 40.0% |
| GATTATGCAAGTTGCAACAC+TGG | - | chr4_2:56663682-56663701 | Msa0609300:CDS | 40.0% | |
| ! | CCATCAGAGAATTTTGCAAC+AGG | + | chr4_2:56663712-56663731 | None:intergenic | 40.0% |
| CCTGTTGCAAAATTCTCTGA+TGG | - | chr4_2:56663709-56663728 | Msa0609300:CDS | 40.0% | |
| AGTAGCATTGCTTGTTTGGT+TGG | + | chr4_2:56663866-56663885 | None:intergenic | 40.0% | |
| AAATTGTGCAAACCGTGGAA+AGG | + | chr4_2:56663212-56663231 | None:intergenic | 40.0% | |
| ! | GGAAAGAATTGAGGCATCAT+TGG | + | chr4_2:56663248-56663267 | None:intergenic | 40.0% |
| !! | TTTCATAGTTGGTGGCCAAA+AGG | - | chr4_2:56663421-56663440 | Msa0609300:exon | 40.0% |
| !! | TTCATAGTTGGTGGCCAAAA+GGG | - | chr4_2:56663422-56663441 | Msa0609300:exon | 40.0% |
| !!! | GAAAAGAGCCGTTTTCAAGT+TGG | - | chr4_2:56663491-56663510 | Msa0609300:CDS | 40.0% |
| GATTATGCAAGTTGCAACAC+TGG | - | chr4_2:56663682-56663701 | Msa0609300:CDS | 40.0% | |
| ! | CCATCAGAGAATTTTGCAAC+AGG | + | chr4_2:56663712-56663731 | None:intergenic | 40.0% |
| CCTGTTGCAAAATTCTCTGA+TGG | - | chr4_2:56663709-56663728 | Msa0609300:CDS | 40.0% | |
| AGTAGCATTGCTTGTTTGGT+TGG | + | chr4_2:56663866-56663885 | None:intergenic | 40.0% | |
| AATTAGTCCATGCCTTGAGC+TGG | - | chr4_2:56663357-56663376 | Msa0609300:three_prime_UTR | 45.0% | |
| CATGAGACAAAACCAGCTCA+AGG | + | chr4_2:56663372-56663391 | None:intergenic | 45.0% | |
| ! | TTGGAACACTCCAACCCTTT+TGG | + | chr4_2:56663439-56663458 | None:intergenic | 45.0% |
| GGGAGTCTCCAACTTGAAAA+CGG | + | chr4_2:56663502-56663521 | None:intergenic | 45.0% | |
| !! | TTTCAAGTTGGAGACTCCCT+AGG | - | chr4_2:56663503-56663522 | Msa0609300:CDS | 45.0% |
| GCAGTGTTCAACTACCAATC+TGG | - | chr4_2:56663628-56663647 | Msa0609300:CDS | 45.0% | |
| TGAAGAAATGAGGCCCTGAT+TGG | + | chr4_2:56663756-56663775 | None:intergenic | 45.0% | |
| GTGGAGTAGCATTGCTTGTT+TGG | + | chr4_2:56663870-56663889 | None:intergenic | 45.0% | |
| GATTGACCCTCTTGGTTAGA+AGG | + | chr4_2:56663925-56663944 | None:intergenic | 45.0% | |
| AAACCAAACACCACCTCCTA+CGG | - | chr4_2:56663960-56663979 | Msa0609300:intron | 45.0% | |
| TCATGATCACTAGTAGCCGT+AGG | + | chr4_2:56663979-56663998 | None:intergenic | 45.0% | |
| CATGATCATCCTCCTCGTAA+TGG | - | chr4_2:56663994-56664013 | Msa0609300:intron | 45.0% | |
| ! | TTTGAAGCAGCACCATTACG+AGG | + | chr4_2:56664009-56664028 | None:intergenic | 45.0% |
| TCAAACTTTGTCAGCCTAGC+TGG | - | chr4_2:56664024-56664043 | Msa0609300:CDS | 45.0% | |
| ! | TGGCTCTGTTGGAACTTTCA+TGG | - | chr4_2:56664044-56664063 | Msa0609300:CDS | 45.0% |
| CTCGAGCACTCATAGATACT+TGG | + | chr4_2:56664088-56664107 | None:intergenic | 45.0% | |
| AATTAGTCCATGCCTTGAGC+TGG | - | chr4_2:56663357-56663376 | Msa0609300:three_prime_UTR | 45.0% | |
| CATGAGACAAAACCAGCTCA+AGG | + | chr4_2:56663372-56663391 | None:intergenic | 45.0% | |
| ! | TTGGAACACTCCAACCCTTT+TGG | + | chr4_2:56663439-56663458 | None:intergenic | 45.0% |
| GGGAGTCTCCAACTTGAAAA+CGG | + | chr4_2:56663502-56663521 | None:intergenic | 45.0% | |
| !! | TTTCAAGTTGGAGACTCCCT+AGG | - | chr4_2:56663503-56663522 | Msa0609300:CDS | 45.0% |
| GCAGTGTTCAACTACCAATC+TGG | - | chr4_2:56663628-56663647 | Msa0609300:CDS | 45.0% | |
| TGAAGAAATGAGGCCCTGAT+TGG | + | chr4_2:56663756-56663775 | None:intergenic | 45.0% | |
| GTGGAGTAGCATTGCTTGTT+TGG | + | chr4_2:56663870-56663889 | None:intergenic | 45.0% | |
| GATTGACCCTCTTGGTTAGA+AGG | + | chr4_2:56663925-56663944 | None:intergenic | 45.0% | |
| AAACCAAACACCACCTCCTA+CGG | - | chr4_2:56663960-56663979 | Msa0609300:intron | 45.0% | |
| TCATGATCACTAGTAGCCGT+AGG | + | chr4_2:56663979-56663998 | None:intergenic | 45.0% | |
| CATGATCATCCTCCTCGTAA+TGG | - | chr4_2:56663994-56664013 | Msa0609300:intron | 45.0% | |
| ! | TTTGAAGCAGCACCATTACG+AGG | + | chr4_2:56664009-56664028 | None:intergenic | 45.0% |
| TCAAACTTTGTCAGCCTAGC+TGG | - | chr4_2:56664024-56664043 | Msa0609300:CDS | 45.0% | |
| ! | TGGCTCTGTTGGAACTTTCA+TGG | - | chr4_2:56664044-56664063 | Msa0609300:CDS | 45.0% |
| CTCGAGCACTCATAGATACT+TGG | + | chr4_2:56664088-56664107 | None:intergenic | 45.0% | |
| GACAAAACCAGCTCAAGGCA+TGG | + | chr4_2:56663367-56663386 | None:intergenic | 50.0% | |
| !! | TAGTTGGTGGCCAAAAGGGT+TGG | - | chr4_2:56663426-56663445 | Msa0609300:exon | 50.0% |
| GCACAGAGTCTTTGCCAGAT+TGG | + | chr4_2:56663645-56663664 | None:intergenic | 50.0% | |
| GGGCCTCATTTCTTCATCAG+TGG | - | chr4_2:56663760-56663779 | Msa0609300:CDS | 50.0% | |
| !! | GGTGATGATTGTGGTGATGG+TGG | + | chr4_2:56663889-56663908 | None:intergenic | 50.0% |
| GGAGGTGATGATTGTGGTGA+TGG | + | chr4_2:56663892-56663911 | None:intergenic | 50.0% | |
| GGTGAAGGAGGTGATGATTG+TGG | + | chr4_2:56663898-56663917 | None:intergenic | 50.0% | |
| !! | TTAGAAGGTGCTGGTGAAGG+AGG | + | chr4_2:56663910-56663929 | None:intergenic | 50.0% |
| !! | TGGTTAGAAGGTGCTGGTGA+AGG | + | chr4_2:56663913-56663932 | None:intergenic | 50.0% |
| ACCAGCACCTTCTAACCAAG+AGG | - | chr4_2:56663915-56663934 | Msa0609300:intron | 50.0% | |
| CCAGCACCTTCTAACCAAGA+GGG | - | chr4_2:56663916-56663935 | Msa0609300:intron | 50.0% | |
| !! | GTTTGGTTTGTGTCTGGAGG+TGG | + | chr4_2:56663949-56663968 | None:intergenic | 50.0% |
| !! | GGTGTTTGGTTTGTGTCTGG+AGG | + | chr4_2:56663952-56663971 | None:intergenic | 50.0% |
| !! | GGTGGTGTTTGGTTTGTGTC+TGG | + | chr4_2:56663955-56663974 | None:intergenic | 50.0% |
| TGATCACTAGTAGCCGTAGG+AGG | + | chr4_2:56663976-56663995 | None:intergenic | 50.0% | |
| AAGTTCCAACAGAGCCAGCT+AGG | + | chr4_2:56664041-56664060 | None:intergenic | 50.0% | |
| GACAAAACCAGCTCAAGGCA+TGG | + | chr4_2:56663367-56663386 | None:intergenic | 50.0% | |
| !! | TAGTTGGTGGCCAAAAGGGT+TGG | - | chr4_2:56663426-56663445 | Msa0609300:exon | 50.0% |
| GCACAGAGTCTTTGCCAGAT+TGG | + | chr4_2:56663645-56663664 | None:intergenic | 50.0% | |
| GGGCCTCATTTCTTCATCAG+TGG | - | chr4_2:56663760-56663779 | Msa0609300:CDS | 50.0% | |
| !! | GGTGATGATTGTGGTGATGG+TGG | + | chr4_2:56663889-56663908 | None:intergenic | 50.0% |
| GGAGGTGATGATTGTGGTGA+TGG | + | chr4_2:56663892-56663911 | None:intergenic | 50.0% | |
| GGTGAAGGAGGTGATGATTG+TGG | + | chr4_2:56663898-56663917 | None:intergenic | 50.0% | |
| !! | TTAGAAGGTGCTGGTGAAGG+AGG | + | chr4_2:56663910-56663929 | None:intergenic | 50.0% |
| !! | TGGTTAGAAGGTGCTGGTGA+AGG | + | chr4_2:56663913-56663932 | None:intergenic | 50.0% |
| ACCAGCACCTTCTAACCAAG+AGG | - | chr4_2:56663915-56663934 | Msa0609300:intron | 50.0% | |
| CCAGCACCTTCTAACCAAGA+GGG | - | chr4_2:56663916-56663935 | Msa0609300:intron | 50.0% | |
| !! | GTTTGGTTTGTGTCTGGAGG+TGG | + | chr4_2:56663949-56663968 | None:intergenic | 50.0% |
| !! | GGTGTTTGGTTTGTGTCTGG+AGG | + | chr4_2:56663952-56663971 | None:intergenic | 50.0% |
| !! | GGTGGTGTTTGGTTTGTGTC+TGG | + | chr4_2:56663955-56663974 | None:intergenic | 50.0% |
| TGATCACTAGTAGCCGTAGG+AGG | + | chr4_2:56663976-56663995 | None:intergenic | 50.0% | |
| AAGTTCCAACAGAGCCAGCT+AGG | + | chr4_2:56664041-56664060 | None:intergenic | 50.0% | |
| ! | CCCTCTTGGTTAGAAGGTGC+TGG | + | chr4_2:56663919-56663938 | None:intergenic | 55.0% |
| GAGGTGGAGATTGACCCTCT+TGG | + | chr4_2:56663933-56663952 | None:intergenic | 55.0% | |
| TAGCCGTAGGAGGTGGTGTT+TGG | + | chr4_2:56663966-56663985 | None:intergenic | 55.0% | |
| TCACTAGTAGCCGTAGGAGG+TGG | + | chr4_2:56663973-56663992 | None:intergenic | 55.0% | |
| GAAGCAGCACCATTACGAGG+AGG | + | chr4_2:56664006-56664025 | None:intergenic | 55.0% | |
| ! | CCCTCTTGGTTAGAAGGTGC+TGG | + | chr4_2:56663919-56663938 | None:intergenic | 55.0% |
| GAGGTGGAGATTGACCCTCT+TGG | + | chr4_2:56663933-56663952 | None:intergenic | 55.0% | |
| TAGCCGTAGGAGGTGGTGTT+TGG | + | chr4_2:56663966-56663985 | None:intergenic | 55.0% | |
| TCACTAGTAGCCGTAGGAGG+TGG | + | chr4_2:56663973-56663992 | None:intergenic | 55.0% | |
| GAAGCAGCACCATTACGAGG+AGG | + | chr4_2:56664006-56664025 | None:intergenic | 55.0% | |
| !! | GTCAGCCTAGCTGGCTCTGT+TGG | - | chr4_2:56664033-56664052 | Msa0609300:CDS | 60.0% |
| !! | GTCAGCCTAGCTGGCTCTGT+TGG | - | chr4_2:56664033-56664052 | Msa0609300:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 56663195 | 56664337 | 56663195 | ID=Msa0609300;Name=Msa0609300 |
| chr4_2 | mRNA | 56663195 | 56664337 | 56663195 | ID=Msa0609300-mRNA-1;Parent=Msa0609300;Name=Msa0609300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=134|1|1|1|1|1|2|239|220 |
| chr4_2 | exon | 56663195 | 56663900 | 56663195 | ID=Msa0609300-mRNA-1:exon:14627;Parent=Msa0609300-mRNA-1 |
| chr4_2 | exon | 56664008 | 56664337 | 56664008 | ID=Msa0609300-mRNA-1:exon:14626;Parent=Msa0609300-mRNA-1 |
| chr4_2 | five_prime_UTR | 56664204 | 56664337 | 56664204 | ID=Msa0609300-mRNA-1:five_prime_utr;Parent=Msa0609300-mRNA-1 |
| chr4_2 | CDS | 56664008 | 56664203 | 56664008 | ID=Msa0609300-mRNA-1:cds;Parent=Msa0609300-mRNA-1 |
| chr4_2 | CDS | 56663434 | 56663900 | 56663434 | ID=Msa0609300-mRNA-1:cds;Parent=Msa0609300-mRNA-1 |
| chr4_2 | three_prime_UTR | 56663195 | 56663433 | 56663195 | ID=Msa0609300-mRNA-1:three_prime_utr;Parent=Msa0609300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
