Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046950 | XP_003626454.1 | 97.187 | 391 | 9 | 2 | 1 | 391 | 1 | 389 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046950 | sp|Q99090|CPRF2_PETCR | 51.589 | 409 | 155 | 15 | 1 | 386 | 1 | 389 | 1.02e-108 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0046950 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046950 | Msa0052780 | 0.805690 | 1.181781e-49 | -8.615850e-47 |
| Msa0046950 | Msa0053640 | 0.839588 | 1.448124e-57 | -8.615850e-47 |
| Msa0046950 | Msa0097570 | 0.810990 | 8.755171e-51 | -8.615850e-47 |
| Msa0046950 | Msa0099260 | 0.844682 | 6.499821e-59 | -8.615850e-47 |
| Msa0046950 | Msa0145430 | 0.800966 | 1.124659e-48 | -8.615850e-47 |
| Msa0046950 | Msa0148040 | 0.837046 | 6.549947e-57 | -8.615850e-47 |
| Msa0046950 | Msa0224210 | 0.802608 | 5.174094e-49 | -8.615850e-47 |
| Msa0046950 | Msa0233920 | 0.899083 | 2.814556e-77 | -8.615850e-47 |
| Msa0046950 | Msa0312640 | 0.856447 | 3.198228e-62 | -8.615850e-47 |
| Msa0046950 | Msa0340370 | 0.816396 | 5.651080e-52 | -8.615850e-47 |
| Msa0046950 | Msa0370910 | 0.808073 | 3.705049e-50 | -8.615850e-47 |
| Msa0046950 | Msa0390790 | 0.806384 | 8.443342e-50 | -8.615850e-47 |
| Msa0046950 | Msa0403750 | 0.871090 | 8.906809e-67 | -8.615850e-47 |
| Msa0046950 | Msa0403790 | 0.845749 | 3.345085e-59 | -8.615850e-47 |
| Msa0046950 | Msa0403860 | 0.870367 | 1.539087e-66 | -8.615850e-47 |
| Msa0046950 | Msa0460760 | 0.865609 | 5.216070e-65 | -8.615850e-47 |
| Msa0046950 | Msa0464850 | 0.805702 | 1.175147e-49 | -8.615850e-47 |
| Msa0046950 | Msa0481310 | 0.800506 | 1.395809e-48 | -8.615850e-47 |
| Msa0046950 | Msa0484400 | 0.824288 | 8.756626e-54 | -8.615850e-47 |
| Msa0046950 | Msa0510520 | 0.840150 | 1.034206e-57 | -8.615850e-47 |
| Msa0046950 | Msa0573950 | 0.824014 | 1.015126e-53 | -8.615850e-47 |
| Msa0046950 | Msa0576560 | 0.820753 | 5.805226e-53 | -8.615850e-47 |
| Msa0046950 | Msa0577640 | 0.841910 | 3.567832e-58 | -8.615850e-47 |
| Msa0046950 | Msa0577730 | 0.856533 | 3.017523e-62 | -8.615850e-47 |
| Msa0046950 | Msa0689300 | 0.835823 | 1.340998e-56 | -8.615850e-47 |
| Msa0046950 | Msa0838640 | 0.817879 | 2.622226e-52 | -8.615850e-47 |
| Msa0046950 | Msa0838650 | 0.822694 | 2.065082e-53 | -8.615850e-47 |
| Msa0046950 | Msa0982340 | 0.812548 | 4.011319e-51 | -8.615850e-47 |
| Msa0046950 | Msa0982550 | 0.823572 | 1.288554e-53 | -8.615850e-47 |
| Msa0046950 | Msa1038350 | 0.868499 | 6.239325e-66 | -8.615850e-47 |
| Msa0046950 | Msa1087890 | 0.901418 | 2.733969e-78 | -8.615850e-47 |
| Msa0046950 | Msa1127260 | 0.809327 | 1.998900e-50 | -8.615850e-47 |
| Msa0046950 | Msa1129420 | 0.994230 | 1.388823e-205 | -8.615850e-47 |
| Msa0046950 | Msa1173150 | 0.809536 | 1.802246e-50 | -8.615850e-47 |
| Msa0046950 | Msa1312770 | 0.800513 | 1.391369e-48 | -8.615850e-47 |
| Msa0046950 | Msa1352920 | 0.813070 | 3.082450e-51 | -8.615850e-47 |
| Msa0046950 | Msa1385970 | 0.908205 | 2.203642e-81 | -8.615850e-47 |
| Msa0046950 | Msa1417110 | 0.908523 | 1.558233e-81 | -8.615850e-47 |
| Msa0046950 | Msa1441330 | 0.827144 | 1.839886e-54 | -8.615850e-47 |
| Msa0046950 | Msa1443220 | 0.867653 | 1.168109e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046950 | MtrunA17_Chr7g0274141 | 97.187 | 391 | 9 | 2 | 1 | 391 | 1 | 389 | 0.0 | 768 |
| Msa0046950 | MtrunA17_Chr1g0190761 | 56.296 | 405 | 154 | 10 | 1 | 387 | 1 | 400 | 4.59e-130 | 379 |
| Msa0046950 | MtrunA17_Chr3g0139301 | 52.899 | 138 | 58 | 3 | 151 | 281 | 76 | 213 | 4.82e-31 | 120 |
| Msa0046950 | MtrunA17_Chr1g0147491 | 58.333 | 120 | 45 | 2 | 170 | 286 | 142 | 259 | 3.09e-25 | 105 |
| Msa0046950 | MtrunA17_Chr3g0139571 | 58.904 | 73 | 30 | 0 | 196 | 268 | 2 | 74 | 2.74e-17 | 76.3 |
| Msa0046950 | MtrunA17_Chr4g0035414 | 40.000 | 115 | 59 | 1 | 173 | 287 | 17 | 121 | 2.93e-16 | 75.5 |
| Msa0046950 | MtrunA17_Chr3g0144941 | 39.785 | 93 | 56 | 0 | 193 | 285 | 27 | 119 | 1.02e-14 | 71.2 |
| Msa0046950 | MtrunA17_Chr8g0341311 | 40.816 | 98 | 53 | 1 | 171 | 268 | 54 | 146 | 5.89e-14 | 69.7 |
| Msa0046950 | MtrunA17_Chr7g0225661 | 40.816 | 98 | 53 | 1 | 171 | 268 | 64 | 156 | 9.64e-14 | 69.3 |
| Msa0046950 | MtrunA17_Chr8g0378901 | 35.238 | 105 | 68 | 0 | 181 | 285 | 20 | 124 | 9.68e-14 | 68.6 |
| Msa0046950 | MtrunA17_Chr6g0456061 | 47.297 | 74 | 39 | 0 | 196 | 269 | 90 | 163 | 7.13e-13 | 67.0 |
| Msa0046950 | MtrunA17_Chr1g0155551 | 29.747 | 158 | 88 | 3 | 165 | 309 | 9 | 156 | 2.20e-12 | 64.7 |
| Msa0046950 | MtrunA17_Chr7g0220571 | 42.857 | 91 | 44 | 1 | 178 | 268 | 77 | 159 | 3.43e-11 | 62.0 |
| Msa0046950 | MtrunA17_Chr4g0054291 | 32.895 | 152 | 87 | 5 | 121 | 268 | 7 | 147 | 7.28e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046950 | AT5G28770.2 | 45.244 | 389 | 128 | 13 | 1 | 384 | 1 | 309 | 6.52e-72 | 228 |
| Msa0046950 | AT5G28770.1 | 44.935 | 385 | 128 | 13 | 1 | 384 | 1 | 302 | 7.37e-68 | 217 |
| Msa0046950 | AT5G28770.3 | 47.810 | 274 | 90 | 9 | 1 | 269 | 1 | 226 | 1.80e-53 | 178 |
| Msa0046950 | AT4G02640.3 | 37.615 | 327 | 147 | 8 | 1 | 285 | 1 | 312 | 2.40e-39 | 145 |
| Msa0046950 | AT4G02640.2 | 37.615 | 327 | 147 | 8 | 1 | 285 | 1 | 312 | 3.29e-39 | 145 |
| Msa0046950 | AT4G02640.4 | 37.072 | 321 | 151 | 7 | 1 | 285 | 1 | 306 | 6.86e-39 | 144 |
| Msa0046950 | AT4G02640.1 | 37.072 | 321 | 151 | 7 | 1 | 285 | 1 | 306 | 8.23e-39 | 144 |
| Msa0046950 | AT3G54620.1 | 34.293 | 382 | 162 | 14 | 1 | 325 | 1 | 350 | 1.85e-37 | 140 |
| Msa0046950 | AT5G24800.1 | 55.814 | 129 | 47 | 4 | 158 | 277 | 76 | 203 | 7.88e-35 | 130 |
| Msa0046950 | AT5G28770.4 | 43.404 | 235 | 80 | 9 | 1 | 230 | 1 | 187 | 5.52e-31 | 118 |
| Msa0046950 | AT3G54620.3 | 32.723 | 382 | 151 | 16 | 1 | 325 | 1 | 333 | 2.72e-25 | 106 |
| Msa0046950 | AT3G30530.1 | 39.796 | 98 | 56 | 1 | 171 | 268 | 59 | 153 | 6.18e-13 | 67.0 |
| Msa0046950 | AT2G04038.1 | 42.857 | 98 | 51 | 1 | 171 | 268 | 54 | 146 | 9.49e-13 | 66.2 |
| Msa0046950 | AT1G75390.1 | 37.963 | 108 | 62 | 1 | 194 | 301 | 39 | 141 | 1.01e-12 | 66.6 |
| Msa0046950 | AT2G18160.1 | 39.759 | 83 | 50 | 0 | 193 | 275 | 28 | 110 | 2.06e-12 | 65.5 |
| Msa0046950 | AT1G13600.1 | 38.776 | 98 | 54 | 1 | 171 | 268 | 67 | 158 | 2.24e-11 | 63.2 |
Find 91 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCTTCCCGATCTATTAT+TGG | 0.211521 | 1_1:-79369752 | None:intergenic |
| CTTTCAGGATGCTCTCTAAT+AGG | 0.224164 | 1_1:+79368861 | Msa0046950:intron |
| AAGAAAGAAAGACAAGAAAA+TGG | 0.243127 | 1_1:+79366987 | Msa0046950:exon |
| TATGTAGAATGCGGCCCTTC+TGG | 0.245369 | 1_1:+79368305 | Msa0046950:intron |
| CTGAAATAACGGAGCAATAT+TGG | 0.250912 | 1_1:+79367028 | Msa0046950:CDS |
| TATTGATTCTGAGGATTATC+AGG | 0.285549 | 1_1:+79367248 | Msa0046950:CDS |
| ATTGTAACAGCAGGTTTCTT+TGG | 0.288769 | 1_1:-79368389 | None:intergenic |
| GAGACAGTTAAAAGATTTAC+TGG | 0.291659 | 1_1:+79369553 | Msa0046950:CDS |
| ATATGTTCCAAACATGCTTC+TGG | 0.308555 | 1_1:-79370096 | None:intergenic |
| AATTCTCCCAGAAGCATGTT+TGG | 0.344998 | 1_1:+79370089 | Msa0046950:three_prime_UTR |
| AATTCCTGGAGATAGGAATT+AGG | 0.346220 | 1_1:+79370040 | Msa0046950:three_prime_UTR |
| CTCATGGCAATAGGGATCTT+TGG | 0.348357 | 1_1:+79368074 | Msa0046950:intron |
| CCATCTTATCCTTCTGAACT+TGG | 0.355060 | 1_1:+79368129 | Msa0046950:CDS |
| CCTGCCACGGGTGGCTAGCT+TGG | 0.382757 | 1_1:+79369843 | Msa0046950:CDS |
| AAGATATCAAAGTTGCTGTT+GGG | 0.385646 | 1_1:+79368354 | Msa0046950:CDS |
| GACATTAGATTATTAGATAA+GGG | 0.396715 | 1_1:-79369709 | None:intergenic |
| TTTCAGGATGCTCTCTAATA+GGG | 0.402739 | 1_1:+79368862 | Msa0046950:intron |
| TCCTTCTGAACTTGGACCTC+TGG | 0.404582 | 1_1:+79368137 | Msa0046950:CDS |
| ATTCTATCACTTGTCTTCTT+CGG | 0.406886 | 1_1:-79369896 | None:intergenic |
| GCTCAAAAGTCAACAAGAAT+AGG | 0.417159 | 1_1:-79369993 | None:intergenic |
| TATTAGGTCTCTGAATTAAG+AGG | 0.422615 | 1_1:+79369052 | Msa0046950:intron |
| CTTAGATTAATTAGATATGA+TGG | 0.427179 | 1_1:+79370201 | Msa0046950:three_prime_UTR |
| CCAAGCTAGCCACCCGTGGC+AGG | 0.428000 | 1_1:-79369843 | None:intergenic |
| GTTGAAGTTGAAGATGAAGA+AGG | 0.442163 | 1_1:-79367177 | None:intergenic |
| GCAGCAGGTGGGAACAAGAT+AGG | 0.452428 | 1_1:+79369808 | Msa0046950:CDS |
| ATGGGAATGTCATTATTTGA+TGG | 0.455802 | 1_1:+79369616 | Msa0046950:CDS |
| GAGATACAACAAAGATGAAT+CGG | 0.458250 | 1_1:+79367076 | Msa0046950:CDS |
| GATGGCTGTGATCCATTGTC+AGG | 0.464580 | 1_1:-79368111 | None:intergenic |
| TATGTTCCAAACATGCTTCT+GGG | 0.465520 | 1_1:-79370095 | None:intergenic |
| GGGATCTTTGGTCAAATCTC+AGG | 0.465850 | 1_1:+79368086 | Msa0046950:intron |
| GGACATTAGATTATTAGATA+AGG | 0.466925 | 1_1:-79369710 | None:intergenic |
| CTGGGAAAATTCCTGGAGAT+AGG | 0.474134 | 1_1:+79370033 | Msa0046950:three_prime_UTR |
| AAAGATATCAAAGTTGCTGT+TGG | 0.482051 | 1_1:+79368353 | Msa0046950:CDS |
| GAGGGAGAGATTAATATGAA+TGG | 0.483459 | 1_1:+79368452 | Msa0046950:CDS |
| GGACCTCTGGCTACTTTGAA+AGG | 0.489971 | 1_1:+79368150 | Msa0046950:CDS |
| AATGTCTGAGGTATCATCAA+TGG | 0.491343 | 1_1:+79369597 | Msa0046950:CDS |
| GGCGCAAGCAAGATCAAGCT+TGG | 0.492090 | 1_1:-79367283 | None:intergenic |
| TCTGTGCTATTTGAAAGTTT+AGG | 0.498965 | 1_1:+79369970 | Msa0046950:three_prime_UTR |
| GTTATCAATTGCTGAAATAA+CGG | 0.504761 | 1_1:+79367017 | Msa0046950:CDS |
| GCAGGTTTCTTTGGCATGCA+AGG | 0.507308 | 1_1:-79368380 | None:intergenic |
| ATGTCTGAGGTATCATCAAT+GGG | 0.509553 | 1_1:+79369598 | Msa0046950:CDS |
| TTATTTGGATCTTCTTGCAC+AGG | 0.510884 | 1_1:-79369673 | None:intergenic |
| CTATCCTAATTCCTATCTCC+AGG | 0.511568 | 1_1:-79370044 | None:intergenic |
| AGAGGAGCCAATAATAGATC+GGG | 0.512572 | 1_1:+79369745 | Msa0046950:CDS |
| CAGAAGAACACCGCAGCAGG+TGG | 0.514294 | 1_1:+79369796 | Msa0046950:CDS |
| GCGCCGCCGTCGCTAAGTCG+AGG | 0.516197 | 1_1:+79367301 | Msa0046950:CDS |
| CGCCGCCGTCGCTAAGTCGA+GGG | 0.517985 | 1_1:+79367302 | Msa0046950:CDS |
| GAGAGGAGCCAATAATAGAT+CGG | 0.524926 | 1_1:+79369744 | Msa0046950:CDS |
| GAATCGGAGTGATTCAGAAT+GGG | 0.529997 | 1_1:+79367092 | Msa0046950:CDS |
| GGCTCCTCTCATATCATGAC+TGG | 0.535600 | 1_1:-79369731 | None:intergenic |
| GTGCAGAAGAACACCGCAGC+AGG | 0.536590 | 1_1:+79369793 | Msa0046950:CDS |
| CCAAGTTCAGAAGGATAAGA+TGG | 0.536978 | 1_1:-79368129 | None:intergenic |
| CAATAATAGTATTGATTCTG+AGG | 0.537078 | 1_1:+79367239 | Msa0046950:CDS |
| TAGGAATTAGGATAGCCAAT+AGG | 0.537249 | 1_1:+79370052 | Msa0046950:three_prime_UTR |
| AGATATCAAAGTTGCTGTTG+GGG | 0.538293 | 1_1:+79368355 | Msa0046950:CDS |
| ACTTCGAAAGCGTGCAAGGA+AGG | 0.541198 | 1_1:+79367054 | Msa0046950:CDS |
| ACAATCAAGTCAACAACAAG+TGG | 0.544242 | 1_1:+79368407 | Msa0046950:CDS |
| TGAATCGGAGTGATTCAGAA+TGG | 0.545437 | 1_1:+79367091 | Msa0046950:CDS |
| GCCAGAGGTCCAAGTTCAGA+AGG | 0.550767 | 1_1:-79368138 | None:intergenic |
| CATCTTCAGAGTCGAATTCG+TGG | 0.551475 | 1_1:+79369868 | Msa0046950:CDS |
| AACAAATTCCCTGCCACGGG+TGG | 0.555330 | 1_1:+79369834 | Msa0046950:CDS |
| AAGATTTACTGGATCGAACC+CGG | 0.558877 | 1_1:+79369564 | Msa0046950:CDS |
| CAAGCTAGCCACCCGTGGCA+GGG | 0.562427 | 1_1:-79369842 | None:intergenic |
| GTTGACTTCGAAAGCGTGCA+AGG | 0.565558 | 1_1:+79367050 | Msa0046950:CDS |
| TCTAAGTTACACATCAGTCA+TGG | 0.569320 | 1_1:-79370184 | None:intergenic |
| TCTTCGTCTTGAGCGTCTAG+CGG | 0.573008 | 1_1:-79368888 | None:intergenic |
| CAGACATTGCATTAAACACC+GGG | 0.574406 | 1_1:-79369582 | None:intergenic |
| TAGATGGATCGTTTCCAGAA+GGG | 0.575636 | 1_1:-79368319 | None:intergenic |
| ATCAGACGATGAGGAAGCTG+AGG | 0.576946 | 1_1:+79368433 | Msa0046950:CDS |
| TTTAACTGAGCTTGAAACAC+AGG | 0.587276 | 1_1:+79368922 | Msa0046950:CDS |
| GTTGACTTGATTGTAACAGC+AGG | 0.587759 | 1_1:-79368398 | None:intergenic |
| ACGAACAAATTCCCTGCCAC+GGG | 0.590000 | 1_1:+79369831 | Msa0046950:CDS |
| TTAGATGGATCGTTTCCAGA+AGG | 0.592645 | 1_1:-79368320 | None:intergenic |
| TCAGACATTGCATTAAACAC+CGG | 0.598502 | 1_1:-79369583 | None:intergenic |
| AAATCTCAGGATCCTGACAA+TGG | 0.601386 | 1_1:+79368099 | Msa0046950:CDS |
| GACGAACAAATTCCCTGCCA+CGG | 0.607260 | 1_1:+79369830 | Msa0046950:CDS |
| TGTTGAAACATTAAGAGCAA+AGG | 0.611502 | 1_1:+79369162 | Msa0046950:CDS |
| TATCTTGTTCCCACCTGCTG+CGG | 0.616019 | 1_1:-79369806 | None:intergenic |
| GCATCAGCTGATGACTCAGA+AGG | 0.620005 | 1_1:-79369643 | None:intergenic |
| CTGATGCAAAACGAGTAAGA+AGG | 0.628581 | 1_1:+79368486 | Msa0046950:CDS |
| TTTGAGATTGACATCAACGG+TGG | 0.645017 | 1_1:-79367214 | None:intergenic |
| TCAGACGATGAGGAAGCTGA+GGG | 0.659901 | 1_1:+79368434 | Msa0046950:CDS |
| ATGTCCAGTCATGATATGAG+AGG | 0.664118 | 1_1:+79369727 | Msa0046950:CDS |
| GGTGTTTAATGCAATGTCTG+AGG | 0.664829 | 1_1:+79369585 | Msa0046950:CDS |
| AGAAGAACACCGCAGCAGGT+GGG | 0.666761 | 1_1:+79369797 | Msa0046950:CDS |
| AAGTGGATCATCAGACGATG+AGG | 0.668470 | 1_1:+79368424 | Msa0046950:CDS |
| TGTTCCAAGCTAGCCACCCG+TGG | 0.670248 | 1_1:-79369847 | None:intergenic |
| TACCCTCGACTTAGCGACGG+CGG | 0.681240 | 1_1:-79367304 | None:intergenic |
| AAACCTTTCAAAGTAGCCAG+AGG | 0.696494 | 1_1:-79368153 | None:intergenic |
| ATATACCCTCGACTTAGCGA+CGG | 0.708838 | 1_1:-79367307 | None:intergenic |
| CTTCAGAGTCGAATTCGTGG+TGG | 0.718456 | 1_1:+79369871 | Msa0046950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAATTGCA+TGG | - | chr1_1:79367370-79367389 | None:intergenic | 10.0% |
| !! | ATATAATATTCTATCTTATT+AGG | + | chr1_1:79369036-79369055 | Msa0046950:intron | 10.0% |
| !! | TAGTAAATTAAATTGTATCA+GGG | - | chr1_1:79367405-79367424 | None:intergenic | 15.0% |
| !! | ATAGTAAATTAAATTGTATC+AGG | - | chr1_1:79367406-79367425 | None:intergenic | 15.0% |
| !!! | TATATAGCTTTTGAATATTA+CGG | - | chr1_1:79367543-79367562 | None:intergenic | 15.0% |
| !!! | TCTTTATTTTGTAATTTAGA+TGG | - | chr1_1:79368338-79368357 | None:intergenic | 15.0% |
| !!! | ATAAGTTATTTCTATAATCA+AGG | - | chr1_1:79368753-79368772 | None:intergenic | 15.0% |
| !! | TGTATAAAATACTTAATTCA+GGG | - | chr1_1:79368813-79368832 | None:intergenic | 15.0% |
| !! | TTGTATAAAATACTTAATTC+AGG | - | chr1_1:79368814-79368833 | None:intergenic | 15.0% |
| !! | AAAAATGAGAACAATATAAA+GGG | - | chr1_1:79369515-79369534 | None:intergenic | 15.0% |
| !! | TAAAAATGAGAACAATATAA+AGG | - | chr1_1:79369516-79369535 | None:intergenic | 15.0% |
| !!! | TTATATTGTTCTCATTTTTA+AGG | + | chr1_1:79369516-79369535 | Msa0046950:intron | 15.0% |
| !!! | ACTATATATTTTTTTGTGTG+TGG | + | chr1_1:79367421-79367440 | Msa0046950:intron | 20.0% |
| !! | TTAATTCTGTCAACATATAT+GGG | - | chr1_1:79367707-79367726 | None:intergenic | 20.0% |
| !! | TTTAATTCTGTCAACATATA+TGG | - | chr1_1:79367708-79367727 | None:intergenic | 20.0% |
| !!! | TAGTAGATCACAATTTTTTA+AGG | + | chr1_1:79368254-79368273 | Msa0046950:intron | 20.0% |
| !!! | AGTAGATCACAATTTTTTAA+GGG | + | chr1_1:79368255-79368274 | Msa0046950:intron | 20.0% |
| !!! | TTTTATTCATATGTAGAATG+CGG | + | chr1_1:79368296-79368315 | Msa0046950:intron | 20.0% |
| !! | AAACTATAATAGAGATTTCA+CGG | - | chr1_1:79368682-79368701 | None:intergenic | 20.0% |
| !! | GACATTAGATTATTAGATAA+GGG | - | chr1_1:79369712-79369731 | None:intergenic | 20.0% |
| !!! | CTAGTCTAATTTTTTTAACT+GGG | + | chr1_1:79370015-79370034 | Msa0046950:three_prime_UTR | 20.0% |
| !! | CTTAGATTAATTAGATATGA+TGG | + | chr1_1:79370201-79370220 | Msa0046950:three_prime_UTR | 20.0% |
| ! | AAGAAAGAAAGACAAGAAAA+TGG | + | chr1_1:79366987-79367006 | Msa0046950:exon | 25.0% |
| ! | GTTATCAATTGCTGAAATAA+CGG | + | chr1_1:79367017-79367036 | Msa0046950:CDS | 25.0% |
| !!! | CAATAATAGTATTGATTCTG+AGG | + | chr1_1:79367239-79367258 | Msa0046950:CDS | 25.0% |
| !!! | TAGTTTTGATTCTTCAAAGT+TGG | + | chr1_1:79367980-79367999 | Msa0046950:intron | 25.0% |
| ! | AAACATGGTAAATACATTGA+AGG | + | chr1_1:79368226-79368245 | Msa0046950:intron | 25.0% |
| ! | TCAAATTAGTCAATCTAAAC+AGG | - | chr1_1:79368572-79368591 | None:intergenic | 25.0% |
| ! | AACACTTGAGAAATTATTTG+AGG | + | chr1_1:79368609-79368628 | Msa0046950:intron | 25.0% |
| ! | ACACTTGAGAAATTATTTGA+GGG | + | chr1_1:79368610-79368629 | Msa0046950:intron | 25.0% |
| ! | AACTATAATAGAGATTTCAC+GGG | - | chr1_1:79368681-79368700 | None:intergenic | 25.0% |
| ! | ATTTGAACGACTAATTAAGA+TGG | - | chr1_1:79369006-79369025 | None:intergenic | 25.0% |
| !! | AGCAGAATTGTTGAATTTTT+GGG | - | chr1_1:79369116-79369135 | None:intergenic | 25.0% |
| ! | AACTACTTTACTAGTAAAAC+TGG | + | chr1_1:79369199-79369218 | Msa0046950:intron | 25.0% |
| ! | ACACATAAATCAATTGGAAA+TGG | - | chr1_1:79369462-79369481 | None:intergenic | 25.0% |
| !! | TCCAATTGATTTATGTGTAT+TGG | + | chr1_1:79369464-79369483 | Msa0046950:intron | 25.0% |
| ! | GGTTGAAAAAAGTGATTATT+TGG | - | chr1_1:79369691-79369710 | None:intergenic | 25.0% |
| ! | GGACATTAGATTATTAGATA+AGG | - | chr1_1:79369713-79369732 | None:intergenic | 25.0% |
| !!! | GCTAGTCTAATTTTTTTAAC+TGG | + | chr1_1:79370014-79370033 | Msa0046950:three_prime_UTR | 25.0% |
| ! | TATATGCTGCTATTCTTTTC+TGG | - | chr1_1:79366949-79366968 | None:intergenic | 30.0% |
| GAGATACAACAAAGATGAAT+CGG | + | chr1_1:79367076-79367095 | Msa0046950:CDS | 30.0% | |
| ! | GTTGTTCACGTAAAAACTTT+TGG | - | chr1_1:79367122-79367141 | None:intergenic | 30.0% |
| !!! | GATTTTGAGATTGACATCAA+CGG | - | chr1_1:79367220-79367239 | None:intergenic | 30.0% |
| !! | TATTGATTCTGAGGATTATC+AGG | + | chr1_1:79367248-79367267 | Msa0046950:CDS | 30.0% |
| ! | GTGTGCATATGTTAATCTTT+TGG | - | chr1_1:79367473-79367492 | None:intergenic | 30.0% |
| ! | CACAATTTTACGTGTATGTT+TGG | + | chr1_1:79367490-79367509 | Msa0046950:intron | 30.0% |
| TACGTGTATGTTTGGATATT+CGG | + | chr1_1:79367498-79367517 | Msa0046950:intron | 30.0% | |
| ! | ATAGCTTTTGAATATTACGG+TGG | - | chr1_1:79367540-79367559 | None:intergenic | 30.0% |
| !! | ATTAATTTGCGAAATTGGGA+TGG | + | chr1_1:79367627-79367646 | Msa0046950:intron | 30.0% |
| ATGTGACTTTGGTAAAATCA+CGG | - | chr1_1:79367657-79367676 | None:intergenic | 30.0% | |
| GTTTATTATCGATGTGACTT+TGG | - | chr1_1:79367668-79367687 | None:intergenic | 30.0% | |
| ! | ATGTTTTCTTTTACTCCTCA+TGG | + | chr1_1:79368058-79368077 | Msa0046950:intron | 30.0% |
| TGGTAAATACATTGAAGGAA+AGG | + | chr1_1:79368231-79368250 | Msa0046950:intron | 30.0% | |
| AAAGATATCAAAGTTGCTGT+TGG | + | chr1_1:79368353-79368372 | Msa0046950:CDS | 30.0% | |
| ! | AAGATATCAAAGTTGCTGTT+GGG | + | chr1_1:79368354-79368373 | Msa0046950:CDS | 30.0% |
| TATTAGGTCTCTGAATTAAG+AGG | + | chr1_1:79369052-79369071 | Msa0046950:intron | 30.0% | |
| ! | CAGCAGAATTGTTGAATTTT+TGG | - | chr1_1:79369117-79369136 | None:intergenic | 30.0% |
| TGTTGAAACATTAAGAGCAA+AGG | + | chr1_1:79369162-79369181 | Msa0046950:CDS | 30.0% | |
| GCCAATACACATAAATCAAT+TGG | - | chr1_1:79369468-79369487 | None:intergenic | 30.0% | |
| !!! | TCTCATTTTTAAGGTGAAGA+TGG | + | chr1_1:79369525-79369544 | Msa0046950:intron | 30.0% |
| GAGACAGTTAAAAGATTTAC+TGG | + | chr1_1:79369553-79369572 | Msa0046950:CDS | 30.0% | |
| ATGGGAATGTCATTATTTGA+TGG | + | chr1_1:79369616-79369635 | Msa0046950:CDS | 30.0% | |
| ATTCTATCACTTGTCTTCTT+CGG | - | chr1_1:79369899-79369918 | None:intergenic | 30.0% | |
| !! | TCTGTGCTATTTGAAAGTTT+AGG | + | chr1_1:79369970-79369989 | Msa0046950:three_prime_UTR | 30.0% |
| !! | TTTTTAACTGGGAAAATTCC+TGG | + | chr1_1:79370026-79370045 | Msa0046950:three_prime_UTR | 30.0% |
| !!! | TTGTTTCTTTTAAGGCCTAT+TGG | - | chr1_1:79370070-79370089 | None:intergenic | 30.0% |
| !! | GGGAGAATTTGTTTCTTTTA+AGG | - | chr1_1:79370078-79370097 | None:intergenic | 30.0% |
| ! | CTGAAATAACGGAGCAATAT+TGG | + | chr1_1:79367028-79367047 | Msa0046950:CDS | 35.0% |
| GTTGAAGTTGAAGATGAAGA+AGG | - | chr1_1:79367180-79367199 | None:intergenic | 35.0% | |
| TGGATATTCGGTCAAAATCA+CGG | + | chr1_1:79367510-79367529 | Msa0046950:intron | 35.0% | |
| AAACATGCACAAAATCACGA+TGG | - | chr1_1:79367594-79367613 | None:intergenic | 35.0% | |
| GTGCATGTTTGATATTACAG+CGG | + | chr1_1:79367604-79367623 | Msa0046950:intron | 35.0% | |
| !! | AGCGGATTAATTTGCGAAAT+TGG | + | chr1_1:79367622-79367641 | Msa0046950:intron | 35.0% |
| !! | GCGGATTAATTTGCGAAATT+GGG | + | chr1_1:79367623-79367642 | Msa0046950:intron | 35.0% |
| GAATGCATGAATCATGCAAT+TGG | - | chr1_1:79367829-79367848 | None:intergenic | 35.0% | |
| AAGCTTAGATGAAAACCTAG+TGG | - | chr1_1:79367851-79367870 | None:intergenic | 35.0% | |
| TCCAAACAATTATCAACCCA+AGG | + | chr1_1:79367890-79367909 | Msa0046950:intron | 35.0% | |
| !! | TCCTTGGGTTGATAATTGTT+TGG | - | chr1_1:79367894-79367913 | None:intergenic | 35.0% |
| CTAATTAACAAGCACTCCTT+GGG | - | chr1_1:79367909-79367928 | None:intergenic | 35.0% | |
| ACTAATTAACAAGCACTCCT+TGG | - | chr1_1:79367910-79367929 | None:intergenic | 35.0% | |
| ! | TTTTACTCCTCATGGCAATA+GGG | + | chr1_1:79368066-79368085 | Msa0046950:intron | 35.0% |
| TGTCTGCATATGTGAAAACA+TGG | + | chr1_1:79368211-79368230 | Msa0046950:intron | 35.0% | |
| ! | AGATATCAAAGTTGCTGTTG+GGG | + | chr1_1:79368355-79368374 | Msa0046950:CDS | 35.0% |
| ATTGTAACAGCAGGTTTCTT+TGG | - | chr1_1:79368392-79368411 | None:intergenic | 35.0% | |
| ACAATCAAGTCAACAACAAG+TGG | + | chr1_1:79368407-79368426 | Msa0046950:CDS | 35.0% | |
| GAGGGAGAGATTAATATGAA+TGG | + | chr1_1:79368452-79368471 | Msa0046950:CDS | 35.0% | |
| ! | TTACTCGTTTTGCATCAGTA+GGG | - | chr1_1:79368484-79368503 | None:intergenic | 35.0% |
| ! | GTTTTGCACAAGAAATCTTC+TGG | + | chr1_1:79368519-79368538 | Msa0046950:intron | 35.0% |
| AAATTATTTGAGGGAGATCG+TGG | + | chr1_1:79368619-79368638 | Msa0046950:intron | 35.0% | |
| TTTCAGGATGCTCTCTAATA+GGG | + | chr1_1:79368862-79368881 | Msa0046950:intron | 35.0% | |
| TTTAACTGAGCTTGAAACAC+AGG | + | chr1_1:79368922-79368941 | Msa0046950:CDS | 35.0% | |
| AGAAGAGAATGCAGAAGAAA+TGG | - | chr1_1:79368970-79368989 | None:intergenic | 35.0% | |
| AGAATCTTGATCCAAGTAGT+AGG | - | chr1_1:79369234-79369253 | None:intergenic | 35.0% | |
| AGTTTACACAGTCAGTACAT+CGG | + | chr1_1:79369273-79369292 | Msa0046950:intron | 35.0% | |
| GTGACTGCTTAGATTAAGAT+CGG | + | chr1_1:79369295-79369314 | Msa0046950:intron | 35.0% | |
| ! | AATTGGAAATGGATTCCTTC+TGG | - | chr1_1:79369451-79369470 | None:intergenic | 35.0% |
| TCAGACATTGCATTAAACAC+CGG | - | chr1_1:79369586-79369605 | None:intergenic | 35.0% | |
| ! | AATGTCTGAGGTATCATCAA+TGG | + | chr1_1:79369597-79369616 | Msa0046950:CDS | 35.0% |
| ! | ATGTCTGAGGTATCATCAAT+GGG | + | chr1_1:79369598-79369617 | Msa0046950:CDS | 35.0% |
| TTATTTGGATCTTCTTGCAC+AGG | - | chr1_1:79369676-79369695 | None:intergenic | 35.0% | |
| AATGCTTCCCGATCTATTAT+TGG | - | chr1_1:79369755-79369774 | None:intergenic | 35.0% | |
| GCTCAAAAGTCAACAAGAAT+AGG | - | chr1_1:79369996-79370015 | None:intergenic | 35.0% | |
| AATTCCTGGAGATAGGAATT+AGG | + | chr1_1:79370040-79370059 | Msa0046950:three_prime_UTR | 35.0% | |
| TAGGAATTAGGATAGCCAAT+AGG | + | chr1_1:79370052-79370071 | Msa0046950:three_prime_UTR | 35.0% | |
| TATGTTCCAAACATGCTTCT+GGG | - | chr1_1:79370098-79370117 | None:intergenic | 35.0% | |
| ATATGTTCCAAACATGCTTC+TGG | - | chr1_1:79370099-79370118 | None:intergenic | 35.0% | |
| TCTAAGTTACACATCAGTCA+TGG | - | chr1_1:79370187-79370206 | None:intergenic | 35.0% | |
| TGAATCGGAGTGATTCAGAA+TGG | + | chr1_1:79367091-79367110 | Msa0046950:CDS | 40.0% | |
| GAATCGGAGTGATTCAGAAT+GGG | + | chr1_1:79367092-79367111 | Msa0046950:CDS | 40.0% | |
| ! | TTTGAGATTGACATCAACGG+TGG | - | chr1_1:79367217-79367236 | None:intergenic | 40.0% |
| !! | ACTTGTTCTAAGGTAGGAGA+AGG | - | chr1_1:79367744-79367763 | None:intergenic | 40.0% |
| !! | ACTAGCACTTGTTCTAAGGT+AGG | - | chr1_1:79367750-79367769 | None:intergenic | 40.0% |
| AGACACTAGCACTTGTTCTA+AGG | - | chr1_1:79367754-79367773 | None:intergenic | 40.0% | |
| CATGATTCATGCATTCCACT+AGG | + | chr1_1:79367833-79367852 | Msa0046950:intron | 40.0% | |
| ! | CTTTTACTCCTCATGGCAAT+AGG | + | chr1_1:79368065-79368084 | Msa0046950:intron | 40.0% |
| AAATCTCAGGATCCTGACAA+TGG | + | chr1_1:79368099-79368118 | Msa0046950:CDS | 40.0% | |
| CCAAGTTCAGAAGGATAAGA+TGG | - | chr1_1:79368132-79368151 | None:intergenic | 40.0% | |
| CCATCTTATCCTTCTGAACT+TGG | + | chr1_1:79368129-79368148 | Msa0046950:CDS | 40.0% | |
| AAACCTTTCAAAGTAGCCAG+AGG | - | chr1_1:79368156-79368175 | None:intergenic | 40.0% | |
| TAGATGGATCGTTTCCAGAA+GGG | - | chr1_1:79368322-79368341 | None:intergenic | 40.0% | |
| TTAGATGGATCGTTTCCAGA+AGG | - | chr1_1:79368323-79368342 | None:intergenic | 40.0% | |
| !! | GTTGACTTGATTGTAACAGC+AGG | - | chr1_1:79368401-79368420 | None:intergenic | 40.0% |
| ! | CTTACTCGTTTTGCATCAGT+AGG | - | chr1_1:79368485-79368504 | None:intergenic | 40.0% |
| CTGATGCAAAACGAGTAAGA+AGG | + | chr1_1:79368486-79368505 | Msa0046950:CDS | 40.0% | |
| !! | CTATTAGAGAGCATCCTGAA+AGG | - | chr1_1:79368863-79368882 | None:intergenic | 40.0% |
| CTTTCAGGATGCTCTCTAAT+AGG | + | chr1_1:79368861-79368880 | Msa0046950:intron | 40.0% | |
| GGTTATAGAAGCCTACTACT+TGG | + | chr1_1:79369220-79369239 | Msa0046950:intron | 40.0% | |
| !! | GTACTGACTGTGTAAACTCA+AGG | - | chr1_1:79369271-79369290 | None:intergenic | 40.0% |
| GGTTACTACTGGATTCAGAT+TGG | - | chr1_1:79369394-79369413 | None:intergenic | 40.0% | |
| ! | GATTCCTTCTGGTTGGAATA+TGG | - | chr1_1:79369440-79369459 | None:intergenic | 40.0% |
| AAGATTTACTGGATCGAACC+CGG | + | chr1_1:79369564-79369583 | Msa0046950:CDS | 40.0% | |
| CAGACATTGCATTAAACACC+GGG | - | chr1_1:79369585-79369604 | None:intergenic | 40.0% | |
| GGTGTTTAATGCAATGTCTG+AGG | + | chr1_1:79369585-79369604 | Msa0046950:CDS | 40.0% | |
| ATGTCCAGTCATGATATGAG+AGG | + | chr1_1:79369727-79369746 | Msa0046950:CDS | 40.0% | |
| GAGAGGAGCCAATAATAGAT+CGG | + | chr1_1:79369744-79369763 | Msa0046950:CDS | 40.0% | |
| AGAGGAGCCAATAATAGATC+GGG | + | chr1_1:79369745-79369764 | Msa0046950:CDS | 40.0% | |
| CTATCCTAATTCCTATCTCC+AGG | - | chr1_1:79370047-79370066 | None:intergenic | 40.0% | |
| ! | AATTCTCCCAGAAGCATGTT+TGG | + | chr1_1:79370089-79370108 | Msa0046950:three_prime_UTR | 40.0% |
| ATATACCCTCGACTTAGCGA+CGG | - | chr1_1:79367310-79367329 | None:intergenic | 45.0% | |
| TGTGTGGCAATCTGCTTTCA+TGG | + | chr1_1:79367437-79367456 | Msa0046950:intron | 45.0% | |
| GTGTGGCAATCTGCTTTCAT+GGG | + | chr1_1:79367438-79367457 | Msa0046950:intron | 45.0% | |
| CAAAGATCCCTATTGCCATG+AGG | - | chr1_1:79368076-79368095 | None:intergenic | 45.0% | |
| CTCATGGCAATAGGGATCTT+TGG | + | chr1_1:79368074-79368093 | Msa0046950:intron | 45.0% | |
| GGGATCTTTGGTCAAATCTC+AGG | + | chr1_1:79368086-79368105 | Msa0046950:intron | 45.0% | |
| AAGTGGATCATCAGACGATG+AGG | + | chr1_1:79368424-79368443 | Msa0046950:CDS | 45.0% | |
| AGGCAATGTCATCAGGCATT+AGG | - | chr1_1:79368843-79368862 | None:intergenic | 45.0% | |
| TCCTGAAAGGCAATGTCATC+AGG | - | chr1_1:79368850-79368869 | None:intergenic | 45.0% | |
| GGATGCTTGAGATTCAACCT+CGG | + | chr1_1:79369316-79369335 | Msa0046950:intron | 45.0% | |
| ! | GGAAATGGATTCCTTCTGGT+TGG | - | chr1_1:79369447-79369466 | None:intergenic | 45.0% |
| CATCTTCAGAGTCGAATTCG+TGG | + | chr1_1:79369868-79369887 | Msa0046950:CDS | 45.0% | |
| CTGGGAAAATTCCTGGAGAT+AGG | + | chr1_1:79370033-79370052 | Msa0046950:three_prime_UTR | 45.0% | |
| ! | GTTGACTTCGAAAGCGTGCA+AGG | + | chr1_1:79367050-79367069 | Msa0046950:CDS | 50.0% |
| ! | ACTTCGAAAGCGTGCAAGGA+AGG | + | chr1_1:79367054-79367073 | Msa0046950:CDS | 50.0% |
| GATGGCTGTGATCCATTGTC+AGG | - | chr1_1:79368114-79368133 | None:intergenic | 50.0% | |
| TCCTTCTGAACTTGGACCTC+TGG | + | chr1_1:79368137-79368156 | Msa0046950:CDS | 50.0% | |
| ! | GGACCTCTGGCTACTTTGAA+AGG | + | chr1_1:79368150-79368169 | Msa0046950:CDS | 50.0% |
| TATGTAGAATGCGGCCCTTC+TGG | + | chr1_1:79368305-79368324 | Msa0046950:intron | 50.0% | |
| GCAGGTTTCTTTGGCATGCA+AGG | - | chr1_1:79368383-79368402 | None:intergenic | 50.0% | |
| ATCAGACGATGAGGAAGCTG+AGG | + | chr1_1:79368433-79368452 | Msa0046950:CDS | 50.0% | |
| TCAGACGATGAGGAAGCTGA+GGG | + | chr1_1:79368434-79368453 | Msa0046950:CDS | 50.0% | |
| GCCTGATGACATTGCCTTTC+AGG | + | chr1_1:79368846-79368865 | Msa0046950:intron | 50.0% | |
| TCTTCGTCTTGAGCGTCTAG+CGG | - | chr1_1:79368891-79368910 | None:intergenic | 50.0% | |
| TGCTTGAGATTCAACCTCGG+TGG | + | chr1_1:79369319-79369338 | Msa0046950:intron | 50.0% | |
| ATTCAACCTCGGTGGTGCTT+TGG | + | chr1_1:79369327-79369346 | Msa0046950:intron | 50.0% | |
| ! | GAAAATCCAAAGCACCACCG+AGG | - | chr1_1:79369336-79369355 | None:intergenic | 50.0% |
| AGTCAGGCAAGGGTTACTAC+TGG | - | chr1_1:79369405-79369424 | None:intergenic | 50.0% | |
| ! | CCTTCTGGTTGGAATATGGC+TGG | - | chr1_1:79369436-79369455 | None:intergenic | 50.0% |
| CCAGCCATATTCCAACCAGA+AGG | + | chr1_1:79369433-79369452 | Msa0046950:intron | 50.0% | |
| GCATCAGCTGATGACTCAGA+AGG | - | chr1_1:79369646-79369665 | None:intergenic | 50.0% | |
| GGCTCCTCTCATATCATGAC+TGG | - | chr1_1:79369734-79369753 | None:intergenic | 50.0% | |
| TATCTTGTTCCCACCTGCTG+CGG | - | chr1_1:79369809-79369828 | None:intergenic | 50.0% | |
| GACGAACAAATTCCCTGCCA+CGG | + | chr1_1:79369830-79369849 | Msa0046950:CDS | 50.0% | |
| ACGAACAAATTCCCTGCCAC+GGG | + | chr1_1:79369831-79369850 | Msa0046950:CDS | 50.0% | |
| CTTCAGAGTCGAATTCGTGG+TGG | + | chr1_1:79369871-79369890 | Msa0046950:CDS | 50.0% | |
| GGCGCAAGCAAGATCAAGCT+TGG | - | chr1_1:79367286-79367305 | None:intergenic | 55.0% | |
| GCCAGAGGTCCAAGTTCAGA+AGG | - | chr1_1:79368141-79368160 | None:intergenic | 55.0% | |
| GGATTCACGCAGTCAGGCAA+GGG | - | chr1_1:79369415-79369434 | None:intergenic | 55.0% | |
| TGGATTCACGCAGTCAGGCA+AGG | - | chr1_1:79369416-79369435 | None:intergenic | 55.0% | |
| ATGGCTGGATTCACGCAGTC+AGG | - | chr1_1:79369421-79369440 | None:intergenic | 55.0% | |
| AGAAGAACACCGCAGCAGGT+GGG | + | chr1_1:79369797-79369816 | Msa0046950:CDS | 55.0% | |
| GCAGCAGGTGGGAACAAGAT+AGG | + | chr1_1:79369808-79369827 | Msa0046950:CDS | 55.0% | |
| AACAAATTCCCTGCCACGGG+TGG | + | chr1_1:79369834-79369853 | Msa0046950:CDS | 55.0% | |
| TACCCTCGACTTAGCGACGG+CGG | - | chr1_1:79367307-79367326 | None:intergenic | 60.0% | |
| GTGCAGAAGAACACCGCAGC+AGG | + | chr1_1:79369793-79369812 | Msa0046950:CDS | 60.0% | |
| CAGAAGAACACCGCAGCAGG+TGG | + | chr1_1:79369796-79369815 | Msa0046950:CDS | 60.0% | |
| TGTTCCAAGCTAGCCACCCG+TGG | - | chr1_1:79369850-79369869 | None:intergenic | 60.0% | |
| CAAGCTAGCCACCCGTGGCA+GGG | - | chr1_1:79369845-79369864 | None:intergenic | 65.0% | |
| CGCCGCCGTCGCTAAGTCGA+GGG | + | chr1_1:79367302-79367321 | Msa0046950:CDS | 70.0% | |
| CCAAGCTAGCCACCCGTGGC+AGG | - | chr1_1:79369846-79369865 | None:intergenic | 70.0% | |
| ! | CCTGCCACGGGTGGCTAGCT+TGG | + | chr1_1:79369843-79369862 | Msa0046950:CDS | 70.0% |
| GCGCCGCCGTCGCTAAGTCG+AGG | + | chr1_1:79367301-79367320 | Msa0046950:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 79366946 | 79370225 | 79366946 | ID=Msa0046950;Name=Msa0046950 |
| chr1_1 | mRNA | 79366946 | 79370225 | 79366946 | ID=Msa0046950-mRNA-1;Parent=Msa0046950;Name=Msa0046950-mRNA-1;_AED=0.08;_eAED=0.08;_QI=60|1|1|1|1|1|6|313|391 |
| chr1_1 | exon | 79366946 | 79367323 | 79366946 | ID=Msa0046950-mRNA-1:exon:27367;Parent=Msa0046950-mRNA-1 |
| chr1_1 | exon | 79368087 | 79368171 | 79368087 | ID=Msa0046950-mRNA-1:exon:27368;Parent=Msa0046950-mRNA-1 |
| chr1_1 | exon | 79368312 | 79368507 | 79368312 | ID=Msa0046950-mRNA-1:exon:27369;Parent=Msa0046950-mRNA-1 |
| chr1_1 | exon | 79368868 | 79368943 | 79368868 | ID=Msa0046950-mRNA-1:exon:27370;Parent=Msa0046950-mRNA-1 |
| chr1_1 | exon | 79369058 | 79369183 | 79369058 | ID=Msa0046950-mRNA-1:exon:27371;Parent=Msa0046950-mRNA-1 |
| chr1_1 | exon | 79369538 | 79370225 | 79369538 | ID=Msa0046950-mRNA-1:exon:27372;Parent=Msa0046950-mRNA-1 |
| chr1_1 | five_prime_UTR | 79366946 | 79367005 | 79366946 | ID=Msa0046950-mRNA-1:five_prime_utr;Parent=Msa0046950-mRNA-1 |
| chr1_1 | CDS | 79367006 | 79367323 | 79367006 | ID=Msa0046950-mRNA-1:cds;Parent=Msa0046950-mRNA-1 |
| chr1_1 | CDS | 79368087 | 79368171 | 79368087 | ID=Msa0046950-mRNA-1:cds;Parent=Msa0046950-mRNA-1 |
| chr1_1 | CDS | 79368312 | 79368507 | 79368312 | ID=Msa0046950-mRNA-1:cds;Parent=Msa0046950-mRNA-1 |
| chr1_1 | CDS | 79368868 | 79368943 | 79368868 | ID=Msa0046950-mRNA-1:cds;Parent=Msa0046950-mRNA-1 |
| chr1_1 | CDS | 79369058 | 79369183 | 79369058 | ID=Msa0046950-mRNA-1:cds;Parent=Msa0046950-mRNA-1 |
| chr1_1 | CDS | 79369538 | 79369912 | 79369538 | ID=Msa0046950-mRNA-1:cds;Parent=Msa0046950-mRNA-1 |
| chr1_1 | three_prime_UTR | 79369913 | 79370225 | 79369913 | ID=Msa0046950-mRNA-1:three_prime_utr;Parent=Msa0046950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
