Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419600 | XP_013461050.1 | 98.012 | 503 | 10 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1011 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419600 | sp|Q8VWZ1|AADH1_PEA | 92.445 | 503 | 38 | 0 | 1 | 503 | 1 | 503 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419600 | A0A072UZ53 | 98.012 | 503 | 10 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1011 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0371400 | Msa0419600 | 0.975434 | 6.027778e-140 | -8.615850e-47 |
| Msa0419600 | Msa0465700 | 0.868906 | 4.609692e-66 | -8.615850e-47 |
| Msa0419600 | Msa0511700 | 0.867744 | 1.091573e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419600 | MtrunA17_Chr3g0118121 | 98.012 | 503 | 10 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1011 |
| Msa0419600 | MtrunA17_Chr3g0118081 | 92.445 | 503 | 38 | 0 | 1 | 503 | 31 | 533 | 0.0 | 936 |
| Msa0419600 | MtrunA17_Chr4g0059521 | 83.698 | 503 | 82 | 0 | 1 | 503 | 1 | 503 | 0.0 | 847 |
| Msa0419600 | MtrunA17_Chr8g0390631 | 41.379 | 493 | 278 | 5 | 4 | 494 | 10 | 493 | 1.31e-125 | 375 |
| Msa0419600 | MtrunA17_Chr6g0485301 | 41.988 | 493 | 275 | 5 | 4 | 494 | 18 | 501 | 5.71e-123 | 369 |
| Msa0419600 | MtrunA17_Chr6g0485311 | 40.974 | 493 | 280 | 5 | 4 | 494 | 16 | 499 | 6.89e-122 | 366 |
| Msa0419600 | MtrunA17_Chr8g0365221 | 39.148 | 493 | 287 | 6 | 5 | 494 | 58 | 540 | 3.67e-119 | 360 |
| Msa0419600 | MtrunA17_Chr8g0390651 | 39.474 | 494 | 286 | 6 | 4 | 494 | 19 | 502 | 3.75e-117 | 354 |
| Msa0419600 | MtrunA17_Chr2g0310091 | 40.042 | 477 | 276 | 3 | 9 | 485 | 63 | 529 | 9.93e-116 | 352 |
| Msa0419600 | MtrunA17_Chr4g0059221 | 39.673 | 489 | 282 | 6 | 9 | 494 | 65 | 543 | 2.52e-114 | 348 |
| Msa0419600 | MtrunA17_Chr3g0117861 | 38.809 | 487 | 285 | 6 | 11 | 494 | 65 | 541 | 3.70e-113 | 345 |
| Msa0419600 | MtrunA17_Chr4g0074171 | 34.322 | 472 | 281 | 11 | 9 | 470 | 17 | 469 | 2.93e-67 | 224 |
| Msa0419600 | MtrunA17_Chr1g0149961 | 33.617 | 470 | 283 | 11 | 11 | 470 | 19 | 469 | 1.34e-65 | 220 |
| Msa0419600 | MtrunA17_Chr2g0294411 | 28.747 | 487 | 325 | 8 | 23 | 499 | 64 | 538 | 1.36e-60 | 209 |
| Msa0419600 | MtrunA17_Chr2g0300801 | 29.607 | 483 | 307 | 12 | 11 | 480 | 25 | 487 | 1.11e-56 | 196 |
| Msa0419600 | MtrunA17_Chr2g0279751 | 29.979 | 477 | 301 | 10 | 25 | 487 | 32 | 489 | 5.45e-52 | 184 |
| Msa0419600 | MtrunA17_Chr4g0049641 | 28.184 | 479 | 323 | 9 | 25 | 495 | 59 | 524 | 7.18e-51 | 181 |
| Msa0419600 | MtrunA17_Chr3g0124811 | 29.665 | 418 | 278 | 8 | 74 | 485 | 40 | 447 | 7.71e-44 | 161 |
| Msa0419600 | MtrunA17_Chr8g0372381 | 29.930 | 431 | 288 | 9 | 60 | 485 | 17 | 438 | 3.06e-42 | 157 |
| Msa0419600 | MtrunA17_Chr8g0384741 | 30.211 | 427 | 276 | 10 | 68 | 485 | 85 | 498 | 5.74e-41 | 154 |
| Msa0419600 | MtrunA17_Chr1g0159811 | 30.769 | 338 | 219 | 7 | 130 | 462 | 95 | 422 | 5.23e-38 | 145 |
| Msa0419600 | MtrunA17_Chr2g0328781 | 27.292 | 480 | 299 | 16 | 46 | 500 | 12 | 466 | 3.33e-36 | 140 |
| Msa0419600 | MtrunA17_Chr4g0032441 | 28.222 | 450 | 303 | 10 | 60 | 500 | 13 | 451 | 2.00e-29 | 120 |
| Msa0419600 | MtrunA17_Chr4g0060261 | 26.557 | 305 | 190 | 11 | 144 | 429 | 187 | 476 | 7.99e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419600 | AT1G74920.1 | 77.246 | 501 | 114 | 0 | 1 | 501 | 1 | 501 | 0.0 | 843 |
| Msa0419600 | AT1G74920.2 | 76.248 | 501 | 114 | 1 | 1 | 501 | 1 | 496 | 0.0 | 828 |
| Msa0419600 | AT3G48170.1 | 75.547 | 503 | 123 | 0 | 1 | 503 | 1 | 503 | 0.0 | 820 |
| Msa0419600 | AT3G24503.1 | 43.238 | 488 | 267 | 5 | 9 | 494 | 21 | 500 | 2.28e-135 | 401 |
| Msa0419600 | AT3G48000.1 | 40.927 | 496 | 280 | 6 | 2 | 494 | 52 | 537 | 2.65e-123 | 371 |
| Msa0419600 | AT1G23800.1 | 38.945 | 493 | 288 | 6 | 5 | 494 | 51 | 533 | 1.90e-114 | 348 |
| Msa0419600 | AT1G79440.1 | 38.994 | 477 | 281 | 3 | 9 | 485 | 54 | 520 | 7.14e-107 | 329 |
| Msa0419600 | AT1G23800.2 | 38.988 | 336 | 194 | 5 | 5 | 337 | 51 | 378 | 3.28e-69 | 227 |
| Msa0419600 | AT3G66658.1 | 31.070 | 486 | 307 | 12 | 22 | 494 | 63 | 533 | 3.04e-65 | 221 |
| Msa0419600 | AT3G66658.2 | 31.070 | 486 | 307 | 12 | 22 | 494 | 63 | 533 | 7.32e-65 | 221 |
| Msa0419600 | AT2G24270.3 | 33.475 | 472 | 285 | 12 | 9 | 470 | 17 | 469 | 1.37e-64 | 218 |
| Msa0419600 | AT2G24270.1 | 33.475 | 472 | 285 | 12 | 9 | 470 | 17 | 469 | 1.37e-64 | 218 |
| Msa0419600 | AT2G24270.4 | 33.475 | 472 | 285 | 12 | 9 | 470 | 17 | 469 | 2.63e-64 | 217 |
| Msa0419600 | AT2G24270.2 | 33.475 | 472 | 285 | 12 | 9 | 470 | 57 | 509 | 2.92e-64 | 218 |
| Msa0419600 | AT1G54100.2 | 29.065 | 492 | 322 | 11 | 11 | 492 | 24 | 498 | 1.43e-56 | 196 |
| Msa0419600 | AT1G54100.1 | 29.065 | 492 | 322 | 11 | 11 | 492 | 24 | 498 | 1.43e-56 | 196 |
| Msa0419600 | AT2G14170.2 | 29.289 | 478 | 312 | 10 | 25 | 494 | 22 | 481 | 1.29e-53 | 188 |
| Msa0419600 | AT2G14170.1 | 29.289 | 478 | 312 | 10 | 25 | 494 | 131 | 590 | 7.54e-53 | 189 |
| Msa0419600 | AT2G14170.3 | 29.167 | 456 | 305 | 8 | 25 | 475 | 131 | 573 | 8.18e-51 | 183 |
| Msa0419600 | AT1G44170.3 | 31.025 | 361 | 234 | 7 | 130 | 485 | 28 | 378 | 1.03e-44 | 162 |
| Msa0419600 | AT1G44170.1 | 31.025 | 361 | 234 | 7 | 130 | 485 | 91 | 441 | 2.31e-44 | 163 |
| Msa0419600 | AT1G44170.2 | 31.025 | 361 | 234 | 7 | 130 | 485 | 91 | 441 | 2.31e-44 | 163 |
| Msa0419600 | AT4G36250.1 | 26.856 | 458 | 301 | 12 | 42 | 485 | 3 | 440 | 9.96e-35 | 136 |
| Msa0419600 | AT4G34240.4 | 29.466 | 431 | 285 | 10 | 61 | 485 | 72 | 489 | 1.93e-32 | 130 |
| Msa0419600 | AT4G34240.1 | 29.466 | 431 | 285 | 10 | 61 | 485 | 87 | 504 | 2.60e-32 | 130 |
| Msa0419600 | AT4G34240.3 | 30.812 | 357 | 230 | 9 | 136 | 485 | 16 | 362 | 2.85e-31 | 125 |
| Msa0419600 | AT4G34240.2 | 31.190 | 311 | 200 | 8 | 61 | 367 | 87 | 387 | 2.63e-20 | 93.2 |
Find 128 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATCTCTACCTTTGTTTC+TGG | 0.123105 | 3_2:-67733492 | None:intergenic |
| GGCATTAAACGTAGCGGTTT+TGG | 0.201802 | 3_2:+67736790 | Msa0419600:CDS |
| TTTAATATTGTTACCGGATT+AGG | 0.224280 | 3_2:+67734584 | Msa0419600:CDS |
| CTTCAGAACATGGCTCTTAA+AGG | 0.270910 | 3_2:-67734179 | None:intergenic |
| AGAGATTGGTCCACTGCTTC+TGG | 0.281087 | 3_2:+67733506 | Msa0419600:CDS |
| TCAGTGGAGGGATTGATTAT+TGG | 0.289338 | 3_2:-67733286 | None:intergenic |
| CTGAAGTCTGGCATCGAATA+AGG | 0.289540 | 3_2:+67737075 | Msa0419600:three_prime_UTR |
| TAGGAACTATCCTCTCTTAA+TGG | 0.308920 | 3_2:+67734351 | Msa0419600:intron |
| GGCTGAAAATATCAAAATTT+CGG | 0.313683 | 3_2:+67735534 | Msa0419600:CDS |
| TCTACCTTTGTTTCTGGAAA+TGG | 0.315025 | 3_2:-67733486 | None:intergenic |
| TGACTACCTCGATGCAAATT+TGG | 0.321570 | 3_2:+67736366 | Msa0419600:CDS |
| GTATTTCACAGCTATGGCTT+GGG | 0.324222 | 3_2:+67736552 | Msa0419600:intron |
| GTTGCTGAATGGACCATCTT+TGG | 0.343607 | 3_2:+67735193 | Msa0419600:intron |
| GCGTAACAGAGAGGAGAAAA+TGG | 0.355452 | 3_2:+67733192 | Msa0419600:exon |
| TAAATTTGATTTCTGAAGTC+TGG | 0.364661 | 3_2:+67737063 | Msa0419600:three_prime_UTR |
| GCACAACCAGCAGCCAGAGC+TGG | 0.367552 | 3_2:-67734391 | None:intergenic |
| TTGTGAATAAACTTGTGAAA+TGG | 0.372426 | 3_2:+67735512 | Msa0419600:CDS |
| ACCTGTGCTTCACTGACAAT+AGG | 0.380793 | 3_2:-67735586 | None:intergenic |
| AAGATGTGAGCGCGTATCTA+AGG | 0.388834 | 3_2:+67736602 | Msa0419600:CDS |
| AATATTGAAGCCGTCTGAAT+TGG | 0.395523 | 3_2:+67734417 | Msa0419600:CDS |
| CCACCAAGCTCTAGTGAAAC+AGG | 0.398736 | 3_2:-67734952 | None:intergenic |
| TTAAACTTACATGCACAATA+AGG | 0.400421 | 3_2:-67735258 | None:intergenic |
| GGTATTTCACAGCTATGGCT+TGG | 0.402032 | 3_2:+67736551 | Msa0419600:intron |
| TTTAGGACCTGTTTGGAGTT+GGG | 0.403452 | 3_2:+67734524 | Msa0419600:intron |
| ATCCATTGGAAGAAGGTTGC+AGG | 0.404314 | 3_2:+67735557 | Msa0419600:CDS |
| TTTACCGGTAGCTCTGCAAC+TGG | 0.405109 | 3_2:+67734810 | Msa0419600:CDS |
| TGAGGATGTTGACCTTGATA+AGG | 0.409876 | 3_2:+67734996 | Msa0419600:CDS |
| ATTAATGCAACAACACCAAT+AGG | 0.410007 | 3_2:-67734205 | None:intergenic |
| AGTAGACAATTATTCATAGA+TGG | 0.413804 | 3_2:+67733229 | Msa0419600:CDS |
| GGATATACCAGCTGCAACTA+AGG | 0.414452 | 3_2:+67733427 | Msa0419600:CDS |
| ATTCGATAGATTTCCTTTAC+CGG | 0.420727 | 3_2:+67734795 | Msa0419600:intron |
| TTGGAAAATCGCTCCAGCTC+TGG | 0.424242 | 3_2:+67734378 | Msa0419600:CDS |
| ATCCCATCCCGATGTTGATA+AGG | 0.425124 | 3_2:+67734631 | Msa0419600:CDS |
| CCAGAAACAAAGGTAGAGAT+TGG | 0.430993 | 3_2:+67733492 | Msa0419600:CDS |
| CAGCCTGTTTCACTAGAGCT+TGG | 0.432951 | 3_2:+67734949 | Msa0419600:intron |
| GGATGAAGCACTAGCGGATC+TGG | 0.434432 | 3_2:+67733977 | Msa0419600:CDS |
| TTCAATGCAGCATTTAAAGA+AGG | 0.434642 | 3_2:+67736310 | Msa0419600:intron |
| TATCAAAATTTCGGATCCAT+TGG | 0.441214 | 3_2:+67735543 | Msa0419600:CDS |
| TACTATGCGGGGCTTGCTGA+AGG | 0.443897 | 3_2:+67734112 | Msa0419600:CDS |
| TGTGAATAAACTTGTGAAAT+GGG | 0.447654 | 3_2:+67735513 | Msa0419600:CDS |
| CTCTTCAAGCTGGAATTGTA+TGG | 0.448311 | 3_2:+67736725 | Msa0419600:CDS |
| GTTATTAAACAGTTGCTGAA+TGG | 0.450207 | 3_2:+67735182 | Msa0419600:intron |
| GGCTCCTGTATCCCTTCCTA+TGG | 0.450658 | 3_2:+67734153 | Msa0419600:CDS |
| TTATTGTTATCTTAAGTTGT+TGG | 0.457855 | 3_2:+67737119 | Msa0419600:three_prime_UTR |
| GTTAACTATCACAGCTTTGA+AGG | 0.463549 | 3_2:-67737025 | None:intergenic |
| AAATTTATCATCACTTTACA+TGG | 0.464511 | 3_2:-67737047 | None:intergenic |
| TTGGAAGAAGGTTGCAGGCT+AGG | 0.469097 | 3_2:+67735562 | Msa0419600:CDS |
| ATCGCTCCAGCTCTGGCTGC+TGG | 0.469974 | 3_2:+67734385 | Msa0419600:CDS |
| GAGGATGTTGACCTTGATAA+GGG | 0.470972 | 3_2:+67734997 | Msa0419600:CDS |
| AAGTTTATTCACAAATTCTA+CGG | 0.471124 | 3_2:-67735503 | None:intergenic |
| ACCAGCTTCATGGCCTAATC+CGG | 0.472397 | 3_2:-67734597 | None:intergenic |
| ATTTCGGATCCATTGGAAGA+AGG | 0.477666 | 3_2:+67735550 | Msa0419600:CDS |
| CCCTATTGTCAGTGAAGCAC+AGG | 0.482906 | 3_2:+67735585 | Msa0419600:CDS |
| ATTCTGCAGGCTCTTCAAGC+TGG | 0.483750 | 3_2:+67736715 | Msa0419600:intron |
| CCTGTGCTTCACTGACAATA+GGG | 0.485460 | 3_2:-67735585 | None:intergenic |
| GTTCAAACCTTATCAACATC+GGG | 0.486154 | 3_2:-67734638 | None:intergenic |
| AGTTGCAGAGCTACCGGTAA+AGG | 0.487812 | 3_2:-67734808 | None:intergenic |
| ACATCTTCCTTAGTTGCAGC+TGG | 0.488001 | 3_2:-67733434 | None:intergenic |
| CCCTCCACTGAAAATATCAT+AGG | 0.488751 | 3_2:+67733298 | Msa0419600:CDS |
| GTATCCATAGGAAGGGATAC+AGG | 0.493292 | 3_2:-67734157 | None:intergenic |
| TGCGGGGCTTGCTGAAGGGT+TGG | 0.496806 | 3_2:+67734117 | Msa0419600:CDS |
| TATTTCGCCCAACTCCAAAC+AGG | 0.497837 | 3_2:-67734531 | None:intergenic |
| CATGTTCTGAAGGAGCCTAT+TGG | 0.502581 | 3_2:+67734190 | Msa0419600:CDS |
| CGTAAAGAAGCAGCCAAAGA+TGG | 0.503081 | 3_2:-67735206 | None:intergenic |
| GTCACATCGGTTACGATGGT+TGG | 0.503397 | 3_2:-67736347 | None:intergenic |
| CAAGCTTCATTCAAGCTCCA+TGG | 0.506934 | 3_2:+67736764 | Msa0419600:CDS |
| GCTTCTGGTTCTGTTCGTGC+TGG | 0.509086 | 3_2:+67733521 | Msa0419600:CDS |
| AAAGAAGTTGGCCTTCCTCC+TGG | 0.512329 | 3_2:+67734557 | Msa0419600:CDS |
| AAGCTCCTATACTCAACAAA+AGG | 0.512483 | 3_2:+67733260 | Msa0419600:CDS |
| CCTGTTTCACTAGAGCTTGG+TGG | 0.513971 | 3_2:+67734952 | Msa0419600:CDS |
| TTTGGCTGCTTCTTTACGAA+TGG | 0.514086 | 3_2:+67735211 | Msa0419600:CDS |
| AAGCTTCATTCAAGCTCCAT+GGG | 0.519280 | 3_2:+67736765 | Msa0419600:CDS |
| AACCTTATCAACATCGGGAT+GGG | 0.520697 | 3_2:-67734633 | None:intergenic |
| ATACATATCTGATGAGCAGT+GGG | 0.523721 | 3_2:+67736988 | Msa0419600:CDS |
| AGGGTTGGATGCAAAGCAAA+AGG | 0.525153 | 3_2:+67734132 | Msa0419600:CDS |
| TTGGTCGCGAATTAGGAGAA+TGG | 0.527821 | 3_2:+67736809 | Msa0419600:CDS |
| GCTCCCAGTTGCAGAGCTAC+CGG | 0.528239 | 3_2:-67734814 | None:intergenic |
| TCTTCGAGCAATTGCTGCAA+AGG | 0.528718 | 3_2:+67733547 | Msa0419600:CDS |
| ATCCTCTCTTAATGGCGACT+TGG | 0.533379 | 3_2:+67734359 | Msa0419600:CDS |
| CTTTAAGAGCCATGTTCTGA+AGG | 0.535553 | 3_2:+67734180 | Msa0419600:CDS |
| TATTTCACAGCTATGGCTTG+GGG | 0.535756 | 3_2:+67736553 | Msa0419600:intron |
| AATAGATTGTGGAAAGCCAC+TGG | 0.537548 | 3_2:+67733956 | Msa0419600:CDS |
| TATCTGATGAGCAGTGGGGC+TGG | 0.538103 | 3_2:+67736993 | Msa0419600:CDS |
| AACTTAAGATAACAATAACT+TGG | 0.542633 | 3_2:-67737114 | None:intergenic |
| TTGTTGCATTAATTACTCCA+TGG | 0.543900 | 3_2:+67734215 | Msa0419600:CDS |
| GGCGAAATATGCAAAGAAGT+TGG | 0.547648 | 3_2:+67734545 | Msa0419600:CDS |
| TCAATGCAGCATTTAAAGAA+GGG | 0.549849 | 3_2:+67736311 | Msa0419600:intron |
| TCTTAAAGGTATCCATAGGA+AGG | 0.554905 | 3_2:-67734165 | None:intergenic |
| AGGCACACCAACCCTTATCA+AGG | 0.555964 | 3_2:-67735008 | None:intergenic |
| AGCCTGCAACCTTCTTCCAA+TGG | 0.556310 | 3_2:-67735559 | None:intergenic |
| TTAACTATCACAGCTTTGAA+GGG | 0.557676 | 3_2:-67737024 | None:intergenic |
| TAGATCGATTGCTTCTTCCT+CGG | 0.561075 | 3_2:-67736435 | None:intergenic |
| ATCTCAACGGCTAAGAGTGA+AGG | 0.561409 | 3_2:+67736176 | Msa0419600:CDS |
| AGCTGCGGCACAGCTAATCA+AGG | 0.562042 | 3_2:+67734848 | Msa0419600:CDS |
| ACCGGATTAGGCCATGAAGC+TGG | 0.566934 | 3_2:+67734596 | Msa0419600:CDS |
| CATGGAGCTTGAATGAAGCT+TGG | 0.568220 | 3_2:-67736763 | None:intergenic |
| ATAATATTATCATTATAGCA+TGG | 0.568490 | 3_2:+67733106 | Msa0419600:five_prime_UTR |
| TCCGCTAGTGCTTCATCCAG+TGG | 0.569359 | 3_2:-67733972 | None:intergenic |
| CAATAGGCTCCTTCAGAACA+TGG | 0.574620 | 3_2:-67734189 | None:intergenic |
| AGTTCAAACCTTATCAACAT+CGG | 0.576734 | 3_2:-67734639 | None:intergenic |
| GACTGGTGGGCGTCGCCCAG+AGG | 0.577345 | 3_2:+67736211 | Msa0419600:CDS |
| AAGCTTGAATCAATAGATTG+TGG | 0.586574 | 3_2:+67733945 | Msa0419600:CDS |
| AAACCTTATCAACATCGGGA+TGG | 0.586805 | 3_2:-67734634 | None:intergenic |
| TTCCAAGTCGCCATTAAGAG+AGG | 0.587691 | 3_2:-67734361 | None:intergenic |
| TAACTATCACAGCTTTGAAG+GGG | 0.590762 | 3_2:-67737023 | None:intergenic |
| TGGCTCTTAAAGGTATCCAT+AGG | 0.592547 | 3_2:-67734169 | None:intergenic |
| ACTATGCGGGGCTTGCTGAA+GGG | 0.603077 | 3_2:+67734113 | Msa0419600:CDS |
| TTCATTCAAGCTCCATGGGG+AGG | 0.608597 | 3_2:+67736769 | Msa0419600:CDS |
| CTACGTTTAATGCCTCCCCA+TGG | 0.609880 | 3_2:-67736781 | None:intergenic |
| AATTATTCATAGATGGAGAG+TGG | 0.612529 | 3_2:+67733236 | Msa0419600:CDS |
| TACACAGATGCCAATTCAGA+CGG | 0.614415 | 3_2:-67734427 | None:intergenic |
| AGAGCCATTTCCAGAAACAA+AGG | 0.615015 | 3_2:+67733482 | Msa0419600:CDS |
| GCCACTGGATGAAGCACTAG+CGG | 0.621235 | 3_2:+67733971 | Msa0419600:CDS |
| GATACATATCTGATGAGCAG+TGG | 0.625206 | 3_2:+67736987 | Msa0419600:CDS |
| TTACCGGTAGCTCTGCAACT+GGG | 0.626292 | 3_2:+67734811 | Msa0419600:CDS |
| CTTAAAGGTATCCATAGGAA+GGG | 0.626729 | 3_2:-67734164 | None:intergenic |
| GGTAGTCACATCGGTTACGA+TGG | 0.633466 | 3_2:-67736351 | None:intergenic |
| TTGCATCGAGGTAGTCACAT+CGG | 0.634094 | 3_2:-67736360 | None:intergenic |
| TTCTCTCCAAATTTGCATCG+AGG | 0.647218 | 3_2:-67736372 | None:intergenic |
| ACGAACAGAACCAGAAGCAG+TGG | 0.650272 | 3_2:-67733516 | None:intergenic |
| GAGCAAGATTATGACAGCTG+CGG | 0.668052 | 3_2:+67734833 | Msa0419600:CDS |
| GCTAAGAGTGCGTAACAGAG+AGG | 0.683744 | 3_2:+67733183 | Msa0419600:five_prime_UTR |
| TGGGGAGGCATTAAACGTAG+CGG | 0.693952 | 3_2:+67736784 | Msa0419600:CDS |
| AAGAAAGAAACGTATACACA+AGG | 0.695848 | 3_2:+67733155 | Msa0419600:five_prime_UTR |
| TAACATCAATGAAAGCAACA+TGG | 0.708034 | 3_2:-67737200 | None:intergenic |
| AGCTTCATTCAAGCTCCATG+GGG | 0.709625 | 3_2:+67736766 | Msa0419600:CDS |
| GCATCGAATAAGGTGCGATG+TGG | 0.714161 | 3_2:+67737085 | Msa0419600:three_prime_UTR |
| TACATATCTGATGAGCAGTG+GGG | 0.771154 | 3_2:+67736989 | Msa0419600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTGATTTTATTATATATT+AGG | + | chr3_2:67734332-67734351 | Msa0419600:intron | 10.0% |
| !! | ACAAATTAATAAACTATAAA+CGG | - | chr3_2:67735157-67735176 | None:intergenic | 10.0% |
| !!! | AATTTTCTTATTGTATAAAT+CGG | + | chr3_2:67735350-67735369 | Msa0419600:intron | 10.0% |
| !! | ATAATATTATCATTATAGCA+TGG | + | chr3_2:67733106-67733125 | Msa0419600:five_prime_UTR | 15.0% |
| !! | AAAAAAGAAAAAAAGAAGTA+AGG | - | chr3_2:67734033-67734052 | None:intergenic | 15.0% |
| !!! | ACAATTCAATATCTAAAATT+TGG | + | chr3_2:67736118-67736137 | Msa0419600:intron | 15.0% |
| !!! | CAATTCAATATCTAAAATTT+GGG | + | chr3_2:67736119-67736138 | Msa0419600:intron | 15.0% |
| !!! | TTGATTTTTTTTCTAACTAA+TGG | + | chr3_2:67736672-67736691 | Msa0419600:intron | 15.0% |
| !!! | TTCTTTCTTTTTTCAAAGAT+TGG | - | chr3_2:67733144-67733163 | None:intergenic | 20.0% |
| !! | AAAAAAAACCAGAAACATTA+AGG | - | chr3_2:67733330-67733349 | None:intergenic | 20.0% |
| !!! | TTCAATTTCATGGATTATTT+TGG | - | chr3_2:67733753-67733772 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTTTTGCTTACT+TGG | + | chr3_2:67734040-67734059 | Msa0419600:intron | 20.0% |
| !!! | CAAATGATTTTGTTCATTAA+TGG | + | chr3_2:67734671-67734690 | Msa0419600:intron | 20.0% |
| !! | ACATGTATTATTGATGAAAT+GGG | - | chr3_2:67735301-67735320 | None:intergenic | 20.0% |
| !! | AACATGTATTATTGATGAAA+TGG | - | chr3_2:67735302-67735321 | None:intergenic | 20.0% |
| !! | AAGTTTATTCACAAATTCTA+CGG | - | chr3_2:67735506-67735525 | None:intergenic | 20.0% |
| !! | AAAAATCTTATGAGAGTAAA+TGG | - | chr3_2:67735756-67735775 | None:intergenic | 20.0% |
| !!! | ATTTACTCTCATAAGATTTT+TGG | + | chr3_2:67735755-67735774 | Msa0419600:intron | 20.0% |
| !!! | ACTACTATATGTTTTCATTT+TGG | - | chr3_2:67735954-67735973 | None:intergenic | 20.0% |
| !!! | CTTAATGTTTTTAAATTGCA+CGG | - | chr3_2:67736065-67736084 | None:intergenic | 20.0% |
| !!! | TTTTAGATATTGAATTGTCT+TGG | - | chr3_2:67736116-67736135 | None:intergenic | 20.0% |
| !!! | AGTATTGAATTTTATCTCAA+CGG | + | chr3_2:67736163-67736182 | Msa0419600:CDS | 20.0% |
| !! | TCACATTTGAAAATATTAGA+GGG | - | chr3_2:67736881-67736900 | None:intergenic | 20.0% |
| !! | TTCACATTTGAAAATATTAG+AGG | - | chr3_2:67736882-67736901 | None:intergenic | 20.0% |
| !! | AAATTTATCATCACTTTACA+TGG | - | chr3_2:67737050-67737069 | None:intergenic | 20.0% |
| !! | AACTTAAGATAACAATAACT+TGG | - | chr3_2:67737117-67737136 | None:intergenic | 20.0% |
| !!! | TTATTGTTATCTTAAGTTGT+TGG | + | chr3_2:67737119-67737138 | Msa0419600:three_prime_UTR | 20.0% |
| ! | AGTAGACAATTATTCATAGA+TGG | + | chr3_2:67733229-67733248 | Msa0419600:CDS | 25.0% |
| ! | TTATAACTACTTCTAAGTTG+TGG | + | chr3_2:67733374-67733393 | Msa0419600:intron | 25.0% |
| !!! | TTCTATTTTTGCTCTTGATA+TGG | + | chr3_2:67733582-67733601 | Msa0419600:intron | 25.0% |
| !! | ATCTACGATTTTCAATTTCA+TGG | - | chr3_2:67733763-67733782 | None:intergenic | 25.0% |
| ! | ATTTCAGTAACTAAAACTGT+TGG | + | chr3_2:67733804-67733823 | Msa0419600:intron | 25.0% |
| ! | TTTCAGTAACTAAAACTGTT+GGG | + | chr3_2:67733805-67733824 | Msa0419600:intron | 25.0% |
| !! | GTCTTATCGTTTACAATTTT+AGG | + | chr3_2:67734507-67734526 | Msa0419600:intron | 25.0% |
| ! | GTAACAATATTAAAAACACC+AGG | - | chr3_2:67734578-67734597 | None:intergenic | 25.0% |
| !!! | GGTGTTTTTAATATTGTTAC+CGG | + | chr3_2:67734578-67734597 | Msa0419600:CDS | 25.0% |
| ! | TTTAATATTGTTACCGGATT+AGG | + | chr3_2:67734584-67734603 | Msa0419600:CDS | 25.0% |
| ! | CAAATTAGACATATTTGAGA+AGG | - | chr3_2:67735031-67735050 | None:intergenic | 25.0% |
| ! | TCTCAAATATGTCTAATTTG+TGG | + | chr3_2:67735031-67735050 | Msa0419600:intron | 25.0% |
| !! | TTTCTTGCAATGTCAATTTT+TGG | + | chr3_2:67735081-67735100 | Msa0419600:intron | 25.0% |
| ! | ATTCAGCAACTGTTTAATAA+CGG | - | chr3_2:67735183-67735202 | None:intergenic | 25.0% |
| ! | TTAAACTTACATGCACAATA+AGG | - | chr3_2:67735261-67735280 | None:intergenic | 25.0% |
| ! | CATGTATTATTGATGAAATG+GGG | - | chr3_2:67735300-67735319 | None:intergenic | 25.0% |
| ! | TTTCTTATTGTATAAATCGG+AGG | + | chr3_2:67735353-67735372 | Msa0419600:intron | 25.0% |
| ! | TTCTTATTGTATAAATCGGA+GGG | + | chr3_2:67735354-67735373 | Msa0419600:intron | 25.0% |
| ! | TAAAACACTTATACTGTTTC+AGG | + | chr3_2:67735471-67735490 | Msa0419600:intron | 25.0% |
| ! | TTGTGAATAAACTTGTGAAA+TGG | + | chr3_2:67735512-67735531 | Msa0419600:CDS | 25.0% |
| ! | TGTGAATAAACTTGTGAAAT+GGG | + | chr3_2:67735513-67735532 | Msa0419600:CDS | 25.0% |
| ! | GGCTGAAAATATCAAAATTT+CGG | + | chr3_2:67735534-67735553 | Msa0419600:CDS | 25.0% |
| ! | TAAAGTCATGCATTAGTTAT+TGG | + | chr3_2:67735671-67735690 | Msa0419600:intron | 25.0% |
| ! | TTATCGTATCTATATGCAAA+AGG | + | chr3_2:67735800-67735819 | Msa0419600:intron | 25.0% |
| !! | AAAAGGAGGTTTTTAATCAA+TGG | + | chr3_2:67735817-67735836 | Msa0419600:intron | 25.0% |
| !!! | TTTAATCAATGGCTTTAGTT+TGG | + | chr3_2:67735828-67735847 | Msa0419600:intron | 25.0% |
| !! | TCTTTTATGATAGTATATCC+TGG | - | chr3_2:67736638-67736657 | None:intergenic | 25.0% |
| !! | ACTTATATTGATTATTCTGC+AGG | + | chr3_2:67736702-67736721 | Msa0419600:intron | 25.0% |
| !!! | GAGATTTTAAGAAACAAGAT+TGG | - | chr3_2:67736840-67736859 | None:intergenic | 25.0% |
| ! | AATATTAGAGGGAGAATTAA+AGG | - | chr3_2:67736870-67736889 | None:intergenic | 25.0% |
| !!! | TAAATTTGATTTCTGAAGTC+TGG | + | chr3_2:67737063-67737082 | Msa0419600:three_prime_UTR | 25.0% |
| AAGAAAGAAACGTATACACA+AGG | + | chr3_2:67733155-67733174 | Msa0419600:five_prime_UTR | 30.0% | |
| AATTATTCATAGATGGAGAG+TGG | + | chr3_2:67733236-67733255 | Msa0419600:CDS | 30.0% | |
| ! | TTGCTCTTGATATGGATTAA+AGG | + | chr3_2:67733590-67733609 | Msa0419600:intron | 30.0% |
| ! | TGCTCTTGATATGGATTAAA+GGG | + | chr3_2:67733591-67733610 | Msa0419600:intron | 30.0% |
| GTGAGAATTGGAAAAGAAAA+AGG | - | chr3_2:67733896-67733915 | None:intergenic | 30.0% | |
| ACTGAGAAAAAGAATGAACT+AGG | + | chr3_2:67733921-67733940 | Msa0419600:CDS | 30.0% | |
| AAGCTTGAATCAATAGATTG+TGG | + | chr3_2:67733945-67733964 | Msa0419600:CDS | 30.0% | |
| TCTGGTAATTATTATTCGAC+TGG | + | chr3_2:67733995-67734014 | Msa0419600:intron | 30.0% | |
| !!! | TAGTTGTTTTGAGTACTATG+CGG | + | chr3_2:67734099-67734118 | Msa0419600:CDS | 30.0% |
| ATTAATGCAACAACACCAAT+AGG | - | chr3_2:67734208-67734227 | None:intergenic | 30.0% | |
| TTGTTGCATTAATTACTCCA+TGG | + | chr3_2:67734215-67734234 | Msa0419600:CDS | 30.0% | |
| TGAAGAAAAAGAAGATACCA+TGG | - | chr3_2:67734235-67734254 | None:intergenic | 30.0% | |
| !!! | TTACAATTTTAGGACCTGTT+TGG | + | chr3_2:67734517-67734536 | Msa0419600:intron | 30.0% |
| ACAATATTAAAAACACCAGG+AGG | - | chr3_2:67734575-67734594 | None:intergenic | 30.0% | |
| AGTTCAAACCTTATCAACAT+CGG | - | chr3_2:67734642-67734661 | None:intergenic | 30.0% | |
| AACTATAAGAAGCTAGATCT+TGG | + | chr3_2:67734699-67734718 | Msa0419600:intron | 30.0% | |
| ATTCGATAGATTTCCTTTAC+CGG | + | chr3_2:67734795-67734814 | Msa0419600:intron | 30.0% | |
| ACATCCTCAAAAACAACTAT+CGG | - | chr3_2:67734985-67735004 | None:intergenic | 30.0% | |
| GTTATTAAACAGTTGCTGAA+TGG | + | chr3_2:67735182-67735201 | Msa0419600:intron | 30.0% | |
| ! | CCAATAATAGACTTGGTAAA+AGG | - | chr3_2:67735423-67735442 | None:intergenic | 30.0% |
| ! | CCTTTTACCAAGTCTATTAT+TGG | + | chr3_2:67735420-67735439 | Msa0419600:intron | 30.0% |
| ATCAAAGCCAATAATAGACT+TGG | - | chr3_2:67735430-67735449 | None:intergenic | 30.0% | |
| TATCAAAATTTCGGATCCAT+TGG | + | chr3_2:67735543-67735562 | Msa0419600:CDS | 30.0% | |
| TTATGAGAGTAAATGGAACA+AGG | - | chr3_2:67735749-67735768 | None:intergenic | 30.0% | |
| TATTGAATTGTCTTGGTTCA+AGG | - | chr3_2:67736109-67736128 | None:intergenic | 30.0% | |
| TTCAATGCAGCATTTAAAGA+AGG | + | chr3_2:67736310-67736329 | Msa0419600:intron | 30.0% | |
| TCAATGCAGCATTTAAAGAA+GGG | + | chr3_2:67736311-67736330 | Msa0419600:intron | 30.0% | |
| ! | ATTTGGAGAGAAGAAGTTTT+TGG | + | chr3_2:67736383-67736402 | Msa0419600:CDS | 30.0% |
| AATTTGGTATTTCACAGCTA+TGG | + | chr3_2:67736546-67736565 | Msa0419600:intron | 30.0% | |
| !!! | AGGGAGAATTAAAGGTATTT+TGG | - | chr3_2:67736862-67736881 | None:intergenic | 30.0% |
| !!! | TTGTTGTTGTTTTGTCATTC+AGG | + | chr3_2:67736927-67736946 | Msa0419600:intron | 30.0% |
| !!! | TGTTGTTGTTTTGTCATTCA+GGG | + | chr3_2:67736928-67736947 | Msa0419600:intron | 30.0% |
| !! | TTAACTATCACAGCTTTGAA+GGG | - | chr3_2:67737027-67737046 | None:intergenic | 30.0% |
| TAACATCAATGAAAGCAACA+TGG | - | chr3_2:67737203-67737222 | None:intergenic | 30.0% | |
| AAGCTCCTATACTCAACAAA+AGG | + | chr3_2:67733260-67733279 | Msa0419600:CDS | 35.0% | |
| ! | GGAATCCTTTTGTTGAGTAT+AGG | - | chr3_2:67733268-67733287 | None:intergenic | 35.0% |
| ! | CCTATGATATTTTCAGTGGA+GGG | - | chr3_2:67733301-67733320 | None:intergenic | 35.0% |
| ! | ACCTATGATATTTTCAGTGG+AGG | - | chr3_2:67733302-67733321 | None:intergenic | 35.0% |
| ! | CGTACCTATGATATTTTCAG+TGG | - | chr3_2:67733305-67733324 | None:intergenic | 35.0% |
| AAGTTGTGGCATTATGTGAA+TGG | + | chr3_2:67733388-67733407 | Msa0419600:intron | 35.0% | |
| !! | TCTACCTTTGTTTCTGGAAA+TGG | - | chr3_2:67733489-67733508 | None:intergenic | 35.0% |
| ! | GAAATGAGTGTTGCACAATT+TGG | + | chr3_2:67733709-67733728 | Msa0419600:intron | 35.0% |
| GTTACTGAAATTGTCTCGAA+TGG | - | chr3_2:67733795-67733814 | None:intergenic | 35.0% | |
| TCTCAGTTATCTGTGAGAAT+TGG | - | chr3_2:67733908-67733927 | None:intergenic | 35.0% | |
| CTGCTGTGGTTTGATTATAT+AGG | + | chr3_2:67734066-67734085 | Msa0419600:intron | 35.0% | |
| !!! | AGTTGTTTTGAGTACTATGC+GGG | + | chr3_2:67734100-67734119 | Msa0419600:CDS | 35.0% |
| !! | CTTAAAGGTATCCATAGGAA+GGG | - | chr3_2:67734167-67734186 | None:intergenic | 35.0% |
| !! | TCTTAAAGGTATCCATAGGA+AGG | - | chr3_2:67734168-67734187 | None:intergenic | 35.0% |
| ATCTGCTTTGATGAGCTATT+TGG | + | chr3_2:67734290-67734309 | Msa0419600:intron | 35.0% | |
| TAGGAACTATCCTCTCTTAA+TGG | + | chr3_2:67734351-67734370 | Msa0419600:intron | 35.0% | |
| AATATTGAAGCCGTCTGAAT+TGG | + | chr3_2:67734417-67734436 | Msa0419600:CDS | 35.0% | |
| TATTAAAAACACCAGGAGGA+AGG | - | chr3_2:67734571-67734590 | None:intergenic | 35.0% | |
| GTTCAAACCTTATCAACATC+GGG | - | chr3_2:67734641-67734660 | None:intergenic | 35.0% | |
| CATCCTCAAAAACAACTATC+GGG | - | chr3_2:67734984-67735003 | None:intergenic | 35.0% | |
| !! | TTTTTGGTATCCGTAACCTA+TGG | + | chr3_2:67735097-67735116 | Msa0419600:intron | 35.0% |
| !! | CTTCTATTTCTACCAGTCTA+AGG | - | chr3_2:67735389-67735408 | None:intergenic | 35.0% |
| TGGTAAGTTAAGCACATATC+TGG | - | chr3_2:67735643-67735662 | None:intergenic | 35.0% | |
| TGCATGACTTTAACAACAAG+TGG | - | chr3_2:67735663-67735682 | None:intergenic | 35.0% | |
| AGTCATGCATTAGTTATTGG+TGG | + | chr3_2:67735674-67735693 | Msa0419600:intron | 35.0% | |
| ! | TTGGTTTAAGACGTTGTTTG+AGG | + | chr3_2:67735774-67735793 | Msa0419600:intron | 35.0% |
| TCGTATCTATATGCAAAAGG+AGG | + | chr3_2:67735803-67735822 | Msa0419600:intron | 35.0% | |
| ! | CATGCTAGCAGTAGATTTTT+CGG | - | chr3_2:67735879-67735898 | None:intergenic | 35.0% |
| ATGGACTTACTGTATTTGTC+TGG | + | chr3_2:67735896-67735915 | Msa0419600:intron | 35.0% | |
| ! | TTGGATAACAGAGAAAGCAT+TGG | - | chr3_2:67735935-67735954 | None:intergenic | 35.0% |
| TTTGCGTAGTTACCATGATT+TGG | + | chr3_2:67736027-67736046 | Msa0419600:intron | 35.0% | |
| TCAGAAAGAAAGCCAAATCA+TGG | - | chr3_2:67736042-67736061 | None:intergenic | 35.0% | |
| !! | AATGTTTTTACAGAGAGCAC+AGG | - | chr3_2:67736410-67736429 | None:intergenic | 35.0% |
| TGTAAAAACATTTAGCACCG+AGG | + | chr3_2:67736418-67736437 | Msa0419600:CDS | 35.0% | |
| !!! | ACCACTTTTTTCTTCACTTG+TGG | + | chr3_2:67736505-67736524 | Msa0419600:intron | 35.0% |
| TCCACAAGTGAAGAAAAAAG+TGG | - | chr3_2:67736509-67736528 | None:intergenic | 35.0% | |
| TGATGTCAAAGCCACAAATT+TGG | + | chr3_2:67736530-67736549 | Msa0419600:intron | 35.0% | |
| GCTGTGAAATACCAAATTTG+TGG | - | chr3_2:67736544-67736563 | None:intergenic | 35.0% | |
| !!! | GTTGTTGTTTTGTCATTCAG+GGG | + | chr3_2:67736929-67736948 | Msa0419600:intron | 35.0% |
| ATACATATCTGATGAGCAGT+GGG | + | chr3_2:67736988-67737007 | Msa0419600:CDS | 35.0% | |
| !! | TAACTATCACAGCTTTGAAG+GGG | - | chr3_2:67737026-67737045 | None:intergenic | 35.0% |
| ! | GTTAACTATCACAGCTTTGA+AGG | - | chr3_2:67737028-67737047 | None:intergenic | 35.0% |
| TCAGTGGAGGGATTGATTAT+TGG | - | chr3_2:67733289-67733308 | None:intergenic | 40.0% | |
| CCCTCCACTGAAAATATCAT+AGG | + | chr3_2:67733298-67733317 | Msa0419600:CDS | 40.0% | |
| GGTACGTACCTTAATGTTTC+TGG | + | chr3_2:67733319-67733338 | Msa0419600:intron | 40.0% | |
| TGAATGGTTGACACAAATGC+AGG | + | chr3_2:67733404-67733423 | Msa0419600:intron | 40.0% | |
| GAATGGTTGACACAAATGCA+GGG | + | chr3_2:67733405-67733424 | Msa0419600:intron | 40.0% | |
| AATGGTTGACACAAATGCAG+GGG | + | chr3_2:67733406-67733425 | Msa0419600:intron | 40.0% | |
| ! | TTTTAGCAGCATCAACAGCA+AGG | - | chr3_2:67733463-67733482 | None:intergenic | 40.0% |
| AGAGCCATTTCCAGAAACAA+AGG | + | chr3_2:67733482-67733501 | Msa0419600:CDS | 40.0% | |
| ! | CCAATCTCTACCTTTGTTTC+TGG | - | chr3_2:67733495-67733514 | None:intergenic | 40.0% |
| CCAGAAACAAAGGTAGAGAT+TGG | + | chr3_2:67733492-67733511 | Msa0419600:CDS | 40.0% | |
| TGTATGTCTTGAGACCTGAT+TGG | + | chr3_2:67733866-67733885 | Msa0419600:intron | 40.0% | |
| AAGAAAAAGGACAGCCAATC+AGG | - | chr3_2:67733883-67733902 | None:intergenic | 40.0% | |
| AATAGATTGTGGAAAGCCAC+TGG | + | chr3_2:67733956-67733975 | Msa0419600:CDS | 40.0% | |
| !!! | GTTGTTTTGAGTACTATGCG+GGG | + | chr3_2:67734101-67734120 | Msa0419600:CDS | 40.0% |
| !! | TGGCTCTTAAAGGTATCCAT+AGG | - | chr3_2:67734172-67734191 | None:intergenic | 40.0% |
| CTTCAGAACATGGCTCTTAA+AGG | - | chr3_2:67734182-67734201 | None:intergenic | 40.0% | |
| ! | CTTTAAGAGCCATGTTCTGA+AGG | + | chr3_2:67734180-67734199 | Msa0419600:CDS | 40.0% |
| TGCTTTGATGAGCTATTTGG+TGG | + | chr3_2:67734293-67734312 | Msa0419600:intron | 40.0% | |
| TACACAGATGCCAATTCAGA+CGG | - | chr3_2:67734430-67734449 | None:intergenic | 40.0% | |
| !!! | TTTTAGGACCTGTTTGGAGT+TGG | + | chr3_2:67734523-67734542 | Msa0419600:intron | 40.0% |
| ! | TTTAGGACCTGTTTGGAGTT+GGG | + | chr3_2:67734524-67734543 | Msa0419600:intron | 40.0% |
| GGCGAAATATGCAAAGAAGT+TGG | + | chr3_2:67734545-67734564 | Msa0419600:CDS | 40.0% | |
| AACCTTATCAACATCGGGAT+GGG | - | chr3_2:67734636-67734655 | None:intergenic | 40.0% | |
| AAACCTTATCAACATCGGGA+TGG | - | chr3_2:67734637-67734656 | None:intergenic | 40.0% | |
| CTATCGAATAATGCGCACAA+TGG | - | chr3_2:67734784-67734803 | None:intergenic | 40.0% | |
| TGAGGATGTTGACCTTGATA+AGG | + | chr3_2:67734996-67735015 | Msa0419600:CDS | 40.0% | |
| GAGGATGTTGACCTTGATAA+GGG | + | chr3_2:67734997-67735016 | Msa0419600:CDS | 40.0% | |
| ATGTTGACCTTGATAAGGGT+TGG | + | chr3_2:67735001-67735020 | Msa0419600:intron | 40.0% | |
| ! | CGGCATATGAGCAAATGTTT+TGG | - | chr3_2:67735137-67735156 | None:intergenic | 40.0% |
| TTTGGCTGCTTCTTTACGAA+TGG | + | chr3_2:67735211-67735230 | Msa0419600:CDS | 40.0% | |
| TCTACCAGTCTAAGGAAATC+TGG | - | chr3_2:67735381-67735400 | None:intergenic | 40.0% | |
| ATTTCGGATCCATTGGAAGA+AGG | + | chr3_2:67735550-67735569 | Msa0419600:CDS | 40.0% | |
| ATTGGTGGAGAGATTGAAAG+CGG | + | chr3_2:67735689-67735708 | Msa0419600:intron | 40.0% | |
| CGAAAAATCTACTGCTAGCA+TGG | + | chr3_2:67735877-67735896 | Msa0419600:intron | 40.0% | |
| !! | GAAGGTGCAACAATTTTGAC+TGG | + | chr3_2:67736194-67736213 | Msa0419600:CDS | 40.0% |
| !!! | GTGCAACAATTTTGACTGGT+GGG | + | chr3_2:67736198-67736217 | Msa0419600:CDS | 40.0% |
| ! | GAGGGTATAATCATACCTCT+GGG | - | chr3_2:67736229-67736248 | None:intergenic | 40.0% |
| TGACTACCTCGATGCAAATT+TGG | + | chr3_2:67736366-67736385 | Msa0419600:CDS | 40.0% | |
| TTCTCTCCAAATTTGCATCG+AGG | - | chr3_2:67736375-67736394 | None:intergenic | 40.0% | |
| TAGATCGATTGCTTCTTCCT+CGG | - | chr3_2:67736438-67736457 | None:intergenic | 40.0% | |
| GTATTTCACAGCTATGGCTT+GGG | + | chr3_2:67736552-67736571 | Msa0419600:intron | 40.0% | |
| TATTTCACAGCTATGGCTTG+GGG | + | chr3_2:67736553-67736572 | Msa0419600:intron | 40.0% | |
| ! | ATCTAAGGTGAGAATAGTCC+AGG | + | chr3_2:67736617-67736636 | Msa0419600:intron | 40.0% |
| CTCTTCAAGCTGGAATTGTA+TGG | + | chr3_2:67736725-67736744 | Msa0419600:CDS | 40.0% | |
| AAGCTTCATTCAAGCTCCAT+GGG | + | chr3_2:67736765-67736784 | Msa0419600:CDS | 40.0% | |
| GATACATATCTGATGAGCAG+TGG | + | chr3_2:67736987-67737006 | Msa0419600:CDS | 40.0% | |
| TACATATCTGATGAGCAGTG+GGG | + | chr3_2:67736989-67737008 | Msa0419600:CDS | 40.0% | |
| GCGTAACAGAGAGGAGAAAA+TGG | + | chr3_2:67733192-67733211 | Msa0419600:exon | 45.0% | |
| GGATATACCAGCTGCAACTA+AGG | + | chr3_2:67733427-67733446 | Msa0419600:CDS | 45.0% | |
| ACATCTTCCTTAGTTGCAGC+TGG | - | chr3_2:67733437-67733456 | None:intergenic | 45.0% | |
| TCTTCGAGCAATTGCTGCAA+AGG | + | chr3_2:67733547-67733566 | Msa0419600:CDS | 45.0% | |
| AGGGTTGGATGCAAAGCAAA+AGG | + | chr3_2:67734132-67734151 | Msa0419600:CDS | 45.0% | |
| GTATCCATAGGAAGGGATAC+AGG | - | chr3_2:67734160-67734179 | None:intergenic | 45.0% | |
| CAATAGGCTCCTTCAGAACA+TGG | - | chr3_2:67734192-67734211 | None:intergenic | 45.0% | |
| !! | CATGTTCTGAAGGAGCCTAT+TGG | + | chr3_2:67734190-67734209 | Msa0419600:CDS | 45.0% |
| ATCCTCTCTTAATGGCGACT+TGG | + | chr3_2:67734359-67734378 | Msa0419600:CDS | 45.0% | |
| TTCCAAGTCGCCATTAAGAG+AGG | - | chr3_2:67734364-67734383 | None:intergenic | 45.0% | |
| TATTTCGCCCAACTCCAAAC+AGG | - | chr3_2:67734534-67734553 | None:intergenic | 45.0% | |
| !! | CCAAAAAAGCACCAGCTTCA+TGG | - | chr3_2:67734610-67734629 | None:intergenic | 45.0% |
| !!! | CCATGAAGCTGGTGCTTTTT+TGG | + | chr3_2:67734607-67734626 | Msa0419600:CDS | 45.0% |
| ATCCCATCCCGATGTTGATA+AGG | + | chr3_2:67734631-67734650 | Msa0419600:CDS | 45.0% | |
| GAGCAAGATTATGACAGCTG+CGG | + | chr3_2:67734833-67734852 | Msa0419600:CDS | 45.0% | |
| !!! | GAGCCCGATAGTTGTTTTTG+AGG | + | chr3_2:67734978-67734997 | Msa0419600:CDS | 45.0% |
| ATCCGTAACCTATGGCGTAA+TGG | + | chr3_2:67735105-67735124 | Msa0419600:intron | 45.0% | |
| CACCATTACGCCATAGGTTA+CGG | - | chr3_2:67735110-67735129 | None:intergenic | 45.0% | |
| GTTGCTGAATGGACCATCTT+TGG | + | chr3_2:67735193-67735212 | Msa0419600:intron | 45.0% | |
| CGTAAAGAAGCAGCCAAAGA+TGG | - | chr3_2:67735209-67735228 | None:intergenic | 45.0% | |
| ATCCATTGGAAGAAGGTTGC+AGG | + | chr3_2:67735557-67735576 | Msa0419600:CDS | 45.0% | |
| CCTGTGCTTCACTGACAATA+GGG | - | chr3_2:67735588-67735607 | None:intergenic | 45.0% | |
| ACCTGTGCTTCACTGACAAT+AGG | - | chr3_2:67735589-67735608 | None:intergenic | 45.0% | |
| ACTACACACTGCATGCAACT+TGG | - | chr3_2:67735997-67736016 | None:intergenic | 45.0% | |
| ATCTCAACGGCTAAGAGTGA+AGG | + | chr3_2:67736176-67736195 | Msa0419600:CDS | 45.0% | |
| !!! | GGTGCAACAATTTTGACTGG+TGG | + | chr3_2:67736197-67736216 | Msa0419600:CDS | 45.0% |
| ! | CGAGGGTATAATCATACCTC+TGG | - | chr3_2:67736230-67736249 | None:intergenic | 45.0% |
| TTGCATCGAGGTAGTCACAT+CGG | - | chr3_2:67736363-67736382 | None:intergenic | 45.0% | |
| GGTATTTCACAGCTATGGCT+TGG | + | chr3_2:67736551-67736570 | Msa0419600:intron | 45.0% | |
| AAGATGTGAGCGCGTATCTA+AGG | + | chr3_2:67736602-67736621 | Msa0419600:CDS | 45.0% | |
| CATGGAGCTTGAATGAAGCT+TGG | - | chr3_2:67736766-67736785 | None:intergenic | 45.0% | |
| CAAGCTTCATTCAAGCTCCA+TGG | + | chr3_2:67736764-67736783 | Msa0419600:CDS | 45.0% | |
| AGCTTCATTCAAGCTCCATG+GGG | + | chr3_2:67736766-67736785 | Msa0419600:CDS | 45.0% | |
| ! | GGCATTAAACGTAGCGGTTT+TGG | + | chr3_2:67736790-67736809 | Msa0419600:CDS | 45.0% |
| TTGGTCGCGAATTAGGAGAA+TGG | + | chr3_2:67736809-67736828 | Msa0419600:CDS | 45.0% | |
| ! | CTGAAGTCTGGCATCGAATA+AGG | + | chr3_2:67737075-67737094 | Msa0419600:three_prime_UTR | 45.0% |
| ! | GCTAAGAGTGCGTAACAGAG+AGG | + | chr3_2:67733183-67733202 | Msa0419600:five_prime_UTR | 50.0% |
| ! | AGAGATTGGTCCACTGCTTC+TGG | + | chr3_2:67733506-67733525 | Msa0419600:CDS | 50.0% |
| ACGAACAGAACCAGAAGCAG+TGG | - | chr3_2:67733519-67733538 | None:intergenic | 50.0% | |
| TGCTTACTTGGACTCTGCTG+TGG | + | chr3_2:67734052-67734071 | Msa0419600:intron | 50.0% | |
| TTGGAAAATCGCTCCAGCTC+TGG | + | chr3_2:67734378-67734397 | Msa0419600:CDS | 50.0% | |
| !! | AAAGAAGTTGGCCTTCCTCC+TGG | + | chr3_2:67734557-67734576 | Msa0419600:CDS | 50.0% |
| ACCAGCTTCATGGCCTAATC+CGG | - | chr3_2:67734600-67734619 | None:intergenic | 50.0% | |
| AGTTGCAGAGCTACCGGTAA+AGG | - | chr3_2:67734811-67734830 | None:intergenic | 50.0% | |
| ! | TTTACCGGTAGCTCTGCAAC+TGG | + | chr3_2:67734810-67734829 | Msa0419600:CDS | 50.0% |
| ! | TTACCGGTAGCTCTGCAACT+GGG | + | chr3_2:67734811-67734830 | Msa0419600:CDS | 50.0% |
| CAGCCTGTTTCACTAGAGCT+TGG | + | chr3_2:67734949-67734968 | Msa0419600:intron | 50.0% | |
| ! | CCACCAAGCTCTAGTGAAAC+AGG | - | chr3_2:67734955-67734974 | None:intergenic | 50.0% |
| CCTGTTTCACTAGAGCTTGG+TGG | + | chr3_2:67734952-67734971 | Msa0419600:CDS | 50.0% | |
| AGGCACACCAACCCTTATCA+AGG | - | chr3_2:67735011-67735030 | None:intergenic | 50.0% | |
| GGATCACACCATTACGCCAT+AGG | - | chr3_2:67735116-67735135 | None:intergenic | 50.0% | |
| GGGTCCAGATTTCCTTAGAC+TGG | + | chr3_2:67735374-67735393 | Msa0419600:intron | 50.0% | |
| AGCCTGCAACCTTCTTCCAA+TGG | - | chr3_2:67735562-67735581 | None:intergenic | 50.0% | |
| TTGGAAGAAGGTTGCAGGCT+AGG | + | chr3_2:67735562-67735581 | Msa0419600:CDS | 50.0% | |
| CCCTATTGTCAGTGAAGCAC+AGG | + | chr3_2:67735585-67735604 | Msa0419600:CDS | 50.0% | |
| TACCCTCGAATACGTGTGCT+CGG | + | chr3_2:67736242-67736261 | Msa0419600:intron | 50.0% | |
| AACCGAGCACACGTATTCGA+GGG | - | chr3_2:67736247-67736266 | None:intergenic | 50.0% | |
| ! | GTCACATCGGTTACGATGGT+TGG | - | chr3_2:67736350-67736369 | None:intergenic | 50.0% |
| ! | GGTAGTCACATCGGTTACGA+TGG | - | chr3_2:67736354-67736373 | None:intergenic | 50.0% |
| ATTCTGCAGGCTCTTCAAGC+TGG | + | chr3_2:67736715-67736734 | Msa0419600:intron | 50.0% | |
| TTCATTCAAGCTCCATGGGG+AGG | + | chr3_2:67736769-67736788 | Msa0419600:CDS | 50.0% | |
| CTACGTTTAATGCCTCCCCA+TGG | - | chr3_2:67736784-67736803 | None:intergenic | 50.0% | |
| !! | TGGGGAGGCATTAAACGTAG+CGG | + | chr3_2:67736784-67736803 | Msa0419600:CDS | 50.0% |
| !! | AGCGGTTTTGGTCGCGAATT+AGG | + | chr3_2:67736802-67736821 | Msa0419600:CDS | 50.0% |
| GCATCGAATAAGGTGCGATG+TGG | + | chr3_2:67737085-67737104 | Msa0419600:three_prime_UTR | 50.0% | |
| !! | GCTTCTGGTTCTGTTCGTGC+TGG | + | chr3_2:67733521-67733540 | Msa0419600:CDS | 55.0% |
| ! | GCCACTGGATGAAGCACTAG+CGG | + | chr3_2:67733971-67733990 | Msa0419600:CDS | 55.0% |
| TCCGCTAGTGCTTCATCCAG+TGG | - | chr3_2:67733975-67733994 | None:intergenic | 55.0% | |
| ! | GGATGAAGCACTAGCGGATC+TGG | + | chr3_2:67733977-67733996 | Msa0419600:CDS | 55.0% |
| !! | TACTATGCGGGGCTTGCTGA+AGG | + | chr3_2:67734112-67734131 | Msa0419600:CDS | 55.0% |
| !! | ACTATGCGGGGCTTGCTGAA+GGG | + | chr3_2:67734113-67734132 | Msa0419600:CDS | 55.0% |
| GGCTCCTGTATCCCTTCCTA+TGG | + | chr3_2:67734153-67734172 | Msa0419600:CDS | 55.0% | |
| ! | ACCGGATTAGGCCATGAAGC+TGG | + | chr3_2:67734596-67734615 | Msa0419600:CDS | 55.0% |
| AGCTGCGGCACAGCTAATCA+AGG | + | chr3_2:67734848-67734867 | Msa0419600:CDS | 55.0% | |
| GAACCGAGCACACGTATTCG+AGG | - | chr3_2:67736248-67736267 | None:intergenic | 55.0% | |
| TATCTGATGAGCAGTGGGGC+TGG | + | chr3_2:67736993-67737012 | Msa0419600:CDS | 55.0% | |
| GCTCCCAGTTGCAGAGCTAC+CGG | - | chr3_2:67734817-67734836 | None:intergenic | 60.0% | |
| !! | TGCGGGGCTTGCTGAAGGGT+TGG | + | chr3_2:67734117-67734136 | Msa0419600:CDS | 65.0% |
| ! | ATCGCTCCAGCTCTGGCTGC+TGG | + | chr3_2:67734385-67734404 | Msa0419600:CDS | 65.0% |
| GCACAACCAGCAGCCAGAGC+TGG | - | chr3_2:67734394-67734413 | None:intergenic | 65.0% | |
| ! | GACTGGTGGGCGTCGCCCAG+AGG | + | chr3_2:67736211-67736230 | Msa0419600:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 67733069 | 67737238 | 67733069 | ID=Msa0419600;Name=Msa0419600 |
| chr3_2 | mRNA | 67733069 | 67737238 | 67733069 | ID=Msa0419600-mRNA-1;Parent=Msa0419600;Name=Msa0419600-mRNA-1;_AED=0.10;_eAED=0.10;_QI=142|1|1|1|1|1|15|199|503 |
| chr3_2 | exon | 67733069 | 67733319 | 67733069 | ID=Msa0419600-mRNA-1:exon:15807;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67733426 | 67733568 | 67733426 | ID=Msa0419600-mRNA-1:exon:15808;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67733918 | 67733998 | 67733918 | ID=Msa0419600-mRNA-1:exon:15809;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67734088 | 67734236 | 67734088 | ID=Msa0419600-mRNA-1:exon:15810;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67734354 | 67734446 | 67734354 | ID=Msa0419600-mRNA-1:exon:15811;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67734529 | 67734652 | 67734529 | ID=Msa0419600-mRNA-1:exon:15812;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67734804 | 67734869 | 67734804 | ID=Msa0419600-mRNA-1:exon:15813;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67734952 | 67735018 | 67734952 | ID=Msa0419600-mRNA-1:exon:15814;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67735194 | 67735270 | 67735194 | ID=Msa0419600-mRNA-1:exon:15815;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67735493 | 67735606 | 67735493 | ID=Msa0419600-mRNA-1:exon:15816;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67736155 | 67736232 | 67736155 | ID=Msa0419600-mRNA-1:exon:15817;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67736320 | 67736471 | 67736320 | ID=Msa0419600-mRNA-1:exon:15818;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67736563 | 67736623 | 67736563 | ID=Msa0419600-mRNA-1:exon:15819;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67736724 | 67736830 | 67736724 | ID=Msa0419600-mRNA-1:exon:15820;Parent=Msa0419600-mRNA-1 |
| chr3_2 | exon | 67736949 | 67737238 | 67736949 | ID=Msa0419600-mRNA-1:exon:15821;Parent=Msa0419600-mRNA-1 |
| chr3_2 | five_prime_UTR | 67733069 | 67733210 | 67733069 | ID=Msa0419600-mRNA-1:five_prime_utr;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67733211 | 67733319 | 67733211 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67733426 | 67733568 | 67733426 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67733918 | 67733998 | 67733918 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67734088 | 67734236 | 67734088 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67734354 | 67734446 | 67734354 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67734529 | 67734652 | 67734529 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67734804 | 67734869 | 67734804 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67734952 | 67735018 | 67734952 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67735194 | 67735270 | 67735194 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67735493 | 67735606 | 67735493 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67736155 | 67736232 | 67736155 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67736320 | 67736471 | 67736320 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67736563 | 67736623 | 67736563 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67736724 | 67736830 | 67736724 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | CDS | 67736949 | 67737039 | 67736949 | ID=Msa0419600-mRNA-1:cds;Parent=Msa0419600-mRNA-1 |
| chr3_2 | three_prime_UTR | 67737040 | 67737238 | 67737040 | ID=Msa0419600-mRNA-1:three_prime_utr;Parent=Msa0419600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
