Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371400 | XP_013461050.1 | 98.012 | 503 | 10 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1011 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371400 | sp|Q8VWZ1|AADH1_PEA | 92.445 | 503 | 38 | 0 | 1 | 503 | 1 | 503 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371400 | A0A072UZ53 | 98.012 | 503 | 10 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1011 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0371400 | Msa0419600 | 0.975434 | 6.027778e-140 | -8.615850e-47 |
| Msa0371400 | Msa0465700 | 0.869156 | 3.822944e-66 | -8.615850e-47 |
| Msa0371400 | Msa0511700 | 0.870042 | 1.967587e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371400 | MtrunA17_Chr3g0118121 | 98.012 | 503 | 10 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1011 |
| Msa0371400 | MtrunA17_Chr3g0118081 | 92.445 | 503 | 38 | 0 | 1 | 503 | 31 | 533 | 0.0 | 936 |
| Msa0371400 | MtrunA17_Chr4g0059521 | 83.698 | 503 | 82 | 0 | 1 | 503 | 1 | 503 | 0.0 | 847 |
| Msa0371400 | MtrunA17_Chr8g0390631 | 41.379 | 493 | 278 | 5 | 4 | 494 | 10 | 493 | 1.31e-125 | 375 |
| Msa0371400 | MtrunA17_Chr6g0485301 | 41.988 | 493 | 275 | 5 | 4 | 494 | 18 | 501 | 5.71e-123 | 369 |
| Msa0371400 | MtrunA17_Chr6g0485311 | 40.974 | 493 | 280 | 5 | 4 | 494 | 16 | 499 | 6.89e-122 | 366 |
| Msa0371400 | MtrunA17_Chr8g0365221 | 39.148 | 493 | 287 | 6 | 5 | 494 | 58 | 540 | 3.67e-119 | 360 |
| Msa0371400 | MtrunA17_Chr8g0390651 | 39.474 | 494 | 286 | 6 | 4 | 494 | 19 | 502 | 3.75e-117 | 354 |
| Msa0371400 | MtrunA17_Chr2g0310091 | 40.042 | 477 | 276 | 3 | 9 | 485 | 63 | 529 | 9.93e-116 | 352 |
| Msa0371400 | MtrunA17_Chr4g0059221 | 39.673 | 489 | 282 | 6 | 9 | 494 | 65 | 543 | 2.52e-114 | 348 |
| Msa0371400 | MtrunA17_Chr3g0117861 | 38.809 | 487 | 285 | 6 | 11 | 494 | 65 | 541 | 3.70e-113 | 345 |
| Msa0371400 | MtrunA17_Chr4g0074171 | 34.322 | 472 | 281 | 11 | 9 | 470 | 17 | 469 | 2.93e-67 | 224 |
| Msa0371400 | MtrunA17_Chr1g0149961 | 33.617 | 470 | 283 | 11 | 11 | 470 | 19 | 469 | 1.34e-65 | 220 |
| Msa0371400 | MtrunA17_Chr2g0294411 | 28.747 | 487 | 325 | 8 | 23 | 499 | 64 | 538 | 1.36e-60 | 209 |
| Msa0371400 | MtrunA17_Chr2g0300801 | 29.607 | 483 | 307 | 12 | 11 | 480 | 25 | 487 | 1.11e-56 | 196 |
| Msa0371400 | MtrunA17_Chr2g0279751 | 29.979 | 477 | 301 | 10 | 25 | 487 | 32 | 489 | 5.45e-52 | 184 |
| Msa0371400 | MtrunA17_Chr4g0049641 | 28.184 | 479 | 323 | 9 | 25 | 495 | 59 | 524 | 7.18e-51 | 181 |
| Msa0371400 | MtrunA17_Chr3g0124811 | 29.665 | 418 | 278 | 8 | 74 | 485 | 40 | 447 | 7.71e-44 | 161 |
| Msa0371400 | MtrunA17_Chr8g0372381 | 29.930 | 431 | 288 | 9 | 60 | 485 | 17 | 438 | 3.06e-42 | 157 |
| Msa0371400 | MtrunA17_Chr8g0384741 | 30.211 | 427 | 276 | 10 | 68 | 485 | 85 | 498 | 5.74e-41 | 154 |
| Msa0371400 | MtrunA17_Chr1g0159811 | 30.769 | 338 | 219 | 7 | 130 | 462 | 95 | 422 | 5.23e-38 | 145 |
| Msa0371400 | MtrunA17_Chr2g0328781 | 27.292 | 480 | 299 | 16 | 46 | 500 | 12 | 466 | 3.33e-36 | 140 |
| Msa0371400 | MtrunA17_Chr4g0032441 | 28.222 | 450 | 303 | 10 | 60 | 500 | 13 | 451 | 2.00e-29 | 120 |
| Msa0371400 | MtrunA17_Chr4g0060261 | 26.557 | 305 | 190 | 11 | 144 | 429 | 187 | 476 | 7.99e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371400 | AT1G74920.1 | 77.246 | 501 | 114 | 0 | 1 | 501 | 1 | 501 | 0.0 | 843 |
| Msa0371400 | AT1G74920.2 | 76.248 | 501 | 114 | 1 | 1 | 501 | 1 | 496 | 0.0 | 828 |
| Msa0371400 | AT3G48170.1 | 75.547 | 503 | 123 | 0 | 1 | 503 | 1 | 503 | 0.0 | 820 |
| Msa0371400 | AT3G24503.1 | 43.238 | 488 | 267 | 5 | 9 | 494 | 21 | 500 | 2.28e-135 | 401 |
| Msa0371400 | AT3G48000.1 | 40.927 | 496 | 280 | 6 | 2 | 494 | 52 | 537 | 2.65e-123 | 371 |
| Msa0371400 | AT1G23800.1 | 38.945 | 493 | 288 | 6 | 5 | 494 | 51 | 533 | 1.90e-114 | 348 |
| Msa0371400 | AT1G79440.1 | 38.994 | 477 | 281 | 3 | 9 | 485 | 54 | 520 | 7.14e-107 | 329 |
| Msa0371400 | AT1G23800.2 | 38.988 | 336 | 194 | 5 | 5 | 337 | 51 | 378 | 3.28e-69 | 227 |
| Msa0371400 | AT3G66658.1 | 31.070 | 486 | 307 | 12 | 22 | 494 | 63 | 533 | 3.04e-65 | 221 |
| Msa0371400 | AT3G66658.2 | 31.070 | 486 | 307 | 12 | 22 | 494 | 63 | 533 | 7.32e-65 | 221 |
| Msa0371400 | AT2G24270.3 | 33.475 | 472 | 285 | 12 | 9 | 470 | 17 | 469 | 1.37e-64 | 218 |
| Msa0371400 | AT2G24270.1 | 33.475 | 472 | 285 | 12 | 9 | 470 | 17 | 469 | 1.37e-64 | 218 |
| Msa0371400 | AT2G24270.4 | 33.475 | 472 | 285 | 12 | 9 | 470 | 17 | 469 | 2.63e-64 | 217 |
| Msa0371400 | AT2G24270.2 | 33.475 | 472 | 285 | 12 | 9 | 470 | 57 | 509 | 2.92e-64 | 218 |
| Msa0371400 | AT1G54100.2 | 29.065 | 492 | 322 | 11 | 11 | 492 | 24 | 498 | 1.43e-56 | 196 |
| Msa0371400 | AT1G54100.1 | 29.065 | 492 | 322 | 11 | 11 | 492 | 24 | 498 | 1.43e-56 | 196 |
| Msa0371400 | AT2G14170.2 | 29.289 | 478 | 312 | 10 | 25 | 494 | 22 | 481 | 1.29e-53 | 188 |
| Msa0371400 | AT2G14170.1 | 29.289 | 478 | 312 | 10 | 25 | 494 | 131 | 590 | 7.54e-53 | 189 |
| Msa0371400 | AT2G14170.3 | 29.167 | 456 | 305 | 8 | 25 | 475 | 131 | 573 | 8.18e-51 | 183 |
| Msa0371400 | AT1G44170.3 | 31.025 | 361 | 234 | 7 | 130 | 485 | 28 | 378 | 1.03e-44 | 162 |
| Msa0371400 | AT1G44170.1 | 31.025 | 361 | 234 | 7 | 130 | 485 | 91 | 441 | 2.31e-44 | 163 |
| Msa0371400 | AT1G44170.2 | 31.025 | 361 | 234 | 7 | 130 | 485 | 91 | 441 | 2.31e-44 | 163 |
| Msa0371400 | AT4G36250.1 | 26.856 | 458 | 301 | 12 | 42 | 485 | 3 | 440 | 9.96e-35 | 136 |
| Msa0371400 | AT4G34240.4 | 29.466 | 431 | 285 | 10 | 61 | 485 | 72 | 489 | 1.93e-32 | 130 |
| Msa0371400 | AT4G34240.1 | 29.466 | 431 | 285 | 10 | 61 | 485 | 87 | 504 | 2.60e-32 | 130 |
| Msa0371400 | AT4G34240.3 | 30.812 | 357 | 230 | 9 | 136 | 485 | 16 | 362 | 2.85e-31 | 125 |
| Msa0371400 | AT4G34240.2 | 31.190 | 311 | 200 | 8 | 61 | 367 | 87 | 387 | 2.63e-20 | 93.2 |
Find 128 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATCTCTACCTTTGTTTC+TGG | 0.123105 | 3_1:-69546138 | None:intergenic |
| GGCATTAAACGTAGCGGTTT+TGG | 0.217699 | 3_1:+69549436 | Msa0371400:CDS |
| TTTAATATTGTTACCGGATT+AGG | 0.224280 | 3_1:+69547230 | Msa0371400:CDS |
| CTTCAGAACATGGCTCTTAA+AGG | 0.270910 | 3_1:-69546825 | None:intergenic |
| AGAGATTGGTCCACTGCTTC+TGG | 0.281087 | 3_1:+69546152 | Msa0371400:CDS |
| TCAGTGGAGGGATTGATTAT+TGG | 0.289338 | 3_1:-69545932 | None:intergenic |
| CTGAAGTCTGGCATCGAATA+AGG | 0.289540 | 3_1:+69549721 | Msa0371400:three_prime_UTR |
| TAGGAACTATCCTCTCTTAA+TGG | 0.308920 | 3_1:+69546997 | Msa0371400:intron |
| GGCTGAAAATATCAAAATTT+CGG | 0.313683 | 3_1:+69548180 | Msa0371400:CDS |
| TCTACCTTTGTTTCTGGAAA+TGG | 0.315025 | 3_1:-69546132 | None:intergenic |
| TGACTACCTCGATGCAAATT+TGG | 0.321570 | 3_1:+69549012 | Msa0371400:CDS |
| GTATTTCACAGCTATGGCTT+GGG | 0.324222 | 3_1:+69549198 | Msa0371400:intron |
| GTTGCTGAATGGACCATCTT+TGG | 0.343607 | 3_1:+69547839 | Msa0371400:intron |
| GCGTAACAGAGAGGAGAAAA+TGG | 0.355452 | 3_1:+69545838 | Msa0371400:exon |
| TAAATTTGATTTCTGAAGTC+TGG | 0.364661 | 3_1:+69549709 | Msa0371400:three_prime_UTR |
| GCACAACCAGCAGCCAGAGC+TGG | 0.367552 | 3_1:-69547037 | None:intergenic |
| TTGTGAATAAACTTGTGAAA+TGG | 0.372426 | 3_1:+69548158 | Msa0371400:CDS |
| ACCTGTGCTTCACTGACAAT+AGG | 0.380793 | 3_1:-69548232 | None:intergenic |
| AAGATGTGAGCGCGTATCTA+AGG | 0.388834 | 3_1:+69549248 | Msa0371400:CDS |
| AATATTGAAGCCGTCTGAAT+TGG | 0.395523 | 3_1:+69547063 | Msa0371400:CDS |
| CCACCAAGCTCTAGTGAAAC+AGG | 0.398736 | 3_1:-69547598 | None:intergenic |
| TTAAACTTACATGCACAATA+AGG | 0.400421 | 3_1:-69547904 | None:intergenic |
| GGATATACCAGCTGCTACTA+AGG | 0.400740 | 3_1:+69546073 | Msa0371400:CDS |
| GGTATTTCACAGCTATGGCT+TGG | 0.402032 | 3_1:+69549197 | Msa0371400:intron |
| TTTAGGACCTGTTTGGAGTT+GGG | 0.403452 | 3_1:+69547170 | Msa0371400:intron |
| ATCCATTGGAAGAAGGTTGC+AGG | 0.404314 | 3_1:+69548203 | Msa0371400:CDS |
| TTTACCGGTAGCTCTGCAAC+TGG | 0.405109 | 3_1:+69547456 | Msa0371400:CDS |
| TGAGGATGTTGACCTTGATA+AGG | 0.409876 | 3_1:+69547642 | Msa0371400:CDS |
| ATTAATGCAACAACACCAAT+AGG | 0.410007 | 3_1:-69546851 | None:intergenic |
| AGTAGACAATTATTCATAGA+TGG | 0.413804 | 3_1:+69545875 | Msa0371400:CDS |
| ATTCGATAGATTTCCTTTAC+CGG | 0.420727 | 3_1:+69547441 | Msa0371400:intron |
| TTGGAAAATCGCTCCAGCTC+TGG | 0.424242 | 3_1:+69547024 | Msa0371400:CDS |
| ATCCCATCCCGATGTTGATA+AGG | 0.425124 | 3_1:+69547277 | Msa0371400:CDS |
| CCAGAAACAAAGGTAGAGAT+TGG | 0.430993 | 3_1:+69546138 | Msa0371400:CDS |
| CAGCCTGTTTCACTAGAGCT+TGG | 0.432951 | 3_1:+69547595 | Msa0371400:intron |
| GGATGAAGCACTAGCGGATC+TGG | 0.434432 | 3_1:+69546623 | Msa0371400:CDS |
| TTCAATGCAGCATTTAAAGA+AGG | 0.434642 | 3_1:+69548956 | Msa0371400:intron |
| TATCAAAATTTCGGATCCAT+TGG | 0.441214 | 3_1:+69548189 | Msa0371400:CDS |
| TACTATGCGGGGCTTGCTGA+AGG | 0.443897 | 3_1:+69546758 | Msa0371400:CDS |
| TGTGAATAAACTTGTGAAAT+GGG | 0.447654 | 3_1:+69548159 | Msa0371400:CDS |
| CTCTTCAAGCTGGAATTGTA+TGG | 0.448311 | 3_1:+69549371 | Msa0371400:CDS |
| GTTATTAAACAGTTGCTGAA+TGG | 0.450207 | 3_1:+69547828 | Msa0371400:intron |
| GGCTCCTGTATCCCTTCCTA+TGG | 0.450658 | 3_1:+69546799 | Msa0371400:CDS |
| TTATTGTTATCTTAAGTTGT+TGG | 0.457855 | 3_1:+69549765 | Msa0371400:three_prime_UTR |
| GTTAACTATCACAGCTTTGA+AGG | 0.463549 | 3_1:-69549671 | None:intergenic |
| AAATTTATCATCACTTTACA+TGG | 0.464511 | 3_1:-69549693 | None:intergenic |
| TTGGAAGAAGGTTGCAGGCT+AGG | 0.469097 | 3_1:+69548208 | Msa0371400:CDS |
| ATCGCTCCAGCTCTGGCTGC+TGG | 0.469974 | 3_1:+69547031 | Msa0371400:CDS |
| GAGGATGTTGACCTTGATAA+GGG | 0.470972 | 3_1:+69547643 | Msa0371400:CDS |
| AAGTTTATTCACAAATTCTA+CGG | 0.471124 | 3_1:-69548149 | None:intergenic |
| ACCAGCTTCATGGCCTAATC+CGG | 0.472397 | 3_1:-69547243 | None:intergenic |
| ATTTCGGATCCATTGGAAGA+AGG | 0.477666 | 3_1:+69548196 | Msa0371400:CDS |
| CCCTATTGTCAGTGAAGCAC+AGG | 0.482906 | 3_1:+69548231 | Msa0371400:CDS |
| ATTCTGCAGGCTCTTCAAGC+TGG | 0.483750 | 3_1:+69549361 | Msa0371400:intron |
| CCTGTGCTTCACTGACAATA+GGG | 0.485460 | 3_1:-69548231 | None:intergenic |
| GTTCAAACCTTATCAACATC+GGG | 0.486154 | 3_1:-69547284 | None:intergenic |
| AGTTGCAGAGCTACCGGTAA+AGG | 0.487812 | 3_1:-69547454 | None:intergenic |
| CCCTCCACTGAAAATATCAT+AGG | 0.488751 | 3_1:+69545944 | Msa0371400:CDS |
| GTATCCATAGGAAGGGATAC+AGG | 0.493292 | 3_1:-69546803 | None:intergenic |
| TGCGGGGCTTGCTGAAGGGT+TGG | 0.496806 | 3_1:+69546763 | Msa0371400:CDS |
| TATTTCGCCCAACTCCAAAC+AGG | 0.497837 | 3_1:-69547177 | None:intergenic |
| CATGTTCTGAAGGAGCCTAT+TGG | 0.502581 | 3_1:+69546836 | Msa0371400:CDS |
| CGTAAAGAAGCAGCCAAAGA+TGG | 0.503081 | 3_1:-69547852 | None:intergenic |
| GTCACATCGGTTACGATGGT+TGG | 0.503397 | 3_1:-69548993 | None:intergenic |
| AAGCTTCATTCAAGCTCCAT+GGG | 0.506772 | 3_1:+69549411 | Msa0371400:CDS |
| CAAGCTTCATTCAAGCTCCA+TGG | 0.506934 | 3_1:+69549410 | Msa0371400:CDS |
| GCTTCTGGTTCTGTTCGTGC+TGG | 0.509086 | 3_1:+69546167 | Msa0371400:CDS |
| AAAGAAGTTGGCCTTCCTCC+TGG | 0.512329 | 3_1:+69547203 | Msa0371400:CDS |
| AAGCTCCTATACTCAACAAA+AGG | 0.512483 | 3_1:+69545906 | Msa0371400:CDS |
| CCTGTTTCACTAGAGCTTGG+TGG | 0.513971 | 3_1:+69547598 | Msa0371400:CDS |
| TTTGGCTGCTTCTTTACGAA+TGG | 0.514086 | 3_1:+69547857 | Msa0371400:CDS |
| AACCTTATCAACATCGGGAT+GGG | 0.520697 | 3_1:-69547279 | None:intergenic |
| ACATCTTCCTTAGTAGCAGC+TGG | 0.522852 | 3_1:-69546080 | None:intergenic |
| ATACATATCTGATGAGCAGT+GGG | 0.523721 | 3_1:+69549634 | Msa0371400:CDS |
| AGGGTTGGATGCAAAGCAAA+AGG | 0.525153 | 3_1:+69546778 | Msa0371400:CDS |
| TTGGTCGCGAATTAGGAGAA+TGG | 0.527821 | 3_1:+69549455 | Msa0371400:CDS |
| GCTCCCAGTTGCAGAGCTAC+CGG | 0.528239 | 3_1:-69547460 | None:intergenic |
| TCTTCGAGCAATTGCTGCAA+AGG | 0.528718 | 3_1:+69546193 | Msa0371400:CDS |
| ATCCTCTCTTAATGGCGACT+TGG | 0.533379 | 3_1:+69547005 | Msa0371400:CDS |
| CTTTAAGAGCCATGTTCTGA+AGG | 0.535553 | 3_1:+69546826 | Msa0371400:CDS |
| TATTTCACAGCTATGGCTTG+GGG | 0.535756 | 3_1:+69549199 | Msa0371400:intron |
| AATAGATTGTGGAAAGCCAC+TGG | 0.537548 | 3_1:+69546602 | Msa0371400:CDS |
| TATCTGATGAGCAGTGGGGC+TGG | 0.538103 | 3_1:+69549639 | Msa0371400:CDS |
| AACTTAAGATAACAATAACT+TGG | 0.542633 | 3_1:-69549760 | None:intergenic |
| TTGTTGCATTAATTACTCCA+TGG | 0.543900 | 3_1:+69546861 | Msa0371400:CDS |
| GGCGAAATATGCAAAGAAGT+TGG | 0.547648 | 3_1:+69547191 | Msa0371400:CDS |
| TCAATGCAGCATTTAAAGAA+GGG | 0.549849 | 3_1:+69548957 | Msa0371400:intron |
| TCTTAAAGGTATCCATAGGA+AGG | 0.554905 | 3_1:-69546811 | None:intergenic |
| AGGCACACCAACCCTTATCA+AGG | 0.555964 | 3_1:-69547654 | None:intergenic |
| AGCCTGCAACCTTCTTCCAA+TGG | 0.556310 | 3_1:-69548205 | None:intergenic |
| TTAACTATCACAGCTTTGAA+GGG | 0.557676 | 3_1:-69549670 | None:intergenic |
| TAGATCGATTGCTTCTTCCT+CGG | 0.561075 | 3_1:-69549081 | None:intergenic |
| ATCTCAACGGCTAAGAGTGA+AGG | 0.561409 | 3_1:+69548822 | Msa0371400:CDS |
| AGCTGCGGCACAGCTAATCA+AGG | 0.562042 | 3_1:+69547494 | Msa0371400:CDS |
| ACCGGATTAGGCCATGAAGC+TGG | 0.566934 | 3_1:+69547242 | Msa0371400:CDS |
| CATGGAGCTTGAATGAAGCT+TGG | 0.568220 | 3_1:-69549409 | None:intergenic |
| ATAATATTATCATTATAGCA+TGG | 0.568490 | 3_1:+69545752 | Msa0371400:five_prime_UTR |
| TCCGCTAGTGCTTCATCCAG+TGG | 0.569359 | 3_1:-69546618 | None:intergenic |
| CAATAGGCTCCTTCAGAACA+TGG | 0.574620 | 3_1:-69546835 | None:intergenic |
| AGTTCAAACCTTATCAACAT+CGG | 0.576734 | 3_1:-69547285 | None:intergenic |
| GACTGGTGGGCGTCGCCCAG+AGG | 0.577345 | 3_1:+69548857 | Msa0371400:CDS |
| TTCATTCAAGCTCCATGGGG+GGG | 0.578267 | 3_1:+69549415 | Msa0371400:CDS |
| AAGCTTGAATCAATAGATTG+TGG | 0.586574 | 3_1:+69546591 | Msa0371400:CDS |
| AAACCTTATCAACATCGGGA+TGG | 0.586805 | 3_1:-69547280 | None:intergenic |
| TTCCAAGTCGCCATTAAGAG+AGG | 0.587691 | 3_1:-69547007 | None:intergenic |
| TAACTATCACAGCTTTGAAG+GGG | 0.590762 | 3_1:-69549669 | None:intergenic |
| TGGCTCTTAAAGGTATCCAT+AGG | 0.592547 | 3_1:-69546815 | None:intergenic |
| ACTATGCGGGGCTTGCTGAA+GGG | 0.603077 | 3_1:+69546759 | Msa0371400:CDS |
| AATTATTCATAGATGGAGAG+TGG | 0.612529 | 3_1:+69545882 | Msa0371400:CDS |
| TACACAGATGCCAATTCAGA+CGG | 0.614415 | 3_1:-69547073 | None:intergenic |
| AGAGCCATTTCCAGAAACAA+AGG | 0.615015 | 3_1:+69546128 | Msa0371400:CDS |
| GCCACTGGATGAAGCACTAG+CGG | 0.621235 | 3_1:+69546617 | Msa0371400:CDS |
| CTTCATTCAAGCTCCATGGG+GGG | 0.623887 | 3_1:+69549414 | Msa0371400:CDS |
| GATACATATCTGATGAGCAG+TGG | 0.625206 | 3_1:+69549633 | Msa0371400:CDS |
| TTACCGGTAGCTCTGCAACT+GGG | 0.626292 | 3_1:+69547457 | Msa0371400:CDS |
| CTTAAAGGTATCCATAGGAA+GGG | 0.626729 | 3_1:-69546810 | None:intergenic |
| GGTAGTCACATCGGTTACGA+TGG | 0.633466 | 3_1:-69548997 | None:intergenic |
| TTGCATCGAGGTAGTCACAT+CGG | 0.634094 | 3_1:-69549006 | None:intergenic |
| TTCTCTCCAAATTTGCATCG+AGG | 0.647218 | 3_1:-69549018 | None:intergenic |
| ACGAACAGAACCAGAAGCAG+TGG | 0.650272 | 3_1:-69546162 | None:intergenic |
| AGCTTCATTCAAGCTCCATG+GGG | 0.654356 | 3_1:+69549412 | Msa0371400:CDS |
| GCTTCATTCAAGCTCCATGG+GGG | 0.666586 | 3_1:+69549413 | Msa0371400:CDS |
| GAGCAAGATTATGACAGCTG+CGG | 0.668052 | 3_1:+69547479 | Msa0371400:CDS |
| GCTAAGAGTGCGTAACAGAG+AGG | 0.683744 | 3_1:+69545829 | Msa0371400:five_prime_UTR |
| AAGAAAGAAACGTATACACA+AGG | 0.695848 | 3_1:+69545801 | Msa0371400:five_prime_UTR |
| TAACATCAATGAAAGCAACA+TGG | 0.708034 | 3_1:-69549846 | None:intergenic |
| GCATCGAATAAGGTGCGATG+TGG | 0.714161 | 3_1:+69549731 | Msa0371400:three_prime_UTR |
| TACATATCTGATGAGCAGTG+GGG | 0.771154 | 3_1:+69549635 | Msa0371400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTGATTTTATTATATATT+AGG | + | chr3_1:69546978-69546997 | Msa0371400:intron | 10.0% |
| !! | ACAAATTAATAAACTATAAA+CGG | - | chr3_1:69547803-69547822 | None:intergenic | 10.0% |
| !!! | AATTTTCTTATTGTATAAAT+CGG | + | chr3_1:69547996-69548015 | Msa0371400:intron | 10.0% |
| !! | ATAATATTATCATTATAGCA+TGG | + | chr3_1:69545752-69545771 | Msa0371400:five_prime_UTR | 15.0% |
| !! | AAAAAAGAAAAAAAGAAGTA+AGG | - | chr3_1:69546679-69546698 | None:intergenic | 15.0% |
| !!! | ACAATTCAATATCTAAAATT+TGG | + | chr3_1:69548764-69548783 | Msa0371400:intron | 15.0% |
| !!! | CAATTCAATATCTAAAATTT+GGG | + | chr3_1:69548765-69548784 | Msa0371400:intron | 15.0% |
| !!! | TTGATTTTTTTTCTAACTAA+TGG | + | chr3_1:69549318-69549337 | Msa0371400:intron | 15.0% |
| !!! | TTCTTTCTTTTTTCAAAGAT+TGG | - | chr3_1:69545790-69545809 | None:intergenic | 20.0% |
| !! | AAAAAAAACCAGAAACATTA+AGG | - | chr3_1:69545976-69545995 | None:intergenic | 20.0% |
| !!! | TTCAATTTCATGGATTATTT+TGG | - | chr3_1:69546399-69546418 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTTTTGCTTACT+TGG | + | chr3_1:69546686-69546705 | Msa0371400:intron | 20.0% |
| !!! | CAAATGATTTTGTTCATTAA+TGG | + | chr3_1:69547317-69547336 | Msa0371400:intron | 20.0% |
| !! | ACATGTATTATTGATGAAAT+GGG | - | chr3_1:69547947-69547966 | None:intergenic | 20.0% |
| !! | AACATGTATTATTGATGAAA+TGG | - | chr3_1:69547948-69547967 | None:intergenic | 20.0% |
| !! | AAGTTTATTCACAAATTCTA+CGG | - | chr3_1:69548152-69548171 | None:intergenic | 20.0% |
| !! | AAAAATCTTATGAGAGTAAA+TGG | - | chr3_1:69548402-69548421 | None:intergenic | 20.0% |
| !!! | ATTTACTCTCATAAGATTTT+TGG | + | chr3_1:69548401-69548420 | Msa0371400:intron | 20.0% |
| !!! | ACTACTATATGTTTTCATTT+TGG | - | chr3_1:69548600-69548619 | None:intergenic | 20.0% |
| !!! | CTTAATGTTTTTAAATTGCA+CGG | - | chr3_1:69548711-69548730 | None:intergenic | 20.0% |
| !!! | TTTTAGATATTGAATTGTCT+TGG | - | chr3_1:69548762-69548781 | None:intergenic | 20.0% |
| !!! | AGTATTGAATTTTATCTCAA+CGG | + | chr3_1:69548809-69548828 | Msa0371400:CDS | 20.0% |
| !! | TCACATTTGAAAATATTAGA+GGG | - | chr3_1:69549527-69549546 | None:intergenic | 20.0% |
| !! | TTCACATTTGAAAATATTAG+AGG | - | chr3_1:69549528-69549547 | None:intergenic | 20.0% |
| !! | AAATTTATCATCACTTTACA+TGG | - | chr3_1:69549696-69549715 | None:intergenic | 20.0% |
| !! | AACTTAAGATAACAATAACT+TGG | - | chr3_1:69549763-69549782 | None:intergenic | 20.0% |
| !!! | TTATTGTTATCTTAAGTTGT+TGG | + | chr3_1:69549765-69549784 | Msa0371400:three_prime_UTR | 20.0% |
| ! | AGTAGACAATTATTCATAGA+TGG | + | chr3_1:69545875-69545894 | Msa0371400:CDS | 25.0% |
| ! | TTATAACTACTTCTAAGTTG+TGG | + | chr3_1:69546020-69546039 | Msa0371400:intron | 25.0% |
| !!! | TTCTATTTTTGCTCTTGATA+TGG | + | chr3_1:69546228-69546247 | Msa0371400:intron | 25.0% |
| !! | ATCTACGATTTTCAATTTCA+TGG | - | chr3_1:69546409-69546428 | None:intergenic | 25.0% |
| ! | ATTTCAGTAACTAAAACTGT+TGG | + | chr3_1:69546450-69546469 | Msa0371400:intron | 25.0% |
| ! | TTTCAGTAACTAAAACTGTT+GGG | + | chr3_1:69546451-69546470 | Msa0371400:intron | 25.0% |
| !! | GTCTTATCGTTTACAATTTT+AGG | + | chr3_1:69547153-69547172 | Msa0371400:intron | 25.0% |
| ! | GTAACAATATTAAAAACACC+AGG | - | chr3_1:69547224-69547243 | None:intergenic | 25.0% |
| !!! | GGTGTTTTTAATATTGTTAC+CGG | + | chr3_1:69547224-69547243 | Msa0371400:CDS | 25.0% |
| ! | TTTAATATTGTTACCGGATT+AGG | + | chr3_1:69547230-69547249 | Msa0371400:CDS | 25.0% |
| ! | CAAATTAGACATATTTGAGA+AGG | - | chr3_1:69547677-69547696 | None:intergenic | 25.0% |
| ! | TCTCAAATATGTCTAATTTG+TGG | + | chr3_1:69547677-69547696 | Msa0371400:intron | 25.0% |
| !! | TTTCTTGCAATGTCAATTTT+TGG | + | chr3_1:69547727-69547746 | Msa0371400:intron | 25.0% |
| ! | ATTCAGCAACTGTTTAATAA+CGG | - | chr3_1:69547829-69547848 | None:intergenic | 25.0% |
| ! | TTAAACTTACATGCACAATA+AGG | - | chr3_1:69547907-69547926 | None:intergenic | 25.0% |
| ! | CATGTATTATTGATGAAATG+GGG | - | chr3_1:69547946-69547965 | None:intergenic | 25.0% |
| ! | TTTCTTATTGTATAAATCGG+AGG | + | chr3_1:69547999-69548018 | Msa0371400:intron | 25.0% |
| ! | TTCTTATTGTATAAATCGGA+GGG | + | chr3_1:69548000-69548019 | Msa0371400:intron | 25.0% |
| ! | TAAAACACTTATACTGTTTC+AGG | + | chr3_1:69548117-69548136 | Msa0371400:intron | 25.0% |
| ! | TTGTGAATAAACTTGTGAAA+TGG | + | chr3_1:69548158-69548177 | Msa0371400:CDS | 25.0% |
| ! | TGTGAATAAACTTGTGAAAT+GGG | + | chr3_1:69548159-69548178 | Msa0371400:CDS | 25.0% |
| ! | GGCTGAAAATATCAAAATTT+CGG | + | chr3_1:69548180-69548199 | Msa0371400:CDS | 25.0% |
| ! | TAAAGTCATGCATTAGTTAT+TGG | + | chr3_1:69548317-69548336 | Msa0371400:intron | 25.0% |
| ! | TTATCGTATCTATATGCAAA+AGG | + | chr3_1:69548446-69548465 | Msa0371400:intron | 25.0% |
| !! | AAAAGGAGGTTTTTAATCAA+TGG | + | chr3_1:69548463-69548482 | Msa0371400:intron | 25.0% |
| !!! | TTTAATCAATGGCTTTAGTT+TGG | + | chr3_1:69548474-69548493 | Msa0371400:intron | 25.0% |
| !! | TCTTTTATGATAGTATATCC+TGG | - | chr3_1:69549284-69549303 | None:intergenic | 25.0% |
| !! | ACTTATATTGATTATTCTGC+AGG | + | chr3_1:69549348-69549367 | Msa0371400:intron | 25.0% |
| !!! | GAGATTTTAAGAAACAAGAT+TGG | - | chr3_1:69549486-69549505 | None:intergenic | 25.0% |
| ! | AATATTAGAGGGAGAATTAA+AGG | - | chr3_1:69549516-69549535 | None:intergenic | 25.0% |
| !!! | TAAATTTGATTTCTGAAGTC+TGG | + | chr3_1:69549709-69549728 | Msa0371400:three_prime_UTR | 25.0% |
| AAGAAAGAAACGTATACACA+AGG | + | chr3_1:69545801-69545820 | Msa0371400:five_prime_UTR | 30.0% | |
| AATTATTCATAGATGGAGAG+TGG | + | chr3_1:69545882-69545901 | Msa0371400:CDS | 30.0% | |
| ! | TTGCTCTTGATATGGATTAA+AGG | + | chr3_1:69546236-69546255 | Msa0371400:intron | 30.0% |
| ! | TGCTCTTGATATGGATTAAA+GGG | + | chr3_1:69546237-69546256 | Msa0371400:intron | 30.0% |
| GTGAGAATTGGAAAAGAAAA+AGG | - | chr3_1:69546542-69546561 | None:intergenic | 30.0% | |
| ACTGAGAAAAAGAATGAACT+AGG | + | chr3_1:69546567-69546586 | Msa0371400:CDS | 30.0% | |
| AAGCTTGAATCAATAGATTG+TGG | + | chr3_1:69546591-69546610 | Msa0371400:CDS | 30.0% | |
| TCTGGTAATTATTATTCGAC+TGG | + | chr3_1:69546641-69546660 | Msa0371400:intron | 30.0% | |
| !!! | TAGTTGTTTTGAGTACTATG+CGG | + | chr3_1:69546745-69546764 | Msa0371400:CDS | 30.0% |
| ATTAATGCAACAACACCAAT+AGG | - | chr3_1:69546854-69546873 | None:intergenic | 30.0% | |
| TTGTTGCATTAATTACTCCA+TGG | + | chr3_1:69546861-69546880 | Msa0371400:CDS | 30.0% | |
| TGAAGAAAAAGAAGATACCA+TGG | - | chr3_1:69546881-69546900 | None:intergenic | 30.0% | |
| !!! | TTACAATTTTAGGACCTGTT+TGG | + | chr3_1:69547163-69547182 | Msa0371400:intron | 30.0% |
| ACAATATTAAAAACACCAGG+AGG | - | chr3_1:69547221-69547240 | None:intergenic | 30.0% | |
| AGTTCAAACCTTATCAACAT+CGG | - | chr3_1:69547288-69547307 | None:intergenic | 30.0% | |
| AACTATAAGAAGCTAGATCT+TGG | + | chr3_1:69547345-69547364 | Msa0371400:intron | 30.0% | |
| ATTCGATAGATTTCCTTTAC+CGG | + | chr3_1:69547441-69547460 | Msa0371400:intron | 30.0% | |
| ACATCCTCAAAAACAACTAT+CGG | - | chr3_1:69547631-69547650 | None:intergenic | 30.0% | |
| GTTATTAAACAGTTGCTGAA+TGG | + | chr3_1:69547828-69547847 | Msa0371400:intron | 30.0% | |
| ! | CCAATAATAGACTTGGTAAA+AGG | - | chr3_1:69548069-69548088 | None:intergenic | 30.0% |
| ! | CCTTTTACCAAGTCTATTAT+TGG | + | chr3_1:69548066-69548085 | Msa0371400:intron | 30.0% |
| ATCAAAGCCAATAATAGACT+TGG | - | chr3_1:69548076-69548095 | None:intergenic | 30.0% | |
| TATCAAAATTTCGGATCCAT+TGG | + | chr3_1:69548189-69548208 | Msa0371400:CDS | 30.0% | |
| TTATGAGAGTAAATGGAACA+AGG | - | chr3_1:69548395-69548414 | None:intergenic | 30.0% | |
| TATTGAATTGTCTTGGTTCA+AGG | - | chr3_1:69548755-69548774 | None:intergenic | 30.0% | |
| TTCAATGCAGCATTTAAAGA+AGG | + | chr3_1:69548956-69548975 | Msa0371400:intron | 30.0% | |
| TCAATGCAGCATTTAAAGAA+GGG | + | chr3_1:69548957-69548976 | Msa0371400:intron | 30.0% | |
| ! | ATTTGGAGAGAAGAAGTTTT+TGG | + | chr3_1:69549029-69549048 | Msa0371400:CDS | 30.0% |
| AATTTGGTATTTCACAGCTA+TGG | + | chr3_1:69549192-69549211 | Msa0371400:intron | 30.0% | |
| !!! | AGGGAGAATTAAAGGTATTT+TGG | - | chr3_1:69549508-69549527 | None:intergenic | 30.0% |
| !!! | TTGTTGTTGTTTTGTCATTC+AGG | + | chr3_1:69549573-69549592 | Msa0371400:intron | 30.0% |
| !!! | TGTTGTTGTTTTGTCATTCA+GGG | + | chr3_1:69549574-69549593 | Msa0371400:intron | 30.0% |
| !! | TTAACTATCACAGCTTTGAA+GGG | - | chr3_1:69549673-69549692 | None:intergenic | 30.0% |
| TAACATCAATGAAAGCAACA+TGG | - | chr3_1:69549849-69549868 | None:intergenic | 30.0% | |
| AAGCTCCTATACTCAACAAA+AGG | + | chr3_1:69545906-69545925 | Msa0371400:CDS | 35.0% | |
| ! | GGAATCCTTTTGTTGAGTAT+AGG | - | chr3_1:69545914-69545933 | None:intergenic | 35.0% |
| ! | CCTATGATATTTTCAGTGGA+GGG | - | chr3_1:69545947-69545966 | None:intergenic | 35.0% |
| ! | ACCTATGATATTTTCAGTGG+AGG | - | chr3_1:69545948-69545967 | None:intergenic | 35.0% |
| ! | CGTACCTATGATATTTTCAG+TGG | - | chr3_1:69545951-69545970 | None:intergenic | 35.0% |
| AAGTTGTGGCATTATGTGAA+TGG | + | chr3_1:69546034-69546053 | Msa0371400:intron | 35.0% | |
| !! | TCTACCTTTGTTTCTGGAAA+TGG | - | chr3_1:69546135-69546154 | None:intergenic | 35.0% |
| ! | GAAATGAGTGTTGCACAATT+TGG | + | chr3_1:69546355-69546374 | Msa0371400:intron | 35.0% |
| GTTACTGAAATTGTCTCGAA+TGG | - | chr3_1:69546441-69546460 | None:intergenic | 35.0% | |
| TCTCAGTTATCTGTGAGAAT+TGG | - | chr3_1:69546554-69546573 | None:intergenic | 35.0% | |
| CTGCTGTGGTTTGATTATAT+AGG | + | chr3_1:69546712-69546731 | Msa0371400:intron | 35.0% | |
| !!! | AGTTGTTTTGAGTACTATGC+GGG | + | chr3_1:69546746-69546765 | Msa0371400:CDS | 35.0% |
| !! | CTTAAAGGTATCCATAGGAA+GGG | - | chr3_1:69546813-69546832 | None:intergenic | 35.0% |
| !! | TCTTAAAGGTATCCATAGGA+AGG | - | chr3_1:69546814-69546833 | None:intergenic | 35.0% |
| ATCTGCTTTGATGAGCTATT+TGG | + | chr3_1:69546936-69546955 | Msa0371400:intron | 35.0% | |
| TAGGAACTATCCTCTCTTAA+TGG | + | chr3_1:69546997-69547016 | Msa0371400:intron | 35.0% | |
| AATATTGAAGCCGTCTGAAT+TGG | + | chr3_1:69547063-69547082 | Msa0371400:CDS | 35.0% | |
| TATTAAAAACACCAGGAGGA+AGG | - | chr3_1:69547217-69547236 | None:intergenic | 35.0% | |
| GTTCAAACCTTATCAACATC+GGG | - | chr3_1:69547287-69547306 | None:intergenic | 35.0% | |
| CATCCTCAAAAACAACTATC+GGG | - | chr3_1:69547630-69547649 | None:intergenic | 35.0% | |
| !! | TTTTTGGTATCCGTAACCTA+TGG | + | chr3_1:69547743-69547762 | Msa0371400:intron | 35.0% |
| !! | CTTCTATTTCTACCAGTCTA+AGG | - | chr3_1:69548035-69548054 | None:intergenic | 35.0% |
| TGGTAAGTTAAGCACATATC+TGG | - | chr3_1:69548289-69548308 | None:intergenic | 35.0% | |
| TGCATGACTTTAACAACAAG+TGG | - | chr3_1:69548309-69548328 | None:intergenic | 35.0% | |
| AGTCATGCATTAGTTATTGG+TGG | + | chr3_1:69548320-69548339 | Msa0371400:intron | 35.0% | |
| ! | TTGGTTTAAGACGTTGTTTG+AGG | + | chr3_1:69548420-69548439 | Msa0371400:intron | 35.0% |
| TCGTATCTATATGCAAAAGG+AGG | + | chr3_1:69548449-69548468 | Msa0371400:intron | 35.0% | |
| ! | CATGCTAGCAGTAGATTTTT+CGG | - | chr3_1:69548525-69548544 | None:intergenic | 35.0% |
| ATGGACTTACTGTATTTGTC+TGG | + | chr3_1:69548542-69548561 | Msa0371400:intron | 35.0% | |
| ! | TTGGATAACAGAGAAAGCAT+TGG | - | chr3_1:69548581-69548600 | None:intergenic | 35.0% |
| TTTGCGTAGTTACCATGATT+TGG | + | chr3_1:69548673-69548692 | Msa0371400:intron | 35.0% | |
| TCAGAAAGAAAGCCAAATCA+TGG | - | chr3_1:69548688-69548707 | None:intergenic | 35.0% | |
| !! | AATGTTTTTACAGAGAGCAC+AGG | - | chr3_1:69549056-69549075 | None:intergenic | 35.0% |
| TGTAAAAACATTTAGCACCG+AGG | + | chr3_1:69549064-69549083 | Msa0371400:CDS | 35.0% | |
| !!! | ACCACTTTTTTCTTCACTTG+TGG | + | chr3_1:69549151-69549170 | Msa0371400:intron | 35.0% |
| TCCACAAGTGAAGAAAAAAG+TGG | - | chr3_1:69549155-69549174 | None:intergenic | 35.0% | |
| TGATGTCAAAGCCACAAATT+TGG | + | chr3_1:69549176-69549195 | Msa0371400:intron | 35.0% | |
| GCTGTGAAATACCAAATTTG+TGG | - | chr3_1:69549190-69549209 | None:intergenic | 35.0% | |
| !!! | GTTGTTGTTTTGTCATTCAG+GGG | + | chr3_1:69549575-69549594 | Msa0371400:intron | 35.0% |
| ATACATATCTGATGAGCAGT+GGG | + | chr3_1:69549634-69549653 | Msa0371400:CDS | 35.0% | |
| !! | TAACTATCACAGCTTTGAAG+GGG | - | chr3_1:69549672-69549691 | None:intergenic | 35.0% |
| ! | GTTAACTATCACAGCTTTGA+AGG | - | chr3_1:69549674-69549693 | None:intergenic | 35.0% |
| TCAGTGGAGGGATTGATTAT+TGG | - | chr3_1:69545935-69545954 | None:intergenic | 40.0% | |
| CCCTCCACTGAAAATATCAT+AGG | + | chr3_1:69545944-69545963 | Msa0371400:CDS | 40.0% | |
| GGTACGTACCTTAATGTTTC+TGG | + | chr3_1:69545965-69545984 | Msa0371400:intron | 40.0% | |
| TGAATGGTTGACACAAATGC+AGG | + | chr3_1:69546050-69546069 | Msa0371400:intron | 40.0% | |
| GAATGGTTGACACAAATGCA+GGG | + | chr3_1:69546051-69546070 | Msa0371400:intron | 40.0% | |
| AATGGTTGACACAAATGCAG+GGG | + | chr3_1:69546052-69546071 | Msa0371400:intron | 40.0% | |
| ! | TTTTAGCAGCATCAACAGCA+AGG | - | chr3_1:69546109-69546128 | None:intergenic | 40.0% |
| AGAGCCATTTCCAGAAACAA+AGG | + | chr3_1:69546128-69546147 | Msa0371400:CDS | 40.0% | |
| ! | CCAATCTCTACCTTTGTTTC+TGG | - | chr3_1:69546141-69546160 | None:intergenic | 40.0% |
| CCAGAAACAAAGGTAGAGAT+TGG | + | chr3_1:69546138-69546157 | Msa0371400:CDS | 40.0% | |
| TGTATGTCTTGAGACCTGAT+TGG | + | chr3_1:69546512-69546531 | Msa0371400:intron | 40.0% | |
| AAGAAAAAGGACAGCCAATC+AGG | - | chr3_1:69546529-69546548 | None:intergenic | 40.0% | |
| AATAGATTGTGGAAAGCCAC+TGG | + | chr3_1:69546602-69546621 | Msa0371400:CDS | 40.0% | |
| !!! | GTTGTTTTGAGTACTATGCG+GGG | + | chr3_1:69546747-69546766 | Msa0371400:CDS | 40.0% |
| !! | TGGCTCTTAAAGGTATCCAT+AGG | - | chr3_1:69546818-69546837 | None:intergenic | 40.0% |
| CTTCAGAACATGGCTCTTAA+AGG | - | chr3_1:69546828-69546847 | None:intergenic | 40.0% | |
| ! | CTTTAAGAGCCATGTTCTGA+AGG | + | chr3_1:69546826-69546845 | Msa0371400:CDS | 40.0% |
| TGCTTTGATGAGCTATTTGG+TGG | + | chr3_1:69546939-69546958 | Msa0371400:intron | 40.0% | |
| TACACAGATGCCAATTCAGA+CGG | - | chr3_1:69547076-69547095 | None:intergenic | 40.0% | |
| !!! | TTTTAGGACCTGTTTGGAGT+TGG | + | chr3_1:69547169-69547188 | Msa0371400:intron | 40.0% |
| ! | TTTAGGACCTGTTTGGAGTT+GGG | + | chr3_1:69547170-69547189 | Msa0371400:intron | 40.0% |
| GGCGAAATATGCAAAGAAGT+TGG | + | chr3_1:69547191-69547210 | Msa0371400:CDS | 40.0% | |
| AACCTTATCAACATCGGGAT+GGG | - | chr3_1:69547282-69547301 | None:intergenic | 40.0% | |
| AAACCTTATCAACATCGGGA+TGG | - | chr3_1:69547283-69547302 | None:intergenic | 40.0% | |
| CTATCGAATAATGCGCACAA+TGG | - | chr3_1:69547430-69547449 | None:intergenic | 40.0% | |
| TGAGGATGTTGACCTTGATA+AGG | + | chr3_1:69547642-69547661 | Msa0371400:CDS | 40.0% | |
| GAGGATGTTGACCTTGATAA+GGG | + | chr3_1:69547643-69547662 | Msa0371400:CDS | 40.0% | |
| ATGTTGACCTTGATAAGGGT+TGG | + | chr3_1:69547647-69547666 | Msa0371400:intron | 40.0% | |
| ! | CGGCATATGAGCAAATGTTT+TGG | - | chr3_1:69547783-69547802 | None:intergenic | 40.0% |
| TTTGGCTGCTTCTTTACGAA+TGG | + | chr3_1:69547857-69547876 | Msa0371400:CDS | 40.0% | |
| TCTACCAGTCTAAGGAAATC+TGG | - | chr3_1:69548027-69548046 | None:intergenic | 40.0% | |
| ATTTCGGATCCATTGGAAGA+AGG | + | chr3_1:69548196-69548215 | Msa0371400:CDS | 40.0% | |
| ATTGGTGGAGAGATTGAAAG+CGG | + | chr3_1:69548335-69548354 | Msa0371400:intron | 40.0% | |
| CGAAAAATCTACTGCTAGCA+TGG | + | chr3_1:69548523-69548542 | Msa0371400:intron | 40.0% | |
| !! | GAAGGTGCAACAATTTTGAC+TGG | + | chr3_1:69548840-69548859 | Msa0371400:CDS | 40.0% |
| !!! | GTGCAACAATTTTGACTGGT+GGG | + | chr3_1:69548844-69548863 | Msa0371400:CDS | 40.0% |
| ! | GAGGGTATAATCATACCTCT+GGG | - | chr3_1:69548875-69548894 | None:intergenic | 40.0% |
| TGACTACCTCGATGCAAATT+TGG | + | chr3_1:69549012-69549031 | Msa0371400:CDS | 40.0% | |
| TTCTCTCCAAATTTGCATCG+AGG | - | chr3_1:69549021-69549040 | None:intergenic | 40.0% | |
| TAGATCGATTGCTTCTTCCT+CGG | - | chr3_1:69549084-69549103 | None:intergenic | 40.0% | |
| GTATTTCACAGCTATGGCTT+GGG | + | chr3_1:69549198-69549217 | Msa0371400:intron | 40.0% | |
| TATTTCACAGCTATGGCTTG+GGG | + | chr3_1:69549199-69549218 | Msa0371400:intron | 40.0% | |
| ! | ATCTAAGGTGAGAATAGTCC+AGG | + | chr3_1:69549263-69549282 | Msa0371400:intron | 40.0% |
| CTCTTCAAGCTGGAATTGTA+TGG | + | chr3_1:69549371-69549390 | Msa0371400:CDS | 40.0% | |
| AAGCTTCATTCAAGCTCCAT+GGG | + | chr3_1:69549411-69549430 | Msa0371400:CDS | 40.0% | |
| GATACATATCTGATGAGCAG+TGG | + | chr3_1:69549633-69549652 | Msa0371400:CDS | 40.0% | |
| TACATATCTGATGAGCAGTG+GGG | + | chr3_1:69549635-69549654 | Msa0371400:CDS | 40.0% | |
| GCGTAACAGAGAGGAGAAAA+TGG | + | chr3_1:69545838-69545857 | Msa0371400:exon | 45.0% | |
| GGATATACCAGCTGCTACTA+AGG | + | chr3_1:69546073-69546092 | Msa0371400:CDS | 45.0% | |
| ACATCTTCCTTAGTAGCAGC+TGG | - | chr3_1:69546083-69546102 | None:intergenic | 45.0% | |
| TCTTCGAGCAATTGCTGCAA+AGG | + | chr3_1:69546193-69546212 | Msa0371400:CDS | 45.0% | |
| AGGGTTGGATGCAAAGCAAA+AGG | + | chr3_1:69546778-69546797 | Msa0371400:CDS | 45.0% | |
| GTATCCATAGGAAGGGATAC+AGG | - | chr3_1:69546806-69546825 | None:intergenic | 45.0% | |
| CAATAGGCTCCTTCAGAACA+TGG | - | chr3_1:69546838-69546857 | None:intergenic | 45.0% | |
| !! | CATGTTCTGAAGGAGCCTAT+TGG | + | chr3_1:69546836-69546855 | Msa0371400:CDS | 45.0% |
| ATCCTCTCTTAATGGCGACT+TGG | + | chr3_1:69547005-69547024 | Msa0371400:CDS | 45.0% | |
| TTCCAAGTCGCCATTAAGAG+AGG | - | chr3_1:69547010-69547029 | None:intergenic | 45.0% | |
| TATTTCGCCCAACTCCAAAC+AGG | - | chr3_1:69547180-69547199 | None:intergenic | 45.0% | |
| !! | CCAAAAAAGCACCAGCTTCA+TGG | - | chr3_1:69547256-69547275 | None:intergenic | 45.0% |
| !!! | CCATGAAGCTGGTGCTTTTT+TGG | + | chr3_1:69547253-69547272 | Msa0371400:CDS | 45.0% |
| ATCCCATCCCGATGTTGATA+AGG | + | chr3_1:69547277-69547296 | Msa0371400:CDS | 45.0% | |
| GAGCAAGATTATGACAGCTG+CGG | + | chr3_1:69547479-69547498 | Msa0371400:CDS | 45.0% | |
| !!! | GAGCCCGATAGTTGTTTTTG+AGG | + | chr3_1:69547624-69547643 | Msa0371400:CDS | 45.0% |
| ATCCGTAACCTATGGCGTAA+TGG | + | chr3_1:69547751-69547770 | Msa0371400:intron | 45.0% | |
| CACCATTACGCCATAGGTTA+CGG | - | chr3_1:69547756-69547775 | None:intergenic | 45.0% | |
| GTTGCTGAATGGACCATCTT+TGG | + | chr3_1:69547839-69547858 | Msa0371400:intron | 45.0% | |
| CGTAAAGAAGCAGCCAAAGA+TGG | - | chr3_1:69547855-69547874 | None:intergenic | 45.0% | |
| ATCCATTGGAAGAAGGTTGC+AGG | + | chr3_1:69548203-69548222 | Msa0371400:CDS | 45.0% | |
| CCTGTGCTTCACTGACAATA+GGG | - | chr3_1:69548234-69548253 | None:intergenic | 45.0% | |
| ACCTGTGCTTCACTGACAAT+AGG | - | chr3_1:69548235-69548254 | None:intergenic | 45.0% | |
| ACTACACACTGCATGCAACT+TGG | - | chr3_1:69548643-69548662 | None:intergenic | 45.0% | |
| ATCTCAACGGCTAAGAGTGA+AGG | + | chr3_1:69548822-69548841 | Msa0371400:CDS | 45.0% | |
| !!! | GGTGCAACAATTTTGACTGG+TGG | + | chr3_1:69548843-69548862 | Msa0371400:CDS | 45.0% |
| ! | CGAGGGTATAATCATACCTC+TGG | - | chr3_1:69548876-69548895 | None:intergenic | 45.0% |
| TTGCATCGAGGTAGTCACAT+CGG | - | chr3_1:69549009-69549028 | None:intergenic | 45.0% | |
| GGTATTTCACAGCTATGGCT+TGG | + | chr3_1:69549197-69549216 | Msa0371400:intron | 45.0% | |
| AAGATGTGAGCGCGTATCTA+AGG | + | chr3_1:69549248-69549267 | Msa0371400:CDS | 45.0% | |
| CATGGAGCTTGAATGAAGCT+TGG | - | chr3_1:69549412-69549431 | None:intergenic | 45.0% | |
| CAAGCTTCATTCAAGCTCCA+TGG | + | chr3_1:69549410-69549429 | Msa0371400:CDS | 45.0% | |
| AGCTTCATTCAAGCTCCATG+GGG | + | chr3_1:69549412-69549431 | Msa0371400:CDS | 45.0% | |
| ! | GGCATTAAACGTAGCGGTTT+TGG | + | chr3_1:69549436-69549455 | Msa0371400:CDS | 45.0% |
| TTGGTCGCGAATTAGGAGAA+TGG | + | chr3_1:69549455-69549474 | Msa0371400:CDS | 45.0% | |
| ! | CTGAAGTCTGGCATCGAATA+AGG | + | chr3_1:69549721-69549740 | Msa0371400:three_prime_UTR | 45.0% |
| ! | GCTAAGAGTGCGTAACAGAG+AGG | + | chr3_1:69545829-69545848 | Msa0371400:five_prime_UTR | 50.0% |
| ! | AGAGATTGGTCCACTGCTTC+TGG | + | chr3_1:69546152-69546171 | Msa0371400:CDS | 50.0% |
| ACGAACAGAACCAGAAGCAG+TGG | - | chr3_1:69546165-69546184 | None:intergenic | 50.0% | |
| TGCTTACTTGGACTCTGCTG+TGG | + | chr3_1:69546698-69546717 | Msa0371400:intron | 50.0% | |
| TTGGAAAATCGCTCCAGCTC+TGG | + | chr3_1:69547024-69547043 | Msa0371400:CDS | 50.0% | |
| !! | AAAGAAGTTGGCCTTCCTCC+TGG | + | chr3_1:69547203-69547222 | Msa0371400:CDS | 50.0% |
| ACCAGCTTCATGGCCTAATC+CGG | - | chr3_1:69547246-69547265 | None:intergenic | 50.0% | |
| AGTTGCAGAGCTACCGGTAA+AGG | - | chr3_1:69547457-69547476 | None:intergenic | 50.0% | |
| ! | TTTACCGGTAGCTCTGCAAC+TGG | + | chr3_1:69547456-69547475 | Msa0371400:CDS | 50.0% |
| ! | TTACCGGTAGCTCTGCAACT+GGG | + | chr3_1:69547457-69547476 | Msa0371400:CDS | 50.0% |
| CAGCCTGTTTCACTAGAGCT+TGG | + | chr3_1:69547595-69547614 | Msa0371400:intron | 50.0% | |
| ! | CCACCAAGCTCTAGTGAAAC+AGG | - | chr3_1:69547601-69547620 | None:intergenic | 50.0% |
| CCTGTTTCACTAGAGCTTGG+TGG | + | chr3_1:69547598-69547617 | Msa0371400:CDS | 50.0% | |
| AGGCACACCAACCCTTATCA+AGG | - | chr3_1:69547657-69547676 | None:intergenic | 50.0% | |
| GGATCACACCATTACGCCAT+AGG | - | chr3_1:69547762-69547781 | None:intergenic | 50.0% | |
| GGGTCCAGATTTCCTTAGAC+TGG | + | chr3_1:69548020-69548039 | Msa0371400:intron | 50.0% | |
| AGCCTGCAACCTTCTTCCAA+TGG | - | chr3_1:69548208-69548227 | None:intergenic | 50.0% | |
| TTGGAAGAAGGTTGCAGGCT+AGG | + | chr3_1:69548208-69548227 | Msa0371400:CDS | 50.0% | |
| CCCTATTGTCAGTGAAGCAC+AGG | + | chr3_1:69548231-69548250 | Msa0371400:CDS | 50.0% | |
| TACCCTCGAATACGTGTGCT+CGG | + | chr3_1:69548888-69548907 | Msa0371400:intron | 50.0% | |
| AACCGAGCACACGTATTCGA+GGG | - | chr3_1:69548893-69548912 | None:intergenic | 50.0% | |
| ! | GTCACATCGGTTACGATGGT+TGG | - | chr3_1:69548996-69549015 | None:intergenic | 50.0% |
| ! | GGTAGTCACATCGGTTACGA+TGG | - | chr3_1:69549000-69549019 | None:intergenic | 50.0% |
| ATTCTGCAGGCTCTTCAAGC+TGG | + | chr3_1:69549361-69549380 | Msa0371400:intron | 50.0% | |
| GCTTCATTCAAGCTCCATGG+GGG | + | chr3_1:69549413-69549432 | Msa0371400:CDS | 50.0% | |
| CTTCATTCAAGCTCCATGGG+GGG | + | chr3_1:69549414-69549433 | Msa0371400:CDS | 50.0% | |
| TTCATTCAAGCTCCATGGGG+GGG | + | chr3_1:69549415-69549434 | Msa0371400:CDS | 50.0% | |
| !! | AGCGGTTTTGGTCGCGAATT+AGG | + | chr3_1:69549448-69549467 | Msa0371400:CDS | 50.0% |
| GCATCGAATAAGGTGCGATG+TGG | + | chr3_1:69549731-69549750 | Msa0371400:three_prime_UTR | 50.0% | |
| !! | GCTTCTGGTTCTGTTCGTGC+TGG | + | chr3_1:69546167-69546186 | Msa0371400:CDS | 55.0% |
| ! | GCCACTGGATGAAGCACTAG+CGG | + | chr3_1:69546617-69546636 | Msa0371400:CDS | 55.0% |
| TCCGCTAGTGCTTCATCCAG+TGG | - | chr3_1:69546621-69546640 | None:intergenic | 55.0% | |
| ! | GGATGAAGCACTAGCGGATC+TGG | + | chr3_1:69546623-69546642 | Msa0371400:CDS | 55.0% |
| !! | TACTATGCGGGGCTTGCTGA+AGG | + | chr3_1:69546758-69546777 | Msa0371400:CDS | 55.0% |
| !! | ACTATGCGGGGCTTGCTGAA+GGG | + | chr3_1:69546759-69546778 | Msa0371400:CDS | 55.0% |
| GGCTCCTGTATCCCTTCCTA+TGG | + | chr3_1:69546799-69546818 | Msa0371400:CDS | 55.0% | |
| ! | ACCGGATTAGGCCATGAAGC+TGG | + | chr3_1:69547242-69547261 | Msa0371400:CDS | 55.0% |
| AGCTGCGGCACAGCTAATCA+AGG | + | chr3_1:69547494-69547513 | Msa0371400:CDS | 55.0% | |
| GAACCGAGCACACGTATTCG+AGG | - | chr3_1:69548894-69548913 | None:intergenic | 55.0% | |
| CTACGTTTAATGCCCCCCCA+TGG | - | chr3_1:69549430-69549449 | None:intergenic | 55.0% | |
| !! | TGGGGGGGCATTAAACGTAG+CGG | + | chr3_1:69549430-69549449 | Msa0371400:CDS | 55.0% |
| TATCTGATGAGCAGTGGGGC+TGG | + | chr3_1:69549639-69549658 | Msa0371400:CDS | 55.0% | |
| GCTCCCAGTTGCAGAGCTAC+CGG | - | chr3_1:69547463-69547482 | None:intergenic | 60.0% | |
| !! | TGCGGGGCTTGCTGAAGGGT+TGG | + | chr3_1:69546763-69546782 | Msa0371400:CDS | 65.0% |
| ! | ATCGCTCCAGCTCTGGCTGC+TGG | + | chr3_1:69547031-69547050 | Msa0371400:CDS | 65.0% |
| GCACAACCAGCAGCCAGAGC+TGG | - | chr3_1:69547040-69547059 | None:intergenic | 65.0% | |
| ! | GACTGGTGGGCGTCGCCCAG+AGG | + | chr3_1:69548857-69548876 | Msa0371400:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 69545714 | 69549884 | 69545714 | ID=Msa0371400;Name=Msa0371400 |
| chr3_1 | mRNA | 69545714 | 69549884 | 69545714 | ID=Msa0371400-mRNA-1;Parent=Msa0371400;Name=Msa0371400-mRNA-1;_AED=0.10;_eAED=0.10;_QI=143|1|1|1|1|1|15|199|503 |
| chr3_1 | exon | 69545714 | 69545965 | 69545714 | ID=Msa0371400-mRNA-1:exon:14810;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69546072 | 69546214 | 69546072 | ID=Msa0371400-mRNA-1:exon:14811;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69546564 | 69546644 | 69546564 | ID=Msa0371400-mRNA-1:exon:14812;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69546734 | 69546882 | 69546734 | ID=Msa0371400-mRNA-1:exon:14813;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69547000 | 69547092 | 69547000 | ID=Msa0371400-mRNA-1:exon:14814;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69547175 | 69547298 | 69547175 | ID=Msa0371400-mRNA-1:exon:14815;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69547450 | 69547515 | 69547450 | ID=Msa0371400-mRNA-1:exon:14816;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69547598 | 69547664 | 69547598 | ID=Msa0371400-mRNA-1:exon:14817;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69547840 | 69547916 | 69547840 | ID=Msa0371400-mRNA-1:exon:14818;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69548139 | 69548252 | 69548139 | ID=Msa0371400-mRNA-1:exon:14819;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69548801 | 69548878 | 69548801 | ID=Msa0371400-mRNA-1:exon:14820;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69548966 | 69549117 | 69548966 | ID=Msa0371400-mRNA-1:exon:14821;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69549209 | 69549269 | 69549209 | ID=Msa0371400-mRNA-1:exon:14822;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69549370 | 69549476 | 69549370 | ID=Msa0371400-mRNA-1:exon:14823;Parent=Msa0371400-mRNA-1 |
| chr3_1 | exon | 69549595 | 69549884 | 69549595 | ID=Msa0371400-mRNA-1:exon:14824;Parent=Msa0371400-mRNA-1 |
| chr3_1 | five_prime_UTR | 69545714 | 69545856 | 69545714 | ID=Msa0371400-mRNA-1:five_prime_utr;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69545857 | 69545965 | 69545857 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69546072 | 69546214 | 69546072 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69546564 | 69546644 | 69546564 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69546734 | 69546882 | 69546734 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69547000 | 69547092 | 69547000 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69547175 | 69547298 | 69547175 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69547450 | 69547515 | 69547450 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69547598 | 69547664 | 69547598 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69547840 | 69547916 | 69547840 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69548139 | 69548252 | 69548139 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69548801 | 69548878 | 69548801 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69548966 | 69549117 | 69548966 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69549209 | 69549269 | 69549209 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69549370 | 69549476 | 69549370 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | CDS | 69549595 | 69549685 | 69549595 | ID=Msa0371400-mRNA-1:cds;Parent=Msa0371400-mRNA-1 |
| chr3_1 | three_prime_UTR | 69549686 | 69549884 | 69549686 | ID=Msa0371400-mRNA-1:three_prime_utr;Parent=Msa0371400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
